Home

Context Navigation

source: palm/trunk/SCRIPTS/subjob @ 1480

Last change on this file since 1480 was 1480, checked in by raasch, 10 years ago
adjustments for 2nd stage of HLRNIII
Property svn:keywords set to `Id Rev`
File size: 52.3 KB

Line
1	#!/bin/ksh
2
3	# subjob - script for automatic generation and submission of batch-job files
4	# for various batch queuing systems
5
6	#--------------------------------------------------------------------------------#
7	# This file is part of PALM.
8	#
9	# PALM is free software: you can redistribute it and/or modify it under the terms
10	# of the GNU General Public License as published by the Free Software Foundation,
11	# either version 3 of the License, or (at your option) any later version.
12	#
13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
16	#
17	# You should have received a copy of the GNU General Public License along with
18	# PALM. If not, see <http://www.gnu.org/licenses/>.
19	#
20	# Copyright 1997-2014 Leibniz Universitaet Hannover
21	#--------------------------------------------------------------------------------#
22	#
23	# Current revisions:
24	# ------------------
25	# adjustments for 2nd stage of HLRNIII
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: subjob 1480 2014-10-17 14:41:49Z raasch $
30	#
31	# 1468 2014-09-24 14:06:57Z maronga
32	# Typo removed (addres->address)
33	# Adjustments for lcxe6
34	#
35	# 1452 2014-08-22 09:41:06Z heinze
36	# local hosts for blizzard added
37	#
38	# 1450 2014-08-21 07:31:51Z heinze
39	# HLRN-III (lccrayb): testq queue adjusted to mpp1testq
40	#
41	# 1442 2014-07-28 07:09:10Z raasch
42	# HLRN-III (lccrayb/lccrayh) queues adjusted
43	#
44	# 1378 2014-04-28 06:04:58Z raasch
45	# -et option added for lctit
46	#
47	# 1350 2014-04-04 13:01:30Z maronga
48	# location of qsub updated for lcxe6
49	#
50	# 1289 2014-03-04 07:12:34Z raasch
51	# German comments translated to English
52	# fimm-, necriam-, scirocco-, ibmy-, and sgi-specific code removed
53	#
54	# 1279 2014-01-28 12:10:14Z raasch
55	# node calculation modified due to changes in mrun (tasks_per_node must not be
56	# an integral divisor of numprocs any more)
57	#
58	# 1274 2014-01-09 13:14:54Z heinze
59	# adjustments for lccrayh
60	#
61	# 1266 2013-12-11 12:07:34Z heinze
62	# further adjustments for lccrayb (use msub instead of qsub)
63	#
64	# 1264 2013-12-09 12:46:09Z fricke
65	# Bugfix: Using number of nodes instead of number of processors (lccrayb)
66	#
67	# 1262 2013-12-09 10:57:20Z fricke
68	# further adjustments for lccrayb
69	#
70	# 1260 2013-12-04 12:48:04Z raasch
71	# jaboticaba admitted
72	#
73	# 1255 2013-11-07 14:43:35Z raasch
74	# further adjustments for lccrayb
75	#
76	# 1224 2013-09-16 07:27:23Z raasch
77	# first adjustments for lccrayb
78	#
79	# 1202 2013-07-10 16:22:07Z witha
80	# adjustments for Forwind cluster (lcflow)
81	#
82	# 1199 2013-07-05 14:52:22Z raasch
83	# adjustments for CSC Helsinki (lccrayf)
84	#
85	# use of cluster/express queue enabled (ibmh)
86	# vinessa added (imuk)
87	#
88	# 1103 2013-02-20 02:15:53Z raasch
89	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
90	# instead typeset -L/R),
91	# further adjustments for lckyuh
92	#
93	# 2013-02-10 01:47:43Z raasch
94	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
95	# and for Forwind cluster (lcflow)
96	#
97	# 1094 2013-02-03 01:52:12Z raasch
98	# new option -P for explicit setting of ssh/scp port,
99	# decalpha parts (yonsei) removed
100	#
101	# 2013-02-02 07:06:13Z raasch
102	# adjustments for Kyushu-University computing center (lckyut - tatara)
103	# old changelog messages removed
104	#
105	# 1046 2012-11-09 14:38:45Z maronga
106	# code put under GPL (PALM 3.9)
107	#
108	# 08/07/94 - Siggi - first version finished
109	# 29/06/94 - Siggi - script development started
110	#--------------------------------------------------------------------------------#
111	# subjob - script for automatic generation and submission of batch-job files
112	# for various batch queuing systems
113	#--------------------------------------------------------------------------------#
114
115
116	# VARIABLE-DECLARATIONS AND DEFAULT VALUES
117	delete_dayfile=false
118	email_notification=none
119	group_number=none
120	locat=normal
121	no_default_queue=none
122	no_submit=false
123	job_catalog="~/job_queue"
124	job_name=none
125	local_user=$LOGNAME
126	node_usage=shared
127	numprocs=0
128	punkte="..........................................................."
