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source: palm/trunk/SCRIPTS/mrun @ 677

Last change on this file since 677 was 670, checked in by gryschka, 14 years ago
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Rev	Line
[71]	1	#!/bin/ksh
[503]	2	# mrun - script for running PALM jobs
[169]	3	# $Id: mrun 670 2010-12-26 19:11:05Z suehring $
[1]	4
[503]	5	# Procedure for interactive/batch PALM runs (initial runs and automatic
	6	# restart runs)
[1]	7
[503]	8	# Last changes:
[1]	9	# 03/03/94 - Siggi - Entwicklungsbeginn
	10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
	11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
	12	# zelne Variable exportiert. Dies ist noetig, weil an-
	13	# sonsten irgendein Speicher ueberlaeuft und von mrun
	14	# aufgerufene Programme (z.B. stageout) mit Fehlern
	15	# abbrechen (too many arguments)
	16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
	17	# defaultmaessig im RRZN-Profile eingeschaltet
	18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
	19	# wegfallen
	20	# 25/04/00 - Siggi - Version 1.5
	21	# remote_addres und remote_user in return_addres bzw.
	22	# return_username umbenannt, return_username wird dem
	23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
	24	# Neue Variable remote_username, die beim interaktiven
	25	# mrun-Aufruf zwingend ueber die neue Option -u oder
	26	# in der Konfigurationsdatei angegeben werden muss.
	27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
	28	# Version 1.7
	29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
	30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
	31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
	32	# zu bestimmen; Praeprozessoroptionen haben nun alle
	33	# die Form -Dtext=text, weil auf IBM sonst text durch
	34	# die leere Zeichenkette ersetzt wird
	35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
	36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
	37	# (-D$OMP=OMP) in order to avoid problems with
	38	# OMP_NUM_THREADS
	39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
	40	# tar files, one for each node used
	41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
	42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
	43	# 17/01/05 - Siggi - job for data transfer to local machine now within
	44	# job class c1 (HLRN)
	45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
	46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
	47	# base filename and cycle number
	48	# 16/02/05 - Gerald - hababai validated
	49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
	50	# 29/03/05 - Marcus - berni*-en0 validated
	51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
	52	# 24/04/05 - Siggi - netcdf support on lcmuk
	53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
	54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
	55	# number) can now be used within interactive runs
	56	# 12/05/05 - Siggi - netcdf support on ibm
	57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
	58	# 18/05/05 - Siggi - netcdf support on nec
	59	# 24/05/05 - Siggi - netcdf support on ibms
	60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
	61	# to 30 seconds
	62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
	63	# PATH is temporarily set)
	64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
	65	# caused warnings in the job protocol
	66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
	67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
	68	# removed
	69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
	70	# realized by file attribute trpe
	71	# 28/10/05 - Siggi - if existing, the file extension is output in case
	72	# of missing input file - no job abort in case of
	73	# missing input files with file extensions
	74	# (preliminary solution)
	75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
	76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
	77	# 07/12/05 - Siggi - gallego and elephanta admitted
	78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
	79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
	80	# 20/01/06 - Siggi - cpp directive for ibmy
	81	# 09/02/06 - Siggi - ibmy admitted for batch mode
	82	# 13/04/06 - Siggi - ostria admitted
	83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
	84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
	85	# optimization of OpenMP runs (option stacksize is
	86	# necessary for large gridpoint numbers because
	87	# otherwise a segmentation fault occurs)
	88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
	89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
	90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
	91	# 20/09/06 - Marcus - add DVRP library on nech
	92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
	93	# on local NAMELIST file ENVPAR
	94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
	95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
