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source: palm/trunk/SCRIPTS/subjob @ 1468

Last change on this file since 1468 was 1468, checked in by maronga, 10 years ago
New flag files allow to force unscheduled termination/restarts of batch jobs, progress output is made for batch runs, small adjustments for lxce6 and lccrayh/lccrayb
Property svn:keywords set to `Id Rev`
File size: 52.1 KB

Line
1	#!/bin/ksh
2
3	# subjob - script for automatic generation and submission of batch-job files
4	# for various batch queuing systems
5
6	#--------------------------------------------------------------------------------#
7	# This file is part of PALM.
8	#
9	# PALM is free software: you can redistribute it and/or modify it under the terms
10	# of the GNU General Public License as published by the Free Software Foundation,
11	# either version 3 of the License, or (at your option) any later version.
12	#
13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
16	#
17	# You should have received a copy of the GNU General Public License along with
18	# PALM. If not, see <http://www.gnu.org/licenses/>.
19	#
20	# Copyright 1997-2014 Leibniz Universitaet Hannover
21	#--------------------------------------------------------------------------------#
22	#
23	# Current revisions:
24	# ------------------
25	# Typo removed (addres->address)
26	# Adjustments for lcxe6
27	#
28	# Former revisions:
29	# -----------------
30	# $Id: subjob 1468 2014-09-24 14:06:57Z maronga $
31	#
32	# 1452 2014-08-22 09:41:06Z heinze
33	# local hosts for blizzard added
34	#
35	# 1450 2014-08-21 07:31:51Z heinze
36	# HLRN-III (lccrayb): testq queue adjusted to mpp1testq
37	#
38	# 1442 2014-07-28 07:09:10Z raasch
39	# HLRN-III (lccrayb/lccrayh) queues adjusted
40	#
41	# 1378 2014-04-28 06:04:58Z raasch
42	# -et option added for lctit
43	#
44	# 1350 2014-04-04 13:01:30Z maronga
45	# location of qsub updated for lcxe6
46	#
47	# 1289 2014-03-04 07:12:34Z raasch
48	# German comments translated to English
49	# fimm-, necriam-, scirocco-, ibmy-, and sgi-specific code removed
50	#
51	# 1279 2014-01-28 12:10:14Z raasch
52	# node calculation modified due to changes in mrun (tasks_per_node must not be
53	# an integral divisor of numprocs any more)
54	#
55	# 1274 2014-01-09 13:14:54Z heinze
56	# adjustments for lccrayh
57	#
58	# 1266 2013-12-11 12:07:34Z heinze
59	# further adjustments for lccrayb (use msub instead of qsub)
60	#
61	# 1264 2013-12-09 12:46:09Z fricke
62	# Bugfix: Using number of nodes instead of number of processors (lccrayb)
63	#
64	# 1262 2013-12-09 10:57:20Z fricke
65	# further adjustments for lccrayb
66	#
67	# 1260 2013-12-04 12:48:04Z raasch
68	# jaboticaba admitted
69	#
70	# 1255 2013-11-07 14:43:35Z raasch
71	# further adjustments for lccrayb
72	#
73	# 1224 2013-09-16 07:27:23Z raasch
74	# first adjustments for lccrayb
75	#
76	# 1202 2013-07-10 16:22:07Z witha
77	# adjustments for Forwind cluster (lcflow)
78	#
79	# 1199 2013-07-05 14:52:22Z raasch
80	# adjustments for CSC Helsinki (lccrayf)
81	#
82	# use of cluster/express queue enabled (ibmh)
83	# vinessa added (imuk)
84	#
85	# 1103 2013-02-20 02:15:53Z raasch
86	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
87	# instead typeset -L/R),
88	# further adjustments for lckyuh
89	#
90	# 2013-02-10 01:47:43Z raasch
91	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
92	# and for Forwind cluster (lcflow)
93	#
94	# 1094 2013-02-03 01:52:12Z raasch
95	# new option -P for explicit setting of ssh/scp port,
96	# decalpha parts (yonsei) removed
97	#
98	# 2013-02-02 07:06:13Z raasch
99	# adjustments for Kyushu-University computing center (lckyut - tatara)
100	# old changelog messages removed
101	#
102	# 1046 2012-11-09 14:38:45Z maronga
103	# code put under GPL (PALM 3.9)
104	#
105	# 08/07/94 - Siggi - first version finished
106	# 29/06/94 - Siggi - script development started
107	#--------------------------------------------------------------------------------#
108	# subjob - script for automatic generation and submission of batch-job files
109	# for various batch queuing systems
110	#--------------------------------------------------------------------------------#
111
112
113	# VARIABLE-DECLARATIONS AND DEFAULT VALUES
114	delete_dayfile=false
115	email_notification=none
116	group_number=none
117	locat=normal
118	no_default_queue=none
119	no_submit=false
120	job_catalog="~/job_queue"
121	job_name=none
122	local_user=$LOGNAME
123	node_usage=shared
124	numprocs=0
125	punkte="..........................................................."