129	submcom=qsub
130	queue=default
131	remote_host=none
132	remote_user=""
133	verify=true
134
135	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
136	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
137
138
139
140	# ERROR HANDLING
141	# IN CASE OF EXIT:
142	trap 'if [[ $locat != normal ]]
143	then
144	case $locat in
145	(option) printf "\n --> available optios can be displayed"
146	printf " by typing:"
147	printf "\n \"subjob ?\" \n";;
148	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
149	(*) printf "\n +++ unknown error"
150	printf "\n please inform S. Raasch!\n"
151	esac
152	[[ -f $job_to_send ]] && rm $job_to_send
153	printf "\n\n+++ SUBJOB killed \n\n"
154	fi' exit
155
156
157	# IN CASE OF TERMINAL-BREAK:
158	trap '[[ -f $job_to_send ]] && rm $job_to_send
159	printf "\n\n+++ SUBJOB killed \n\n"
160	exit
161	' 2
162
163
164
165
166	# DETERMINE NAME OF LOCAL HOST
167	local_host=$(hostname)
168
169
170
171	# SET HOST-SPECIFIC VARIABLES VEREINBAREN (CHECK, IF LOCAL HOST
172	# IS ADMITTED AT ALL)
173	# NOTE: ONE OF THE ENTRIES FOR "lck" OR "lckordi" ALWAYS HAS TO BE
174	# COMMENT OUT, BECAUSE THE HOSTNAME (node*) IS SAME FOR BOTH MACHINES
175	case $local_host in
176	(ambiel-lx) local_address=134.106.74.48; local_host=lcfor;;
177	(atmos) local_address=172.20.25.35; local_host=lcide;;
178	(austru) local_address=130.75.105.128; local_host=lcmuk;;
179	(autan) local_address=130.75.105.57; local_host=lcmuk;;
180	(bora) local_address=130.75.105.103; local_host=lcmuk;;
181	(b04*) local_address=133.5.4.33; local_host=lckyuh;;
182	(blizzard1\|p*) local_address=136.172.40.15; local_host=ibmh;;
183	(blizzard2\|p*) local_address=136.172.40.16; local_host=ibmh;;
184	(blogin\|bxc) local_address=130.73.233.1; local_host=lccrayb;;
185	(hlogin\|hxc) local_address=130.75.4.1; local_host=lccrayh;;
186	(breva) local_address=130.75.105.98; local_host=lcmuk;;
187	(buran) local_address=130.75.105.58; local_host=lcmuk;;
188	(caurus) local_address=130.75.105.19; local_host=lcmuk;;
189	(climate*) local_address=165.132.26.68; local_host=lcyon;;
190	(clogin*) local_address=86.50.166.21; local_host=lccrayf;;
191	(cs*) local_address=136.172.44.131; local_host=nech;;
192	(elephanta) local_address=130.75.105.6; local_host=lcmuk;;
193	(flow01) local_address=10.141.255.71; local_host=lcflow;;
194	(flow02) local_address=10.141.255.72; local_host=lcflow;;
195	(node*) local_address=165.132.26.61 local_host=lck;;
196	# (node*) local_address=210.219.61.8 local_host=lckordi;;
197	(gaia*) local_address=150.183.146.24; local_host=ibmkisti;;
198	(gallego) local_address=130.75.105.10; local_host=lcmuk;;
199	(gregale) local_address=130.75.105.109; local_host=lcmuk;;
200	(hababai) local_address=130.75.105.108; local_host=lcmuk;;
201	(hayaka*) local_address=133.5.4.33; local_host=lckyuh;;
202	(hexagon.bccs.uib.no) local_address=129.177.20.113; local_host=lcxe6;;
203	(hx*) local_address=133.3.51.11; local_host=lckyoto;;
204	(inferno) local_address=130.75.105.5; local_host=lcmuk;;
205	(irifi) local_address=130.75.105.104; local_host=lcmuk;;
206	(jaboticaba) local_address=150.163.25.181; local_host=lcbr;;
207	(sno) local_address=130.75.105.113; local_host=lcmuk;;
208	(levanto) local_address=130.75.105.45; local_host=lcmuk;;
209	(login*) local_address=118.128.66.223; local_host=lckiaps;;
210	(maestro) local_address=130.75.105.2; local_host=lcmuk;;
211	(meller) local_address=134.106.74.155; local_host=lcfor;;
212	(meteo-login*) local_address=193.166.211.144;local_host=lcxt5m;;
213	(hexagon*) local_address=129.177.20.113; local_host=lcxe6;;
214	(nobel*) local_address=150.183.5.101; local_host=ibms;;
215	(orkan) local_address=130.75.105.3; local_host=lcmuk;;
216	(ostria) local_address=130.75.105.106; local_host=lcmuk;;
217	(paesano) local_address=130.75.105.46; local_host=lcmuk;;
218	(pcj*) local_address=172.31.120.1; local_host=lckyut;;
219	(pingui) local_address=134.106.74.118; local_host=lcfor;;
220	(quanero) local_address=130.75.105.107; local_host=lcmuk;;
221	(rte*) local_address=133.5.185.60; local_host=lcrte;;
222	(shiokaze-lx) local_address=134.106.74.123; local_host=lcfor;;
223	(sisu-login*) local_address=86.50.166.21; local_host=lccrayf;;
224	(solano) local_address=130.75.105.110; local_host=lcmuk;;
225	(sugoka*) local_address=172.31.120.1; local_host=lckyut;;
226	(t2a*) local_address=10.1.6.165; local_host=lctit;;
227	(urban*) local_address=147.46.30.151 local_host=lcsb;;
228	(vinessa) local_address=130.75.105.112; local_host=lcmuk;;
229	(vorias) local_address=172.20.25.43; local_host=lcmuk;;
230	(*.cc.kyushu-u.ac.jp) local_address=133.5.4.129; local_host=ibmku;;
231	(*) printf "\n +++ \"$local_host\" unknown";
232	printf "\n please contact the PALM group at IMUK";
233	locat=parameter; exit;;
234	esac
235
236
237
238	# BY DEFAULT, THE REMOTE HOST IS THE LOCAL HOST
239	remote_host=$local_host
240
241
242
243
244	# READ THE SHELLSCRIPT-OPTIONS
245	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
246	do
247	case $option in
248	(c) job_catalog=$OPTARG;;
249	(d) delete_dayfile=true;;
250	(D) no_submit=true;;
251	(e) email_notification=$OPTARG;;
252	(g) group_number=$OPTARG;;
253	(h) remote_host=$OPTARG;;
254	(m) memory=$OPTARG;;
255	(n) job_name=$OPTARG;;
256	(N) node_usage=$OPTARG;;
257	(O) threads_per_task=$OPTARG;;
258	(P) scp_port=$OPTARG;;
259	(q) no_default_queue=$OPTARG;;
260	(t) cputime=$OPTARG;;
261	(T) tasks_per_node=$OPTARG;;
262	(u) remote_user=$OPTARG;;
263	(v) verify=false;;
264	(X) numprocs=$OPTARG;;
265	(\?) printf "\n +++ Option $OPTARG unknown \n";
266	locat=option; exit;;
267	esac
268	done
269
270
271	# GET THE NAME OF THE JOBFILE AS NEXT ARGUMENT
272	(( to_shift = $OPTIND - 1 ))
273	shift $to_shift; file_to_send=$1
274
275
276	# OUTPUT OF SHORT DESCRIPTION OF SCRIPT-OPTIONS
277	if [ "$1" = "?" ]
278	then
279	(printf "\n *** subjob can be called as follows:\n"
280	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
281	printf "\n Description of available options:\n"
282	printf "\n Option Description Default-Value"
283	printf "\n -c job-input- and output-catalog ~/job_queue"
284	printf "\n -d no job-protocol will be created ---"
285	printf "\n -D only the job-file will be created ---"
286	printf "\n -h execution host, available hosts: $remote_host"
287	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, lc...,"
288	printf "\n lckiaps, lctit, nech"
289	printf "\n -m memory demand per process in MByte ---"
290	printf "\n -n jobname <jobdatei>"
291	printf "\n -O threads per task (for OpenMP usage) 1"
292	printf "\n -P ssh/scp port default port"
293	printf "\n -q job-queue to be used default"
294	printf "\n -t allowed cpu-time in seconds ---"
295	printf "\n -T tasks per node (on parallel hosts) ---"
296	printf "\n -u username on execution host from .netrc"
297	printf "\n -v no prompt for confirmation ---"
298	printf "\n -X # of processors (on parallel hosts) 1"
299	printf "\n "
300	printf "\n The only possible positional parameter is <jobfile>:"
301	printf "\n The complete NQS-job must be provided here."
