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source: palm/trunk/SCRIPTS/subjob @ 1469

Last change on this file since 1469 was 1469, checked in by maronga, 10 years ago
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1	#!/bin/ksh
2
3	# subjob - script for automatic generation and submission of batch-job files
4	# for various batch queuing systems
5
6	#--------------------------------------------------------------------------------#
7	# This file is part of PALM.
8	#
9	# PALM is free software: you can redistribute it and/or modify it under the terms
10	# of the GNU General Public License as published by the Free Software Foundation,
11	# either version 3 of the License, or (at your option) any later version.
12	#
13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
16	#
17	# You should have received a copy of the GNU General Public License along with
18	# PALM. If not, see <http://www.gnu.org/licenses/>.
19	#
20	# Copyright 1997-2014 Leibniz Universitaet Hannover
21	#--------------------------------------------------------------------------------#
22	#
23	# Current revisions:
24	# ------------------
25	#
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: subjob 1469 2014-09-24 14:09:56Z maronga $
30	#
31	# 1468 2014-09-24 14:06:57Z maronga
32	# Typo removed (addres->address)
33	# Adjustments for lcxe6
34	#
35	# 1452 2014-08-22 09:41:06Z heinze
36	# local hosts for blizzard added
37	#
38	# 1450 2014-08-21 07:31:51Z heinze
39	# HLRN-III (lccrayb): testq queue adjusted to mpp1testq
40	#
41	# 1442 2014-07-28 07:09:10Z raasch
42	# HLRN-III (lccrayb/lccrayh) queues adjusted
43	#
44	# 1378 2014-04-28 06:04:58Z raasch
45	# -et option added for lctit
46	#
47	# 1350 2014-04-04 13:01:30Z maronga
48	# location of qsub updated for lcxe6
49	#
50	# 1289 2014-03-04 07:12:34Z raasch
51	# German comments translated to English
52	# fimm-, necriam-, scirocco-, ibmy-, and sgi-specific code removed
53	#
54	# 1279 2014-01-28 12:10:14Z raasch
55	# node calculation modified due to changes in mrun (tasks_per_node must not be
56	# an integral divisor of numprocs any more)
57	#
58	# 1274 2014-01-09 13:14:54Z heinze
59	# adjustments for lccrayh
60	#
61	# 1266 2013-12-11 12:07:34Z heinze
62	# further adjustments for lccrayb (use msub instead of qsub)
63	#
64	# 1264 2013-12-09 12:46:09Z fricke
65	# Bugfix: Using number of nodes instead of number of processors (lccrayb)
66	#
67	# 1262 2013-12-09 10:57:20Z fricke
68	# further adjustments for lccrayb
69	#
70	# 1260 2013-12-04 12:48:04Z raasch
71	# jaboticaba admitted
72	#
73	# 1255 2013-11-07 14:43:35Z raasch
74	# further adjustments for lccrayb
75	#
76	# 1224 2013-09-16 07:27:23Z raasch
77	# first adjustments for lccrayb
78	#
79	# 1202 2013-07-10 16:22:07Z witha
80	# adjustments for Forwind cluster (lcflow)
81	#
82	# 1199 2013-07-05 14:52:22Z raasch
83	# adjustments for CSC Helsinki (lccrayf)
84	#
85	# use of cluster/express queue enabled (ibmh)
86	# vinessa added (imuk)
87	#
88	# 1103 2013-02-20 02:15:53Z raasch
89	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
90	# instead typeset -L/R),
91	# further adjustments for lckyuh
92	#
93	# 2013-02-10 01:47:43Z raasch
94	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
95	# and for Forwind cluster (lcflow)
96	#
97	# 1094 2013-02-03 01:52:12Z raasch
98	# new option -P for explicit setting of ssh/scp port,
99	# decalpha parts (yonsei) removed
100	#
101	# 2013-02-02 07:06:13Z raasch
102	# adjustments for Kyushu-University computing center (lckyut - tatara)
103	# old changelog messages removed
104	#
105	# 1046 2012-11-09 14:38:45Z maronga
106	# code put under GPL (PALM 3.9)
107	#
108	# 08/07/94 - Siggi - first version finished
109	# 29/06/94 - Siggi - script development started
110	#--------------------------------------------------------------------------------#
111	# subjob - script for automatic generation and submission of batch-job files
112	# for various batch queuing systems
113	#--------------------------------------------------------------------------------#
114
115
116	# VARIABLE-DECLARATIONS AND DEFAULT VALUES
117	delete_dayfile=false
118	email_notification=none
119	group_number=none
120	locat=normal
121	no_default_queue=none
122	no_submit=false
123	job_catalog="~/job_queue"
124	job_name=none
125	local_user=$LOGNAME
126	node_usage=shared
127	numprocs=0
128	punkte="..........................................................."