	96	# 06/02/07 - Siggi - add DVRP library on lcmuk
	97	# 07/02/07 - Siggi - revision of source code handling, source code is
	98	# now expected in directory given by source_path and
	99	# not in the current working directory, source code
	100	# files provided in add_source_path are allways
	101	# compiled, source code to be compiled is allways
	102	# sampled in SOURCES_FOR_RUN_$fname which is a
	103	# subdirectory of the current working directory,
[5]	104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
[1]	105	# adapted for RIAM (neck)
[5]	106	# bugfix for cycle number of output file (extout)
	107	# all hpmuk-related code removed
[14]	108	# 14/02/07 - Siggi - dvrp support for neck added
[21]	109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
[26]	110	# mrun_path replaced by PALM_BIN,
	111	# all machines are calling interpret_config.x
[66]	112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
	113	# output
[69]	114	# 16/03/07 - Siggi - adjustments for lctit
[78]	115	# 29/03/07 - Siggi - global revision transfered to batch job by new
	116	# option -G
[82]	117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
	118	# + netcdf/dvrp-options are read from configuration
	119	# file, host identifier (local_host) is read from
	120	# config file, code related to ftp filetransfer
	121	# removed (incl. option -f)
[97]	122	# 19/06/07 - Siggi - time limit for cdata jobs increased
[102]	123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
	124	# if new option -Y (coupling) is given,
	125	# output of executables to aout_output removed,
	126	# messages are immediately written to stdout instead
[108]	127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
	128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
	129	# variables out to the nodes in coupled mode -disabled-
	130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
[109]	131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
	132	# environment variables out to the nodes in coupled mode
[118]	133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
	134	# suggestions
[122]	135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
	136	# argument -g group_number, admit all sla* node_usage
	137	# queues
[129]	138	# 30/10/07 - Marcus - further adjustments for queues on lctit
[149]	139	# 14/02/08 - Bjoern - link of restart files with long file name possible
	140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
	141	# true, mrun tries "ln -f" on local output and resorts
	142	# to "cp" or "cp -r" on error
[164]	143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
	144	# which allows the user to choose his own job catalog
	145	# by setting job_catalog in the configuration file
	146	# (default is ~/job_queue),
[172]	147	# workaround for mpiexec with -env option,
[164]	148	# adjustments for lcxt4 (Bergen Center for Computational
	149	# Science)
[183]	150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
	151	# true, mrun tries "ln -f" on local input and resorts
	152	# to "cp" or "cp -r" on error
[180]	153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
[179]	154	# 14/07/08 - Siggi - adjustments for lcsgih
[188]	155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
[204]	156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
[210]	157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
	158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
	159	# argument
[211]	160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
	161	# file
	162	# 11/11/08 - Siggi - rules for using user code files changed: user
	163	# code splitted into one file per subroutine,
	164	# user can provide his/her own makefile, only
	165	# default source-code filenames are allowed
[215]	166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
[221]	167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
	168	# with environment variable mpilib
[223]	169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
	170	# using environment variable totalview
[246]	171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
	172	# interactive runs
[253]	173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
[260]	174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
	175	# dvr streaming server is automatically started using
	176	# new variable dvr_server and a configuration file
	177	# .dvrserver.config,
[261]	178	# processing of dvr output files using new script
	179	# process_dvr_output implemented, in order to make
	180	# dvr application more user friendly
[265]	181	# 20/03/09 - Marcus - update of n1ge command for lctit
[291]	182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
	183	# to be followed by a coupled atmosphere-ocean run
[343]	184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
	185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
[352]	186	# 08/07/09 - Siggi - default value for email_notification is none,
	187	# option -e added to subjob
[359]	188	# 19/08/09 - Marcus - MPI debug option