302	printf "\n <jobfile>=? creates this outline\n\n") \| more
303	exit
304	fi
305
306
307
308	# CHECK, IF JOB-FILE HAS BEEN GIVEN AS ARGUMENT AND IF THE FILE ITSELF EXISTS
309	if [[ "$file_to_send" = "" ]]
310	then
311	printf "\n +++ job-file missing"
312	locat=parameter; exit
313	else
314	if [[ -f $file_to_send ]]
315	then
316	true
317	else
318	printf "\n +++ job-file: "
319	printf "\n $file_to_send"
320	printf "\n does not exist"
321	locat=parameter; exit
322	fi
323	fi
324
325
326
327	# IF NO JOBNAME HAS BEEN GIVEN, JOBNAME IS SET TO THE NAME OF THE JOB-FILE,
328	# PROVIDED THAT THE JOB-FILE NAME DOES NOT CONTAIN ANY PATH
329	if [[ $job_name = none ]]
330	then
331	job_name=$file_to_send
332	fi
333	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
334	then
335	printf "\n +++ job-file name: "
336	printf "\n $job_name"
337	printf "\n must not contain \"/\"-characters"
338	locat=parameter; exit
339	fi
340
341
342
343
344	# SET HOST-SPECIFIC QUANTITIES, OR TERMINATE IN CASE OF UNKNOWN HOST,
345	# OR IF NO HOST HAS BEEN GIVEN
346	if [[ $remote_host = none ]]
347	then
348	printf "\n +++ host missing"
349	locat=option; exit
350	else
351	case $remote_host in
352	(ibm) queue=p690_standard; remote_address=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
353	(ibmh) queue=cluster; remote_address=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
354	(ibmkisti) queue=class.32plus; remote_address=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
355	(ibmku) queue=s4; remote_address=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
356	(ibms) queue=p_normal; remote_address=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
357	(lccrayb) queue=mpp1testq; remote_address=130.73.233.1; submcom=/opt/moab/default/bin/msub;;
358	(lccrayh) queue=mpp1testq; remote_address=130.75.4.1; submcom=/opt/moab/default/bin/msub;;
359	(lccrayf) queue=small; remote_address=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
360	(lcflow) remote_address=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;;
361	(lckyoto) remote_address=133.3.51.11; submcom=/thin/local/bin/qsub;;
362	(lck) remote_address=165.132.26.61; submcom=/usr/torque/bin/qsub;;
363	(lckiaps) remote_address=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
364	(lckordi) remote_address=210.219.61.8; submcom=/usr/torque/bin/qsub;;
365	(lckyuh) remote_address=133.5.4.33; submcom=/usr/bin/pjsub;;
366	(lckyut) remote_address=133.5.4.37; submcom=/usr/bin/pjsub;;
367	(lcsb) remote_address=147.46.30.151; submcom=/usr/torque/bin/qsub;;
368	(lctit) queue=S; remote_address=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
369	(lcxe6) remote_address=129.177.20.113; submcom=/opt/torque/default/bin/qsub;;
370	(lcxt5m) remote_address=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
371	(lcyon) remote_address=165.132.26.68; submcom=/usr/torque/bin/qsub;;
372	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_address=136.172.44.147; submcom="/usr/local/bin/qsub";;
373	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
374	locat=parameter; exit;;
375	esac
376	fi
377
378
379	# CHECK, IF A VALID QUEUE HAS BEEN GIVEN
380	if [[ $no_default_queue != none ]]
381	then
382	error=false
383	ndq=$no_default_queue
384	case $remote_host in
385	(ibm) case $ndq in
386	(p690_express\|p690_standard\|p690_long) error=false;;
387	(*) error=true;;
388	esac;;
389	(ibmh) case $ndq in
390	(cluster\|express) error=false;;
391	(*) error=true;;
392	esac;;
393	(ibmkisti) case $ndq in
394	(class.32plus\|class.1-2\|class.2-32) error=false;;
395	(*) error=true;;
396	esac;;
397	(ibmku) case $ndq in
398	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
399	(*) error=true;;
400	esac;;
401	(ibms) case $ndq in
402	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
403	(*) error=true;;
404	esac;;
405	(lccrayb) case $ndq in
406	(dataq\|mpp1q\|mpp1testq\|mpp2q\|mpp2testq\|smp1q\|smp1testq\|specialm1q) error=false;;
407	(*) error=true;;
408	esac;;
409	(lccrayh) case $ndq in
410	(dataq\|mpp1q\|mpp1testq\|smp1q\|smp1testq\|specialm1q) error=false;;
411	(*) error=true;;
412	esac;;
413	(lccrayf) case $ndq in
414	(usup\|test*\|small\|large) error=false;;
415	(*) error=true;;
416	esac;;
417	(lcflow) case $ndq in
418	(cfd_lom_long.q\|cfd_him_long.q\|cfd_lom_serl.q\|cfd_lom_shrt.q\|cfd_him_shrt.q) error=false;;
419	(*) error=true;;
420	esac;;
421	(lckiaps) case $ndq in
422	(express\|normal) error=false;;
423	(*) error=true;;
424	esac;;
425	(lckyoto) case $ndq in
426	(eh\|ph) error=false;;
427	(*) error=true;;
428	esac;;
429	(lckyuh) case $ndq in
430	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
431	(*) error=true;;
432	esac;;
433	(lckyut) case $ndq in
434	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
435	(*) error=true;;
436	esac;;
437	(lctit) case $ndq in
438	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
439	(*) error=true;;
440	esac;;
441	(t3eb) case $ndq in
442	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
443	(*) error=true;;
444	esac;;
445	(t3eh) case $ndq in
446	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
447	(*) error=true;;
448	esac;;
449	(t3ej2\|t3ej5) case $ndq in
450	(low\|normal\|high) error=false;;
451	(*) error=true;;
452	esac;;
453	(t3es) case $ndq in
454	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
455	(*) error=true;;
456	esac;;
457	esac
458	if [[ $error = true ]]
459	then
460	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
461	locat=parameter; exit
462	else
463	queue=$no_default_queue
464	fi
465	fi
466
467
468
469	# CHECK THE CPU-TIME
470	# SPLIT TIME INTO HOURS, MINUTES, AND SECONDS
471	done=false
472	while [[ $done = false ]]
473	do
474	if (( $cputime <= 0 ))
475	then
476	printf "\n +++ wrong cpu-time or cpu-time missing"
477	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
478	printf "\n >>> "