129	submcom=qsub
130	queue=default
131	remote_host=none
132	remote_user=""
133	verify=true
134
135	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
136	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
137
138
139
140	# ERROR HANDLING
141	# IN CASE OF EXIT:
142	trap 'if [[ $locat != normal ]]
143	then
144	case $locat in
145	(option) printf "\n --> available optios can be displayed"
146	printf " by typing:"
147	printf "\n \"subjob ?\" \n";;
148	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
149	(*) printf "\n +++ unknown error"
150	printf "\n please inform S. Raasch!\n"
151	esac
152	[[ -f $job_to_send ]] && rm $job_to_send
153	printf "\n\n+++ SUBJOB killed \n\n"
154	fi' exit
155
156
157	# IN CASE OF TERMINAL-BREAK:
158	trap '[[ -f $job_to_send ]] && rm $job_to_send
159	printf "\n\n+++ SUBJOB killed \n\n"
160	exit
161	' 2
162
163
164
165
166	# DETERMINE NAME OF LOCAL HOST
167	local_host=$(hostname)
168
169
170
171	# SET HOST-SPECIFIC VARIABLES VEREINBAREN (CHECK, IF LOCAL HOST
172	# IS ADMITTED AT ALL)
173	# NOTE: ONE OF THE ENTRIES FOR "lck" OR "lckordi" ALWAYS HAS TO BE
174	# COMMENT OUT, BECAUSE THE HOSTNAME (node*) IS SAME FOR BOTH MACHINES
175	case $local_host in
176	(ambiel-lx) local_address=134.106.74.48; local_host=lcfor;;
177	(atmos) local_address=172.20.25.35; local_host=lcide;;
178	(austru) local_address=130.75.105.128; local_host=lcmuk;;
179	(autan) local_address=130.75.105.57; local_host=lcmuk;;
180	(bora) local_address=130.75.105.103; local_host=lcmuk;;
181	(b04*) local_address=133.5.4.33; local_host=lckyuh;;
182	(blizzard1\|p*) local_address=136.172.40.15; local_host=ibmh;;
183	(blizzard2\|p*) local_address=136.172.40.16; local_host=ibmh;;
184	(blogin\|bxc) local_address=130.73.233.1; local_host=lccrayb;;
185	(hlogin\|hxc) local_address=130.75.4.1; local_host=lccrayh;;
186	(breva) local_address=130.75.105.98; local_host=lcmuk;;
187	(buran) local_address=130.75.105.58; local_host=lcmuk;;
188	(caurus) local_address=130.75.105.19; local_host=lcmuk;;
189	(climate*) local_address=165.132.26.68; local_host=lcyon;;
190	(clogin*) local_address=86.50.166.21; local_host=lccrayf;;
191	(cs*) local_address=136.172.44.131; local_host=nech;;
192	(elephanta) local_address=130.75.105.6; local_host=lcmuk;;
193	(flow01) local_address=10.141.255.71; local_host=lcflow;;
194	(flow02) local_address=10.141.255.72; local_host=lcflow;;
195	(node*) local_address=165.132.26.61 local_host=lck;;
196	# (node*) local_address=210.219.61.8 local_host=lckordi;;
197	(gaia*) local_address=150.183.146.24; local_host=ibmkisti;;
198	(gallego) local_address=130.75.105.10; local_host=lcmuk;;
199	(gregale) local_address=130.75.105.109; local_host=lcmuk;;
200	(hababai) local_address=130.75.105.108; local_host=lcmuk;;
201	(hayaka*) local_address=133.5.4.33; local_host=lckyuh;;
202	(hexagon.bccs.uib.no) local_address=129.177.20.113; local_host=lcxe6;;
203	(hx*) local_address=133.3.51.11; local_host=lckyoto;;
204	(inferno) local_address=130.75.105.5; local_host=lcmuk;;
205	(irifi) local_address=130.75.105.104; local_host=lcmuk;;
206	(jaboticaba) local_address=150.163.25.181; local_host=lcbr;;
207	(sno) local_address=130.75.105.113; local_host=lcmuk;;
208	(levanto) local_address=130.75.105.45; local_host=lcmuk;;
209	(login*) local_address=118.128.66.223; local_host=lckiaps;;
210	(maestro) local_address=130.75.105.2; local_host=lcmuk;;
211	(meller) local_address=134.106.74.155; local_host=lcfor;;
212	(meteo-login*) local_address=193.166.211.144;local_host=lcxt5m;;
213	(hexagon*) local_address=129.177.20.113; local_host=lcxe6;;
214	(nobel*) local_address=150.183.5.101; local_host=ibms;;
215	(orkan) local_address=130.75.105.3; local_host=lcmuk;;
216	(ostria) local_address=130.75.105.106; local_host=lcmuk;;
217	(paesano) local_address=130.75.105.46; local_host=lcmuk;;
218	(pcj*) local_address=172.31.120.1; local_host=lckyut;;
219	(pingui) local_address=134.106.74.118; local_host=lcfor;;
220	(quanero) local_address=130.75.105.107; local_host=lcmuk;;
221	(rte*) local_address=133.5.185.60; local_host=lcrte;;
222	(shiokaze-lx) local_address=134.106.74.123; local_host=lcfor;;
223	(sisu-login*) local_address=86.50.166.21; local_host=lccrayf;;
224	(solano) local_address=130.75.105.110; local_host=lcmuk;;
225	(sugoka*) local_address=172.31.120.1; local_host=lckyut;;
226	(t2a*) local_address=10.1.6.165; local_host=lctit;;
227	(urban*) local_address=147.46.30.151 local_host=lcsb;;
228	(vinessa) local_address=130.75.105.112; local_host=lcmuk;;
229	(vorias) local_address=172.20.25.43; local_host=lcmuk;;
230	(*.cc.kyushu-u.ac.jp) local_address=133.5.4.129; local_host=ibmku;;
231	(*) printf "\n +++ \"$local_host\" unknown";
232	printf "\n please contact the PALM group at IMUK";
233	locat=parameter; exit;;
234	esac
235
236
237
238	# BY DEFAULT, THE REMOTE HOST IS THE LOCAL HOST
239	remote_host=$local_host
240
241
242
243
244	# READ THE SHELLSCRIPT-OPTIONS
245	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
246	do
247	case $option in
248	(c) job_catalog=$OPTARG;;
249	(d) delete_dayfile=true;;
250	(D) no_submit=true;;
251	(e) email_notification=$OPTARG;;
252	(g) group_number=$OPTARG;;
253	(h) remote_host=$OPTARG;;
254	(m) memory=$OPTARG;;
255	(n) job_name=$OPTARG;;
256	(N) node_usage=$OPTARG;;
257	(O) threads_per_task=$OPTARG;;
258	(P) scp_port=$OPTARG;;
259	(q) no_default_queue=$OPTARG;;
260	(t) cputime=$OPTARG;;
261	(T) tasks_per_node=$OPTARG;;
262	(u) remote_user=$OPTARG;;
263	(v) verify=false;;
264	(X) numprocs=$OPTARG;;
265	(\?) printf "\n +++ Option $OPTARG unknown \n";
266	locat=option; exit;;
267	esac
268	done
269
270
271	# GET THE NAME OF THE JOBFILE AS NEXT ARGUMENT
272	(( to_shift = $OPTIND - 1 ))
273	shift $to_shift; file_to_send=$1
274
275
276	# OUTPUT OF SHORT DESCRIPTION OF SCRIPT-OPTIONS
277	if [ "$1" = "?" ]
278	then
279	(printf "\n *** subjob can be called as follows:\n"
280	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
281	printf "\n Description of available options:\n"
282	printf "\n Option Description Default-Value"
283	printf "\n -c job-input- and output-catalog ~/job_queue"
284	printf "\n -d no job-protocol will be created ---"
285	printf "\n -D only the job-file will be created ---"
286	printf "\n -h execution host, available hosts: $remote_host"
287	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, lc...,"
288	printf "\n lckiaps, lctit, nech"
289	printf "\n -m memory demand per process in MByte ---"
290	printf "\n -n jobname <jobdatei>"
291	printf "\n -O threads per task (for OpenMP usage) 1"
292	printf "\n -P ssh/scp port default port"
293	printf "\n -q job-queue to be used default"
294	printf "\n -t allowed cpu-time in seconds ---"
295	printf "\n -T tasks per node (on parallel hosts) ---"
296	printf "\n -u username on execution host from .netrc"
297	printf "\n -v no prompt for confirmation ---"
298	printf "\n -X # of processors (on parallel hosts) 1"
299	printf "\n "
300	printf "\n The only possible positional parameter is <jobfile>:"
301	printf "\n The complete NQS-job must be provided here."
