Changeset 1099 for palm/trunk/SCRIPTS/subjob
- Timestamp:
- Feb 10, 2013 1:47:43 AM (11 years ago)
- File:
-
- 1 edited
-
palm/trunk/SCRIPTS/subjob (modified) (22 diffs)
Legend:
- Unmodified
- Added
- Removed
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palm/trunk/SCRIPTS/subjob
r1096 r1099 23 23 # Current revisions: 24 24 # ------------------ 25 # 25 # adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka) 26 # and for Forwind cluster (lcflow) 26 27 # 27 28 # Former revisions: … … 34 35 # 35 36 # 2013-02-02 07:06:13Z raasch 36 # adjustments for Kyushu-University computing center (lckyut )37 # adjustments for Kyushu-University computing center (lckyut - tatara) 37 38 # old changelog messages removed 38 39 # … … 128 129 (elephanta) local_addres=130.75.105.6; local_host=lcmuk;; 129 130 (fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;; 131 (flow01) local_addres=10.141.255.71; local_host=lcflow;; 132 (flow02) local_addres=10.141.255.72; local_host=lcflow;; 130 133 (node*) local_addres=165.132.26.61 local_host=lck;; 131 134 # (node*) local_addres=210.219.61.8 local_host=lckordi;; … … 135 138 (gregale) local_addres=130.75.105.109; local_host=lcmuk;; 136 139 (hababai) local_addres=130.75.105.108; local_host=lcmuk;; 140 (hayaka*) local_addres=133.5.4.33; local_host=lckyuh;; 137 141 (hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxe6;; 138 142 (hd1) local_addres=130.75.4.104; local_host=lcsgih;; … … 150 154 (login*) local_addres=118.128.66.223; local_host=lckiaps;; 151 155 (maestro) local_addres=130.75.105.2; local_host=lcmuk;; 156 (meller) local_addres=134.106.74.155; local_host=lcfor;; 152 157 (meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;; 153 158 (hexagon*) local_addres=129.177.20.113; local_host=lcxe6;; … … 156 161 (ostria) local_addres=130.75.105.106; local_host=lcmuk;; 157 162 (paesano) local_addres=130.75.105.46; local_host=lcmuk;; 163 (pcj*) local_addres=172.31.120.1; local_host=lckyut;; 158 164 (pingui) local_addres=134.106.74.118; local_host=lcfor;; 159 165 (quanero) local_addres=130.75.105.107; local_host=lcmuk;; … … 297 303 (ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;; 298 304 (lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;; 305 (lcflow) remote_addres=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;; 299 306 (lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;; 300 307 (lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;; … … 303 310 (lckiaps) remote_addres=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;; 304 311 (lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;; 312 (lckyuh) remote_addres=133.5.4.33; submcom=/usr/bin/pjsub;; 305 313 (lckyut) remote_addres=133.5.4.37; submcom=/usr/bin/pjsub;; 306 314 (lcsb) remote_addres=147.46.30.151; submcom=/usr/torque/bin/qsub;; … … 349 357 (*) error=true;; 350 358 esac;; 359 (lcflow) case $ndq in 360 (cfd_lom_long.q|cfd_him_long.q|cfd_lom_serl.q|cfd_lom_shrt.q|cfd_him_shrt.q) error=false;; 361 (*) error=true;; 362 esac;; 351 363 (lckiaps) case $ndq in 352 364 (express|normal) error=false;; … … 355 367 (lckyoto) case $ndq in 356 368 (eh|ph) error=false;; 369 (*) error=true;; 370 esac;; 371 (lckyuh) case $ndq in 372 (fx-dbg|fx-single|fx-small|fx-middle|fx-large) error=false;; 357 373 (*) error=true;; 358 374 esac;; … … 753 769 fi 754 770 771 elif [[ $remote_host = lcflow ]] 772 then 773 if [ $memory -gt 1900 ]; then 774 use_himem="" 775 else 776 use_himem="#" 777 fi 778 if [[ $numprocs != 0 ]] 779 then 780 pe_set="#$ -pe impi $numprocs" 781 else 782 pe_set="#$ -pe impi 1" 783 fi 784 if [[ $queue = default ]] 785 then 786 queue_set="" 787 else 788 queue_set="#$ -q $queue" 789 fi 790 [[ "$disc_space" = "" ]] && disc_space=50 791 792 cat > $job_to_send << %%END%% 793 #!