479	read cputime 1>/dev/null 2>&1
480	else
481	done=true
482	fi
483	done
484	if [[ $remote_host = nech ]]
485	then
486	if (( tasks_per_node != 0 ))
487	then
488	(( cputime = cputime * tasks_per_node ))
489	elif [[ $numprocs != 0 ]]
490	then
491	(( cputime = cputime * numprocs ))
492	fi
493	fi
494	(( stunden = cputime / 3600 ))
495	(( resttime = cputime - stunden * 3600 ))
496	(( minuten = resttime / 60 ))
497	(( sekunden = resttime - minuten * 60 ))
498	timestring=${stunden}:${minuten}:${sekunden}
499
500
501
502	# CHECK THE MEMORY DEMAND
503	done=false
504	while [[ $done = false ]]
505	do
506	if (( memory <= 0 ))
507	then
508	printf "\n +++ wrong memory demand or memory demand missing"
509	printf "\n >>> Please type memory in MByte per process as INTEGER:"
510	printf "\n >>> "
511	read memory 1>/dev/null 2>&1
512	else
513	done=true
514	fi
515	done
516
517	if [[ $remote_host = nech ]]
518	then
519	if (( tasks_per_node != 0 ))
520	then
521	(( Memory = memory * tasks_per_node / 1000 ))
522	elif [[ $numprocs != 0 ]]
523	then
524	(( Memory = memory * numprocs / 1000 ))
525	else
526	(( Memory = memory / 1000 ))
527	fi
528	elif [[ $remote_host = lctit ]]
529	then
530	(( Memory = memory * tasks_per_node / 1000 ))
531	fi
532
533
534	# MEMORY DEMAND IN CASE OF OPENMP-USAGE ON IBM-SYSTEMS
535	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
536	then
537	(( memory = memory * threads_per_task ))
538	fi
539
540
541	# CALCULATE NUMBER OF REQUIRED NODES
542	if (( tasks_per_node != 0 ))
543	then
544	(( nodes = ( numprocs - 1 ) / ( tasks_per_node * threads_per_task ) + 1 ))
545	fi
546
547
548	# CALCULATE NUMBER OF PROCESSES PER NODE
549	(( processes_per_node = tasks_per_node * threads_per_task ))
550
551
552	# CALCULATE NUMBER OF MPI TASKS
553	(( mpi_tasks = numprocs / threads_per_task ))
554
555
556	# SET PORT NUMBER OPTION FOR CALLS OF ssh/scp, subjob AND batch_scp SCRIPTS
557	if [[ "$scp_port" != "" ]]
558	then
559	PORTOPT="-P $scp_port"
560	SSH_PORTOPT="-p $scp_port"
561	fi
562
563
564	# HEADER-OUTPUT
565	if [[ $verify = true ]]
566	then
567	printf "\n\n"
568	printf "#--------------------------------------------------------------# \n"
569	spalte1=SUBJOB;spalte2=$(date)
570	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
571	printf "\| \| \n"
572	printf "\| values of parameters/options: \| \n"
573	spalte1=$(echo local_host$punkte \| cut -c-20)
574	spalte2=$punkte$local_host
575	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
576	spalte1=$(echo remote_host$punkte \| cut -c-20)
577	spalte2=$punkte$remote_host
578	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
579	spalte1=$(echo queue$punkte \| cut -c-20)
580	spalte2=$punkte$queue
581	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
582	spalte1=$(echo memory$punkte \| cut -c-20)
583	spalte2="$punkte$memory mb"
584	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
585	spalte1=$(echo cputime$punkte \| cut -c-20)
586	spalte2="$punkte$cputime sec"
587	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
588	spalte1=$(echo job_name$punkte \| cut -c-20)
589	spalte2="$punkte$job_name"
590	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
591	printf "#--------------------------------------------------------------# \n\n"
592
593
594	# QUERY CHECK
595	antwort="dummy"
596	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
597	do
598	read antwort?" >>> continue (y/n) ? "
599	done
600	if [[ $antwort = n \|\| $antwort = N ]]
601	then
602	locat=verify; exit
603	fi
604	printf "\n"
605	fi
606
607
608
609	# GENERATE RANDOM IDENTIFIER, AND DETERMINE THE JOBNAME ON THE TARGET HOST
610	identifier=$RANDOM
611	job_on_remhost=${job_name}_${identifier}_$local_host
612	job_to_send=job_to_send_$identifier
613	if [[ $delete_dayfile = false ]]
614	then
615	remote_dayfile=${local_host}_${job_name}_result_$identifier
616	local_dayfile=${remote_host}_${job_name}
617	else
618	remote_dayfile=/dev/null
619	fi
620
621
622
623	# GENERATE THE BATCH-JOB SCRIPTS (FOR QUEUEING-SYSTEMS qsub/msub/LoadLeveler)
624	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
625	then
626
627	# GENERAL LOADLEVELER SETTINGS
628	execute_in_shell="#!/bin/ksh"
629	use_shell="# @ shell = /bin/ksh"
630	consumable_memory="ConsumableMemory($memory mb)"
631	class="# @ class = $queue"
632	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
633	network_to_use="# @ network.mpi = sn_all,shared,us"
634	data_limit="# @ data_limit = 1.76gb"
635	image_size="# @ image_size = 50"
636	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
637
638	if [[ $email_notification = none ]]
639	then
640	notify_user=""
641	else
642	notify_user="# @ notify_user = $email_notification"
643	if [[ $delete_dayfile = true ]]
644	then
645	notification='# @ notification = never'
646	fi
647	fi
648
649	if [[ $remote_host = ibmh ]]
650	then
651	data_limit=""
652	network_to_use=""
653	class="# @ class = $queue"
654	environment=""
655	rset="# @ rset = RSET_MCM_AFFINITY"
656	task_affinity="# @ task_affinity = core(1)"
657	elif [[ $remote_host = ibmkisti ]]
658	then
659	network_to_use="# @ network.MPI = sn_all,shared,US"
660	wall_clock_limit="# @ wall_clock_limit = $timestring"
661	if [[ $threads_per_task = 1 ]]
662	then
663	rset="# @ rset = RSET_MCM_AFFINITY"
664	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
665	fi
666	environment=""
667	use_shell=""
668	data_limit=""
669	image_size=""
670	elif [[ $remote_host = ibmku ]]
671	then
672	execute_in_shell="#!/usr/bin/ksh"
673	use_shell="# @ shell = /usr/bin/ksh"
674	consumable_memory=""
675	environment=""
676	network_to_use="# @ network.mpi = sn_all,shared,us"
677	data_limit=""
678	image_size=""
679	elif [[ $remote_host = ibms ]]
680	then
681	network_to_use="# @ network.mpi = csss,shared,us"
682	fi
683
684	cat > $job_to_send << %%END%%
685	$execute_in_shell
686	$use_shell
687