126	submcom=qsub
127	queue=default
128	remote_host=none
129	remote_user=""
130	verify=true
131
132	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
133	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
134
135
136
137	# ERROR HANDLING
138	# IN CASE OF EXIT:
139	trap 'if [[ $locat != normal ]]
140	then
141	case $locat in
142	(option) printf "\n --> available optios can be displayed"
143	printf " by typing:"
144	printf "\n \"subjob ?\" \n";;
145	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
146	(*) printf "\n +++ unknown error"
147	printf "\n please inform S. Raasch!\n"
148	esac
149	[[ -f $job_to_send ]] && rm $job_to_send
150	printf "\n\n+++ SUBJOB killed \n\n"
151	fi' exit
152
153
154	# IN CASE OF TERMINAL-BREAK:
155	trap '[[ -f $job_to_send ]] && rm $job_to_send
156	printf "\n\n+++ SUBJOB killed \n\n"
157	exit
158	' 2
159
160
161
162
163	# DETERMINE NAME OF LOCAL HOST
164	local_host=$(hostname)
165
166
167
168	# SET HOST-SPECIFIC VARIABLES VEREINBAREN (CHECK, IF LOCAL HOST
169	# IS ADMITTED AT ALL)
170	# NOTE: ONE OF THE ENTRIES FOR "lck" OR "lckordi" ALWAYS HAS TO BE
171	# COMMENT OUT, BECAUSE THE HOSTNAME (node*) IS SAME FOR BOTH MACHINES
172	case $local_host in
173	(ambiel-lx) local_address=134.106.74.48; local_host=lcfor;;
174	(atmos) local_address=172.20.25.35; local_host=lcide;;
175	(austru) local_address=130.75.105.128; local_host=lcmuk;;
176	(autan) local_address=130.75.105.57; local_host=lcmuk;;
177	(bora) local_address=130.75.105.103; local_host=lcmuk;;
178	(b04*) local_address=133.5.4.33; local_host=lckyuh;;
179	(blizzard1\|p*) local_address=136.172.40.15; local_host=ibmh;;
180	(blizzard2\|p*) local_address=136.172.40.16; local_host=ibmh;;
181	(blogin\|bxc) local_address=130.73.233.1; local_host=lccrayb;;
182	(hlogin\|hxc) local_address=130.75.4.1; local_host=lccrayh;;
183	(breva) local_address=130.75.105.98; local_host=lcmuk;;
184	(buran) local_address=130.75.105.58; local_host=lcmuk;;
185	(caurus) local_address=130.75.105.19; local_host=lcmuk;;
186	(climate*) local_address=165.132.26.68; local_host=lcyon;;
187	(clogin*) local_address=86.50.166.21; local_host=lccrayf;;
188	(cs*) local_address=136.172.44.131; local_host=nech;;
189	(elephanta) local_address=130.75.105.6; local_host=lcmuk;;
190	(flow01) local_address=10.141.255.71; local_host=lcflow;;
191	(flow02) local_address=10.141.255.72; local_host=lcflow;;
192	(node*) local_address=165.132.26.61 local_host=lck;;
193	# (node*) local_address=210.219.61.8 local_host=lckordi;;
194	(gaia*) local_address=150.183.146.24; local_host=ibmkisti;;
195	(gallego) local_address=130.75.105.10; local_host=lcmuk;;
196	(gregale) local_address=130.75.105.109; local_host=lcmuk;;
197	(hababai) local_address=130.75.105.108; local_host=lcmuk;;
198	(hayaka*) local_address=133.5.4.33; local_host=lckyuh;;
199	(hexagon.bccs.uib.no) local_address=129.177.20.113; local_host=lcxe6;;
200	(hx*) local_address=133.3.51.11; local_host=lckyoto;;
201	(inferno) local_address=130.75.105.5; local_host=lcmuk;;
202	(irifi) local_address=130.75.105.104; local_host=lcmuk;;
203	(jaboticaba) local_address=150.163.25.181; local_host=lcbr;;
204	(sno) local_address=130.75.105.113; local_host=lcmuk;;
205	(levanto) local_address=130.75.105.45; local_host=lcmuk;;
206	(login*) local_address=118.128.66.223; local_host=lckiaps;;
207	(maestro) local_address=130.75.105.2; local_host=lcmuk;;
208	(meller) local_address=134.106.74.155; local_host=lcfor;;
209	(meteo-login*) local_address=193.166.211.144;local_host=lcxt5m;;
210	(hexagon*) local_address=129.177.20.113; local_host=lcxe6;;
211	(nobel*) local_address=150.183.5.101; local_host=ibms;;
212	(orkan) local_address=130.75.105.3; local_host=lcmuk;;
213	(ostria) local_address=130.75.105.106; local_host=lcmuk;;
214	(paesano) local_address=130.75.105.46; local_host=lcmuk;;
215	(pcj*) local_address=172.31.120.1; local_host=lckyut;;
216	(pingui) local_address=134.106.74.118; local_host=lcfor;;
217	(quanero) local_address=130.75.105.107; local_host=lcmuk;;
218	(rte*) local_address=133.5.185.60; local_host=lcrte;;
219	(shiokaze-lx) local_address=134.106.74.123; local_host=lcfor;;
220	(sisu-login*) local_address=86.50.166.21; local_host=lccrayf;;
221	(solano) local_address=130.75.105.110; local_host=lcmuk;;
222	(sugoka*) local_address=172.31.120.1; local_host=lckyut;;
223	(t2a*) local_address=10.1.6.165; local_host=lctit;;
224	(urban*) local_address=147.46.30.151 local_host=lcsb;;
225	(vinessa) local_address=130.75.105.112; local_host=lcmuk;;
226	(vorias) local_address=172.20.25.43; local_host=lcmuk;;
227	(*.cc.kyushu-u.ac.jp) local_address=133.5.4.129; local_host=ibmku;;
228	(*) printf "\n +++ \"$local_host\" unknown";
229	printf "\n please contact the PALM group at IMUK";
230	locat=parameter; exit;;
231	esac
232
233
234
235	# BY DEFAULT, THE REMOTE HOST IS THE LOCAL HOST
236	remote_host=$local_host
237
238
239
240
241	# READ THE SHELLSCRIPT-OPTIONS
242	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
243	do
244	case $option in
245	(c) job_catalog=$OPTARG;;
246	(d) delete_dayfile=true;;
247	(D) no_submit=true;;
248	(e) email_notification=$OPTARG;;
249	(g) group_number=$OPTARG;;
250	(h) remote_host=$OPTARG;;
251	(m) memory=$OPTARG;;
252	(n) job_name=$OPTARG;;
253	(N) node_usage=$OPTARG;;
254	(O) threads_per_task=$OPTARG;;
255	(P) scp_port=$OPTARG;;
256	(q) no_default_queue=$OPTARG;;
257	(t) cputime=$OPTARG;;
258	(T) tasks_per_node=$OPTARG;;
259	(u) remote_user=$OPTARG;;
260	(v) verify=false;;
261	(X) numprocs=$OPTARG;;
262	(\?) printf "\n +++ Option $OPTARG unknown \n";
263	locat=option; exit;;
264	esac
265	done
266
267
268	# GET THE NAME OF THE JOBFILE AS NEXT ARGUMENT
269	(( to_shift = $OPTIND - 1 ))
270	shift $to_shift; file_to_send=$1
271
272
273	# OUTPUT OF SHORT DESCRIPTION OF SCRIPT-OPTIONS
274	if [ "$1" = "?" ]
275	then
276	(printf "\n *** subjob can be called as follows:\n"
277	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
278	printf "\n Description of available options:\n"
279	printf "\n Option Description Default-Value"
280	printf "\n -c job-input- and output-catalog ~/job_queue"
281	printf "\n -d no job-protocol will be created ---"
282	printf "\n -D only the job-file will be created ---"
283	printf "\n -h execution host, available hosts: $remote_host"
284	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, lc...,"
285	printf "\n lckiaps, lctit, nech"
286	printf "\n -m memory demand per process in MByte ---"
287	printf "\n -n jobname <jobdatei>"
288	printf "\n -O threads per task (for OpenMP usage) 1"
289	printf "\n -P ssh/scp port default port"
290	printf "\n -q job-queue to be used default"
291	printf "\n -t allowed cpu-time in seconds ---"
292	printf "\n -T tasks per node (on parallel hosts) ---"
293	printf "\n -u username on execution host from .netrc"
294	printf "\n -v no prompt for confirmation ---"
295	printf "\n -X # of processors (on parallel hosts) 1"
296	printf "\n "
297	printf "\n The only possible positional parameter is <jobfile>:"
298	printf "\n The complete NQS-job must be provided here."