302	printf "\n <jobfile>=? creates this outline\n\n") \| more
303	exit
304	fi
305
306
307
308	# CHECK, IF JOB-FILE HAS BEEN GIVEN AS ARGUMENT AND IF THE FILE ITSELF EXISTS
309	if [[ "$file_to_send" = "" ]]
310	then
311	printf "\n +++ job-file missing"
312	locat=parameter; exit
313	else
314	if [[ -f $file_to_send ]]
315	then
316	true
317	else
318	printf "\n +++ job-file: "
319	printf "\n $file_to_send"
320	printf "\n does not exist"
321	locat=parameter; exit
322	fi
323	fi
324
325
326
327	# IF NO JOBNAME HAS BEEN GIVEN, JOBNAME IS SET TO THE NAME OF THE JOB-FILE,
328	# PROVIDED THAT THE JOB-FILE NAME DOES NOT CONTAIN ANY PATH
329	if [[ $job_name = none ]]
330	then
331	job_name=$file_to_send
332	fi
333	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
334	then
335	printf "\n +++ job-file name: "
336	printf "\n $job_name"
337	printf "\n must not contain \"/\"-characters"
338	locat=parameter; exit
339	fi
340
341
342
343
344	# SET HOST-SPECIFIC QUANTITIES, OR TERMINATE IN CASE OF UNKNOWN HOST,
345	# OR IF NO HOST HAS BEEN GIVEN
346	if [[ $remote_host = none ]]
347	then
348	printf "\n +++ host missing"
349	locat=option; exit
350	else
351	case $remote_host in
352	(ibm) queue=p690_standard; remote_address=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
353	(ibmh) queue=cluster; remote_address=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
354	(ibmkisti) queue=class.32plus; remote_address=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
355	(ibmku) queue=s4; remote_address=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
356	(ibms) queue=p_normal; remote_address=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
357	(lccrayb) queue=mpp1testq; remote_address=130.73.233.1; submcom=/opt/moab/7.2.6/bin/msub;;
358	(lccrayh) queue=mpp1testq; remote_address=130.75.4.1; submcom=/opt/moab/7.2.6/bin/msub;;
359	(lccrayf) queue=small; remote_address=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
360	(lcflow) remote_address=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;;
361	(lckyoto) remote_address=133.3.51.11; submcom=/thin/local/bin/qsub;;
362	(lck) remote_address=165.132.26.61; submcom=/usr/torque/bin/qsub;;
363	(lckiaps) remote_address=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
364	(lckordi) remote_address=210.219.61.8; submcom=/usr/torque/bin/qsub;;
365	(lckyuh) remote_address=133.5.4.33; submcom=/usr/bin/pjsub;;
366	(lckyut) remote_address=133.5.4.37; submcom=/usr/bin/pjsub;;
367	(lcsb) remote_address=147.46.30.151; submcom=/usr/torque/bin/qsub;;
368	(lctit) queue=S; remote_address=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
369	(lcxe6) remote_address=129.177.20.113; submcom=/opt/torque/default/bin/qsub;;
370	(lcxt5m) remote_address=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
371	(lcyon) remote_address=165.132.26.68; submcom=/usr/torque/bin/qsub;;
372	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_address=136.172.44.147; submcom="/usr/local/bin/qsub";;
373	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
374	locat=parameter; exit;;
375	esac
376	fi
377
378
379	# CHECK, IF A VALID QUEUE HAS BEEN GIVEN
380	if [[ $no_default_queue != none ]]
381	then
382	error=false
383	ndq=$no_default_queue
384	case $remote_host in
385	(ibm) case $ndq in
386	(p690_express\|p690_standard\|p690_long) error=false;;
387	(*) error=true;;
388	esac;;
389	(ibmh) case $ndq in
390	(cluster\|express) error=false;;
391	(*) error=true;;
392	esac;;
393	(ibmkisti) case $ndq in
394	(class.32plus\|class.1-2\|class.2-32) error=false;;
395	(*) error=true;;
396	esac;;
397	(ibmku) case $ndq in
398	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
399	(*) error=true;;
400	esac;;
401	(ibms) case $ndq in
402	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
403	(*) error=true;;
404	esac;;
405	(lccrayb) case $ndq in
406	(dataq\|mpp1q\|mpp1testq\|smp1q\|smp1testq\|specialm1q) error=false;;
407	(*) error=true;;
408	esac;;
409	(lccrayh) case $ndq in
410	(dataq\|mpp1q\|mpp1testq\|smp1q\|smp1testq\|specialm1q) error=false;;
411	(*) error=true;;
412	esac;;
413	(lccrayf) case $ndq in
414	(usup\|test*\|small\|large) error=false;;
415	(*) error=true;;
416	esac;;
417	(lcflow) case $ndq in
418	(cfd_lom_long.q\|cfd_him_long.q\|cfd_lom_serl.q\|cfd_lom_shrt.q\|cfd_him_shrt.q) error=false;;
419	(*) error=true;;
420	esac;;
421	(lckiaps) case $ndq in
422	(express\|normal) error=false;;
423	(*) error=true;;
424	esac;;
425	(lckyoto) case $ndq in
426	(eh\|ph) error=false;;
427	(*) error=true;;
428	esac;;
429	(lckyuh) case $ndq in
430	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
431	(*) error=true;;
432	esac;;
433	(lckyut) case $ndq in
434	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
435	(*) error=true;;
436	esac;;
437	(lctit) case $ndq in
438	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
439	(*) error=true;;
440	esac;;
441	(t3eb) case $ndq in
442	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
443	(*) error=true;;
444	esac;;
445	(t3eh) case $ndq in
446	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
447	(*) error=true;;
448	esac;;
449	(t3ej2\|t3ej5) case $ndq in
450	(low\|normal\|high) error=false;;
451	(*) error=true;;
452	esac;;
453	(t3es) case $ndq in
454	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
455	(*) error=true;;
456	esac;;
457	esac
458	if [[ $error = true ]]
459	then
460	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
461	locat=parameter; exit
462	else
463	queue=$no_default_queue
464	fi
465	fi
466
467
468
469	# CHECK THE CPU-TIME
470	# SPLIT TIME INTO HOURS, MINUTES, AND SECONDS
471	done=false
472	while [[ $done = false ]]
473	do
474	if (( $cputime <= 0 ))
475	then
476	printf "\n +++ wrong cpu-time or cpu-time missing"
477	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
478	printf "\n >>> "
479	read cputime 1>/dev/null 2>&1