688	# @ job_type = parallel
689	# @ job_name = $job_name
690	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
691	# @ output = $remote_dayfile
692	# @ error = $remote_dayfile
693	$wall_clock_limit
694	$image_size
695	$class
696	$environment
697	$network_to_use
698	$data_limit
699	$rset
700	$mcm_affinity_options
701	$task_affinity
702	$notification
703	$notify_user
704
705	%%END%%
706
707	if (( nodes > 0 ))
708	then
709
710	if [[ $remote_host != ibmkisti ]]
711	then
712
713	cat >> $job_to_send << %%END%%
714	# @ node = $nodes
715	# @ tasks_per_node = $processes_per_node
716	# @ node_usage = $node_usage
717	# @ queue
718
719	%%END%%
720
721	else
722
723	cat >> $job_to_send << %%END%%
724	# @ total_tasks = $mpi_tasks
725	# @ blocking = unlimited
726	# @ queue
727
728	%%END%%
729
730	fi
731
732	else
733
734	cat >> $job_to_send << %%END%%
735	# @ blocking = unlimited
736	# @ total_tasks = $numprocs
737	# @ node_usage = $node_usage
738	# @ queue
739
740	%%END%%
741
742	fi
743
744	# WORKAROUND BECAUSE OF SILLY JOB FILTER ON ibmkisti
745	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
746	then
747	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
748	fi
749
750	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
751	then
752
753	cat > $job_to_send << %%END%%
754	#!/bin/ksh
755
756	# @ job_type = serial
757	# @ node_usage = $node_usage
758	# @ job_name = palm
759	# @ wall_clock_limit = ${timestring},$timestring
760	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
761	# @ output = $remote_dayfile
762	# @ error = $remote_dayfile
763	$class
764	$notification
765
766	# @ queue
767
768	%%END%%
769
770	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
771	then
772
773	if [[ "$feature" != "" ]]
774	then
775	featuredir="#PBS -l feature=$feature"
776	fi
777
778	if [[ $numprocs != 0 ]]
779	then
780	cat > $job_to_send << %%END%%
781	#!/bin/bash
782	#PBS -N $job_name
783	#PBS -l walltime=$timestring
784	#PBS -l nodes=$nodes:ppn=$processes_per_node
785	#PBS -o $remote_dayfile
786	#PBS -j oe
787	#PBS -q $queue
788	$featuredir
789
790	$module_calls
791
792	%%END%%
793
794	else
795
796	continue
797
798	fi
799
800	elif [[ $remote_host = lccrayf ]]
801	then
802
803	if [[ $numprocs != 0 ]]
804	then
805	cat > $job_to_send << %%END%%
806	#!/bin/bash -l
807	#SBATCH -J $job_name
808	#SBATCH -t $timestring
809	#SBATCH -N $nodes
810	#SBATCH --ntasks-per-node=$processes_per_node
811	#SBATCH -p $queue
812	#SBATCH -o $remote_dayfile
813	#SBATCH -e $remote_dayfile
814
815	$init_cmds
816	$module_calls
817
818	%%END%%
819
820	else
821	cat > $job_to_send << %%END%%
822	#!/bin/bash -l
823	#SBATCH -J $job_name
824	#SBATCH -t $timestring
825	#SBATCH -l ncpus=1
826	#SBATCH -l pmem=${memory}mb
827	#SBATCH -m abe
828	#SBATCH -o $remote_dayfile
829	#SBATCH -e $remote_dayfile
830
831	$init_cmds
832	$module_calls
833
834	%%END%%
835
836	fi
837
838	elif [[ $remote_host = lcflow ]]
839	then
840	if [ $memory -gt 1800 ]; then
841	use_himem=""
842	else
843	use_himem="#"
844	fi
845	if [[ $numprocs != 0 ]]
846	then
847	pe_set="#$ -pe impi41 $numprocs"
848	else
849	pe_set="#$ -pe impi41 1"
850	fi
851	if [[ $queue = default ]]
852	then
853	queue_set=""
854	else
855	queue_set="#$ -q $queue"
856	fi
857	[[ "$disc_space" = "" ]] && disc_space=50
858
859	cat > $job_to_send << %%END%%
860	#!/bin/bash
861	#$ -S /bin/bash
862	#$ -N $job_name
863	#$ -cwd
864	#$ -l h_rt=$timestring
865	#$ -l h_vmem=${memory}M
866	#$ -o $remote_dayfile
867	#$ -j y
868	$pe_set
869	#$ -R y
870	${use_himem}#$ -l highmem=true
871	#$ -l h_fsize=${disc_space}G
872	$queue_set
873
874	%%END%%
875
876	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
877	then
878
879	if [[ $numprocs != 0 ]]
880	then
881	cat > $job_to_send << %%END%%
882	#!/bin/ksh
883	#PBS -N $job_name
884	#PBS -l walltime=$timestring
885	#PBS -l ncpus=$numprocs
886	#PBS -l pmem=${memory}mb
887	#PBS -o $remote_dayfile
888	#PBS -l nodes=$nodes:ppn=${processes_per_node}
889	#PBS -j oe
890
891	mpd &
892
893	%%END%%
894
895	else
896	cat > $job_to_send << %%END%%
897	#!/bin/ksh
898	#PBS -N $job_name
899	#PBS -l walltime=$timestring
900	#PBS -l ncpus=1
901	#PBS -l pmem=${memory}mb
902	#PBS -o $remote_dayfile
903	#PBS -j oe
904
905	%%END%%
906
907	fi
908
909	elif [[ $remote_host = lckiaps ]]
910	then
911
912	if [[ $numprocs != 0 ]]
913	then
914	cat > $job_to_send << %%END%%
915	#!/bin/ksh
916	#PBS -N $job_name
917	#PBS -l walltime=$timestring
918	#PBS -l select=1:ncpus=$numprocs
919	#PBS -l pmem=${memory}mb
920	#PBS -q $queue
921	#PBS -o $remote_dayfile
922	#PBS -j oe
923	#PBS -V
924
925	%%END%%
926
927	else
928	cat > $job_to_send << %%END%%
929	#!/bin/ksh
930	#PBS -N $job_name
931	#PBS -l walltime=$timestring
932	#PBS -l ncpus=1
933	#PBS -l pmem=${memory}mb
934	#PBS -o $remote_dayfile
935	#PBS -j oe
936
937	%%END%%
938
939	fi
940
941	elif [[ $remote_host = lcyon ]]
942	then
943
944	if [[ $numprocs != 0 ]]
945	then
946	cat > $job_to_send << %%END%%
947	#!/bin/ksh
948	#PBS -N $job_name
949	#PBS -l walltime=$timestring
950	#PBS -l ncpus=$numprocs
951	#PBS -l pmem=${memory}mb
952	#PBS -o $remote_dayfile
953	#PBS -j oe
954
955	%%END%%
956
957	else
958	cat > $job_to_send << %%END%%
959	#!/bin/ksh
960	#PBS -N $job_name
961	#PBS -l walltime=$timestring
962	#PBS -l ncpus=1
963	#PBS -l pmem=${memory}mb
964	#PBS -o $remote_dayfile
965	#PBS -j oe
966
967	%%END%%
968
969	fi
970
971	elif [[ $remote_host = lcxe6 ]]
972	then
973
974	if [[ $numprocs != 0 ]]
975	then
976	cat > $job_to_send << %%END%%
977	#!/bin/ksh
978	#PBS -S /bin/ksh
979	#PBS -N $job_name
980	#PBS -A $project_account
981	#PBS -j oe
982	#PBS -l walltime=$timestring
983	#PBS -l mppwidth=${numprocs}
984	#PBS -l mppnppn=${processes_per_node}
985	#PBS -m abe
986	#PBS -o $remote_dayfile
987	$email_directive
988
989	$init_cmds
990	$module_calls
991
992	%%END%%
993
994	else
