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source: palm/trunk/SCRIPTS/subjob @ 1469

Last change on this file since 1469 was 1469, checked in by maronga, 10 years ago
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[1]	1	#!/bin/ksh
[1090]	2
	3	# subjob - script for automatic generation and submission of batch-job files
	4	# for various batch queuing systems
	5
[1046]	6	#--------------------------------------------------------------------------------#
	7	# This file is part of PALM.
	8	#
	9	# PALM is free software: you can redistribute it and/or modify it under the terms
	10	# of the GNU General Public License as published by the Free Software Foundation,
	11	# either version 3 of the License, or (at your option) any later version.
	12	#
	13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	16	#
	17	# You should have received a copy of the GNU General Public License along with
	18	# PALM. If not, see <http://www.gnu.org/licenses/>.
	19	#
[1310]	20	# Copyright 1997-2014 Leibniz Universitaet Hannover
[1046]	21	#--------------------------------------------------------------------------------#
	22	#
	23	# Current revisions:
[1090]	24	# ------------------
[1351]	25	#
[1469]	26	#
[1046]	27	# Former revisions:
	28	# -----------------
[169]	29	# $Id: subjob 1469 2014-09-24 14:09:56Z maronga $
[1200]	30	#
[1469]	31	# 1468 2014-09-24 14:06:57Z maronga
	32	# Typo removed (addres->address)
	33	# Adjustments for lcxe6
	34	#
[1453]	35	# 1452 2014-08-22 09:41:06Z heinze
	36	# local hosts for blizzard added
	37	#
[1451]	38	# 1450 2014-08-21 07:31:51Z heinze
	39	# HLRN-III (lccrayb): testq queue adjusted to mpp1testq
	40	#
[1443]	41	# 1442 2014-07-28 07:09:10Z raasch
	42	# HLRN-III (lccrayb/lccrayh) queues adjusted
	43	#
[1379]	44	# 1378 2014-04-28 06:04:58Z raasch
	45	# -et option added for lctit
	46	#
[1351]	47	# 1350 2014-04-04 13:01:30Z maronga
	48	# location of qsub updated for lcxe6
	49	#
[1290]	50	# 1289 2014-03-04 07:12:34Z raasch
	51	# German comments translated to English
	52	# fimm-, necriam-, scirocco-, ibmy-, and sgi-specific code removed
	53	#
[1280]	54	# 1279 2014-01-28 12:10:14Z raasch
	55	# node calculation modified due to changes in mrun (tasks_per_node must not be
	56	# an integral divisor of numprocs any more)
	57	#
[1275]	58	# 1274 2014-01-09 13:14:54Z heinze
	59	# adjustments for lccrayh
	60	#
[1267]	61	# 1266 2013-12-11 12:07:34Z heinze
	62	# further adjustments for lccrayb (use msub instead of qsub)
	63	#
[1265]	64	# 1264 2013-12-09 12:46:09Z fricke
	65	# Bugfix: Using number of nodes instead of number of processors (lccrayb)
	66	#
[1263]	67	# 1262 2013-12-09 10:57:20Z fricke
	68	# further adjustments for lccrayb
	69	#
[1261]	70	# 1260 2013-12-04 12:48:04Z raasch
	71	# jaboticaba admitted
	72	#
[1256]	73	# 1255 2013-11-07 14:43:35Z raasch
	74	# further adjustments for lccrayb
	75	#
[1225]	76	# 1224 2013-09-16 07:27:23Z raasch
	77	# first adjustments for lccrayb
	78	#
[1203]	79	# 1202 2013-07-10 16:22:07Z witha
	80	# adjustments for Forwind cluster (lcflow)
	81	#
[1200]	82	# 1199 2013-07-05 14:52:22Z raasch
	83	# adjustments for CSC Helsinki (lccrayf)
	84	#
[1185]	85	# use of cluster/express queue enabled (ibmh)
	86	# vinessa added (imuk)
[1047]	87	#
[1104]	88	# 1103 2013-02-20 02:15:53Z raasch
	89	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
	90	# instead typeset -L/R),
	91	# further adjustments for lckyuh
	92	#
[1100]	93	# 2013-02-10 01:47:43Z raasch
	94	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
	95	# and for Forwind cluster (lcflow)
	96	#
[1096]	97	# 1094 2013-02-03 01:52:12Z raasch
	98	# new option -P for explicit setting of ssh/scp port,
	99	# decalpha parts (yonsei) removed
	100	#
[1091]	101	# 2013-02-02 07:06:13Z raasch
[1099]	102	# adjustments for Kyushu-University computing center (lckyut - tatara)
[1091]	103	# old changelog messages removed
	104	#
[1047]	105	# 1046 2012-11-09 14:38:45Z maronga
	106	# code put under GPL (PALM 3.9)
	107	#
[1090]	108	# 08/07/94 - Siggi - first version finished
	109	# 29/06/94 - Siggi - script development started
	110	#--------------------------------------------------------------------------------#
	111	# subjob - script for automatic generation and submission of batch-job files
	112	# for various batch queuing systems
	113	#--------------------------------------------------------------------------------#
[1]	114
	115
[1289]	116	# VARIABLE-DECLARATIONS AND DEFAULT VALUES
[352]	117	delete_dayfile=false
[799]	118	email_notification=none
[122]	119	group_number=none
[1]	120	locat=normal
	121	no_default_queue=none
	122	no_submit=false
	123	job_catalog="~/job_queue"
	124	job_name=none
	125	local_user=$LOGNAME
	126	node_usage=shared
[475]	127	numprocs=0
[1]	128	punkte="..........................................................."