[362]	189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
[367]	190	# 25/08/09 - BjornM - adpated for lck
[369]	191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
[372]	192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
[397]	193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
	194	# switches on archiving, archiving on SGI-ICE enabled
[416]	195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
	196	# adjustment for special1q
	197	# 18/12/09 - Carolin- modification of archiving (permq)
[440]	198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
[475]	199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
	200	# implemented
[493]	201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
	202	# file (modules)
[503]	203	# 02/03/10 - Siggi - for each block in the configuration file, separate
	204	# utility programs are used, combine_plot_fields is
	205	# directly called and must not be given by an output
	206	# command in the configuration file any more
[540]	207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
	208	# lcsgih/lcsgib is done using the names
	209	# hicegate0/bicegate0 instead of the IP addresses
[544]	210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
[555]	211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
[622]	212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
	213	# has now argument threads_per_task
	214	# adjustments for Kyushu Univ. (lcrte, ibmku)
[635]	215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
	216	# institute of technology (lctit)
[669]	217	# 23/12/10 - Micha - different number of processors in ocean and atmosphere
	218	# is now allowed
[437]	219
	220
[1]	221
	222	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	223
	224	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	225	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	226	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	227
	228	AddFilenames=""
	229	additional_conditions=""
	230	add_source_path=""
	231	afname=""
	232	archive_save=true
	233	archive_system=none
	234	compiler_name=""
	235	cond1=""
	236	cond2=""
	237	config_file=.mrun.config
[206]	238	coupled_dist=""
	239	coupled_mode="mpi1"
[1]	240	cpp_opts=""
[82]	241	cpp_options=""
[1]	242	cpumax=0
	243	cpurest=0
	244	delete_temporary_catalog=true
	245	do_batch=false
	246	do_compile=true
	247	do_remote=false
	248	do_stagein=true
	249	do_stageout=true
	250	do_trace=false
[352]	251	email_notification="none"
[1]	252	exclude=""
	253	executable=""
	254	execution_error=false
[67]	255	fimm=false
[1]	256	fname=test
	257	fromhost=""
[78]	258	global_revision=""
[122]	259	group_number=none
[1]	260	host=""
	261	host_file=""
	262	hp=""
	263	ignore_archive_error=false
	264	input_list=""
	265	interpreted_config_file=""
[164]	266	job_catalog="~/job_queue"
[1]	267	job_on_file=""
	268	keep_data_from_previous_run=false
[183]	269	link_local_input=false
[149]	270	link_local_output=false
[1]	271	localhost_realname=$(hostname)
	272	local_compile=false
[260]	273	local_dvrserver_running=.FALSE.
[1]	274	locat=normal
	275	mainprog=""
	276	makefile=""
	277	mc=$0
	278	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	279	do
	280	mc=`echo $mc \| cut -f2- -d"/"`
	281	done
[493]	282	module_calls=""
[1]	283	mrun_script_name=$mc
[82]	284	netcdf_inc=""
	285	netcdf_lib=""
[1]	286	netcdf_support=false
	287	node_usage=default
	288	numprocs=""
[206]	289	numprocs_atmos=0
	290	numprocs_ocean=0
[1]	291	OOPT=""
	292	openmp=false
	293	output_list=""
	294	package_list=""
	295	punkte="..........................................................."
	296	queue=none
	297	read_from_config=""
[5]	298	restart_run=false
[622]	299	if [[ `hostname` = rte10 ]]
[1]	300	then
[622]	301	return_addres=133.5.185.60
	302	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
	303	else
	304	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	305	fi
	306	return_password=""
	307	return_username=$LOGNAME
	308	remotecall=false
	309	remote_username=""
[102]	310	run_coupled_model=false
[1]	311	run_mode=""
	312	scirocco=false
[397]	313	store_on_archive_system=false
[1]	314	striche=" ----------------------------------------------------------------------------"
	315	silent=false
	316	source_list=""
	317	source_path=SOURCE
	318	tasks_per_node=""
	319	threads_per_task=1
	320	tmpcreate=false
	321	tmp_data_catalog=""
	322	transfer_problems=false
	323	usern=$LOGNAME
[377]	324	use_openmp=false
[1]	325	working_directory=`pwd`
	326	TOPT=""
	327	XOPT=""
	328	zeit=$( date \| cut -c 12-19 )
	329
	330	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	331	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	332
[66]	333	typeset -R30 calltime
[1]	334	typeset -L20 spalte1
	335	typeset -L40 spalte2
	336	typeset -L60 spalte3
	337	typeset -L35 string1=`date`
	338	typeset -L12 string2=$usern
	339	typeset -L12 string3=$localhost_realname
	340	typeset -L12 string4
	341	typeset -L12 string5