480	else
481	done=true
482	fi
483	done
484	if [[ $remote_host = nech ]]
485	then
486	if (( tasks_per_node != 0 ))
487	then
488	(( cputime = cputime * tasks_per_node ))
489	elif [[ $numprocs != 0 ]]
490	then
491	(( cputime = cputime * numprocs ))
492	fi
493	fi
494	(( stunden = cputime / 3600 ))
495	(( resttime = cputime - stunden * 3600 ))
496	(( minuten = resttime / 60 ))
497	(( sekunden = resttime - minuten * 60 ))
498	timestring=${stunden}:${minuten}:${sekunden}
499
500
501
502	# CHECK THE MEMORY DEMAND
503	done=false
504	while [[ $done = false ]]
505	do
506	if (( memory <= 0 ))
507	then
508	printf "\n +++ wrong memory demand or memory demand missing"
509	printf "\n >>> Please type memory in MByte per process as INTEGER:"
510	printf "\n >>> "
511	read memory 1>/dev/null 2>&1
512	else
513	done=true
514	fi
515	done
516
517	if [[ $remote_host = nech ]]
518	then
519	if (( tasks_per_node != 0 ))
520	then
521	(( Memory = memory * tasks_per_node / 1000 ))
522	elif [[ $numprocs != 0 ]]
523	then
524	(( Memory = memory * numprocs / 1000 ))
525	else
526	(( Memory = memory / 1000 ))
527	fi
528	elif [[ $remote_host = lctit ]]
529	then
530	(( Memory = memory * tasks_per_node / 1000 ))
531	fi
532
533
534	# MEMORY DEMAND IN CASE OF OPENMP-USAGE ON IBM-SYSTEMS
535	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
536	then
537	(( memory = memory * threads_per_task ))
538	fi
539
540
541	# CALCULATE NUMBER OF REQUIRED NODES
542	if (( tasks_per_node != 0 ))
543	then
544	(( nodes = ( numprocs - 1 ) / ( tasks_per_node * threads_per_task ) + 1 ))
545	fi
546
547
548	# CALCULATE NUMBER OF PROCESSES PER NODE
549	(( processes_per_node = tasks_per_node * threads_per_task ))
550
551
552	# CALCULATE NUMBER OF MPI TASKS
553	(( mpi_tasks = numprocs / threads_per_task ))
554
555
556	# SET PORT NUMBER OPTION FOR CALLS OF ssh/scp, subjob AND batch_scp SCRIPTS
557	if [[ "$scp_port" != "" ]]
558	then
559	PORTOPT="-P $scp_port"
560	SSH_PORTOPT="-p $scp_port"
561	fi
562
563
564	# HEADER-OUTPUT
565	if [[ $verify = true ]]
566	then
567	printf "\n\n"
568	printf "#--------------------------------------------------------------# \n"
569	spalte1=SUBJOB;spalte2=$(date)
570	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
571	printf "\| \| \n"
572	printf "\| values of parameters/options: \| \n"
573	spalte1=$(echo local_host$punkte \| cut -c-20)
574	spalte2=$punkte$local_host
575	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
576	spalte1=$(echo remote_host$punkte \| cut -c-20)
577	spalte2=$punkte$remote_host
578	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
579	spalte1=$(echo queue$punkte \| cut -c-20)
580	spalte2=$punkte$queue
581	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
582	spalte1=$(echo memory$punkte \| cut -c-20)
583	spalte2="$punkte$memory mb"
584	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
585	spalte1=$(echo cputime$punkte \| cut -c-20)
586	spalte2="$punkte$cputime sec"
587	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
588	spalte1=$(echo job_name$punkte \| cut -c-20)
589	spalte2="$punkte$job_name"
590	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
591	printf "#--------------------------------------------------------------# \n\n"
592
593
594	# QUERY CHECK
595	antwort="dummy"
596	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
597	do
598	read antwort?" >>> continue (y/n) ? "
599	done
600	if [[ $antwort = n \|\| $antwort = N ]]
601	then
602	locat=verify; exit
603	fi
604	printf "\n"
605	fi
606
607
608
609	# GENERATE RANDOM IDENTIFIER, AND DETERMINE THE JOBNAME ON THE TARGET HOST
610	identifier=$RANDOM
611	job_on_remhost=${job_name}_${identifier}_$local_host
612	job_to_send=job_to_send_$identifier
613	if [[ $delete_dayfile = false ]]
614	then
615	remote_dayfile=${local_host}_${job_name}_result_$identifier
616	local_dayfile=${remote_host}_${job_name}
617	else
618	remote_dayfile=/dev/null
619	fi
620
621
622
623	# GENERATE THE BATCH-JOB SCRIPTS (FOR QUEUEING-SYSTEMS qsub/msub/LoadLeveler)
624	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
625	then
626
627	# GENERAL LOADLEVELER SETTINGS
628	execute_in_shell="#!/bin/ksh"
629	use_shell="# @ shell = /bin/ksh"
630	consumable_memory="ConsumableMemory($memory mb)"
631	class="# @ class = $queue"
632	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
633	network_to_use="# @ network.mpi = sn_all,shared,us"
634	data_limit="# @ data_limit = 1.76gb"
635	image_size="# @ image_size = 50"
636	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
637
638	if [[ $email_notification = none ]]
639	then
640	notify_user=""
641	else
642	notify_user="# @ notify_user = $email_notification"
643	if [[ $delete_dayfile = true ]]
644	then
645	notification='# @ notification = never'
646	fi
647	fi
648
649	if [[ $remote_host = ibmh ]]
650	then
651	data_limit=""
652	network_to_use=""
653	class="# @ class = $queue"
654	environment=""
655	rset="# @ rset = RSET_MCM_AFFINITY"
656	task_affinity="# @ task_affinity = core(1)"
657	elif [[ $remote_host = ibmkisti ]]
658	then
659	network_to_use="# @ network.MPI = sn_all,shared,US"
660	wall_clock_limit="# @ wall_clock_limit = $timestring"
661	if [[ $threads_per_task = 1 ]]
662	then
663	rset="# @ rset = RSET_MCM_AFFINITY"
664	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
665	fi
666	environment=""
667	use_shell=""
668	data_limit=""
669	image_size=""
670	elif [[ $remote_host = ibmku ]]
671	then
672	execute_in_shell="#!/usr/bin/ksh"
673	use_shell="# @ shell = /usr/bin/ksh"
674	consumable_memory=""
675	environment=""
676	network_to_use="# @ network.mpi = sn_all,shared,us"
677	data_limit=""
678	image_size=""
679	elif [[ $remote_host = ibms ]]
680	then
681	network_to_use="# @ network.mpi = csss,shared,us"
682	fi
683
684	cat > $job_to_send << %%END%%
685	$execute_in_shell
686	$use_shell
687