	129	submcom=qsub
	130	queue=default
	131	remote_host=none
	132	remote_user=""
	133	verify=true
	134
	135	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
[696]	136	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
[1]	137
	138
	139
[1289]	140	# ERROR HANDLING
	141	# IN CASE OF EXIT:
[1]	142	trap 'if [[ $locat != normal ]]
	143	then
	144	case $locat in
	145	(option) printf "\n --> available optios can be displayed"
	146	printf " by typing:"
	147	printf "\n \"subjob ?\" \n";;
	148	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
	149	(*) printf "\n +++ unknown error"
	150	printf "\n please inform S. Raasch!\n"
	151	esac
	152	[[ -f $job_to_send ]] && rm $job_to_send
	153	printf "\n\n+++ SUBJOB killed \n\n"
	154	fi' exit
	155
	156
[1289]	157	# IN CASE OF TERMINAL-BREAK:
[1]	158	trap '[[ -f $job_to_send ]] && rm $job_to_send
	159	printf "\n\n+++ SUBJOB killed \n\n"
	160	exit
	161	' 2
	162
	163
	164
	165
[1289]	166	# DETERMINE NAME OF LOCAL HOST
[1]	167	local_host=$(hostname)
	168
	169
	170
[1289]	171	# SET HOST-SPECIFIC VARIABLES VEREINBAREN (CHECK, IF LOCAL HOST
	172	# IS ADMITTED AT ALL)
	173	# NOTE: ONE OF THE ENTRIES FOR "lck" OR "lckordi" ALWAYS HAS TO BE
	174	# COMMENT OUT, BECAUSE THE HOSTNAME (node*) IS SAME FOR BOTH MACHINES
[1]	175	case $local_host in
[1468]	176	(ambiel-lx) local_address=134.106.74.48; local_host=lcfor;;
	177	(atmos) local_address=172.20.25.35; local_host=lcide;;
	178	(austru) local_address=130.75.105.128; local_host=lcmuk;;
	179	(autan) local_address=130.75.105.57; local_host=lcmuk;;
	180	(bora) local_address=130.75.105.103; local_host=lcmuk;;
	181	(b04*) local_address=133.5.4.33; local_host=lckyuh;;
	182	(blizzard1\|p*) local_address=136.172.40.15; local_host=ibmh;;
	183	(blizzard2\|p*) local_address=136.172.40.16; local_host=ibmh;;
	184	(blogin\|bxc) local_address=130.73.233.1; local_host=lccrayb;;
	185	(hlogin\|hxc) local_address=130.75.4.1; local_host=lccrayh;;
	186	(breva) local_address=130.75.105.98; local_host=lcmuk;;
	187	(buran) local_address=130.75.105.58; local_host=lcmuk;;
	188	(caurus) local_address=130.75.105.19; local_host=lcmuk;;
	189	(climate*) local_address=165.132.26.68; local_host=lcyon;;
	190	(clogin*) local_address=86.50.166.21; local_host=lccrayf;;
	191	(cs*) local_address=136.172.44.131; local_host=nech;;
	192	(elephanta) local_address=130.75.105.6; local_host=lcmuk;;
	193	(flow01) local_address=10.141.255.71; local_host=lcflow;;
	194	(flow02) local_address=10.141.255.72; local_host=lcflow;;
	195	(node*) local_address=165.132.26.61 local_host=lck;;
	196	# (node*) local_address=210.219.61.8 local_host=lckordi;;
	197	(gaia*) local_address=150.183.146.24; local_host=ibmkisti;;
	198	(gallego) local_address=130.75.105.10; local_host=lcmuk;;
	199	(gregale) local_address=130.75.105.109; local_host=lcmuk;;
	200	(hababai) local_address=130.75.105.108; local_host=lcmuk;;
	201	(hayaka*) local_address=133.5.4.33; local_host=lckyuh;;
	202	(hexagon.bccs.uib.no) local_address=129.177.20.113; local_host=lcxe6;;
	203	(hx*) local_address=133.3.51.11; local_host=lckyoto;;
	204	(inferno) local_address=130.75.105.5; local_host=lcmuk;;
	205	(irifi) local_address=130.75.105.104; local_host=lcmuk;;
	206	(jaboticaba) local_address=150.163.25.181; local_host=lcbr;;
	207	(sno) local_address=130.75.105.113; local_host=lcmuk;;
	208	(levanto) local_address=130.75.105.45; local_host=lcmuk;;
	209	(login*) local_address=118.128.66.223; local_host=lckiaps;;
	210	(maestro) local_address=130.75.105.2; local_host=lcmuk;;
	211	(meller) local_address=134.106.74.155; local_host=lcfor;;
	212	(meteo-login*) local_address=193.166.211.144;local_host=lcxt5m;;
	213	(hexagon*) local_address=129.177.20.113; local_host=lcxe6;;
	214	(nobel*) local_address=150.183.5.101; local_host=ibms;;
	215	(orkan) local_address=130.75.105.3; local_host=lcmuk;;
	216	(ostria) local_address=130.75.105.106; local_host=lcmuk;;
	217	(paesano) local_address=130.75.105.46; local_host=lcmuk;;
	218	(pcj*) local_address=172.31.120.1; local_host=lckyut;;
	219	(pingui) local_address=134.106.74.118; local_host=lcfor;;
	220	(quanero) local_address=130.75.105.107; local_host=lcmuk;;
	221	(rte*) local_address=133.5.185.60; local_host=lcrte;;
	222	(shiokaze-lx) local_address=134.106.74.123; local_host=lcfor;;
	223	(sisu-login*) local_address=86.50.166.21; local_host=lccrayf;;
	224	(solano) local_address=130.75.105.110; local_host=lcmuk;;
	225	(sugoka*) local_address=172.31.120.1; local_host=lckyut;;
	226	(t2a*) local_address=10.1.6.165; local_host=lctit;;
	227	(urban*) local_address=147.46.30.151 local_host=lcsb;;
	228	(vinessa) local_address=130.75.105.112; local_host=lcmuk;;
	229	(vorias) local_address=172.20.25.43; local_host=lcmuk;;
	230	(*.cc.kyushu-u.ac.jp) local_address=133.5.4.129; local_host=ibmku;;
[1]	231	(*) printf "\n +++ \"$local_host\" unknown";
[1255]	232	printf "\n please contact the PALM group at IMUK";
[1]	233	locat=parameter; exit;;
	234	esac
	235
	236
	237
[1289]	238	# BY DEFAULT, THE REMOTE HOST IS THE LOCAL HOST
[1]	239	remote_host=$local_host
	240
	241
	242
	243
[1289]	244	# READ THE SHELLSCRIPT-OPTIONS
[1094]	245	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
[1]	246	do
	247	case $option in
	248	(c) job_catalog=$OPTARG;;
	249	(d) delete_dayfile=true;;
	250	(D) no_submit=true;;
[352]	251	(e) email_notification=$OPTARG;;
[125]	252	(g) group_number=$OPTARG;;
[1]	253	(h) remote_host=$OPTARG;;
	254	(m) memory=$OPTARG;;
	255	(n) job_name=$OPTARG;;
	256	(N) node_usage=$OPTARG;;
	257	(O) threads_per_task=$OPTARG;;
[1094]	258	(P) scp_port=$OPTARG;;
[1]	259	(q) no_default_queue=$OPTARG;;
	260	(t) cputime=$OPTARG;;
	261	(T) tasks_per_node=$OPTARG;;
	262	(u) remote_user=$OPTARG;;
	263	(v) verify=false;;
	264	(X) numprocs=$OPTARG;;
	265	(\?) printf "\n +++ Option $OPTARG unknown \n";
	266	locat=option; exit;;
	267	esac
	268	done
	269
	270
[1289]	271	# GET THE NAME OF THE JOBFILE AS NEXT ARGUMENT
[1103]	272	(( to_shift = $OPTIND - 1 ))
	273	shift $to_shift; file_to_send=$1
[1]	274
	275
[1289]	276	# OUTPUT OF SHORT DESCRIPTION OF SCRIPT-OPTIONS
[1]	277	if [ "$1" = "?" ]
	278	then
	279	(printf "\n *** subjob can be called as follows:\n"
	280	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
	281	printf "\n Description of available options:\n"
	282	printf "\n Option Description Default-Value"
	283	printf "\n -c job-input- and output-catalog ~/job_queue"
	284	printf "\n -d no job-protocol will be created ---"
	285	printf "\n -D only the job-file will be created ---"
	286	printf "\n -h execution host, available hosts: $remote_host"
[1289]	287	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, lc...,"
	288	printf "\n lckiaps, lctit, nech"
[1]	289	printf "\n -m memory demand per process in MByte ---"
	290	printf "\n -n jobname <jobdatei>"
	291	printf "\n -O threads per task (for OpenMP usage) 1"
[1094]	292	printf "\n -P ssh/scp port default port"
[1]	293	printf "\n -q job-queue to be used default"
	294	printf "\n -t allowed cpu-time in seconds ---"
	295	printf "\n -T tasks per node (on parallel hosts) ---"
	296	printf "\n -u username on execution host from .netrc"
	297	printf "\n -v no prompt for confirmation ---"
	298	printf "\n -X # of processors (on parallel hosts) 1"
	299	printf "\n "
	300	printf "\n The only possible positional parameter is <jobfile>:"
	301	printf "\n The complete NQS-job must be provided here."
	302	printf "\n <jobfile>=? creates this outline\n\n") \| more
	303	exit
	304	fi
	305
	306
	307
[1289]	308	# CHECK, IF JOB-FILE HAS BEEN GIVEN AS ARGUMENT AND IF THE FILE ITSELF EXISTS
[1]	309	if [[ "$file_to_send" = "" ]]
	310	then
	311	printf "\n +++ job-file missing"
	312	locat=parameter; exit
	313	else
	314	if [[ -f $file_to_send ]]
	315	then
	316	true
	317	else
	318	printf "\n +++ job-file: "
	319	printf "\n $file_to_send"
	320	printf "\n does not exist"
	321	locat=parameter; exit
	322	fi
	323	fi
	324
	325
	326
[1289]	327	# IF NO JOBNAME HAS BEEN GIVEN, JOBNAME IS SET TO THE NAME OF THE JOB-FILE,
	328	# PROVIDED THAT THE JOB-FILE NAME DOES NOT CONTAIN ANY PATH
[1]	329	if [[ $job_name = none ]]
	330	then
	331	job_name=$file_to_send
	332	fi
	333	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
	334	then
	335	printf "\n +++ job-file name: "
	336	printf "\n $job_name"
	337	printf "\n must not contain \"/\"-characters"
	338	locat=parameter; exit
	339	fi
	340
	341
	342
	343
[1289]	344	# SET HOST-SPECIFIC QUANTITIES, OR TERMINATE IN CASE OF UNKNOWN HOST,
	345	# OR IF NO HOST HAS BEEN GIVEN
[1]	346	if [[ $remote_host = none ]]
	347	then
	348	printf "\n +++ host missing"
	349	locat=option; exit
	350	else
	351	case $remote_host in
[1468]	352	(ibm) queue=p690_standard; remote_address=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	353	(ibmh) queue=cluster; remote_address=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	354	(ibmkisti) queue=class.32plus; remote_address=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	355	(ibmku) queue=s4; remote_address=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
	356	(ibms) queue=p_normal; remote_address=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	357	(lccrayb) queue=mpp1testq; remote_address=130.73.233.1; submcom=/opt/moab/7.2.6/bin/msub;;
	358	(lccrayh) queue=mpp1testq; remote_address=130.75.4.1; submcom=/opt/moab/7.2.6/bin/msub;;
	359	(lccrayf) queue=small; remote_address=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
	360	(lcflow) remote_address=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;;
	361	(lckyoto) remote_address=133.3.51.11; submcom=/thin/local/bin/qsub;;
	362	(lck) remote_address=165.132.26.61; submcom=/usr/torque/bin/qsub;;
	363	(lckiaps) remote_address=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
	364	(lckordi) remote_address=210.219.61.8; submcom=/usr/torque/bin/qsub;;
	365	(lckyuh) remote_address=133.5.4.33; submcom=/usr/bin/pjsub;;
	366	(lckyut) remote_address=133.5.4.37; submcom=/usr/bin/pjsub;;
	367	(lcsb) remote_address=147.46.30.151; submcom=/usr/torque/bin/qsub;;
	368	(lctit) queue=S; remote_address=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
	369	(lcxe6) remote_address=129.177.20.113; submcom=/opt/torque/default/bin/qsub;;
	370	(lcxt5m) remote_address=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
	371	(lcyon) remote_address=165.132.26.68; submcom=/usr/torque/bin/qsub;;
	372	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_address=136.172.44.147; submcom="/usr/local/bin/qsub";;
[251]	373	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
	374	locat=parameter; exit;;
[1]	375	esac
	376	fi
	377
	378
[1289]	379	# CHECK, IF A VALID QUEUE HAS BEEN GIVEN
[1]	380	if [[ $no_default_queue != none ]]
	381	then
	382	error=false
	383	ndq=$no_default_queue
	384	case $remote_host in
	385	(ibm) case $ndq in
	386	(p690_express\|p690_standard\|p690_long) error=false;;
	387	(*) error=true;;
	388	esac;;
	389	(ibmh) case $ndq in
[1184]	390	(cluster\|express) error=false;;
[1]	391	(*) error=true;;
	392	esac;;
[693]	393	(ibmkisti) case $ndq in
	394	(class.32plus\|class.1-2\|class.2-32) error=false;;
	395	(*) error=true;;
	396	esac;;
[622]	397	(ibmku) case $ndq in
	398	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
	399	(*) error=true;;
	400	esac;;
[1]	401	(ibms) case $ndq in
	402	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
	403	(*) error=true;;
	404	esac;;
[1224]	405	(lccrayb) case $ndq in
[1442]	406	(dataq\|mpp1q\|mpp1testq\|smp1q\|smp1testq\|specialm1q) error=false;;
[1224]	407	(*) error=true;;
	408	esac;;
[1274]	409	(lccrayh) case $ndq in
[1442]	410	(dataq\|mpp1q\|mpp1testq\|smp1q\|smp1testq\|specialm1q) error=false;;
[1274]	411	(*) error=true;;
	412	esac;;
[1197]	413	(lccrayf) case $ndq in
	414	(usup\|test*\|small\|large) error=false;;
	415	(*) error=true;;
	416	esac;;
[1099]	417	(lcflow) case $ndq in
	418	(cfd_lom_long.q\|cfd_him_long.q\|cfd_lom_serl.q\|cfd_lom_shrt.q\|cfd_him_shrt.q) error=false;;
	419	(*) error=true;;
	420	esac;;
[1040]	421	(lckiaps) case $ndq in
	422	(express\|normal) error=false;;
	423	(*) error=true;;
	424	esac;;
[440]	425	(lckyoto) case $ndq in
	426	(eh\|ph) error=false;;
	427	(*) error=true;;
	428	esac;;
[1099]	429	(lckyuh) case $ndq in
	430	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
	431	(*) error=true;;
	432	esac;;
[1090]	433	(lckyut) case $ndq in
	434	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
	435	(*) error=true;;
	436	esac;;
[1]	437	(lctit) case $ndq in
[635]	438	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
[1]	439	(*) error=true;;
	440	esac;;
	441	(t3eb) case $ndq in
	442	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
	443	(*) error=true;;
	444	esac;;
	445	(t3eh) case $ndq in
	446	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
	447	(*) error=true;;
	448	esac;;
	449	(t3ej2\|t3ej5) case $ndq in
	450	(low\|normal\|high) error=false;;
	451	(*) error=true;;
	452	esac;;
	453	(t3es) case $ndq in
	454	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
	455	(*) error=true;;
	456	esac;;
	457	esac
	458	if [[ $error = true ]]
	459	then
	460	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
	461	locat=parameter; exit
	462	else
	463	queue=$no_default_queue
	464	fi
	465	fi
	466
	467
	468
[1289]	469	# CHECK THE CPU-TIME
	470	# SPLIT TIME INTO HOURS, MINUTES, AND SECONDS
[1]	471	done=false
	472	while [[ $done = false ]]
	473	do
	474	if (( $cputime <= 0 ))
	475	then
	476	printf "\n +++ wrong cpu-time or cpu-time missing"
	477	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
	478	printf "\n >>> "
	479	read cputime 1>/dev/null 2>&1
	480	else
	481	done=true
	482	fi
	483	done
	484	if [[ $remote_host = nech ]]
	485	then
	486	if (( tasks_per_node != 0 ))
	487	then
	488	(( cputime = cputime * tasks_per_node ))