/bin/bash 794 #$ -S /bin/bash 795 #$ -N $job_name 796 #$ -cwd 797 #$ -l h_rt=$timestring 798 #$ -l h_vmem=${memory}M 799 #$ -o $remote_dayfile 800 #$ -j y 801 $pe_set 802 #$ -R y 803 ${use_himem}#$ -l highmem=true 804 #$ -l h_fsize=${disc_space}G 805 $queue_set 806 807 %%END%% 808 755 809 elif [[ $remote_host = lck || $remote_host = lckordi || $remote_host = lcsb ]] 756 810 then … … 1029 1083 fi 1030 1084 1031 elif [[ $remote_host = lckyu t]]1085 elif [[ $remote_host = lckyuh ]] 1032 1086 then 1033 1087 cat > $job_to_send << %%END%% 1034 1088 #!/bin/bash 1089 #PJM -L "rscgrp=$queue" 1090 #PJM -L "node=$nodes" 1091 #PJM --mpi "proc=$numprocs" 1092 #PJM -L "elapse=$timestring" 1093 #PJM -o $remote_dayfile 1094 #PJM -j 1095 #PJM -X 1096 #PJM --no-stging 1097 1098 export LANG=en_US.UTF-8 1099 %%END%% 1100 1101 elif [[ $remote_host = lckyut ]] 1102 then 1103 cat > $job_to_send << %%END%% 1104 #!/bin/bash 1105 #PJM -L "rscgrp=$queue" 1035 1106 #PJM -L "vnode=$numprocs" 1036 1107 #PJM -L "vnode-core=1" 1037 #PJM -L "rscgrp=$queue"1038 #PJM --no-stging1039 1108 #PJM -L "elapse=$timestring" 1040 1109 #PJM --mpi proc=$numprocs 1041 1110 #PJM -o $remote_dayfile 1042 1111 #PJM -j 1112 #PJM -X 1113 #PJM --no-stging 1043 1114 1044 1115 export LANG=en_US.UTF-8 … … 1162 1233 echo "trap '" >> $job_to_send 1163 1234 echo "set +vx" >> $job_to_send 1164 if [[ $(echo $remote_host | cut -c1-3) = ibm || $(echo $remote_host | cut -c1-5) = lcsgi || $(echo $remote_host | cut -c1-3) = nec || $remote_host = lc kiaps || $remote_host = lckyut]]1235 if [[ $(echo $remote_host | cut -c1-3) = ibm || $(echo $remote_host | cut -c1-5) = lcsgi || $(echo $remote_host | cut -c1-3) = nec || $remote_host = lcflow || $remote_host = lckiaps || $remote_host = lckyu* ]] 1165 1236 then 1166 1237 if [[ $remote_host = ibmh ]] … … 1188 1259 then 1189 1260 return_queue=express 1261 elif [[ $remote_host = lckyuh ]] 1262 then 1263 return_queue=cx-single 1190 1264 elif [[ $remote_host = lckyut ]] 1191 1265 then … … 1255 1329 echo "%%END%%" >> $job_to_send 1256 1330 1331 elif [[ $remote_host = lckyuh ]] 1332 then 1333 echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send 1334 echo "#!/bin/bash" >> $job_to_send 1335 echo "#PJM -L \"node=1\"" >> $job_to_send 1336 echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send 1337 echo "#PJM --no-stging" >> $job_to_send 1338 echo "#PJM -L \"elapse=30:00\"" >> $job_to_send 1339 echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send 1340 echo "#PJM -j" >> $job_to_send 1341 echo " " >> $job_to_send 1342 echo "export LANG=en_US.UTF-8" >> $job_to_send 1343 echo "set -x" >> $job_to_send 1344 echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send 1345 echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send 1346 echo "%%END%%" >> $job_to_send 1347 1257 1348 elif [[ $remote_host = lckyut ]] 1258 1349 then … … 1288 1379 echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send 1289 1380 echo "%%END%%" >> $job_to_send 1381 1382 elif [[ $remote_host = lcflow ]] 1383 then 1384 echo "cat > scpjob.${kennung}.tmp << %%END%%" >> $job_to_send 1385 echo "#!