688	# @ job_type = parallel
689	# @ job_name = $job_name
690	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
691	# @ output = $remote_dayfile
692	# @ error = $remote_dayfile
693	$wall_clock_limit
694	$image_size
695	$class
696	$environment
697	$network_to_use
698	$data_limit
699	$rset
700	$mcm_affinity_options
701	$task_affinity
702	$notification
703	$notify_user
704
705	%%END%%
706
707	if (( nodes > 0 ))
708	then
709
710	if [[ $remote_host != ibmkisti ]]
711	then
712
713	cat >> $job_to_send << %%END%%
714	# @ node = $nodes
715	# @ tasks_per_node = $processes_per_node
716	# @ node_usage = $node_usage
717	# @ queue
718
719	%%END%%
720
721	else
722
723	cat >> $job_to_send << %%END%%
724	# @ total_tasks = $mpi_tasks
725	# @ blocking = unlimited
726	# @ queue
727
728	%%END%%
729
730	fi
731
732	else
733
734	cat >> $job_to_send << %%END%%
735	# @ blocking = unlimited
736	# @ total_tasks = $numprocs
737	# @ node_usage = $node_usage
738	# @ queue
739
740	%%END%%
741
742	fi
743
744	# WORKAROUND BECAUSE OF SILLY JOB FILTER ON ibmkisti
745	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
746	then
747	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
748	fi
749
750	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
751	then
752
753	cat > $job_to_send << %%END%%
754	#!/bin/ksh
755
756	# @ job_type = serial
757	# @ node_usage = $node_usage
758	# @ job_name = palm
759	# @ wall_clock_limit = ${timestring},$timestring
760	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
761	# @ output = $remote_dayfile
762	# @ error = $remote_dayfile
763	$class
764	$notification
765
766	# @ queue
767
768	%%END%%
769
770	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
771	then
772
773	if [[ $numprocs != 0 ]]
774	then
775	cat > $job_to_send << %%END%%
776	#!/bin/bash
777	#PBS -N $job_name
778	#PBS -l walltime=$timestring
779	#PBS -l nodes=$nodes:ppn=$processes_per_node
780	#PBS -o $remote_dayfile
781	#PBS -j oe
782	#PBS -q $queue
783
784	$module_calls
785
786	%%END%%
787
788	else
789
790	continue
791
792	fi
793
794	elif [[ $remote_host = lccrayf ]]
795	then
796
797	if [[ $numprocs != 0 ]]
798	then
799	cat > $job_to_send << %%END%%
800	#!/bin/bash -l
801	#SBATCH -J $job_name
802	#SBATCH -t $timestring
803	#SBATCH -N $nodes
804	#SBATCH --ntasks-per-node=$processes_per_node
805	#SBATCH -p $queue
806	#SBATCH -o $remote_dayfile
807	#SBATCH -e $remote_dayfile
808
809	$init_cmds
810	$module_calls
811
812	%%END%%
813
814	else
815	cat > $job_to_send << %%END%%
816	#!/bin/bash -l
817	#SBATCH -J $job_name
818	#SBATCH -t $timestring
819	#SBATCH -l ncpus=1
820	#SBATCH -l pmem=${memory}mb
821	#SBATCH -m abe
822	#SBATCH -o $remote_dayfile
823	#SBATCH -e $remote_dayfile
824
825	$init_cmds
826	$module_calls
827
828	%%END%%
829
830	fi
831
832	elif [[ $remote_host = lcflow ]]
833	then
834	if [ $memory -gt 1800 ]; then
835	use_himem=""
836	else
837	use_himem="#"
838	fi
839	if [[ $numprocs != 0 ]]
840	then
841	pe_set="#$ -pe impi41 $numprocs"
842	else
843	pe_set="#$ -pe impi41 1"
844	fi
845	if [[ $queue = default ]]
846	then
847	queue_set=""
848	else
849	queue_set="#$ -q $queue"
850	fi
851	[[ "$disc_space" = "" ]] && disc_space=50
852
853	cat > $job_to_send << %%END%%
854	#!/bin/bash
855	#$ -S /bin/bash
856	#$ -N $job_name
857	#$ -cwd
858	#$ -l h_rt=$timestring
859	#$ -l h_vmem=${memory}M
860	#$ -o $remote_dayfile
861	#$ -j y
862	$pe_set
863	#$ -R y
864	${use_himem}#$ -l highmem=true
865	#$ -l h_fsize=${disc_space}G
866	$queue_set
867
868	%%END%%
869
870	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
871	then
872
873	if [[ $numprocs != 0 ]]
874	then
875	cat > $job_to_send << %%END%%
876	#!/bin/ksh
877	#PBS -N $job_name
878	#PBS -l walltime=$timestring
879	#PBS -l ncpus=$numprocs
880	#PBS -l pmem=${memory}mb
881	#PBS -o $remote_dayfile
882	#PBS -l nodes=$nodes:ppn=${processes_per_node}
883	#PBS -j oe
884
885	mpd &
886
887	%%END%%
888
889	else
890	cat > $job_to_send << %%END%%
891	#!/bin/ksh
892	#PBS -N $job_name
893	#PBS -l walltime=$timestring
894	#PBS -l ncpus=1
895	#PBS -l pmem=${memory}mb
896	#PBS -o $remote_dayfile
897	#PBS -j oe
898
899	%%END%%
900
901	fi
902
903	elif [[ $remote_host = lckiaps ]]
904	then
905
906	if [[ $numprocs != 0 ]]
907	then
908	cat > $job_to_send << %%END%%
909	#!/bin/ksh
910	#PBS -N $job_name
911	#PBS -l walltime=$timestring
912	#PBS -l select=1:ncpus=$numprocs
913	#PBS -l pmem=${memory}mb
914	#PBS -q $queue
915	#PBS -o $remote_dayfile
916	#PBS -j oe
917	#PBS -V
918
919	%%END%%
920
921	else
922	cat > $job_to_send << %%END%%
923	#!/bin/ksh
924	#PBS -N $job_name
925	#PBS -l walltime=$timestring
926	#PBS -l ncpus=1
927	#PBS -l pmem=${memory}mb
928	#PBS -o $remote_dayfile
929	#PBS -j oe
930
931	%%END%%
932
933	fi
934
935	elif [[ $remote_host = lcyon ]]
936	then
937
938	if [[ $numprocs != 0 ]]
939	then
940	cat > $job_to_send << %%END%%
941	#!/bin/ksh
942	#PBS -N $job_name
943	#PBS -l walltime=$timestring
944	#PBS -l ncpus=$numprocs
945	#PBS -l pmem=${memory}mb
946	#PBS -o $remote_dayfile
947	#PBS -j oe
948
949	%%END%%
950
951	else
952	cat > $job_to_send << %%END%%
953	#!/bin/ksh
954	#PBS -N $job_name
955	#PBS -l walltime=$timestring
956	#PBS -l ncpus=1
957	#PBS -l pmem=${memory}mb
958	#PBS -o $remote_dayfile
959	#PBS -j oe
960
961	%%END%%
962
963	fi
964
965	elif [[ $remote_host = lcxe6 ]]
966	then
967
968	if [[ $numprocs != 0 ]]
969	then
970	cat > $job_to_send << %%END%%
971	#!/bin/ksh
972	#PBS -S /bin/ksh
973	#PBS -N $job_name
974	#PBS -A $project_account
975	#PBS -j oe
976	#PBS -l walltime=$timestring
977	#PBS -l mppwidth=${numprocs}
978	#PBS -l mppnppn=${processes_per_node}
979	#PBS -m abe
980	#PBS -o $remote_dayfile
981	$email_directive
982
983	$init_cmds
984	$module_calls
985
986	%%END%%
987
988	else
989	cat > $job_to_send << %%END%%
990	#!/bin/ksh
991	#PBS -S /bin/ksh
992	#PBS -N $job_name