995	cat > $job_to_send << %%END%%
996	#!/bin/ksh
997	#PBS -S /bin/ksh
998	#PBS -N $job_name
999	#PBS -A $project_account
1000	#PBS -j oe
1001	#PBS -l walltime=$timestring
1002	#PBS -l ncpus=1
1003	#PBS -l pmem=${memory}mb
1004	#PBS -m abe
1005	$email_directive
1006	#PBS -o $remote_dayfile
1007
1008	$init_cmds
1009	$module_calls
1010
1011	%%END%%
1012
1013	fi
1014
1015	elif [[ $remote_host = lckyoto ]]
1016	then
1017
1018	cat > $job_to_send << %%END%%
1019	#!/bin/ksh
1020	# @\$-o $remote_dayfile
1021	# @\$-eo -oi
1022	# @\$-lP 16
1023	# @\$-lp 1
1024	# @\$-lm 28gb -llm unlimited -ls unlimited
1025	# @\$-q $queue
1026	# @\$-Pvn abs_pack
1027	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
1028	#. /thin/local/etc/setprofile/intel-11.0.sh
1029	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
1030	. ~/.myprofile
1031	#. /home2/t/t51254/palm/current_version/myprofile
1032	#. /thin/apps/pgi/mpi.sh
1033	#
1034	env
1035	#
1036	set -x
1037
1038	%%END%%
1039
1040	elif [[ $remote_host = lcxt5m ]]
1041	then
1042
1043	if [[ $numprocs != 0 ]]
1044	then
1045	cat > $job_to_send << %%END%%
1046	#!/bin/ksh
1047	#PBS -S /bin/ksh
1048	#PBS -N $job_name
1049	#PBS -j oe
1050	#PBS -l walltime=$timestring
1051	#PBS -l mppwidth=${numprocs}
1052	#PBS -l mppnppn=${processes_per_node}
1053	#PBS -m abe
1054	#PBS -o $remote_dayfile
1055
1056	$init_cmds
1057	$module_calls
1058
1059	%%END%%
1060
1061	else
1062	cat > $job_to_send << %%END%%
1063	#!/bin/ksh
1064	#PBS -S /bin/ksh
1065	#PBS -N $job_name
1066	#PBS -j oe
1067	#PBS -l walltime=$timestring
1068	#PBS -l ncpus=1
1069	#PBS -l pmem=${memory}mb
1070	#PBS -m abe
1071	#PBS -o $remote_dayfile
1072
1073	$init_cmds
1074	$module_calls
1075
1076	%%END%%
1077
1078	fi
1079
1080	elif [[ $remote_host = lckyuh ]]
1081	then
1082	cat > $job_to_send << %%END%%
1083	#!/bin/bash
1084	#PJM -L "rscgrp=$queue"
1085	#PJM -L "node=$nodes"
1086	#PJM --mpi "proc=$numprocs"
1087	#PJM -L "elapse=$timestring"
1088	#PJM -o $remote_dayfile
1089	#PJM -j
1090	#PJM -X
1091	#PJM --no-stging
1092
1093	export LANG=en_US.UTF-8
1094	%%END%%
1095
1096	elif [[ $remote_host = lckyut ]]
1097	then
1098	cat > $job_to_send << %%END%%
1099	#!/bin/bash
1100	#PJM -L "rscgrp=$queue"
1101	#PJM -L "vnode=$numprocs"
1102	#PJM -L "vnode-core=1"
1103	#PJM -L "elapse=$timestring"
1104	#PJM --mpi proc=$numprocs
1105	#PJM -o $remote_dayfile
1106	#PJM -j
1107	#PJM -X
1108	#PJM --no-stging
1109
1110	export LANG=en_US.UTF-8
1111	%%END%%
1112
1113	elif [[ $remote_host = nech ]]
1114	then
1115
1116	if (( nodes > 1 ))
1117	then
1118	cat > $job_to_send << %%END%%
1119	#!/bin/ksh
1120	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1121	#PBS -l ${qsubmem}=${Memory}gb
1122	#PBS -b $nodes
1123	#PBS -o $remote_dayfile
1124	#PBS -N palm
1125	#PBS -j o
1126	#PBS -T mpisx
1127
1128	%%END%%
1129
1130	elif [[ $numprocs != 0 ]]
1131	then
1132	cat > $job_to_send << %%END%%
1133	#!/bin/ksh
1134	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1135	#PBS -l ${qsubmem}=${Memory}gb
1136	#PBS -o $remote_dayfile
1137	#PBS -N palm
1138	#PBS -j o
1139
1140	%%END%%
1141
1142	else
1143	cat > $job_to_send << %%END%%
1144	#!/bin/ksh
1145	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1146	#PBS -o $remote_dayfile
1147	#PBS -j o
1148
1149	%%END%%
1150
1151	fi
1152
1153	elif [[ $remote_host = lctit ]]
1154	then
1155	cat > $job_to_send << %%END%%
1156	#!/bin/ksh
1157	$init_cmds
1158	$module_calls
1159
1160	%%END%%
1161
1162	# SET OPTIONS FOR SUBMIT-COMMAND
1163	if [[ $tasks_per_node != $processes_per_node ]]
1164	then
1165	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -et 1 -q $queue "
1166	else
1167	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -et 1 -q $queue "
1168	fi
1169
1170	else
1171
1172	cat > $job_to_send << %%END%%
1173	# @\$-q ${queue}
1174	# @\$-l${qsubtime} $timestring
1175	# @\$-l${qsubmem} ${memory}mb
1176	# @\$-o $remote_dayfile
1177	# @\$-eo
1178
1179	%%END%%
1180
1181	fi
1182
1183
1184	# IN CASE OF JOBS EXECUTING ON REMOTE-HOSTS, THE TRANSFER OF THE DAYFILES
1185	# TO THE LOCAL HOSTS WILL BE INITIATED BY TRAP ON EXIT
1186	# NO TRANSFER POSSIBLE ON IBM IN SEOUL
1187	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1188	then
1189	echo "set +vx" >> $job_to_send
1190	echo "trap '" >> $job_to_send
1191	echo "set +vx" >> $job_to_send
1192	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $remote_host = lccrayb \|\| $remote_host = lccrayh \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lcflow \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* \|\| $remote_host = lcxe6 ]]
1193	then
1194	if [[ $remote_host = ibmh ]]
1195	then
1196	return_queue=c1
1197	elif [[ $remote_host = ibmkisti ]]
1198	then
1199	return_queue=class.1-2
1200	elif [[ $remote_host = ibmku ]]
1201	then
1202	return_queue=sdbg2
1203	elif [[ $remote_host = ibms ]]
1204	then
1205	return_queue=p_normal
1206	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1207	then
1208	return_queue=dataq
1209	elif [[ $remote_host = lcxe6 ]]
1210	then
1211	return_queue=debug
1212	elif [[ $remote_host = lckiaps ]]
1213	then
1214	return_queue=express
1215	elif [[ $remote_host = lckyuh ]]
1216	then
1217	return_queue=cx-single
1218	elif [[ $remote_host = lckyut ]]
1219	then
1220	return_queue=cx-single
1221	else
1222	return_queue=unknown
1223	fi
1224
1225	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1226	then
1227
1228	if [[ $remote_host = ibmku ]]
1229	then
1230	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1231	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1232	else
1233	echo "echo \"#!/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1234	fi
1235	echo "echo \"# @ job_type = serial\" >> scpjob.$identifier" >> $job_to_send
1236	echo "echo \"# @ job_name = transfer\" >> scpjob.$identifier" >> $job_to_send