/bin/bash" >> $job_to_send 1386 echo "SGEPREFIX -S /bin/bash" >> $job_to_send 1387 echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send 1388 echo "SGEPREFIX -cwd" >> $job_to_send 1389 echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send 1390 echo "SGEPREFIX -l h_vmem=100M" >> $job_to_send 1391 echo "SGEPREFIX -j y" >> $job_to_send 1392 echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$kennung" >> $job_to_send 1393 echo " " >> $job_to_send 1394 echo "set -x" >> $job_to_send 1395 echo "export PALM_BIN=$PALM_BIN" | sed -e 's:'$HOME':$HOME:' >> $job_to_send 1396 echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send 1397 echo "" >> $job_to_send 1398 echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send 1399 echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send 1400 echo "rm -f scpjob.${kennung}" >> $job_to_send 1401 echo "%%END%%" >> $job_to_send 1402 echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${kennung}.tmp > scpjob.${kennung}" >> $job_to_send 1403 echo "rm -f scpjob.${kennung}.tmp" >> $job_to_send 1290 1404 1291 1405 else … … 1334 1448 echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"$submcom ${job_catalog}/scpjob.$kennung\" " >> $job_to_send 1335 1449 echo "rm ${job_catalog}/scpjob.$kennung" >> $job_to_send 1336 elif [[ $remote_host = lckyu t]]1450 elif [[ $remote_host = lckyu* ]] 1337 1451 then 1338 1452 echo "scp $PORTOPT scpjob.$kennung ${remote_username}@${remote_addres}:job_queue" >> $job_to_send 1339 1453 echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"cd job_queue; $submcom scpjob.$kennung; rm scpjob.$kennung\" " >> $job_to_send 1454 elif [[ $remote_host = lcflow ]] 1455 then 1456 echo "mv scpjob.$kennung $job_catalog" >> $job_to_send 1457 echo "ssh ${remote_username}@${remote_addres} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$kennung\" " >> $job_to_send 1340 1458 else 1341 1459 echo "$submcom scpjob.$kennung" >> $job_to_send … … 1370 1488 1371 1489 # remove job file 1372 if [[ $remote_host = lctit || $remote_host = ibmku ]]1490 if [[ $remote_host = lctit || $remote_host = ibmku || $remote_host = lcflow ]] 1373 1491 then 1374 1492 echo " " >> $job_to_send … … 1440 1558 then 1441 1559 ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost" 1560 elif [[ $remote_host = lcflow ]] 1561 then 1562 ssh $SSH_PORTOPT $remote_addres -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost" 1442 1563 else 1443 1564 ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost" … … 1450 1571 then 1451 1572 eval $submcom $job_on_remhost 1452 elif [[ $local_host = lcfimm || $local_host = lctit || $localhost = lcxe6 || $localhost = lck || $localhost = lckordi || $localhost = lcyon || $localhost = lcsb || $localhost = lckyu t]]1573 elif [[ $local_host = lcfimm || $local_host = lctit || $localhost = lcxe6 || $localhost = lck || $localhost = lckordi || $localhost = lcyon || $localhost = lcsb || $localhost = lckyu* ]] 1453 1574 then 1454 1575 chmod u+x $job_on_remhost … … 1469 1590 # Jobfile must not be deleted on lctit/ibmku!! This will be done 1470 1591 # only at the end of the job. 1471 if [[ $local_host != lctit && $local_host != ibmku ]]1592 if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]] 1472 1593 then 1473 1594 rm $job_on_remhost … … 1483 1604 if [[ $no_submit = false ]] 1484 1605 then 1485 rm $job_to_send1606 rm -f $job_to_send 1486 1607 fi 1487 1608 [[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"
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