993	#PBS -A $project_account
994	#PBS -j oe
995	#PBS -l walltime=$timestring
996	#PBS -l ncpus=1
997	#PBS -l pmem=${memory}mb
998	#PBS -m abe
999	$email_directive
1000	#PBS -o $remote_dayfile
1001
1002	$init_cmds
1003	$module_calls
1004
1005	%%END%%
1006
1007	fi
1008
1009	elif [[ $remote_host = lckyoto ]]
1010	then
1011
1012	cat > $job_to_send << %%END%%
1013	#!/bin/ksh
1014	# @\$-o $remote_dayfile
1015	# @\$-eo -oi
1016	# @\$-lP 16
1017	# @\$-lp 1
1018	# @\$-lm 28gb -llm unlimited -ls unlimited
1019	# @\$-q $queue
1020	# @\$-Pvn abs_pack
1021	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
1022	#. /thin/local/etc/setprofile/intel-11.0.sh
1023	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
1024	. ~/.myprofile
1025	#. /home2/t/t51254/palm/current_version/myprofile
1026	#. /thin/apps/pgi/mpi.sh
1027	#
1028	env
1029	#
1030	set -x
1031
1032	%%END%%
1033
1034	elif [[ $remote_host = lcxt5m ]]
1035	then
1036
1037	if [[ $numprocs != 0 ]]
1038	then
1039	cat > $job_to_send << %%END%%
1040	#!/bin/ksh
1041	#PBS -S /bin/ksh
1042	#PBS -N $job_name
1043	#PBS -j oe
1044	#PBS -l walltime=$timestring
1045	#PBS -l mppwidth=${numprocs}
1046	#PBS -l mppnppn=${processes_per_node}
1047	#PBS -m abe
1048	#PBS -o $remote_dayfile
1049
1050	$init_cmds
1051	$module_calls
1052
1053	%%END%%
1054
1055	else
1056	cat > $job_to_send << %%END%%
1057	#!/bin/ksh
1058	#PBS -S /bin/ksh
1059	#PBS -N $job_name
1060	#PBS -j oe
1061	#PBS -l walltime=$timestring
1062	#PBS -l ncpus=1
1063	#PBS -l pmem=${memory}mb
1064	#PBS -m abe
1065	#PBS -o $remote_dayfile
1066
1067	$init_cmds
1068	$module_calls
1069
1070	%%END%%
1071
1072	fi
1073
1074	elif [[ $remote_host = lckyuh ]]
1075	then
1076	cat > $job_to_send << %%END%%
1077	#!/bin/bash
1078	#PJM -L "rscgrp=$queue"
1079	#PJM -L "node=$nodes"
1080	#PJM --mpi "proc=$numprocs"
1081	#PJM -L "elapse=$timestring"
1082	#PJM -o $remote_dayfile
1083	#PJM -j
1084	#PJM -X
1085	#PJM --no-stging
1086
1087	export LANG=en_US.UTF-8
1088	%%END%%
1089
1090	elif [[ $remote_host = lckyut ]]
1091	then
1092	cat > $job_to_send << %%END%%
1093	#!/bin/bash
1094	#PJM -L "rscgrp=$queue"
1095	#PJM -L "vnode=$numprocs"
1096	#PJM -L "vnode-core=1"
1097	#PJM -L "elapse=$timestring"
1098	#PJM --mpi proc=$numprocs
1099	#PJM -o $remote_dayfile
1100	#PJM -j
1101	#PJM -X
1102	#PJM --no-stging
1103
1104	export LANG=en_US.UTF-8
1105	%%END%%
1106
1107	elif [[ $remote_host = nech ]]
1108	then
1109
1110	if (( nodes > 1 ))
1111	then
1112	cat > $job_to_send << %%END%%
1113	#!/bin/ksh
1114	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1115	#PBS -l ${qsubmem}=${Memory}gb
1116	#PBS -b $nodes
1117	#PBS -o $remote_dayfile
1118	#PBS -N palm
1119	#PBS -j o
1120	#PBS -T mpisx
1121
1122	%%END%%
1123
1124	elif [[ $numprocs != 0 ]]
1125	then
1126	cat > $job_to_send << %%END%%
1127	#!/bin/ksh
1128	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1129	#PBS -l ${qsubmem}=${Memory}gb
1130	#PBS -o $remote_dayfile
1131	#PBS -N palm
1132	#PBS -j o
1133
1134	%%END%%
1135
1136	else
1137	cat > $job_to_send << %%END%%
1138	#!/bin/ksh
1139	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1140	#PBS -o $remote_dayfile
1141	#PBS -j o
1142
1143	%%END%%
1144
1145	fi
1146
1147	elif [[ $remote_host = lctit ]]
1148	then
1149	cat > $job_to_send << %%END%%
1150	#!/bin/ksh
1151	$init_cmds
1152	$module_calls
1153
1154	%%END%%
1155
1156	# SET OPTIONS FOR SUBMIT-COMMAND
1157	if [[ $tasks_per_node != $processes_per_node ]]
1158	then
1159	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -et 1 -q $queue "
1160	else
1161	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -et 1 -q $queue "
1162	fi
1163
1164	else
1165
1166	cat > $job_to_send << %%END%%
1167	# @\$-q ${queue}
1168	# @\$-l${qsubtime} $timestring
1169	# @\$-l${qsubmem} ${memory}mb
1170	# @\$-o $remote_dayfile
1171	# @\$-eo
1172
1173	%%END%%
1174
1175	fi
1176
1177
1178	# IN CASE OF JOBS EXECUTING ON REMOTE-HOSTS, THE TRANSFER OF THE DAYFILES
1179	# TO THE LOCAL HOSTS WILL BE INITIATED BY TRAP ON EXIT
1180	# NO TRANSFER POSSIBLE ON IBM IN SEOUL
1181	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1182	then
1183	echo "set +vx" >> $job_to_send
1184	echo "trap '" >> $job_to_send
1185	echo "set +vx" >> $job_to_send
1186	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $remote_host = lccrayb \|\| $remote_host = lccrayh \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lcflow \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* \|\| $remote_host = lcxe6 ]]
1187	then
1188	if [[ $remote_host = ibmh ]]
1189	then
1190	return_queue=c1
1191	elif [[ $remote_host = ibmkisti ]]
1192	then
1193	return_queue=class.1-2
1194	elif [[ $remote_host = ibmku ]]
1195	then
1196	return_queue=sdbg2
1197	elif [[ $remote_host = ibms ]]
1198	then
1199	return_queue=p_normal
1200	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1201	then
1202	return_queue=dataq
1203	elif [[ $remote_host = lcxe6 ]]
1204	then
1205	return_queue=debug
1206	elif [[ $remote_host = lckiaps ]]
1207	then
1208	return_queue=express
1209	elif [[ $remote_host = lckyuh ]]
1210	then
1211	return_queue=cx-single
1212	elif [[ $remote_host = lckyut ]]
1213	then
1214	return_queue=cx-single
1215	else
1216	return_queue=unknown
1217	fi
1218
1219	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1220	then
1221
1222	if [[ $remote_host = ibmku ]]
1223	then
1224	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1225	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1226	else
1227	echo "echo \"#!/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1228	fi
1229	echo "echo \"# @ job_type = serial\" >> scpjob.$identifier" >> $job_to_send
1230	echo "echo \"# @ job_name = transfer\" >> scpjob.$identifier" >> $job_to_send
1231	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$identifier" >> $job_to_send