1237	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$identifier" >> $job_to_send
1238	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$identifier " >> $job_to_send
1239	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1240	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1241	if [[ $host != "ibmh" ]]
1242	then
1243	echo "echo \"# @ class = $return_queue\" >> scpjob.$identifier" >> $job_to_send
1244	fi
1245	echo "echo \"# @ image_size = 10\" >> scpjob.$identifier" >> $job_to_send
1246	echo "echo \"# @ notification = never\" >> scpjob.$identifier" >> $job_to_send
1247
1248	echo "echo \"# @ queue\" >> scpjob.$identifier" >> $job_to_send
1249	echo "echo \" \" >> scpjob.$identifier" >> $job_to_send
1250
1251	echo "echo \"set -x\" >> scpjob.$identifier" >> $job_to_send
1252	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$identifier" >> $job_to_send
1253	if [[ $remote_host = ibmku ]]
1254	then
1255	echo "echo \"rm scpjob.$identifier\" >> scpjob.$identifier" >> $job_to_send
1256	fi
1257	echo "echo \"exit\" >> scpjob.$identifier" >> $job_to_send
1258
1259	elif [[ $remote_host = nech ]]
1260	then
1261	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1262	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1263	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1264	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1265	echo "#PBS -j o" >> $job_to_send
1266	echo " " >> $job_to_send
1267	echo "set -x" >> $job_to_send
1268	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1269	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1270	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1271	echo "%%END%%" >> $job_to_send
1272
1273	elif [[ $remote_host = lckyuh ]]
1274	then
1275	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1276	echo "#!/bin/bash" >> $job_to_send
1277	echo "#PJM -L \"node=1\"" >> $job_to_send
1278	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1279	echo "#PJM --no-stging" >> $job_to_send
1280	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1281	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1282	echo "#PJM -j" >> $job_to_send
1283	echo " " >> $job_to_send
1284	echo "export LANG=en_US.UTF-8" >> $job_to_send
1285	echo "set -x" >> $job_to_send
1286	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1287	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1288	echo "%%END%%" >> $job_to_send
1289
1290	elif [[ $remote_host = lckyut ]]
1291	then
1292	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1293	echo "#!/bin/bash" >> $job_to_send
1294	echo "#PJM -L \"vnode=1\"" >> $job_to_send
1295	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1296	echo "#PJM --no-stging" >> $job_to_send
1297	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1298	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1299	echo "#PJM -j" >> $job_to_send
1300	echo " " >> $job_to_send
1301	echo "export LANG=en_US.UTF-8" >> $job_to_send
1302	echo "set -x" >> $job_to_send
1303	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1304	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1305	echo "%%END%%" >> $job_to_send
1306
1307	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1308	then
1309	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1310	echo "#!/bin/bash" >> $job_to_send
1311	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1312	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1313	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1314	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1315	echo "#PBS -j oe" >> $job_to_send
1316	echo " " >> $job_to_send
1317	echo "set -x" >> $job_to_send
1318	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1319	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1320	echo "%%END%%" >> $job_to_send
1321
1322	elif [[ $remote_host = lcflow ]]
1323	then
1324	echo "cat > scpjob.${identifier}.tmp << %%END%%" >> $job_to_send
1325	echo "#!/bin/bash" >> $job_to_send
1326	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
1327	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
1328	echo "SGEPREFIX -cwd" >> $job_to_send
1329	echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
1330	echo "SGEPREFIX -l h_vmem=500M" >> $job_to_send
1331	echo "SGEPREFIX -l excl_flow=false" >> $job_to_send
1332	echo "SGEPREFIX -j y" >> $job_to_send
1333	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$identifier" >> $job_to_send
1334	echo " " >> $job_to_send
1335	echo "set -x" >> $job_to_send
1336	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
1337	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
1338	echo "" >> $job_to_send
1339	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1340	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1341	echo "rm -f scpjob.${identifier}" >> $job_to_send
1342	echo "%%END%%" >> $job_to_send
1343	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${identifier}.tmp > scpjob.${identifier}" >> $job_to_send
1344	echo "rm -f scpjob.${identifier}.tmp" >> $job_to_send
1345	elif [[ $remote_host = lcxe6 ]]
1346	then
1347	echo "cat > scpjob.${identifier} << %%END%%" >> $job_to_send
1348	echo "#!/bin/ksh" >> $job_to_send
1349	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1350	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1351	echo "#PBS -A $project_account" >> $job_to_send
1352	echo "#PBS -l mppwidth=1" >> $job_to_send
1353	echo "#PBS -l mppnppn=1" >> $job_to_send
1354	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1355	echo "#PBS -j oe" >> $job_to_send
1356	echo " " >> $job_to_send
1357	echo "set -x" >> $job_to_send
1358	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1359	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1360	echo "%%END%%" >> $job_to_send
1361	else
1362
1363	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1364	echo "# @\\\$-q $return_queue" >> $job_to_send