	489	elif [[ $numprocs != 0 ]]
	490	then
	491	(( cputime = cputime * numprocs ))
	492	fi
	493	fi
	494	(( stunden = cputime / 3600 ))
	495	(( resttime = cputime - stunden * 3600 ))
	496	(( minuten = resttime / 60 ))
	497	(( sekunden = resttime - minuten * 60 ))
	498	timestring=${stunden}:${minuten}:${sekunden}
	499
	500
	501
[1289]	502	# CHECK THE MEMORY DEMAND
[1]	503	done=false
	504	while [[ $done = false ]]
	505	do
	506	if (( memory <= 0 ))
	507	then
	508	printf "\n +++ wrong memory demand or memory demand missing"
	509	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	510	printf "\n >>> "
	511	read memory 1>/dev/null 2>&1
	512	else
	513	done=true
	514	fi
	515	done
	516
[1289]	517	if [[ $remote_host = nech ]]
[1]	518	then
	519	if (( tasks_per_node != 0 ))
	520	then
	521	(( Memory = memory * tasks_per_node / 1000 ))
	522	elif [[ $numprocs != 0 ]]
	523	then
	524	(( Memory = memory * numprocs / 1000 ))
	525	else
	526	(( Memory = memory / 1000 ))
	527	fi
[635]	528	elif [[ $remote_host = lctit ]]
	529	then
	530	(( Memory = memory * tasks_per_node / 1000 ))
[1]	531	fi
	532
	533
[1289]	534	# MEMORY DEMAND IN CASE OF OPENMP-USAGE ON IBM-SYSTEMS
[1]	535	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	536	then
	537	(( memory = memory * threads_per_task ))
	538	fi
	539
	540
[1289]	541	# CALCULATE NUMBER OF REQUIRED NODES
[1]	542	if (( tasks_per_node != 0 ))
	543	then
[1279]	544	(( nodes = ( numprocs - 1 ) / ( tasks_per_node * threads_per_task ) + 1 ))
[1]	545	fi
	546
[1094]	547
[1289]	548	# CALCULATE NUMBER OF PROCESSES PER NODE
[622]	549	(( processes_per_node = tasks_per_node * threads_per_task ))
[1]	550
[1094]	551
[1289]	552	# CALCULATE NUMBER OF MPI TASKS
[696]	553	(( mpi_tasks = numprocs / threads_per_task ))
[1]	554
[696]	555
[1289]	556	# SET PORT NUMBER OPTION FOR CALLS OF ssh/scp, subjob AND batch_scp SCRIPTS
[1094]	557	if [[ "$scp_port" != "" ]]
	558	then
	559	PORTOPT="-P $scp_port"
	560	SSH_PORTOPT="-p $scp_port"
	561	fi
	562
	563
[1289]	564	# HEADER-OUTPUT
[1]	565	if [[ $verify = true ]]
	566	then
	567	printf "\n\n"
	568	printf "#--------------------------------------------------------------# \n"
	569	spalte1=SUBJOB;spalte2=$(date)
[1103]	570	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
[1]	571	printf "\| \| \n"
	572	printf "\| values of parameters/options: \| \n"
[1103]	573	spalte1=$(echo local_host$punkte \| cut -c-20)
	574	spalte2=$punkte$local_host
	575	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	576	spalte1=$(echo remote_host$punkte \| cut -c-20)
	577	spalte2=$punkte$remote_host
	578	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	579	spalte1=$(echo queue$punkte \| cut -c-20)
	580	spalte2=$punkte$queue
	581	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	582	spalte1=$(echo memory$punkte \| cut -c-20)
	583	spalte2="$punkte$memory mb"
	584	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	585	spalte1=$(echo cputime$punkte \| cut -c-20)
	586	spalte2="$punkte$cputime sec"
	587	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	588	spalte1=$(echo job_name$punkte \| cut -c-20)
	589	spalte2="$punkte$job_name"
	590	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
[1]	591	printf "#--------------------------------------------------------------# \n\n"
	592
	593
[1289]	594	# QUERY CHECK
[1]	595	antwort="dummy"
	596	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
	597	do
	598	read antwort?" >>> continue (y/n) ? "
	599	done
	600	if [[ $antwort = n \|\| $antwort = N ]]
	601	then
	602	locat=verify; exit
	603	fi
	604	printf "\n"
	605	fi
	606
	607
	608
[1289]	609	# GENERATE RANDOM IDENTIFIER, AND DETERMINE THE JOBNAME ON THE TARGET HOST
	610	identifier=$RANDOM
	611	job_on_remhost=${job_name}_${identifier}_$local_host
	612	job_to_send=job_to_send_$identifier
[1]	613	if [[ $delete_dayfile = false ]]
	614	then
[1289]	615	remote_dayfile=${local_host}_${job_name}_result_$identifier
[1]	616	local_dayfile=${remote_host}_${job_name}
	617	else
	618	remote_dayfile=/dev/null
	619	fi
	620
	621
	622
[1289]	623	# GENERATE THE BATCH-JOB SCRIPTS (FOR QUEUEING-SYSTEMS qsub/msub/LoadLeveler)
[1]	624	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
	625	then
	626
[1289]	627	# GENERAL LOADLEVELER SETTINGS
[622]	628	execute_in_shell="#!/bin/ksh"
	629	use_shell="# @ shell = /bin/ksh"
	630	consumable_memory="ConsumableMemory($memory mb)"
	631	class="# @ class = $queue"
	632	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
	633	network_to_use="# @ network.mpi = sn_all,shared,us"
	634	data_limit="# @ data_limit = 1.76gb"
	635	image_size="# @ image_size = 50"
[693]	636	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
[312]	637
[693]	638	if [[ $email_notification = none ]]
	639	then
	640	notify_user=""
	641	else
	642	notify_user="# @ notify_user = $email_notification"
	643	if [[ $delete_dayfile = true ]]
	644	then
	645	notification='# @ notification = never'
	646	fi
	647	fi
[622]	648
[312]	649	if [[ $remote_host = ibmh ]]
[1]	650	then
[312]	651	data_limit=""
	652	network_to_use=""
[1184]	653	class="# @ class = $queue"
[312]	654	environment=""
[814]	655	rset="# @ rset = RSET_MCM_AFFINITY"
	656	task_affinity="# @ task_affinity = core(1)"
[693]	657	elif [[ $remote_host = ibmkisti ]]
	658	then
	659	network_to_use="# @ network.MPI = sn_all,shared,US"
	660	wall_clock_limit="# @ wall_clock_limit = $timestring"
[696]	661	if [[ $threads_per_task = 1 ]]
	662	then
	663	rset="# @ rset = RSET_MCM_AFFINITY"
	664	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
	665	fi
[693]	666	environment=""
	667	use_shell=""
	668	data_limit=""
	669	image_size=""
[622]	670	elif [[ $remote_host = ibmku ]]
	671	then
	672	execute_in_shell="#!/usr/bin/ksh"
	673	use_shell="# @ shell = /usr/bin/ksh"
	674	consumable_memory=""
	675	environment=""
	676	network_to_use="# @ network.mpi = sn_all,shared,us"
	677	data_limit=""
	678	image_size=""
	679	elif [[ $remote_host = ibms ]]
	680	then
	681	network_to_use="# @ network.mpi = csss,shared,us"
[1]	682	fi
	683
	684	cat > $job_to_send << %%END%%
[622]	685	$execute_in_shell
	686	$use_shell
[1]	687
	688	# @ job_type = parallel
[693]	689	# @ job_name = $job_name
[1]	690	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
	691	# @ output = $remote_dayfile
	692	# @ error = $remote_dayfile
[693]	693	$wall_clock_limit
[622]	694	$image_size
[312]	695	$class
	696	$environment
[1]	697	$network_to_use
	698	$data_limit
[693]	699	$rset
	700	$mcm_affinity_options
[814]	701	$task_affinity
[1]	702	$notification
[693]	703	$notify_user
[1]	704
	705	%%END%%
	706
	707	if (( nodes > 0 ))
	708	then
	709
[693]	710	if [[ $remote_host != ibmkisti ]]
	711	then
	712
	713	cat >> $job_to_send << %%END%%
[1]	714	# @ node = $nodes
[622]	715	# @ tasks_per_node = $processes_per_node
[1]	716	# @ node_usage = $node_usage
	717	# @ queue
	718
	719	%%END%%
	720
[693]	721	else
	722
	723	cat >> $job_to_send << %%END%%
[696]	724	# @ total_tasks = $mpi_tasks
[693]	725	# @ blocking = unlimited
	726	# @ queue
	727
	728	%%END%%
	729
	730	fi
	731
[1]	732	else
	733
[1289]	734	cat >> $job_to_send << %%END%%
[1]	735	# @ blocking = unlimited
	736	# @ total_tasks = $numprocs
	737	# @ node_usage = $node_usage
	738	# @ queue
	739
	740	%%END%%
	741
	742	fi
	743
[1289]	744	# WORKAROUND BECAUSE OF SILLY JOB FILTER ON ibmkisti
[696]	745	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
	746	then
	747	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
	748	fi
	749
[1]	750	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
	751	then
	752
	753	cat > $job_to_send << %%END%%
	754	#!/bin/ksh
	755
	756	# @ job_type = serial
	757	# @ node_usage = $node_usage
	758	# @ job_name = palm
	759	# @ wall_clock_limit = ${timestring},$timestring
	760	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
	761	# @ output = $remote_dayfile
	762	# @ error = $remote_dayfile
[312]	763	$class
[1]	764	$notification
	765
	766	# @ queue
	767
	768	%%END%%
	769
[1274]	770	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
[1224]	771	then
	772
	773	if [[ $numprocs != 0 ]]
	774	then
	775	cat > $job_to_send << %%END%%
[1255]	776	#!/bin/bash
[1224]	777	#PBS -N $job_name
	778	#PBS -l walltime=$timestring
[1264]	779	#PBS -l nodes=$nodes:ppn=$processes_per_node
[1224]	780	#PBS -o $remote_dayfile
	781	#PBS -j oe
	782	#PBS -q $queue
	783
	784	$module_calls
	785
	786	%%END%%
	787
	788	else
	789
	790	continue
	791
	792	fi
	793
[1197]	794	elif [[ $remote_host = lccrayf ]]
	795	then
	796
	797	if [[ $numprocs != 0 ]]
	798	then
	799	cat > $job_to_send << %%END%%
	800	#!/bin/bash -l
	801	#SBATCH -J $job_name
	802	#SBATCH -t $timestring
	803	#SBATCH -N $nodes
	804	#SBATCH --ntasks-per-node=$processes_per_node
	805	#SBATCH -p $queue
	806	#SBATCH -o $remote_dayfile
	807	#SBATCH -e $remote_dayfile
	808
	809	$init_cmds
	810	$module_calls
	811
	812	%%END%%
	813
	814	else
	815	cat > $job_to_send << %%END%%
	816	#!/bin/bash -l
	817	#SBATCH -J $job_name
	818	#SBATCH -t $timestring
	819	#SBATCH -l ncpus=1
	820	#SBATCH -l pmem=${memory}mb
	821	#SBATCH -m abe
	822	#SBATCH -o $remote_dayfile
	823	#SBATCH -e $remote_dayfile
	824
	825	$init_cmds
	826	$module_calls
	827
	828	%%END%%
	829
	830	fi
	831
[1099]	832	elif [[ $remote_host = lcflow ]]
	833	then
[1202]	834	if [ $memory -gt 1800 ]; then
[1099]	835	use_himem=""
	836	else
	837	use_himem="#"
	838	fi
	839	if [[ $numprocs != 0 ]]
	840	then
[1202]	841	pe_set="#$ -pe impi41 $numprocs"
[1099]	842	else
[1202]	843	pe_set="#$ -pe impi41 1"
[1099]	844	fi
	845	if [[ $queue = default ]]
	846	then
	847	queue_set=""
	848	else
	849	queue_set="#$ -q $queue"
	850	fi
	851	[[ "$disc_space" = "" ]] && disc_space=50
	852
	853	cat > $job_to_send << %%END%%
	854	#!/bin/bash
	855	#$ -S /bin/bash
	856	#$ -N $job_name
	857	#$ -cwd
	858	#$ -l h_rt=$timestring
	859	#$ -l h_vmem=${memory}M
	860	#$ -o $remote_dayfile
	861	#$ -j y
	862	$pe_set
	863	#$ -R y
	864	${use_himem}#$ -l highmem=true
	865	#$ -l h_fsize=${disc_space}G
	866	$queue_set
	867
	868	%%END%%
	869
[1021]	870	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
[368]	871	then
	872
	873	if [[ $numprocs != 0 ]]
	874	then
	875	cat > $job_to_send << %%END%%
	876	#!/bin/ksh
	877	#PBS -N $job_name
	878	#PBS -l walltime=$timestring
	879	#PBS -l ncpus=$numprocs
	880	#PBS -l pmem=${memory}mb
	881	#PBS -o $remote_dayfile
[1021]	882	#PBS -l nodes=$nodes:ppn=${processes_per_node}
[368]	883	#PBS -j oe
	884
	885	mpd &
	886
	887	%%END%%
	888
	889	else
	890	cat > $job_to_send << %%END%%
	891	#!/bin/ksh
	892	#PBS -N $job_name
	893	#PBS -l walltime=$timestring
	894	#PBS -l ncpus=1
	895	#PBS -l pmem=${memory}mb
	896	#PBS -o $remote_dayfile
	897	#PBS -j oe
	898
	899	%%END%%
	900
	901	fi
	902
[1040]	903	elif [[ $remote_host = lckiaps ]]
	904	then
	905
	906	if [[ $numprocs != 0 ]]
	907	then
	908	cat > $job_to_send << %%END%%
	909	#!/bin/ksh
	910	#PBS -N $job_name
	911	#PBS -l walltime=$timestring
	912	#PBS -l select=1:ncpus=$numprocs
	913	#PBS -l pmem=${memory}mb
	914	#PBS -q $queue
	915	#PBS -o $remote_dayfile
	916	#PBS -j oe
	917	#PBS -V
	918
	919	%%END%%
	920
	921	else
	922	cat > $job_to_send << %%END%%
	923	#!/bin/ksh
	924	#PBS -N $job_name
	925	#PBS -l walltime=$timestring
	926	#PBS -l ncpus=1
	927	#PBS -l pmem=${memory}mb
	928	#PBS -o $remote_dayfile
	929	#PBS -j oe
	930
	931	%%END%%
	932
	933	fi
	934
[693]	935	elif [[ $remote_host = lcyon ]]
	936	then
	937
	938	if [[ $numprocs != 0 ]]
	939	then
	940	cat > $job_to_send << %%END%%
	941	#!/bin/ksh
	942	#PBS -N $job_name
	943	#PBS -l walltime=$timestring
	944	#PBS -l ncpus=$numprocs
	945	#PBS -l pmem=${memory}mb
	946	#PBS -o $remote_dayfile
	947	#PBS -j oe
	948
	949	%%END%%
	950
	951	else
	952	cat > $job_to_send << %%END%%
	953	#!/bin/ksh
	954	#PBS -N $job_name
	955	#PBS -l walltime=$timestring
	956	#PBS -l ncpus=1
	957	#PBS -l pmem=${memory}mb
	958	#PBS -o $remote_dayfile
	959	#PBS -j oe
	960
	961	%%END%%
	962
	963	fi
	964
[892]	965	elif [[ $remote_host = lcxe6 ]]
[164]	966	then
	967
	968	if [[ $numprocs != 0 ]]
	969	then
	970	cat > $job_to_send << %%END%%
[799]	971	#!/bin/ksh
[164]	972	#PBS -S /bin/ksh
	973	#PBS -N $job_name
[552]	974	#PBS -A $project_account
[206]	975	#PBS -j oe
[164]	976	#PBS -l walltime=$timestring
	977	#PBS -l mppwidth=${numprocs}
[622]	978	#PBS -l mppnppn=${processes_per_node}
[164]	979	#PBS -m abe
	980	#PBS -o $remote_dayfile
[492]	981	$email_directive
[164]	982
[892]	983	$init_cmds
[493]	984	$module_calls
[343]	985
[164]	986	%%END%%
	987
[108]	988	else
	989	cat > $job_to_send << %%END%%
	990	#!/bin/ksh
[168]	991	#PBS -S /bin/ksh
[108]	992	#PBS -N $job_name
[552]	993	#PBS -A $project_account
[206]	994	#PBS -j oe
[108]	995	#PBS -l walltime=$timestring
	996	#PBS -l ncpus=1
	997	#PBS -l pmem=${memory}mb
	998	#PBS -m abe
[492]	999	$email_directive
[108]	1000	#PBS -o $remote_dayfile
	1001
[892]	1002	$init_cmds
[493]	1003	$module_calls
[343]	1004
[108]	1005	%%END%%
	1006
	1007	fi
	1008
[440]	1009	elif [[ $remote_host = lckyoto ]]
[437]	1010	then
	1011
[440]	1012	cat > $job_to_send << %%END%%
[799]	1013	#!/bin/ksh
[440]	1014	# @\$-o $remote_dayfile
	1015	# @\$-eo -oi
	1016	# @\$-lP 16
[799]	1017	# @\$-lp 1
[440]	1018	# @\$-lm 28gb -llm unlimited -ls unlimited
	1019	# @\$-q $queue
	1020	# @\$-Pvn abs_pack
	1021	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
	1022	#. /thin/local/etc/setprofile/intel-11.0.sh
	1023	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
	1024	. ~/.myprofile
	1025	#. /home2/t/t51254/palm/current_version/myprofile
	1026	#. /thin/apps/pgi/mpi.sh
	1027	#
	1028	env
	1029	#
	1030	set -x
	1031
	1032	%%END%%
	1033
	1034	elif [[ $remote_host = lcxt5m ]]
	1035	then
	1036
[437]	1037	if [[ $numprocs != 0 ]]
	1038	then
	1039	cat > $job_to_send << %%END%%
[799]	1040	#!/bin/ksh
[437]	1041	#PBS -S /bin/ksh
	1042	#PBS -N $job_name
	1043	#PBS -j oe
	1044	#PBS -l walltime=$timestring
	1045	#PBS -l mppwidth=${numprocs}
[622]	1046	#PBS -l mppnppn=${processes_per_node}
[437]	1047	#PBS -m abe
	1048	#PBS -o $remote_dayfile
	1049
[892]	1050	$init_cmds
[493]	1051	$module_calls
[437]	1052
	1053	%%END%%
	1054
	1055	else
	1056	cat > $job_to_send << %%END%%
	1057	#!/bin/ksh
	1058	#PBS -S /bin/ksh
	1059	#PBS -N $job_name
	1060	#PBS -j oe
	1061	#PBS -l walltime=$timestring
	1062	#PBS -l ncpus=1
	1063	#PBS -l pmem=${memory}mb
	1064	#PBS -m abe
	1065	#PBS -o $remote_dayfile
	1066
[892]	1067	$init_cmds
[493]	1068	$module_calls
[437]	1069
	1070	%%END%%
	1071
	1072	fi
	1073
[1099]	1074	elif [[ $remote_host = lckyuh ]]
	1075	then
	1076	cat > $job_to_send << %%END%%
	1077	#!/bin/bash
	1078	#PJM -L "rscgrp=$queue"
	1079	#PJM -L "node=$nodes"
	1080	#PJM --mpi "proc=$numprocs"
	1081	#PJM -L "elapse=$timestring"
	1082	#PJM -o $remote_dayfile
	1083	#PJM -j
	1084	#PJM -X
	1085	#PJM --no-stging
	1086
	1087	export LANG=en_US.UTF-8
	1088	%%END%%
	1089
[1090]	1090	elif [[ $remote_host = lckyut ]]
	1091	then
	1092	cat > $job_to_send << %%END%%
	1093	#!/bin/bash
[1099]	1094	#PJM -L "rscgrp=$queue"
[1090]	1095	#PJM -L "vnode=$numprocs"
	1096	#PJM -L "vnode-core=1"
	1097	#PJM -L "elapse=$timestring"
	1098	#PJM --mpi proc=$numprocs
	1099	#PJM -o $remote_dayfile
	1100	#PJM -j
[1099]	1101	#PJM -X
	1102	#PJM --no-stging
[1090]	1103
	1104	export LANG=en_US.UTF-8
	1105	%%END%%
	1106
[1]	1107	elif [[ $remote_host = nech ]]
	1108	then
	1109
	1110	if (( nodes > 1 ))
	1111	then
	1112	cat > $job_to_send << %%END%%
	1113	#!/bin/ksh
[622]	1114	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
[1]	1115	#PBS -l ${qsubmem}=${Memory}gb
	1116	#PBS -b $nodes
	1117	#PBS -o $remote_dayfile
	1118	#PBS -N palm
	1119	#PBS -j o
	1120	#PBS -T mpisx
	1121
	1122	%%END%%
	1123
	1124	elif [[ $numprocs != 0 ]]
	1125	then
	1126	cat > $job_to_send << %%END%%
	1127	#!/bin/ksh
[622]	1128	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
[1]	1129	#PBS -l ${qsubmem}=${Memory}gb
	1130	#PBS -o $remote_dayfile
	1131	#PBS -N palm
	1132	#PBS -j o
	1133
	1134	%%END%%
	1135
	1136	else
	1137	cat > $job_to_send << %%END%%
	1138	#!/bin/ksh
	1139	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
	1140	#PBS -o $remote_dayfile
	1141	#PBS -j o
	1142
	1143	%%END%%
	1144
	1145	fi
	1146
	1147	elif [[ $remote_host = lctit ]]
	1148	then
	1149	cat > $job_to_send << %%END%%
[635]	1150	#!/bin/ksh
[892]	1151	$init_cmds
[678]	1152	$module_calls
	1153
[1]	1154	%%END%%
	1155
[1289]	1156	# SET OPTIONS FOR SUBMIT-COMMAND
[678]	1157	if [[ $tasks_per_node != $processes_per_node ]]
	1158	then
[1378]	1159	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -et 1 -q $queue "
[678]	1160	else
[1378]	1161	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -et 1 -q $queue "
[678]	1162	fi
[1]	1163
	1164	else
	1165
	1166	cat > $job_to_send << %%END%%
	1167	# @\$-q ${queue}
	1168	# @\$-l${qsubtime} $timestring
	1169	# @\$-l${qsubmem} ${memory}mb
	1170	# @\$-o $remote_dayfile
	1171	# @\$-eo
	1172
	1173	%%END%%
	1174
	1175	fi
	1176
	1177
[1289]	1178	# IN CASE OF JOBS EXECUTING ON REMOTE-HOSTS, THE TRANSFER OF THE DAYFILES
	1179	# TO THE LOCAL HOSTS WILL BE INITIATED BY TRAP ON EXIT
	1180	# NO TRANSFER POSSIBLE ON IBM IN SEOUL
[1]	1181	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
	1182	then
	1183	echo "set +vx" >> $job_to_send
	1184	echo "trap '" >> $job_to_send
	1185	echo "set +vx" >> $job_to_send
[1468]	1186	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $remote_host = lccrayb \|\| $remote_host = lccrayh \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lcflow \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* \|\| $remote_host = lcxe6 ]]
[1]	1187	then
[622]	1188	if [[ $remote_host = ibmh ]]
[1]	1189	then
	1190	return_queue=c1
[693]	1191	elif [[ $remote_host = ibmkisti ]]
	1192	then
	1193	return_queue=class.1-2
[622]	1194	elif [[ $remote_host = ibmku ]]
	1195	then
	1196	return_queue=sdbg2
[1]	1197	elif [[ $remote_host = ibms ]]
	1198	then
	1199	return_queue=p_normal
[1274]	1200	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
[1255]	1201	then
	1202	return_queue=dataq
[1468]	1203	elif [[ $remote_host = lcxe6 ]]
	1204	then
	1205	return_queue=debug
[1040]	1206	elif [[ $remote_host = lckiaps ]]
	1207	then
	1208	return_queue=express
[1099]	1209	elif [[ $remote_host = lckyuh ]]
	1210	then
	1211	return_queue=cx-single
[1090]	1212	elif [[ $remote_host = lckyut ]]
	1213	then
	1214	return_queue=cx-single
[1]	1215	else
	1216	return_queue=unknown
	1217	fi
	1218
	1219	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1220	then
	1221
[622]	1222	if [[ $remote_host = ibmku ]]
	1223	then
[1289]	1224	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
	1225	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
[622]	1226	else
[1289]	1227	echo "echo \"#!/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
[622]	1228	fi
[1289]	1229	echo "echo \"# @ job_type = serial\" >> scpjob.$identifier" >> $job_to_send
	1230	echo "echo \"# @ job_name = transfer\" >> scpjob.$identifier" >> $job_to_send
	1231	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$identifier" >> $job_to_send
	1232	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$identifier " >> $job_to_send
	1233	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
	1234	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
[312]	1235	if [[ $host != "ibmh" ]]
	1236	then
[1289]	1237	echo "echo \"# @ class = $return_queue\" >> scpjob.$identifier" >> $job_to_send
[312]	1238	fi
[1289]	1239	echo "echo \"# @ image_size = 10\" >> scpjob.$identifier" >> $job_to_send
	1240	echo "echo \"# @ notification = never\" >> scpjob.$identifier" >> $job_to_send
[1]	1241
[1289]	1242	echo "echo \"# @ queue\" >> scpjob.$identifier" >> $job_to_send
	1243	echo "echo \" \" >> scpjob.$identifier" >> $job_to_send
[1]	1244
[1289]	1245	echo "echo \"set -x\" >> scpjob.$identifier" >> $job_to_send
[1468]	1246	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$identifier" >> $job_to_send
[622]	1247	if [[ $remote_host = ibmku ]]
	1248	then
[1289]	1249	echo "echo \"rm scpjob.$identifier\" >> scpjob.$identifier" >> $job_to_send
[622]	1250	fi
[1289]	1251	echo "echo \"exit\" >> scpjob.$identifier" >> $job_to_send
[1]	1252
	1253	elif [[ $remote_host = nech ]]
	1254	then
	1255	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
[1289]	1256	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
[1]	1257	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
	1258	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
	1259	echo "#PBS -j o" >> $job_to_send
	1260	echo " " >> $job_to_send
	1261	echo "set -x" >> $job_to_send
	1262	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
[1468]	1263	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1]	1264	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1265	echo "%%END%%" >> $job_to_send
	1266
[1099]	1267	elif [[ $remote_host = lckyuh ]]
	1268	then
[1289]	1269	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
[1099]	1270	echo "#!/bin/bash" >> $job_to_send
	1271	echo "#PJM -L \"node=1\"" >> $job_to_send
	1272	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
	1273	echo "#PJM --no-stging" >> $job_to_send
	1274	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
	1275	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1276	echo "#PJM -j" >> $job_to_send
	1277	echo " " >> $job_to_send
	1278	echo "export LANG=en_US.UTF-8" >> $job_to_send
	1279	echo "set -x" >> $job_to_send
[1468]	1280	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1099]	1281	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1282	echo "%%END%%" >> $job_to_send
	1283
[1090]	1284	elif [[ $remote_host = lckyut ]]
	1285	then
[1289]	1286	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
[1090]	1287	echo "#!/bin/bash" >> $job_to_send
	1288	echo "#PJM -L \"vnode=1\"" >> $job_to_send
	1289	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
	1290	echo "#PJM --no-stging" >> $job_to_send
	1291	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
	1292	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1293	echo "#PJM -j" >> $job_to_send
	1294	echo " " >> $job_to_send
	1295	echo "export LANG=en_US.UTF-8" >> $job_to_send
	1296	echo "set -x" >> $job_to_send
[1468]	1297	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1090]	1298	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1299	echo "%%END%%" >> $job_to_send
	1300
[1274]	1301	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
[1255]	1302	then
[1289]	1303	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
[1255]	1304	echo "#!/bin/bash" >> $job_to_send
	1305	echo "#PBS -N job_protocol_transfer" >> $job_to_send
	1306	echo "#PBS -l walltime=00:30:00" >> $job_to_send
[1262]	1307	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
[1255]	1308	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1309	echo "#PBS -j oe" >> $job_to_send
	1310	echo " " >> $job_to_send
	1311	echo "set -x" >> $job_to_send
[1468]	1312	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1255]	1313	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1314	echo "%%END%%" >> $job_to_send
	1315
[1099]	1316	elif [[ $remote_host = lcflow ]]
	1317	then
[1289]	1318	echo "cat > scpjob.${identifier}.tmp << %%END%%" >> $job_to_send
[1099]	1319	echo "#!/bin/bash" >> $job_to_send
	1320	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
	1321	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
	1322	echo "SGEPREFIX -cwd" >> $job_to_send
	1323	echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
[1202]	1324	echo "SGEPREFIX -l h_vmem=500M" >> $job_to_send
	1325	echo "SGEPREFIX -l excl_flow=false" >> $job_to_send
[1099]	1326	echo "SGEPREFIX -j y" >> $job_to_send
[1289]	1327	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$identifier" >> $job_to_send
[1099]	1328	echo " " >> $job_to_send
	1329	echo "set -x" >> $job_to_send
	1330	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
	1331	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
	1332	echo "" >> $job_to_send
[1468]	1333	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1099]	1334	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
[1289]	1335	echo "rm -f scpjob.${identifier}" >> $job_to_send
[1099]	1336	echo "%%END%%" >> $job_to_send
[1289]	1337	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${identifier}.tmp > scpjob.${identifier}" >> $job_to_send
	1338	echo "rm -f scpjob.${identifier}.tmp" >> $job_to_send
[1468]	1339	elif [[ $remote_host = lcxe6 ]]
	1340	then
	1341	echo "cat > scpjob.${identifier} << %%END%%" >> $job_to_send
	1342	echo "#!/bin/ksh" >> $job_to_send
	1343	echo "#PBS -N job_protocol_transfer" >> $job_to_send
	1344	echo "#PBS -l walltime=00:30:00" >> $job_to_send
	1345	echo "#PBS -A $project_account" >> $job_to_send
	1346	echo "#PBS -l mppwidth=1" >> $job_to_send
	1347	echo "#PBS -l mppnppn=1" >> $job_to_send
	1348	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1349	echo "#PBS -j oe" >> $job_to_send
	1350	echo " " >> $job_to_send
	1351	echo "set -x" >> $job_to_send
	1352	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1353	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1354	echo "%%END%%" >> $job_to_send
[1]	1355	else
	1356
[1289]	1357	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
[1]	1358	echo "# @\\\$-q $return_queue" >> $job_to_send
	1359	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
	1360	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
	1361	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
	1362	then
	1363	echo "# @\$-l mpp_p=0" >> $job_to_send
	1364	fi
	1365	echo '# @\$-lF 10mb' >> $job_to_send
	1366	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
	1367	echo '# @\\\$-eo' >> $job_to_send
	1368	echo " " >> $job_to_send
	1369	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1370	then
	1371	echo "set +vx" >> $job_to_send
	1372	echo ". .profile" >> $job_to_send
	1373	fi
	1374	echo "set -x" >> $job_to_send
[1468]	1375	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
[1]	1376	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1377	echo "%%END%%" >> $job_to_send
	1378	fi
	1379
	1380	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1381	then
[1289]	1382	echo "llsubmit scpjob.$identifier" >> $job_to_send
[1274]	1383	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
[1255]	1384	then
[1289]	1385	echo "msub -q $return_queue scpjob.$identifier" >> $job_to_send
[1]	1386	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1387	then
[1289]	1388	echo "qsub -J n scpjob.$identifier" >> $job_to_send
[1]	1389	elif [[ $remote_host = t3es ]]
	1390	then
[1289]	1391	echo "qsub -J n -s /bin/ksh scpjob.$identifier" >> $job_to_send
[1043]	1392	elif [[ $remote_host = lckiaps ]]
	1393	then
[1289]	1394	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
[1468]	1395	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"$submcom ${job_catalog}/scpjob.$identifier\" " >> $job_to_send
[1289]	1396	echo "rm ${job_catalog}/scpjob.$identifier" >> $job_to_send
[1099]	1397	elif [[ $remote_host = lckyu* ]]
[1090]	1398	then
[1468]	1399	echo "scp $PORTOPT scpjob.$identifier ${remote_username}@${remote_address}:job_queue" >> $job_to_send
	1400	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"cd job_queue; $submcom scpjob.$identifier; rm scpjob.$identifier\" " >> $job_to_send
[1099]	1401	elif [[ $remote_host = lcflow ]]
	1402	then
[1289]	1403	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
[1468]	1404	echo "/usr/bin/ssh ${remote_username}@${remote_address} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$identifier\" " >> $job_to_send
[1]	1405	else
[1289]	1406	echo "$submcom scpjob.$identifier" >> $job_to_send
[1]	1407	fi
[1043]	1408	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
[622]	1409	then
[1289]	1410	echo "rm scpjob.$identifier" >> $job_to_send
[622]	1411	fi
[1]	1412	if [[ $remote_host = nech ]]
	1413	then
	1414	echo "cd -" >> $job_to_send
	1415	fi
	1416	else
[1468]	1417	# echo "ftpcopy -d $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1289]	1418	# ??? funktioniert das ÃŒberhaupt noch ???
[1468]	1419	echo "nohup ftpcopy -d -w 15 $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
[1]	1420	fi
	1421	echo "set -x" >> $job_to_send
	1422	echo " ' exit" >> $job_to_send
	1423	echo "set -x" >> $job_to_send
	1424	fi
	1425
	1426
	1427
[1289]	1428	# APPEND THE JOB-FILE (CREATE BY mrun) TO THE JOB-DIRECTIVES GENERATED ABOVE
[1]	1429	cat $file_to_send >> $job_to_send
[69]	1430
[1]	1431	if [[ $remote_host = ibm ]]
	1432	then
	1433	echo " " >> $job_to_send
	1434	echo "exit" >> $job_to_send
	1435	fi
[635]	1436
[1289]	1437	# REMOVE JOB-FILE
[1099]	1438	if [[ $remote_host = lctit \|\| $remote_host = ibmku \|\| $remote_host = lcflow ]]
[69]	1439	then
	1440	echo " " >> $job_to_send
	1441	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
	1442	fi
[1]	1443
	1444
[1289]	1445	# TRANSFER JOB TO THE TARGET HOST (JOB-DIRECTORY)
[1]	1446	if [[ $no_submit = false ]]
	1447	then
	1448	if [[ $remote_host != $local_host ]]
	1449	then
	1450	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
[1289]	1451	if [[ $remote_host = ibms ]] # ssh on ibms cannot handle "~/"
[1]	1452	then
[82]	1453	job_catalog_save=$job_catalog
	1454	job_catalog=job_queue
	1455	elif [[ $remote_host = nech ]]
	1456	then
	1457	job_catalog_save=$job_catalog
	1458	job_catalog=/hpf/b/${remote_user}/job_queue
	1459	fi
[1096]	1460	if [[ $remote_host = nech ]]
[82]	1461	then
[1289]	1462	# FILES CAN ONLY BE TRANSFERED VIA DKRZ'S ARCHIVE-SERVER
[1094]	1463	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
[1]	1464	else
[1468]	1465	scp $PORTOPT $job_to_send ${remote_user}@${remote_address}:${job_catalog}/$job_on_remhost
[1]	1466	fi
[82]	1467	if [[ $? = 1 ]]
	1468	then
	1469	locat=scp; exit
	1470	fi
	1471	if [[ $remote_host = ibms ]]
	1472	then
	1473	job_catalog=$job_catalog_save
	1474	fi
[1]	1475	[[ $verify = true ]] && printf "\n >>> finished\n"
	1476	else
	1477	eval job_catalog=$job_catalog
	1478	cp $job_to_send ${job_catalog}/$job_on_remhost
	1479	fi
	1480
	1481
	1482
[1289]	1483	# START NQS- / LOADLEVELER-JOB
[1]	1484	if [[ $remote_host != $local_host ]]
	1485	then
	1486	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
[635]	1487
[1289]	1488	if [[ $remote_host = ibmku ]]
[1]	1489	then
[1468]	1490	ssh $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
[1099]	1491	elif [[ $remote_host = lcflow ]]
	1492	then
[1468]	1493	/usr/bin/ssh $SSH_PORTOPT $remote_address -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
[1]	1494	else
[1468]	1495	ssh $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
[82]	1496	fi
[1]	1497
	1498	[[ $verify = true ]] && printf " >>> o.k.\n"
	1499	else
	1500	cd $job_catalog
[1289]	1501	if [[ $(echo $local_host \| cut -c1-3) = ibm \|\| $(echo $local_host \| cut -c1-6) = lccray ]]
[1]	1502	then
	1503	eval $submcom $job_on_remhost
[1289]	1504	elif [[ $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyu* ]]
[108]	1505	then
[635]	1506	chmod u+x $job_on_remhost
[108]	1507	eval $submcom $job_on_remhost
[1]	1508	elif [[ $local_host = nech ]]
	1509	then
	1510	if [[ $queue = default ]]
	1511	then
[799]	1512	eval $submcom $job_on_remhost
[1]	1513	else
[799]	1514	eval $submcom -q $queue $job_on_remhost
[1]	1515	fi
	1516	else
	1517	qsub $job_on_remhost
	1518	fi
[622]	1519
[1289]	1520	# JOBFILE MUST NOT BE DELETED ON lctit/ibmku/lcflow. THIS WILL BE DONE
	1521	# AT THE END OF THE JOB
[1099]	1522	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
[622]	1523	then
	1524	rm $job_on_remhost
	1525	fi
[1]	1526	cd - > /dev/null
	1527	fi
	1528	fi
	1529
	1530
	1531
[1289]	1532	# FINAL ACTIONS
[1]	1533	if [[ $no_submit = false ]]
	1534	then
[1099]	1535	rm -f $job_to_send
[1]	1536	fi
[1266]	1537	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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