1232	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$identifier " >> $job_to_send
1233	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1234	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1235	if [[ $host != "ibmh" ]]
1236	then
1237	echo "echo \"# @ class = $return_queue\" >> scpjob.$identifier" >> $job_to_send
1238	fi
1239	echo "echo \"# @ image_size = 10\" >> scpjob.$identifier" >> $job_to_send
1240	echo "echo \"# @ notification = never\" >> scpjob.$identifier" >> $job_to_send
1241
1242	echo "echo \"# @ queue\" >> scpjob.$identifier" >> $job_to_send
1243	echo "echo \" \" >> scpjob.$identifier" >> $job_to_send
1244
1245	echo "echo \"set -x\" >> scpjob.$identifier" >> $job_to_send
1246	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$identifier" >> $job_to_send
1247	if [[ $remote_host = ibmku ]]
1248	then
1249	echo "echo \"rm scpjob.$identifier\" >> scpjob.$identifier" >> $job_to_send
1250	fi
1251	echo "echo \"exit\" >> scpjob.$identifier" >> $job_to_send
1252
1253	elif [[ $remote_host = nech ]]
1254	then
1255	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1256	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1257	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1258	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1259	echo "#PBS -j o" >> $job_to_send
1260	echo " " >> $job_to_send
1261	echo "set -x" >> $job_to_send
1262	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1263	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1264	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1265	echo "%%END%%" >> $job_to_send
1266
1267	elif [[ $remote_host = lckyuh ]]
1268	then
1269	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1270	echo "#!/bin/bash" >> $job_to_send
1271	echo "#PJM -L \"node=1\"" >> $job_to_send
1272	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1273	echo "#PJM --no-stging" >> $job_to_send
1274	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1275	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1276	echo "#PJM -j" >> $job_to_send
1277	echo " " >> $job_to_send
1278	echo "export LANG=en_US.UTF-8" >> $job_to_send
1279	echo "set -x" >> $job_to_send
1280	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1281	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1282	echo "%%END%%" >> $job_to_send
1283
1284	elif [[ $remote_host = lckyut ]]
1285	then
1286	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1287	echo "#!/bin/bash" >> $job_to_send
1288	echo "#PJM -L \"vnode=1\"" >> $job_to_send
1289	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1290	echo "#PJM --no-stging" >> $job_to_send
1291	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1292	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1293	echo "#PJM -j" >> $job_to_send
1294	echo " " >> $job_to_send
1295	echo "export LANG=en_US.UTF-8" >> $job_to_send
1296	echo "set -x" >> $job_to_send
1297	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1298	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1299	echo "%%END%%" >> $job_to_send
1300
1301	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1302	then
1303	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1304	echo "#!/bin/bash" >> $job_to_send
1305	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1306	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1307	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1308	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1309	echo "#PBS -j oe" >> $job_to_send
1310	echo " " >> $job_to_send
1311	echo "set -x" >> $job_to_send
1312	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1313	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1314	echo "%%END%%" >> $job_to_send
1315
1316	elif [[ $remote_host = lcflow ]]
1317	then
1318	echo "cat > scpjob.${identifier}.tmp << %%END%%" >> $job_to_send
1319	echo "#!/bin/bash" >> $job_to_send
1320	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
1321	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
1322	echo "SGEPREFIX -cwd" >> $job_to_send
1323	echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
1324	echo "SGEPREFIX -l h_vmem=500M" >> $job_to_send
1325	echo "SGEPREFIX -l excl_flow=false" >> $job_to_send
1326	echo "SGEPREFIX -j y" >> $job_to_send
1327	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$identifier" >> $job_to_send
1328	echo " " >> $job_to_send
1329	echo "set -x" >> $job_to_send
1330	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
1331	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
1332	echo "" >> $job_to_send
1333	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1334	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1335	echo "rm -f scpjob.${identifier}" >> $job_to_send
1336	echo "%%END%%" >> $job_to_send
1337	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${identifier}.tmp > scpjob.${identifier}" >> $job_to_send
1338	echo "rm -f scpjob.${identifier}.tmp" >> $job_to_send
1339	elif [[ $remote_host = lcxe6 ]]
1340	then
1341	echo "cat > scpjob.${identifier} << %%END%%" >> $job_to_send
1342	echo "#!/bin/ksh" >> $job_to_send
1343	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1344	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1345	echo "#PBS -A $project_account" >> $job_to_send
1346	echo "#PBS -l mppwidth=1" >> $job_to_send
1347	echo "#PBS -l mppnppn=1" >> $job_to_send
1348	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1349	echo "#PBS -j oe" >> $job_to_send
1350	echo " " >> $job_to_send
1351	echo "set -x" >> $job_to_send
1352	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1353	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1354	echo "%%END%%" >> $job_to_send
1355	else
1356
1357	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1358	echo "# @\\\$-q $return_queue" >> $job_to_send
1359	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1360	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1361	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1362	then
1363	echo "# @\$-l mpp_p=0" >> $job_to_send
1364	fi
1365	echo '# @\$-lF 10mb' >> $job_to_send
1366	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1367	echo '# @\\\$-eo' >> $job_to_send
1368	echo " " >> $job_to_send
1369	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1370	then
1371	echo "set +vx" >> $job_to_send
1372	echo ". .profile" >> $job_to_send
1373	fi
1374	echo "set -x" >> $job_to_send
1375	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1376	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1377	echo "%%END%%" >> $job_to_send
1378	fi
1379
1380	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1381	then
1382	echo "llsubmit scpjob.$identifier" >> $job_to_send
1383	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1384	then
1385	echo "msub -q $return_queue scpjob.$identifier" >> $job_to_send
1386	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1387	then
1388	echo "qsub -J n scpjob.$identifier" >> $job_to_send
1389	elif [[ $remote_host = t3es ]]
1390	then
1391	echo "qsub -J n -s /bin/ksh scpjob.$identifier" >> $job_to_send
1392	elif [[ $remote_host = lckiaps ]]
1393	then
1394	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1395	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"$submcom ${job_catalog}/scpjob.$identifier\" " >> $job_to_send
1396	echo "rm ${job_catalog}/scpjob.$identifier" >> $job_to_send
1397	elif [[ $remote_host = lckyu* ]]
1398	then
1399	echo "scp $PORTOPT scpjob.$identifier ${remote_username}@${remote_address}:job_queue" >> $job_to_send
1400	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"cd job_queue; $submcom scpjob.$identifier; rm scpjob.$identifier\" " >> $job_to_send
1401	elif [[ $remote_host = lcflow ]]
1402	then
1403	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1404	echo "/usr/bin/ssh ${remote_username}@${remote_address} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$identifier\" " >> $job_to_send
1405	else
1406	echo "$submcom scpjob.$identifier" >> $job_to_send
1407	fi
1408	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
1409	then
1410	echo "rm scpjob.$identifier" >> $job_to_send
1411	fi
1412	if [[ $remote_host = nech ]]
1413	then
1414	echo "cd -" >> $job_to_send
1415	fi
1416	else
1417	# echo "ftpcopy -d $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1418	# ??? funktioniert das ÃŒberhaupt noch ???
1419	echo "nohup ftpcopy -d -w 15 $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1420	fi
1421	echo "set -x" >> $job_to_send
1422	echo " ' exit" >> $job_to_send
1423	echo "set -x" >> $job_to_send
1424	fi
1425
1426
1427
1428	# APPEND THE JOB-FILE (CREATE BY mrun) TO THE JOB-DIRECTIVES GENERATED ABOVE
1429	cat $file_to_send >> $job_to_send
1430
1431	if [[ $remote_host = ibm ]]
1432	then
1433	echo " " >> $job_to_send
1434	echo "exit" >> $job_to_send
1435	fi
1436
1437	# REMOVE JOB-FILE
1438	if [[ $remote_host = lctit \|\| $remote_host = ibmku \|\| $remote_host = lcflow ]]
1439	then
1440	echo " " >> $job_to_send
1441	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1442	fi
1443
1444
1445	# TRANSFER JOB TO THE TARGET HOST (JOB-DIRECTORY)
1446	if [[ $no_submit = false ]]
1447	then
1448	if [[ $remote_host != $local_host ]]
1449	then
1450	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1451	if [[ $remote_host = ibms ]] # ssh on ibms cannot handle "~/"
1452	then
1453	job_catalog_save=$job_catalog
1454	job_catalog=job_queue
1455	elif [[ $remote_host = nech ]]
1456	then
1457	job_catalog_save=$job_catalog
1458	job_catalog=/hpf/b/${remote_user}/job_queue
1459	fi
1460	if [[ $remote_host = nech ]]
1461	then
1462	# FILES CAN ONLY BE TRANSFERED VIA DKRZ'S ARCHIVE-SERVER
1463	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1464	else
1465	scp $PORTOPT $job_to_send ${remote_user}@${remote_address}:${job_catalog}/$job_on_remhost
1466	fi
1467	if [[ $? = 1 ]]
1468	then
1469	locat=scp; exit
1470	fi
1471	if [[ $remote_host = ibms ]]
1472	then
1473	job_catalog=$job_catalog_save
1474	fi
1475	[[ $verify = true ]] && printf "\n >>> finished\n"
1476	else
1477	eval job_catalog=$job_catalog
1478	cp $job_to_send ${job_catalog}/$job_on_remhost
1479	fi
1480
1481
1482
1483	# START NQS- / LOADLEVELER-JOB
1484	if [[ $remote_host != $local_host ]]
1485	then
1486	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1487
1488	if [[ $remote_host = ibmku ]]
1489	then
1490	ssh $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1491	elif [[ $remote_host = lcflow ]]
1492	then
1493	/usr/bin/ssh $SSH_PORTOPT $remote_address -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
1494	else
1495	ssh $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1496	fi
1497
1498	[[ $verify = true ]] && printf " >>> o.k.\n"
1499	else
1500	cd $job_catalog
1501	if [[ $(echo $local_host \| cut -c1-3) = ibm \|\| $(echo $local_host \| cut -c1-6) = lccray ]]
1502	then
1503	eval $submcom $job_on_remhost
1504	elif [[ $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyu* ]]
1505	then
1506	chmod u+x $job_on_remhost
1507	eval $submcom $job_on_remhost
1508	elif [[ $local_host = nech ]]
1509	then
1510	if [[ $queue = default ]]
1511	then
1512	eval $submcom $job_on_remhost
1513	else
1514	eval $submcom -q $queue $job_on_remhost
1515	fi
1516	else
1517	qsub $job_on_remhost
1518	fi
1519
1520	# JOBFILE MUST NOT BE DELETED ON lctit/ibmku/lcflow. THIS WILL BE DONE
1521	# AT THE END OF THE JOB
1522	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
1523	then
1524	rm $job_on_remhost
1525	fi
1526	cd - > /dev/null
1527	fi
1528	fi
1529
1530
1531
1532	# FINAL ACTIONS
1533	if [[ $no_submit = false ]]
1534	then
1535	rm -f $job_to_send
1536	fi
1537	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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