1365	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1366	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1367	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1368	then
1369	echo "# @\$-l mpp_p=0" >> $job_to_send
1370	fi
1371	echo '# @\$-lF 10mb' >> $job_to_send
1372	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1373	echo '# @\\\$-eo' >> $job_to_send
1374	echo " " >> $job_to_send
1375	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1376	then
1377	echo "set +vx" >> $job_to_send
1378	echo ". .profile" >> $job_to_send
1379	fi
1380	echo "set -x" >> $job_to_send
1381	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1382	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1383	echo "%%END%%" >> $job_to_send
1384	fi
1385
1386	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1387	then
1388	echo "llsubmit scpjob.$identifier" >> $job_to_send
1389	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1390	then
1391	echo "msub -q $return_queue scpjob.$identifier" >> $job_to_send
1392	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1393	then
1394	echo "qsub -J n scpjob.$identifier" >> $job_to_send
1395	elif [[ $remote_host = t3es ]]
1396	then
1397	echo "qsub -J n -s /bin/ksh scpjob.$identifier" >> $job_to_send
1398	elif [[ $remote_host = lckiaps ]]
1399	then
1400	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1401	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"$submcom ${job_catalog}/scpjob.$identifier\" " >> $job_to_send
1402	echo "rm ${job_catalog}/scpjob.$identifier" >> $job_to_send
1403	elif [[ $remote_host = lckyu* ]]
1404	then
1405	echo "scp $PORTOPT scpjob.$identifier ${remote_username}@${remote_address}:job_queue" >> $job_to_send
1406	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"cd job_queue; $submcom scpjob.$identifier; rm scpjob.$identifier\" " >> $job_to_send
1407	elif [[ $remote_host = lcflow ]]
1408	then
1409	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1410	echo "/usr/bin/ssh ${remote_username}@${remote_address} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$identifier\" " >> $job_to_send
1411	else
1412	echo "$submcom scpjob.$identifier" >> $job_to_send
1413	fi
1414	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
1415	then
1416	echo "rm scpjob.$identifier" >> $job_to_send
1417	fi
1418	if [[ $remote_host = nech ]]
1419	then
1420	echo "cd -" >> $job_to_send
1421	fi
1422	else
1423	# echo "ftpcopy -d $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1424	# ??? funktioniert das ÃŒberhaupt noch ???
1425	echo "nohup ftpcopy -d -w 15 $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1426	fi
1427	echo "set -x" >> $job_to_send
1428	echo " ' exit" >> $job_to_send
1429	echo "set -x" >> $job_to_send
1430	fi
1431
1432
1433
1434	# APPEND THE JOB-FILE (CREATE BY mrun) TO THE JOB-DIRECTIVES GENERATED ABOVE
1435	cat $file_to_send >> $job_to_send
1436
1437	if [[ $remote_host = ibm ]]
1438	then
1439	echo " " >> $job_to_send
1440	echo "exit" >> $job_to_send
1441	fi
1442
1443	# REMOVE JOB-FILE
1444	if [[ $remote_host = lctit \|\| $remote_host = ibmku \|\| $remote_host = lcflow ]]
1445	then
1446	echo " " >> $job_to_send
1447	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1448	fi
1449
1450
1451	# TRANSFER JOB TO THE TARGET HOST (JOB-DIRECTORY)
1452	if [[ $no_submit = false ]]
1453	then
1454	if [[ $remote_host != $local_host ]]
1455	then
1456	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1457	if [[ $remote_host = ibms ]] # ssh on ibms cannot handle "~/"
1458	then
1459	job_catalog_save=$job_catalog
1460	job_catalog=job_queue
1461	elif [[ $remote_host = nech ]]
1462	then
1463	job_catalog_save=$job_catalog
1464	job_catalog=/hpf/b/${remote_user}/job_queue
1465	fi
1466	if [[ $remote_host = nech ]]
1467	then
1468	# FILES CAN ONLY BE TRANSFERED VIA DKRZ'S ARCHIVE-SERVER
1469	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1470	else
1471	scp $PORTOPT $job_to_send ${remote_user}@${remote_address}:${job_catalog}/$job_on_remhost
1472	fi
1473	if [[ $? = 1 ]]
1474	then
1475	locat=scp; exit
1476	fi
1477	if [[ $remote_host = ibms ]]
1478	then
1479	job_catalog=$job_catalog_save
1480	fi
1481	[[ $verify = true ]] && printf "\n >>> finished\n"
1482	else
1483	eval job_catalog=$job_catalog
1484	cp $job_to_send ${job_catalog}/$job_on_remhost
1485	fi
1486
1487
1488
1489	# START NQS- / LOADLEVELER-JOB
1490	if [[ $remote_host != $local_host ]]
1491	then
1492	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1493
1494	if [[ $remote_host = ibmku ]]
1495	then
1496	ssh $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1497	elif [[ $remote_host = lcflow ]]
1498	then
1499	/usr/bin/ssh $SSH_PORTOPT $remote_address -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
1500	else
1501	ssh $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1502	fi
1503
1504	[[ $verify = true ]] && printf " >>> o.k.\n"
1505	else
1506	cd $job_catalog
1507	if [[ $(echo $local_host \| cut -c1-3) = ibm \|\| $(echo $local_host \| cut -c1-6) = lccray ]]
1508	then
1509	eval $submcom $job_on_remhost
1510	elif [[ $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyu* ]]
1511	then
1512	chmod u+x $job_on_remhost
1513	eval $submcom $job_on_remhost
1514	elif [[ $local_host = nech ]]
1515	then
1516	if [[ $queue = default ]]
1517	then
1518	eval $submcom $job_on_remhost
1519	else
1520	eval $submcom -q $queue $job_on_remhost
1521	fi
1522	else
1523	qsub $job_on_remhost
1524	fi
1525
1526	# JOBFILE MUST NOT BE DELETED ON lctit/ibmku/lcflow. THIS WILL BE DONE
1527	# AT THE END OF THE JOB
1528	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
1529	then
1530	rm $job_on_remhost
1531	fi
1532	cd - > /dev/null
1533	fi
1534	fi
1535
1536
1537
1538	# FINAL ACTIONS
1539	if [[ $no_submit = false ]]
1540	then
1541	rm -f $job_to_send
1542	fi
1543	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |