Changeset 1202 for palm/trunk/SCRIPTS/subjob

Timestamp:

Jul 10, 2013 4:22:07 PM (11 years ago)

Author:

witha

Message:

script adjustments for Forwind cluster (lcflow)

File:

• palm/trunk/SCRIPTS/subjob (modified) (6 diffs)

palm/trunk/SCRIPTS/subjob

@@ -23 +23 @@
 # Current revisions:
 # ------------------
-# 
+# adjustments for Forwind cluster (lcflow)
 #
 # Former revisions:
@@ -837 +837 @@
  elif [[ $remote_host = lcflow ]]
  then
-    if [ $memory -gt 1900 ]; then
+    if [ $memory -gt 1800 ]; then
       use_himem=""
     else
@@ -844 +844 @@
     if [[ $numprocs != 0 ]]
     then
-      pe_set="#$ -pe impi $numprocs"
-    else
-      pe_set="#$ -pe impi 1"
+      pe_set="#$ -pe impi41 $numprocs"
+    else
+      pe_set="#$ -pe impi41 1"
     fi
     if [[ $queue = default ]]
@@ -1454 +1454 @@
           echo "SGEPREFIX -cwd"                                          >>  $job_to_send
           echo "SGEPREFIX -l h_rt=01:00:00"                              >>  $job_to_send
-          echo "SGEPREFIX -l h_vmem=100M"                                >>  $job_to_send
+          echo "SGEPREFIX -l h_vmem=500M"                                >>  $job_to_send
+          echo "SGEPREFIX -l excl_flow=false"                            >>  $job_to_send
           echo "SGEPREFIX -j y"                                          >>  $job_to_send
           echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$kennung"  >>  $job_to_send 
@@ -1521 +1522 @@
        then
           echo "mv  scpjob.$kennung  $job_catalog"           >>  $job_to_send
-          echo "ssh ${remote_username}@${remote_addres}  \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$kennung\" "  >>  $job_to_send
+          echo "/usr/bin/ssh ${remote_username}@${remote_addres}  \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$kennung\" "  >>  $job_to_send
        else
           echo "$submcom  scpjob.$kennung"      >>  $job_to_send
@@ -1626 +1627 @@
        elif [[ $remote_host = lcflow ]]
        then
-          ssh  $SSH_PORTOPT $remote_addres  -l $remote_user  "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
+          /usr/bin/ssh  $SSH_PORTOPT $remote_addres  -l $remote_user  "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
        else
           ssh  $SSH_PORTOPT $remote_addres  -l $remote_user  "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"