299	printf "\n <jobfile>=? creates this outline\n\n") \| more
300	exit
301	fi
302
303
304
305	# CHECK, IF JOB-FILE HAS BEEN GIVEN AS ARGUMENT AND IF THE FILE ITSELF EXISTS
306	if [[ "$file_to_send" = "" ]]
307	then
308	printf "\n +++ job-file missing"
309	locat=parameter; exit
310	else
311	if [[ -f $file_to_send ]]
312	then
313	true
314	else
315	printf "\n +++ job-file: "
316	printf "\n $file_to_send"
317	printf "\n does not exist"
318	locat=parameter; exit
319	fi
320	fi
321
322
323
324	# IF NO JOBNAME HAS BEEN GIVEN, JOBNAME IS SET TO THE NAME OF THE JOB-FILE,
325	# PROVIDED THAT THE JOB-FILE NAME DOES NOT CONTAIN ANY PATH
326	if [[ $job_name = none ]]
327	then
328	job_name=$file_to_send
329	fi
330	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
331	then
332	printf "\n +++ job-file name: "
333	printf "\n $job_name"
334	printf "\n must not contain \"/\"-characters"
335	locat=parameter; exit
336	fi
337
338
339
340
341	# SET HOST-SPECIFIC QUANTITIES, OR TERMINATE IN CASE OF UNKNOWN HOST,
342	# OR IF NO HOST HAS BEEN GIVEN
343	if [[ $remote_host = none ]]
344	then
345	printf "\n +++ host missing"
346	locat=option; exit
347	else
348	case $remote_host in
349	(ibm) queue=p690_standard; remote_address=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
350	(ibmh) queue=cluster; remote_address=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
351	(ibmkisti) queue=class.32plus; remote_address=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
352	(ibmku) queue=s4; remote_address=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
353	(ibms) queue=p_normal; remote_address=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
354	(lccrayb) queue=mpp1testq; remote_address=130.73.233.1; submcom=/opt/moab/7.2.6/bin/msub;;
355	(lccrayh) queue=mpp1testq; remote_address=130.75.4.1; submcom=/opt/moab/7.2.6/bin/msub;;
356	(lccrayf) queue=small; remote_address=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
357	(lcflow) remote_address=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;;
358	(lckyoto) remote_address=133.3.51.11; submcom=/thin/local/bin/qsub;;
359	(lck) remote_address=165.132.26.61; submcom=/usr/torque/bin/qsub;;
360	(lckiaps) remote_address=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
361	(lckordi) remote_address=210.219.61.8; submcom=/usr/torque/bin/qsub;;
362	(lckyuh) remote_address=133.5.4.33; submcom=/usr/bin/pjsub;;
363	(lckyut) remote_address=133.5.4.37; submcom=/usr/bin/pjsub;;
364	(lcsb) remote_address=147.46.30.151; submcom=/usr/torque/bin/qsub;;
365	(lctit) queue=S; remote_address=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
366	(lcxe6) remote_address=129.177.20.113; submcom=/opt/torque/default/bin/qsub;;
367	(lcxt5m) remote_address=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
368	(lcyon) remote_address=165.132.26.68; submcom=/usr/torque/bin/qsub;;
369	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_address=136.172.44.147; submcom="/usr/local/bin/qsub";;
370	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
371	locat=parameter; exit;;
372	esac
373	fi
374
375
376	# CHECK, IF A VALID QUEUE HAS BEEN GIVEN
377	if [[ $no_default_queue != none ]]
378	then
379	error=false
380	ndq=$no_default_queue
381	case $remote_host in
382	(ibm) case $ndq in
383	(p690_express\|p690_standard\|p690_long) error=false;;
384	(*) error=true;;
385	esac;;
386	(ibmh) case $ndq in
387	(cluster\|express) error=false;;
388	(*) error=true;;
389	esac;;
390	(ibmkisti) case $ndq in
391	(class.32plus\|class.1-2\|class.2-32) error=false;;
392	(*) error=true;;
393	esac;;
394	(ibmku) case $ndq in
395	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
396	(*) error=true;;
397	esac;;
398	(ibms) case $ndq in
399	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
400	(*) error=true;;
401	esac;;
402	(lccrayb) case $ndq in
403	(dataq\|mpp1q\|mpp1testq\|smp1q\|smp1testq\|specialm1q) error=false;;
404	(*) error=true;;
405	esac;;
406	(lccrayh) case $ndq in
407	(dataq\|mpp1q\|mpp1testq\|smp1q\|smp1testq\|specialm1q) error=false;;
408	(*) error=true;;
409	esac;;
410	(lccrayf) case $ndq in
411	(usup\|test*\|small\|large) error=false;;
412	(*) error=true;;
413	esac;;
414	(lcflow) case $ndq in
415	(cfd_lom_long.q\|cfd_him_long.q\|cfd_lom_serl.q\|cfd_lom_shrt.q\|cfd_him_shrt.q) error=false;;
416	(*) error=true;;
417	esac;;
418	(lckiaps) case $ndq in
419	(express\|normal) error=false;;
420	(*) error=true;;
421	esac;;
422	(lckyoto) case $ndq in
423	(eh\|ph) error=false;;
424	(*) error=true;;
425	esac;;
426	(lckyuh) case $ndq in
427	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
428	(*) error=true;;
429	esac;;
430	(lckyut) case $ndq in
431	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
432	(*) error=true;;
433	esac;;
434	(lctit) case $ndq in
435	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
436	(*) error=true;;
437	esac;;
438	(t3eb) case $ndq in
439	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
440	(*) error=true;;
441	esac;;
442	(t3eh) case $ndq in
443	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
444	(*) error=true;;
445	esac;;
446	(t3ej2\|t3ej5) case $ndq in
447	(low\|normal\|high) error=false;;
448	(*) error=true;;
449	esac;;
450	(t3es) case $ndq in
451	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
452	(*) error=true;;
453	esac;;
454	esac
455	if [[ $error = true ]]
456	then
457	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
458	locat=parameter; exit
459	else
460	queue=$no_default_queue
461	fi
462	fi
463
464
465
466	# CHECK THE CPU-TIME
467	# SPLIT TIME INTO HOURS, MINUTES, AND SECONDS
468	done=false
469	while [[ $done = false ]]
470	do
471	if (( $cputime <= 0 ))
472	then
473	printf "\n +++ wrong cpu-time or cpu-time missing"
474	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
475	printf "\n >>> "
476	read cputime 1>/dev/null 2>&1
477	else
478	done=true
479	fi
480	done
481	if [[ $remote_host = nech ]]
482	then
483	if (( tasks_per_node != 0 ))
484	then
485	(( cputime = cputime * tasks_per_node ))
486	elif [[ $numprocs != 0 ]]
487	then
488	(( cputime = cputime * numprocs ))
489	fi
490	fi
491	(( stunden = cputime / 3600 ))
492	(( resttime = cputime - stunden * 3600 ))
493	(( minuten = resttime / 60 ))
494	(( sekunden = resttime - minuten * 60 ))
495	timestring=${stunden}:${minuten}:${sekunden}
496
497
498
499	# CHECK THE MEMORY DEMAND
500	done=false
501	while [[ $done = false ]]
502	do
503	if (( memory <= 0 ))
504	then
505	printf "\n +++ wrong memory demand or memory demand missing"
506	printf "\n >>> Please type memory in MByte per process as INTEGER:"
507	printf "\n >>> "
508	read memory 1>/dev/null 2>&1
509	else
510	done=true
511	fi
512	done
513
514	if [[ $remote_host = nech ]]
515	then
516	if (( tasks_per_node != 0 ))
517	then
518	(( Memory = memory * tasks_per_node / 1000 ))
519	elif [[ $numprocs != 0 ]]
520	then
521	(( Memory = memory * numprocs / 1000 ))
522	else
523	(( Memory = memory / 1000 ))
524	fi
525	elif [[ $remote_host = lctit ]]
526	then
527	(( Memory = memory * tasks_per_node / 1000 ))
528	fi
529
530
531	# MEMORY DEMAND IN CASE OF OPENMP-USAGE ON IBM-SYSTEMS
532	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
533	then
534	(( memory = memory * threads_per_task ))
535	fi
536
537
538	# CALCULATE NUMBER OF REQUIRED NODES
539	if (( tasks_per_node != 0 ))
540	then
541	(( nodes = ( numprocs - 1 ) / ( tasks_per_node * threads_per_task ) + 1 ))
542	fi
543
544
545	# CALCULATE NUMBER OF PROCESSES PER NODE
546	(( processes_per_node = tasks_per_node * threads_per_task ))
547
548
549	# CALCULATE NUMBER OF MPI TASKS
550	(( mpi_tasks = numprocs / threads_per_task ))
551
552
553	# SET PORT NUMBER OPTION FOR CALLS OF ssh/scp, subjob AND batch_scp SCRIPTS
554	if [[ "$scp_port" != "" ]]
555	then
556	PORTOPT="-P $scp_port"
557	SSH_PORTOPT="-p $scp_port"
558	fi
559
560
561	# HEADER-OUTPUT
562	if [[ $verify = true ]]
563	then
564	printf "\n\n"
565	printf "#--------------------------------------------------------------# \n"
566	spalte1=SUBJOB;spalte2=$(date)
567	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
568	printf "\| \| \n"
569	printf "\| values of parameters/options: \| \n"
570	spalte1=$(echo local_host$punkte \| cut -c-20)
571	spalte2=$punkte$local_host
572	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
573	spalte1=$(echo remote_host$punkte \| cut -c-20)
574	spalte2=$punkte$remote_host
575	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
576	spalte1=$(echo queue$punkte \| cut -c-20)
577	spalte2=$punkte$queue
578	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
579	spalte1=$(echo memory$punkte \| cut -c-20)
580	spalte2="$punkte$memory mb"
581	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
582	spalte1=$(echo cputime$punkte \| cut -c-20)
583	spalte2="$punkte$cputime sec"
584	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
585	spalte1=$(echo job_name$punkte \| cut -c-20)
586	spalte2="$punkte$job_name"
587	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
588	printf "#--------------------------------------------------------------# \n\n"
589
590
591	# QUERY CHECK
592	antwort="dummy"
593	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
594	do
595	read antwort?" >>> continue (y/n) ? "
596	done
597	if [[ $antwort = n \|\| $antwort = N ]]
598	then
599	locat=verify; exit
600	fi
601	printf "\n"
602	fi
603
604
605
606	# GENERATE RANDOM IDENTIFIER, AND DETERMINE THE JOBNAME ON THE TARGET HOST
607	identifier=$RANDOM
608	job_on_remhost=${job_name}_${identifier}_$local_host
609	job_to_send=job_to_send_$identifier
610	if [[ $delete_dayfile = false ]]
611	then
612	remote_dayfile=${local_host}_${job_name}_result_$identifier
613	local_dayfile=${remote_host}_${job_name}
614	else
615	remote_dayfile=/dev/null
616	fi
617
618
619
620	# GENERATE THE BATCH-JOB SCRIPTS (FOR QUEUEING-SYSTEMS qsub/msub/LoadLeveler)
621	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
622	then
623
624	# GENERAL LOADLEVELER SETTINGS
625	execute_in_shell="#!/bin/ksh"
626	use_shell="# @ shell = /bin/ksh"
627	consumable_memory="ConsumableMemory($memory mb)"
628	class="# @ class = $queue"
629	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
630	network_to_use="# @ network.mpi = sn_all,shared,us"
631	data_limit="# @ data_limit = 1.76gb"
632	image_size="# @ image_size = 50"
633	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
634
635	if [[ $email_notification = none ]]
636	then
637	notify_user=""
638	else
639	notify_user="# @ notify_user = $email_notification"
640	if [[ $delete_dayfile = true ]]
641	then
642	notification='# @ notification = never'
643	fi
644	fi
645
646	if [[ $remote_host = ibmh ]]
647	then
648	data_limit=""
649	network_to_use=""
650	class="# @ class = $queue"
651	environment=""
652	rset="# @ rset = RSET_MCM_AFFINITY"
653	task_affinity="# @ task_affinity = core(1)"
654	elif [[ $remote_host = ibmkisti ]]
655	then
656	network_to_use="# @ network.MPI = sn_all,shared,US"
657	wall_clock_limit="# @ wall_clock_limit = $timestring"
658	if [[ $threads_per_task = 1 ]]
659	then
660	rset="# @ rset = RSET_MCM_AFFINITY"
661	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
662	fi
663	environment=""
664	use_shell=""
665	data_limit=""
666	image_size=""
667	elif [[ $remote_host = ibmku ]]
668	then
669	execute_in_shell="#!/usr/bin/ksh"
670	use_shell="# @ shell = /usr/bin/ksh"
671	consumable_memory=""
672	environment=""
673	network_to_use="# @ network.mpi = sn_all,shared,us"
674	data_limit=""
675	image_size=""
676	elif [[ $remote_host = ibms ]]
677	then
678	network_to_use="# @ network.mpi = csss,shared,us"
679	fi
680
681	cat > $job_to_send << %%END%%
682	$execute_in_shell
683	$use_shell
684
685	# @ job_type = parallel
686	# @ job_name = $job_name
687	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
688	# @ output = $remote_dayfile
689	# @ error = $remote_dayfile
690	$wall_clock_limit
691	$image_size
692	$class
693	$environment
694	$network_to_use
695	$data_limit
696	$rset
697	$mcm_affinity_options
698	$task_affinity
699	$notification
700	$notify_user
701
702	%%END%%
703
704	if (( nodes > 0 ))
705	then
706
707	if [[ $remote_host != ibmkisti ]]
708	then
709
710	cat >> $job_to_send << %%END%%
711	# @ node = $nodes
712	# @ tasks_per_node = $processes_per_node
713	# @ node_usage = $node_usage
714	# @ queue
715
716	%%END%%
717
718	else
719
720	cat >> $job_to_send << %%END%%
721	# @ total_tasks = $mpi_tasks
722	# @ blocking = unlimited
723	# @ queue
724
725	%%END%%
726
727	fi
728
729	else
730
731	cat >> $job_to_send << %%END%%
732	# @ blocking = unlimited
733	# @ total_tasks = $numprocs
734	# @ node_usage = $node_usage
735	# @ queue
736
737	%%END%%
738
739	fi
740
741	# WORKAROUND BECAUSE OF SILLY JOB FILTER ON ibmkisti
742	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
743	then
744	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
745	fi
746
747	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
748	then
749
750	cat > $job_to_send << %%END%%
751	#!/bin/ksh
752
753	# @ job_type = serial
754	# @ node_usage = $node_usage
755	# @ job_name = palm
756	# @ wall_clock_limit = ${timestring},$timestring
757	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
758	# @ output = $remote_dayfile
759	# @ error = $remote_dayfile
760	$class
761	$notification
762
763	# @ queue
764
765	%%END%%
766
767	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
768	then
769
770	if [[ $numprocs != 0 ]]
771	then
772	cat > $job_to_send << %%END%%
773	#!/bin/bash
774	#PBS -N $job_name
775	#PBS -l walltime=$timestring
776	#PBS -l nodes=$nodes:ppn=$processes_per_node
777	#PBS -o $remote_dayfile
778	#PBS -j oe
779	#PBS -q $queue
780
781	$module_calls
782
783	%%END%%
784
785	else
786
787	continue
788
789	fi
790
791	elif [[ $remote_host = lccrayf ]]
792	then
793
794	if [[ $numprocs != 0 ]]
795	then
796	cat > $job_to_send << %%END%%
797	#!/bin/bash -l
798	#SBATCH -J $job_name
799	#SBATCH -t $timestring
800	#SBATCH -N $nodes
801	#SBATCH --ntasks-per-node=$processes_per_node
802	#SBATCH -p $queue
803	#SBATCH -o $remote_dayfile
804	#SBATCH -e $remote_dayfile
805
806	$init_cmds
807	$module_calls
808
809	%%END%%
810
811	else
812	cat > $job_to_send << %%END%%
813	#!/bin/bash -l
814	#SBATCH -J $job_name
815	#SBATCH -t $timestring
816	#SBATCH -l ncpus=1
817	#SBATCH -l pmem=${memory}mb
818	#SBATCH -m abe
819	#SBATCH -o $remote_dayfile
820	#SBATCH -e $remote_dayfile
821
822	$init_cmds
823	$module_calls
824
825	%%END%%
826
827	fi
828
829	elif [[ $remote_host = lcflow ]]
830	then
831	if [ $memory -gt 1800 ]; then
832	use_himem=""
833	else
834	use_himem="#"
835	fi
836	if [[ $numprocs != 0 ]]
837	then
838	pe_set="#$ -pe impi41 $numprocs"
839	else
840	pe_set="#$ -pe impi41 1"
841	fi
842	if [[ $queue = default ]]
843	then
844	queue_set=""
845	else
846	queue_set="#$ -q $queue"
847	fi
848	[[ "$disc_space" = "" ]] && disc_space=50
849
850	cat > $job_to_send << %%END%%
851	#!/bin/bash
852	#$ -S /bin/bash
853	#$ -N $job_name
854	#$ -cwd
855	#$ -l h_rt=$timestring
856	#$ -l h_vmem=${memory}M
857	#$ -o $remote_dayfile
858	#$ -j y
859	$pe_set
860	#$ -R y
861	${use_himem}#$ -l highmem=true
862	#$ -l h_fsize=${disc_space}G
863	$queue_set
864
865	%%END%%
866
867	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
868	then
869
870	if [[ $numprocs != 0 ]]
871	then
872	cat > $job_to_send << %%END%%
873	#!/bin/ksh
874	#PBS -N $job_name
875	#PBS -l walltime=$timestring
876	#PBS -l ncpus=$numprocs
877	#PBS -l pmem=${memory}mb
878	#PBS -o $remote_dayfile
879	#PBS -l nodes=$nodes:ppn=${processes_per_node}
880	#PBS -j oe
881
882	mpd &
883
884	%%END%%
885
886	else
887	cat > $job_to_send << %%END%%
888	#!/bin/ksh
889	#PBS -N $job_name
890	#PBS -l walltime=$timestring
891	#PBS -l ncpus=1
892	#PBS -l pmem=${memory}mb
893	#PBS -o $remote_dayfile
894	#PBS -j oe
895
896	%%END%%
897
898	fi
899
900	elif [[ $remote_host = lckiaps ]]
901	then
902
903	if [[ $numprocs != 0 ]]
904	then
905	cat > $job_to_send << %%END%%
906	#!/bin/ksh
907	#PBS -N $job_name
908	#PBS -l walltime=$timestring
909	#PBS -l select=1:ncpus=$numprocs
910	#PBS -l pmem=${memory}mb
911	#PBS -q $queue
912	#PBS -o $remote_dayfile
913	#PBS -j oe
914	#PBS -V
915
916	%%END%%
917
918	else
919	cat > $job_to_send << %%END%%
920	#!/bin/ksh
921	#PBS -N $job_name
922	#PBS -l walltime=$timestring
923	#PBS -l ncpus=1
924	#PBS -l pmem=${memory}mb
925	#PBS -o $remote_dayfile
926	#PBS -j oe
927
928	%%END%%
929
930	fi
931
932	elif [[ $remote_host = lcyon ]]
933	then
934
935	if [[ $numprocs != 0 ]]
936	then
937	cat > $job_to_send << %%END%%
938	#!/bin/ksh
939	#PBS -N $job_name
940	#PBS -l walltime=$timestring
941	#PBS -l ncpus=$numprocs
942	#PBS -l pmem=${memory}mb
943	#PBS -o $remote_dayfile
944	#PBS -j oe
945
946	%%END%%
947
948	else
949	cat > $job_to_send << %%END%%
950	#!/bin/ksh
951	#PBS -N $job_name
952	#PBS -l walltime=$timestring
953	#PBS -l ncpus=1
954	#PBS -l pmem=${memory}mb
955	#PBS -o $remote_dayfile
956	#PBS -j oe
957
958	%%END%%
959
960	fi
961
962	elif [[ $remote_host = lcxe6 ]]
963	then
964
965	if [[ $numprocs != 0 ]]
966	then
967	cat > $job_to_send << %%END%%
968	#!/bin/ksh
969	#PBS -S /bin/ksh
970	#PBS -N $job_name
971	#PBS -A $project_account
972	#PBS -j oe
973	#PBS -l walltime=$timestring
974	#PBS -l mppwidth=${numprocs}
975	#PBS -l mppnppn=${processes_per_node}
976	#PBS -m abe
977	#PBS -o $remote_dayfile
978	$email_directive
979
980	$init_cmds
981	$module_calls
982
983	%%END%%
984
985	else
986	cat > $job_to_send << %%END%%
987	#!/bin/ksh
988	#PBS -S /bin/ksh
989	#PBS -N $job_name
990	#PBS -A $project_account
991	#PBS -j oe
992	#PBS -l walltime=$timestring
993	#PBS -l ncpus=1
994	#PBS -l pmem=${memory}mb
995	#PBS -m abe
996	$email_directive
997	#PBS -o $remote_dayfile
998
999	$init_cmds
1000	$module_calls
1001
1002	%%END%%
1003
1004	fi
1005
1006	elif [[ $remote_host = lckyoto ]]
1007	then
1008
1009	cat > $job_to_send << %%END%%
1010	#!/bin/ksh
1011	# @\$-o $remote_dayfile
1012	# @\$-eo -oi
1013	# @\$-lP 16
1014	# @\$-lp 1
1015	# @\$-lm 28gb -llm unlimited -ls unlimited
1016	# @\$-q $queue
1017	# @\$-Pvn abs_pack
1018	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
1019	#. /thin/local/etc/setprofile/intel-11.0.sh
1020	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
1021	. ~/.myprofile
1022	#. /home2/t/t51254/palm/current_version/myprofile
1023	#. /thin/apps/pgi/mpi.sh
1024	#
1025	env
1026	#
1027	set -x
1028
1029	%%END%%
1030
1031	elif [[ $remote_host = lcxt5m ]]
1032	then
1033
1034	if [[ $numprocs != 0 ]]
1035	then
1036	cat > $job_to_send << %%END%%
1037	#!/bin/ksh
1038	#PBS -S /bin/ksh
1039	#PBS -N $job_name
1040	#PBS -j oe
1041	#PBS -l walltime=$timestring
1042	#PBS -l mppwidth=${numprocs}
1043	#PBS -l mppnppn=${processes_per_node}
1044	#PBS -m abe
1045	#PBS -o $remote_dayfile
1046
1047	$init_cmds
1048	$module_calls
1049
1050	%%END%%
1051
1052	else
1053	cat > $job_to_send << %%END%%
1054	#!/bin/ksh
1055	#PBS -S /bin/ksh
1056	#PBS -N $job_name
1057	#PBS -j oe
1058	#PBS -l walltime=$timestring
1059	#PBS -l ncpus=1
1060	#PBS -l pmem=${memory}mb
1061	#PBS -m abe
1062	#PBS -o $remote_dayfile
1063
1064	$init_cmds
1065	$module_calls
1066
1067	%%END%%
1068
1069	fi
1070
1071	elif [[ $remote_host = lckyuh ]]
1072	then
1073	cat > $job_to_send << %%END%%
1074	#!/bin/bash
1075	#PJM -L "rscgrp=$queue"
1076	#PJM -L "node=$nodes"
1077	#PJM --mpi "proc=$numprocs"
1078	#PJM -L "elapse=$timestring"
1079	#PJM -o $remote_dayfile
1080	#PJM -j
1081	#PJM -X
1082	#PJM --no-stging
1083
1084	export LANG=en_US.UTF-8
1085	%%END%%
1086
1087	elif [[ $remote_host = lckyut ]]
1088	then
1089	cat > $job_to_send << %%END%%
1090	#!/bin/bash
1091	#PJM -L "rscgrp=$queue"
1092	#PJM -L "vnode=$numprocs"
1093	#PJM -L "vnode-core=1"
1094	#PJM -L "elapse=$timestring"
1095	#PJM --mpi proc=$numprocs
1096	#PJM -o $remote_dayfile
1097	#PJM -j
1098	#PJM -X
1099	#PJM --no-stging
1100
1101	export LANG=en_US.UTF-8
1102	%%END%%
1103
1104	elif [[ $remote_host = nech ]]
1105	then
1106
1107	if (( nodes > 1 ))
1108	then
1109	cat > $job_to_send << %%END%%
1110	#!/bin/ksh
1111	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1112	#PBS -l ${qsubmem}=${Memory}gb
1113	#PBS -b $nodes
1114	#PBS -o $remote_dayfile
1115	#PBS -N palm
1116	#PBS -j o
1117	#PBS -T mpisx
1118
1119	%%END%%
1120
1121	elif [[ $numprocs != 0 ]]
1122	then
1123	cat > $job_to_send << %%END%%
1124	#!/bin/ksh
1125	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1126	#PBS -l ${qsubmem}=${Memory}gb
1127	#PBS -o $remote_dayfile
1128	#PBS -N palm
1129	#PBS -j o
1130
1131	%%END%%
1132
1133	else
1134	cat > $job_to_send << %%END%%
1135	#!/bin/ksh
1136	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1137	#PBS -o $remote_dayfile
1138	#PBS -j o
1139
1140	%%END%%
1141
1142	fi
1143
1144	elif [[ $remote_host = lctit ]]
1145	then
1146	cat > $job_to_send << %%END%%
1147	#!/bin/ksh
1148	$init_cmds
1149	$module_calls
1150
1151	%%END%%
1152
1153	# SET OPTIONS FOR SUBMIT-COMMAND
1154	if [[ $tasks_per_node != $processes_per_node ]]
1155	then
1156	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -et 1 -q $queue "
1157	else
1158	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -et 1 -q $queue "
1159	fi
1160
1161	else
1162
1163	cat > $job_to_send << %%END%%
1164	# @\$-q ${queue}
1165	# @\$-l${qsubtime} $timestring
1166	# @\$-l${qsubmem} ${memory}mb
1167	# @\$-o $remote_dayfile
1168	# @\$-eo
1169
1170	%%END%%
1171
1172	fi
1173
1174
1175	# IN CASE OF JOBS EXECUTING ON REMOTE-HOSTS, THE TRANSFER OF THE DAYFILES
1176	# TO THE LOCAL HOSTS WILL BE INITIATED BY TRAP ON EXIT
1177	# NO TRANSFER POSSIBLE ON IBM IN SEOUL
1178	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1179	then
1180	echo "set +vx" >> $job_to_send
1181	echo "trap '" >> $job_to_send
1182	echo "set +vx" >> $job_to_send
1183	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $remote_host = lccrayb \|\| $remote_host = lccrayh \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lcflow \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* \|\| $remote_host = lcxe6 ]]
1184	then
1185	if [[ $remote_host = ibmh ]]
1186	then
1187	return_queue=c1
1188	elif [[ $remote_host = ibmkisti ]]
1189	then
1190	return_queue=class.1-2
1191	elif [[ $remote_host = ibmku ]]
1192	then
1193	return_queue=sdbg2
1194	elif [[ $remote_host = ibms ]]
1195	then
1196	return_queue=p_normal
1197	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1198	then
1199	return_queue=dataq
1200	elif [[ $remote_host = lcxe6 ]]
1201	then
1202	return_queue=debug
1203	elif [[ $remote_host = lckiaps ]]
1204	then
1205	return_queue=express
1206	elif [[ $remote_host = lckyuh ]]
1207	then
1208	return_queue=cx-single
1209	elif [[ $remote_host = lckyut ]]
1210	then
1211	return_queue=cx-single
1212	else
1213	return_queue=unknown
1214	fi
1215
1216	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1217	then
1218
1219	if [[ $remote_host = ibmku ]]
1220	then
1221	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1222	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1223	else
1224	echo "echo \"#!/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1225	fi
1226	echo "echo \"# @ job_type = serial\" >> scpjob.$identifier" >> $job_to_send
1227	echo "echo \"# @ job_name = transfer\" >> scpjob.$identifier" >> $job_to_send
1228	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$identifier" >> $job_to_send
1229	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$identifier " >> $job_to_send
1230	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1231	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1232	if [[ $host != "ibmh" ]]
1233	then
1234	echo "echo \"# @ class = $return_queue\" >> scpjob.$identifier" >> $job_to_send
1235	fi
1236	echo "echo \"# @ image_size = 10\" >> scpjob.$identifier" >> $job_to_send
1237	echo "echo \"# @ notification = never\" >> scpjob.$identifier" >> $job_to_send
1238
1239	echo "echo \"# @ queue\" >> scpjob.$identifier" >> $job_to_send
1240	echo "echo \" \" >> scpjob.$identifier" >> $job_to_send
1241
1242	echo "echo \"set -x\" >> scpjob.$identifier" >> $job_to_send
1243	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$identifier" >> $job_to_send
1244	if [[ $remote_host = ibmku ]]
1245	then
1246	echo "echo \"rm scpjob.$identifier\" >> scpjob.$identifier" >> $job_to_send
1247	fi
1248	echo "echo \"exit\" >> scpjob.$identifier" >> $job_to_send
1249
1250	elif [[ $remote_host = nech ]]
1251	then
1252	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1253	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1254	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1255	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1256	echo "#PBS -j o" >> $job_to_send
1257	echo " " >> $job_to_send
1258	echo "set -x" >> $job_to_send
1259	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1260	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1261	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1262	echo "%%END%%" >> $job_to_send
1263
1264	elif [[ $remote_host = lckyuh ]]
1265	then
1266	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1267	echo "#!/bin/bash" >> $job_to_send
1268	echo "#PJM -L \"node=1\"" >> $job_to_send
1269	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1270	echo "#PJM --no-stging" >> $job_to_send
1271	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1272	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1273	echo "#PJM -j" >> $job_to_send
1274	echo " " >> $job_to_send
1275	echo "export LANG=en_US.UTF-8" >> $job_to_send
1276	echo "set -x" >> $job_to_send
1277	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1278	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1279	echo "%%END%%" >> $job_to_send
1280
1281	elif [[ $remote_host = lckyut ]]
1282	then
1283	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1284	echo "#!/bin/bash" >> $job_to_send
1285	echo "#PJM -L \"vnode=1\"" >> $job_to_send
1286	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1287	echo "#PJM --no-stging" >> $job_to_send
1288	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1289	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1290	echo "#PJM -j" >> $job_to_send
1291	echo " " >> $job_to_send
1292	echo "export LANG=en_US.UTF-8" >> $job_to_send
1293	echo "set -x" >> $job_to_send
1294	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1295	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1296	echo "%%END%%" >> $job_to_send
1297
1298	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1299	then
1300	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1301	echo "#!/bin/bash" >> $job_to_send
1302	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1303	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1304	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1305	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1306	echo "#PBS -j oe" >> $job_to_send
1307	echo " " >> $job_to_send
1308	echo "set -x" >> $job_to_send
1309	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1310	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1311	echo "%%END%%" >> $job_to_send
1312
1313	elif [[ $remote_host = lcflow ]]
1314	then
1315	echo "cat > scpjob.${identifier}.tmp << %%END%%" >> $job_to_send
1316	echo "#!/bin/bash" >> $job_to_send
1317	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
1318	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
1319	echo "SGEPREFIX -cwd" >> $job_to_send
1320	echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
1321	echo "SGEPREFIX -l h_vmem=500M" >> $job_to_send
1322	echo "SGEPREFIX -l excl_flow=false" >> $job_to_send
1323	echo "SGEPREFIX -j y" >> $job_to_send
1324	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$identifier" >> $job_to_send
1325	echo " " >> $job_to_send
1326	echo "set -x" >> $job_to_send
1327	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
1328	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
1329	echo "" >> $job_to_send
1330	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1331	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1332	echo "rm -f scpjob.${identifier}" >> $job_to_send
1333	echo "%%END%%" >> $job_to_send
1334	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${identifier}.tmp > scpjob.${identifier}" >> $job_to_send
1335	echo "rm -f scpjob.${identifier}.tmp" >> $job_to_send
1336	elif [[ $remote_host = lcxe6 ]]
1337	then
1338	echo "cat > scpjob.${identifier} << %%END%%" >> $job_to_send
1339	echo "#!/bin/ksh" >> $job_to_send
1340	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1341	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1342	echo "#PBS -A $project_account" >> $job_to_send
1343	echo "#PBS -l mppwidth=1" >> $job_to_send
1344	echo "#PBS -l mppnppn=1" >> $job_to_send
1345	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1346	echo "#PBS -j oe" >> $job_to_send
1347	echo " " >> $job_to_send
1348	echo "set -x" >> $job_to_send
1349	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1350	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1351	echo "%%END%%" >> $job_to_send
1352	else
1353
1354	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1355	echo "# @\\\$-q $return_queue" >> $job_to_send
1356	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1357	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1358	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1359	then
1360	echo "# @\$-l mpp_p=0" >> $job_to_send
1361	fi
1362	echo '# @\$-lF 10mb' >> $job_to_send
1363	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1364	echo '# @\\\$-eo' >> $job_to_send
1365	echo " " >> $job_to_send
1366	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1367	then
1368	echo "set +vx" >> $job_to_send
1369	echo ". .profile" >> $job_to_send
1370	fi
1371	echo "set -x" >> $job_to_send
1372	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1373	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1374	echo "%%END%%" >> $job_to_send
1375	fi
1376
1377	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1378	then
1379	echo "llsubmit scpjob.$identifier" >> $job_to_send
1380	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1381	then
1382	echo "msub -q $return_queue scpjob.$identifier" >> $job_to_send
1383	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1384	then
1385	echo "qsub -J n scpjob.$identifier" >> $job_to_send
1386	elif [[ $remote_host = t3es ]]
1387	then
1388	echo "qsub -J n -s /bin/ksh scpjob.$identifier" >> $job_to_send
1389	elif [[ $remote_host = lckiaps ]]
1390	then
1391	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1392	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"$submcom ${job_catalog}/scpjob.$identifier\" " >> $job_to_send
1393	echo "rm ${job_catalog}/scpjob.$identifier" >> $job_to_send
1394	elif [[ $remote_host = lckyu* ]]
1395	then
1396	echo "scp $PORTOPT scpjob.$identifier ${remote_username}@${remote_address}:job_queue" >> $job_to_send
1397	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"cd job_queue; $submcom scpjob.$identifier; rm scpjob.$identifier\" " >> $job_to_send
1398	elif [[ $remote_host = lcflow ]]
1399	then
1400	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1401	echo "/usr/bin/ssh ${remote_username}@${remote_address} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$identifier\" " >> $job_to_send
1402	else
1403	echo "$submcom scpjob.$identifier" >> $job_to_send
1404	fi
1405	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
1406	then
1407	echo "rm scpjob.$identifier" >> $job_to_send
1408	fi
1409	if [[ $remote_host = nech ]]
1410	then
1411	echo "cd -" >> $job_to_send
1412	fi
1413	else
1414	# echo "ftpcopy -d $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1415	# ??? funktioniert das ÃŒberhaupt noch ???
1416	echo "nohup ftpcopy -d -w 15 $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1417	fi
1418	echo "set -x" >> $job_to_send
1419	echo " ' exit" >> $job_to_send
1420	echo "set -x" >> $job_to_send
1421	fi
1422
1423
1424
1425	# APPEND THE JOB-FILE (CREATE BY mrun) TO THE JOB-DIRECTIVES GENERATED ABOVE
1426	cat $file_to_send >> $job_to_send
1427
1428	if [[ $remote_host = ibm ]]
1429	then
1430	echo " " >> $job_to_send
1431	echo "exit" >> $job_to_send
1432	fi
1433
1434	# REMOVE JOB-FILE
1435	if [[ $remote_host = lctit \|\| $remote_host = ibmku \|\| $remote_host = lcflow ]]
1436	then
1437	echo " " >> $job_to_send
1438	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1439	fi
1440
1441
1442	# TRANSFER JOB TO THE TARGET HOST (JOB-DIRECTORY)
1443	if [[ $no_submit = false ]]
1444	then
1445	if [[ $remote_host != $local_host ]]
1446	then
1447	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1448	if [[ $remote_host = ibms ]] # ssh on ibms cannot handle "~/"
1449	then
1450	job_catalog_save=$job_catalog
1451	job_catalog=job_queue
1452	elif [[ $remote_host = nech ]]
1453	then
1454	job_catalog_save=$job_catalog
1455	job_catalog=/hpf/b/${remote_user}/job_queue
1456	fi
1457	if [[ $remote_host = nech ]]
1458	then
1459	# FILES CAN ONLY BE TRANSFERED VIA DKRZ'S ARCHIVE-SERVER
1460	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1461	else
1462	scp $PORTOPT $job_to_send ${remote_user}@${remote_address}:${job_catalog}/$job_on_remhost
1463	fi
1464	if [[ $? = 1 ]]
1465	then
1466	locat=scp; exit
1467	fi
1468	if [[ $remote_host = ibms ]]
1469	then
1470	job_catalog=$job_catalog_save
1471	fi
1472	[[ $verify = true ]] && printf "\n >>> finished\n"
1473	else
1474	eval job_catalog=$job_catalog
1475	cp $job_to_send ${job_catalog}/$job_on_remhost
1476	fi
1477
1478
1479
1480	# START NQS- / LOADLEVELER-JOB
1481	if [[ $remote_host != $local_host ]]
1482	then
1483	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1484
1485	if [[ $remote_host = ibmku ]]
1486	then
1487	ssh $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1488	elif [[ $remote_host = lcflow ]]
1489	then
1490	/usr/bin/ssh $SSH_PORTOPT $remote_address -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
1491	else
1492	ssh $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1493	fi
1494
1495	[[ $verify = true ]] && printf " >>> o.k.\n"
1496	else
1497	cd $job_catalog
1498	if [[ $(echo $local_host \| cut -c1-3) = ibm \|\| $(echo $local_host \| cut -c1-6) = lccray ]]
1499	then
1500	eval $submcom $job_on_remhost
1501	elif [[ $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyu* ]]
1502	then
1503	chmod u+x $job_on_remhost
1504	eval $submcom $job_on_remhost
1505	elif [[ $local_host = nech ]]
1506	then
1507	if [[ $queue = default ]]
1508	then
1509	eval $submcom $job_on_remhost
1510	else
1511	eval $submcom -q $queue $job_on_remhost
1512	fi
1513	else
1514	qsub $job_on_remhost
1515	fi
1516
1517	# JOBFILE MUST NOT BE DELETED ON lctit/ibmku/lcflow. THIS WILL BE DONE
1518	# AT THE END OF THE JOB
1519	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
1520	then
1521	rm $job_on_remhost
1522	fi
1523	cd - > /dev/null
1524	fi
1525	fi
1526
1527
1528
1529	# FINAL ACTIONS
1530	if [[ $no_submit = false ]]
1531	then
1532	rm -f $job_to_send
1533	fi
1534	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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