[201]	342	typeset -L30 version="MRUN 2.0 Rev$Rev: 670 $"
[1]	343
	344
	345
	346	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	347	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	348
	349	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	350	# EXPORTIERT WERDEN
	351	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	352	export group_number input_list memory numprocs output_list queue run_mode
[1]	353
	354
	355
	356	# FEHLERBEHANDLUNG
	357	# BEI EXIT:
[83]	358	trap 'rm -rf $working_directory/tmp_mrun
[69]	359	if [[ $locat != localhost ]]
[1]	360	then
[22]	361	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	362	# then
	363	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	364	#MRUN-calls on $localhost
	365	#
	366	#date and time user localhost remotehost termination mrun-command
	367	#--------------------------------------------------------------------------------------------------------------------
	368	#%STATEND%
	369	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	370	# fi
	371	#
	372	# # EINTRAG IN DIE STATISTIK-DATEI
	373	# string4=$host
	374	# string5=$locat
	375	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	376	# then
	377	# if [[ $do_batch = true ]]
	378	# then
	379	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	380	# else
	381	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	382	# fi
	383	# fi
[69]	384	echo " " > /dev/null
[1]	385	fi
	386
	387	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	388	then
	389
	390	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	391	(( i = 0 ))
	392	while (( i < iec ))
	393	do
	394	(( i = i + 1 ))
	395	printf "\n *** Execution of ERROR-command:\n"
	396	printf " >>> ${err_command[$i]}\n"
	397	eval ${err_command[$i]}
	398	done
	399	if [[ -n $interpreted_config_file ]] then
	400	rm -rf $interpreted_config_file
	401	fi
[71]	402	if [[ -n .mrun_environment ]] then
	403	rm -rf .mrun_environment
	404	fi
[1]	405	if [[ $tmpcreate = true ]]
	406	then
	407	printf "\n *** Contents of \"$TEMPDIR\":\n"
	408	ls -al; cd
	409	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	410	fi
[260]	411	if [[ "$dvrserver_id" != "" ]]
	412	then
	413	echo "+++ killing dvrserver_id=$dvrserver_id"
	414	kill $dvrserver_id
	415	fi
[1]	416	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	417	then
	418	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	419	fi
	420	printf "\n\n+++ MRUN killed \n\n"
	421	elif [[ $locat != control_c ]]
	422	then
	423	printf "\n\n --> all actions finished\n\n"
	424	printf " Bye, bye $usern !!\n\n"
	425	fi' exit
	426
	427
	428	# BEI TERMINAL-BREAK:
[83]	429	trap 'rm -rf $working_directory/tmp_mrun
[69]	430	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	431	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	432	then
	433	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	434	fi
[260]	435	if [[ "$dvrserver_id" != "" ]]
	436	then
	437	echo "+++ killing dvrserver_id=$dvrserver_id"
	438	kill $dvrserver_id
	439	fi
[1]	440	printf "\n+++ MRUN killed by \"^C\" \n\n"
	441	locat=control_c
	442	exit
	443	' 2
	444
	445
[22]	446	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	447	# BEEN SET
	448	if [[ "$PALM_BIN" = "" ]]
	449	then
	450	printf "\n +++ environment variable PALM_BIN has not been set"
	451	printf "\n please set it to the directory where the PALM scripts are located"
	452	locat=palm_bin; exit
	453	fi
[180]	454	export PATH=$PALM_BIN:$PATH
[22]	455
	456
[1]	457
	458	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	459	# FUER FOLGEJOBS BENOETIGT WIRD
[622]	460	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vxX:yY: option
[1]	461	do
	462	case $option in
	463	(a) afname=$OPTARG;;
[397]	464	(A) store_on_archive_system=true; mc="$mc -A";;
[1]	465	(b) do_batch=true; mc="$mc -b";;
	466	(B) delete_temporary_catalog=false; mc="$mc -B";;
	467	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	468	(C) restart_run=true; mc="$mc -C";;
[1]	469	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	470	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	471	(F) job_on_file="-D"; mc="$mc -F";;
[122]	472	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	473	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	474	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	475	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	476	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	477	(I) ignore_archive_error=true; mc="$mc -I";;
	478	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	479	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	480	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	481	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	482	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	483	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
[622]	484	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
[1]	485	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	486	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	487	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	488	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	489	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	490	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	491	(S) read_from_config=false; mc="$mc -S";;
	492	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
	493	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
	494	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	495	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	496	(v) silent=true; mc="$mc -v";;
	497	(x) do_trace=true;set -x; mc="$mc -x";;
	498	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	499	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	500	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[1]	501	(\?) printf "\n +++ unknown option $OPTARG \n"
	502	printf "\n --> type \"$0 ?\" for available options \n"
	503	locat=parameter;exit;;
	504	esac
	505	done
	506
	507
	508	# EVTL. POSITIONSPARAMETER EINLESEN
	509	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	510	shift OPTIND-1
	511
	512
	513	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	514	if [[ "$1" = "?" ]]
	515	then
	516	(printf "\n *** mrun can be called as follows:\n"
[291]	517	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
[1]	518	printf "\n Description of available options:\n"
	519	printf "\n Option Description Default-Value"
	520	printf "\n -a base name of input files equiv. -d"
[400]	521	printf "\n -A archiving when using file-attribute fl"
[1]	522	printf "\n -b batch-job on local machine ---"
	523	printf "\n -B do not delete temporary directory at end ---"
	524	printf "\n -c configuration file .mrun.config"
	525	printf "\n -d base name of files attached to program test"
	526	printf "\n -D preprocessor(cpp)-directives \"\" "
	527	printf "\n -F create remote job file only ---"
	528	printf "\n -h execution host $localhost_realname"
	529	printf "\n -i INPUT control list \"\" "
	530	printf "\n -I archiving errors of previous batch-jobs"
	531	printf "\n will be ignored"
	532	printf "\n -k keep data from previous run"
	533	printf "\n -K additional conditions for controling"
	534	printf "\n usage of conditional code and"
	535	printf "\n env-variables in configuration file \"\" "
	536	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	537	printf "\n -M Makefile name Makefile"
	538	printf "\n -n node usage (shared/not_shared) depending on -h"
	539	printf "\n -o OUTPUT control list \"\" "
	540	printf "\n -O use OpenMP ---"
	541	printf "\n -p software package list \"\" "
	542	printf "\n -q queue \"$queue\" "
	543	printf "\n -r run control list (combines -i -o) \"\" "
	544	printf "\n -s filenames of routines to be compiled \"\" "
	545	printf "\n must end with .f, .f90, .F, or .c !"
	546	printf "\n use \"..\" for more than one file and wildcards"
	547	printf "\n -s TEST compiles all files with w-permit"
	548	printf "\n -S config file interpreted by shellscript ---"
	549	printf "\n -t allowed cpu-time in seconds (batch) 0"
	550	printf "\n -T tasks per node depending on -h"
	551	printf "\n -u username on remote machine \"\" "
	552	printf "\n -v no prompt for confirmation ---"
	553	printf "\n -x tracing of mrun for debug purposes ---"
	554	printf "\n -X # of processors (on parallel machines) 1"
[291]	555	printf "\n -y add appendix \"_O\" to all local output"
	556	printf "\n files (ocean precursor runs followed by"
	557	printf "\n coupled atmosphere-ocean runs) ---"
[206]	558	printf "\n -Y run coupled model, \"#1 #2\" with"
	559	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[1]	560	printf "\n "
	561	printf "\n Possible values of positional parameter <modus>:"
	562	printf "\n \"?\" - this outline \n\n") \| more
	563	exit
	564	elif [[ "$1" != "" ]]
	565	then
	566	printf "\n +++ positional parameter $1 unknown \n"
	567	locat=parameter; exit
	568	fi
	569
	570
	571
	572	# KURZE STARTMELDUNG
	573	printf "\n*** $version "
	574	printf "\n will be executed. Please wait ..."
	575
	576
[82]	577
	578	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	579	if [[ ! -f $config_file ]]
	580	then
	581	printf "\n\n +++ configuration file: "
	582	printf "\n $config_file"
	583	printf "\n does not exist"
	584	locat=connect; exit
	585	fi
	586
	587
	588	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	589	line=""
	590	grep "%host_identifier" $config_file > tmp_mrun
	591	while read line
	592	do
[206]	593	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	594	then
	595	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	596	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	597	if [[ $localhost_realname = $HOSTNAME ]]
[82]	598	then
	599	localhost=$host_identifier
	600	break
	601	fi
	602	fi
	603	done < tmp_mrun
	604
	605	if [[ "$localhost" = "" ]]
	606	then
	607	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	608	printf "\n for local host \"$localhost_realname\"."
	609	printf "\n Please add line"
	610	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	611	printf "\n to the configuration file."
	612	locat=localhost; exit
	613	fi
	614
	615
	616	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	617	case $localhost_realname in
[397]	618	(r1\|r2\|h01\|b01) archive_system=tivoli;;
[82]	619	(cs*) archive_system=ut;;
	620	(fimm.bccs.uib.no) fimm=true;;
	621	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	622	(scirocco) scirocco=true;;
	623	esac
	624
	625
	626
[1]	627	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	628	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	629	[[ "$afname" = "" ]] && afname=$fname
	630
	631
	632	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	633	if [[ "$run_mode" != "" ]]
	634	then
	635	input_list="$input_list $run_mode"
	636	output_list="$output_list $run_mode"
	637	fi
	638
	639
	640	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	641	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	642	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	643	# STARTET)
	644	if [[ "$fromhost" = "" ]]
	645	then
	646	fromhost=$localhost
	647	fi
	648
	649
	650	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
	651	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
	652	then
	653	source_list=TEST
	654	local_compile=true
	655	host=$localhost
	656	fi
	657
	658
	659	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	660	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	661	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	662	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	663	if [[ -n $host && "$host" != $localhost ]]
	664	then
	665	do_batch=true
	666	do_remote=true
	667	case $host in
[635]	668	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck) true;;
[1]	669	(*) printf "\n"
[83]	670	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	671	printf "\n is not available"
[1]	672	locat=nqs; (( iec = 0 )); exit;;
	673	esac
	674	else
	675	host=$localhost
	676	fi
	677
	678
	679	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	680	if [[ -n $additional_conditions ]]
	681	then
[69]	682	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	683	cond1=`echo $additional_conditions \| cut -d" " -f1`
	684	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	685	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	686	if [[ -n $dummy ]]
	687	then
	688	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	689	locat=options; exit
	690	fi
[503]	691	block=_$cond1
	692	[[ -n $cond2 ]] && block=${block}_$cond2
[1]	693	fi
	694
	695
[206]	696	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	697	if [[ $run_coupled_model = true ]]
	698	then
	699
	700	if [[ -n $coupled_dist ]]
	701	then
	702
	703	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	704	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	705
	706	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	707	then
	708
	709	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	710	printf "\n PEs (total) : $numprocs"
	711	printf "\n PEs (atmosphere): $numprocs_atmos"
	712	printf "\n PEs (ocean) : $numprocs_ocean"
	713	locat=coupling; exit
	714
	715	fi
	716
	717	else
	718
	719	(( numprocs_ocean = $numprocs / 2 ))
	720	(( numprocs_atmos = $numprocs / 2 ))
	721
	722	fi
	723	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	724
	725	# GET coupled_mode FROM THE CONFIG FILE
	726	line=""
	727	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	728	while read line
	729	do
	730	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
	731	then
	732	coupled_mode="mpi2"
	733	fi
	734	done < tmp_mrun
	735
	736	fi
	737
	738
[1]	739	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	740	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	741	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	742	then
	743	if [[ $ignore_archive_error = false ]]
	744	then
	745	printf "\n +++ data archiving of previous run failed"
	746	printf "\n see directory \~/job_queue on remote machine"
	747	locat=archive; exit
	748	else
	749	printf "\n +++ warning: data archiving in a previous run failed"
	750	printf "\n MRUN continues, trying to get backup copy"
	751	fi
	752	fi
	753
	754
	755
	756	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	757	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	758	if [[ "$read_from_config" = false ]]
	759	then
	760
	761	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	762	while read zeile
	763	do
	764	[[ $silent = false ]] && printf "."
	765
	766
	767	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	768	# ERSETZEN
	769	eval zeile=\"$zeile\"
	770
	771
	772	# INTERPRETATION DER ZEILE
[21]	773	if [[ "$(echo $zeile)" = "" ]]
[1]	774	then
[21]	775	# LEERZEILE, KEINE AKTION
	776	continue
[1]	777
[21]	778	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	779	then
	780
[1]	781	# ZEILE IST KOMMENTARZEILE
	782	true
	783
	784	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	785	then
	786
	787	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	788	zeile=$(echo $zeile \| cut -c2-)
[69]	789	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	790	var=`echo $zeile \| cut -d" " -f1`
	791	value=`echo $zeile \| cut -d" " -s -f2`
	792	for_host=`echo $zeile \| cut -d" " -s -f3`
	793	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	794	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	795
	796	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	797	then
	798
	799	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	800	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	801	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	802
	803
	804	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	805	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	806	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	807	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	808	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	809	# KONFIGURATIONSDATEI
	810	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	811	then
	812	eval $var=\$value
	813
	814	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	815	if [[ $do_trace = true ]]
	816	then
	817	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	818	fi
	819	fi
	820
	821	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	822	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	823	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	824	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	825	if [[ $var = host ]]
	826	then
	827	if [[ -n $host && "$host" != $localhost ]]
	828	then
	829	do_batch=true
	830	do_remote=true
	831	case $host in
[635]	832	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
[83]	833	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	834	printf "\n is not available"
[1]	835	locat=nqs; exit;;
	836	esac
	837	else
	838	host=$localhost
	839	fi
	840	fi
	841
	842	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	843	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	844	# DEN PROGRAMMEN BENOETIGT WERDEN
	845	export $var
	846	fi
	847
	848
	849
	850
	851	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	852	then
	853
	854	# ZEILE DEFINIERT ERROR-KOMMANDO
	855	(( iec = iec + 1 ))
	856	zeile=$(echo $zeile \| cut -c4-)
	857	err_command[$iec]="$zeile"
	858
	859	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	860	then
	861
	862	# ZEILE DEFINIERT INPUT-KOMMANDO
	863	(( iic = iic + 1 ))
	864	zeile=$(echo $zeile \| cut -c4-)
	865	in_command[$iic]="$zeile"
	866
	867	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	868	then
	869
	870	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	871	(( ioc = ioc + 1 ))
	872	zeile=$(echo $zeile \| cut -c4-)
	873	out_command[$ioc]="$zeile"
	874
	875	else
	876
	877	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	878	# s2a: in/out - Feld
	879	# s2b: loc - Feld (optional)
	880	# s2c: tr/ar - Feld (optional)
[69]	881	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	882	s1=`echo $zeile \| cut -d" " -f1`
	883	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	884	s2a=$(echo $s2 \| cut -d":" -f1)
	885	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	886	then
	887	s2b=""
	888	s2c=""
	889	else
[69]	890	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	891	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	892	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	893	fi
[69]	894	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	895	s3=`echo $zeile \| cut -d" " -f3`
	896	s4=`echo $zeile \| cut -d" " -s -f4`
	897	s5=`echo $zeile \| cut -d" " -s -f5`
	898	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	899
	900
	901	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	902	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	903	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	904	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	905	# HANDEN SEIN MUSS (D.H. s2b = loc)
	906	IFSALT="$IFS"; IFS="$IFS:"
	907	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	908	then
	909	found=false
	910	for actual in $input_list
	911	do
	912	for formal in $s3
	913	do
	914	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	915	done
	916	done
	917	if [[ $found = true ]]
	918	then
	919	(( iin = iin + 1 ))
	920	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	921	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	922	extin[$iin]=$s6
	923	fi
	924	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	925	then
	926	found=false
	927	for actual in $output_list
	928	do
	929	for formal in $s3
	930	do
	931	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	932	done
	933	done
	934	if [[ $found = true ]]
	935	then
	936	(( iout = iout + 1 ))
	937	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	938	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	939	fi
	940	elif [[ "$s2a" != in && "$s2a" != out ]]
	941	then
	942	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	943	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	944	locat=connect; exit
	945	fi
	946	IFS="$IFSALT"
	947	fi
	948	done < $config_file
	949
	950	else
	951
	952
	953	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	954	[[ $silent = false ]] && printf "..."
	955	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	956	export interpreted_config_file=.icf.$RANDOM
	957
	958
[69]	959
	960	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	961	# VERFUEGUNG STELLEN
	962	cat > .mrun_environment << %%END%%
	963	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	964	config_file = '$config_file', do_remote = '$do_remote',
	965	do_trace = '$do_trace', host = '$host',
	966	input_list = '$input_list', icf = '$interpreted_config_file',
	967	localhost = '$localhost', output_list = '$output_list' /
	968
	969	%%END%%
	970
	971	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	972	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	973	mrun_memory=$memory
[127]	974	mrun_group_number=$group_number
[69]	975	mrun_cpumax=$cpumax
	976	mrun_numprocs=$numprocs
	977
[251]	978	if [[ $localhost_realname = "sx-fep" ]]
[66]	979	then
[251]	980	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	981	else
[503]	982
	983	if [[ "$host" != $localhost ]]
	984	then
	985
	986	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
	987	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
	988	if [[ $? != 0 ]]
	989	then
	990	printf "\n\n +++ no interpret_config found"
	991	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
	992	locat=interpret_config; exit
	993	fi
	994	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
	995	$interpret_config_executable
	996
	997	else
	998
	999	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
	1000	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
	1001	then
	1002	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
	1003	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
	1004	locat=interpret_config; exit
	1005	else
	1006	interpret_config${block}.x
	1007	fi
	1008
	1009	fi
[66]	1010	fi
[71]	1011	rm .mrun_environment
[1]	1012
[71]	1013
[1]	1014	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	1015	chmod u+x $interpreted_config_file
	1016	export PATH=$PATH:.
	1017	. $interpreted_config_file
[71]	1018	rm $interpreted_config_file
[1]	1019
[71]	1020
[69]	1021	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[71]	1022	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	1023	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[71]	1024	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	1025	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
[69]	1026
[1]	1027	fi
	1028
	1029
	1030	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	1031	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	1032	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	1033	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	1034	if [[ "$SOURCES_COMPLETE" = "" ]]
	1035	then
	1036
	1037	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	1038	# VEREINBART WURDE
	1039	source_path=""
	1040	line=""
	1041	grep "%source_path" $config_file > tmp_mrun
	1042	while read line
	1043	do
	1044	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1045	then
	1046	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	1047	then
	1048	global_source_path=`echo $line \| cut -d" " -f2`
	1049	fi
	1050	fi
	1051	done < tmp_mrun
	1052
	1053	line=""
	1054	found=false
	1055	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	1056	while read line
	1057	do
	1058	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1059	then
	1060	if [[ $found = true ]]
	1061	then
	1062	printf "\n\n +++ more than one source path found in configuration file"
	1063	printf "\n for local host \"$localhost\" "
	1064	locat=source_path; exit
	1065	fi
	1066	source_path=`echo $line \| cut -d" " -f2`
	1067	found=true
	1068	fi
	1069	done < tmp_mrun
	1070	rm tmp_mrun
	1071
	1072	if [[ "$source_path" = "" ]]
	1073	then
	1074	if [[ "$global_source_path" != "" ]]
	1075	then
	1076	source_path=$global_source_path
	1077	else
	1078	printf "\n\n +++ no source path found in configuration file"
	1079	printf "\n for local host \"$localhost\" "
	1080	locat=source_path; exit
	1081	fi
	1082	fi
	1083	eval source_path=$source_path
	1084
	1085	if [[ ! -d $source_path ]]
	1086	then
	1087	printf "\n\n +++ source path \"$source_path\" on local host"
	1088	printf "\n \"$localhost\" does not exist"
	1089	locat=source_path; exit
	1090	fi
	1091
	1092	fi
	1093
	1094
[78]	1095	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	1096	# DURCH OPTION -G MITGETEILT)
	1097	if [[ "$global_revision" = "" ]]
	1098	then
	1099	global_revision=`svnversion $source_path 2>/dev/null`
	1100	global_revision="Rev: $global_revision"
	1101	fi
[1]	1102
[78]	1103
[1]	1104	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1105	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1106	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1107	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1108	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1109	if [[ -n $host && "$host" != $localhost ]]
	1110	then
	1111	do_batch=true
	1112	do_remote=true
	1113	case $host in
[635]	1114	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
[1]	1115	(*) printf "\n"
[83]	1116	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1117	printf "\n is not available"
[1]	1118	locat=nqs; (( iec = 0 )); exit;;
	1119	esac
	1120	else
	1121	host=$localhost
	1122	fi
	1123
	1124
	1125	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1126	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1127	then
	1128
	1129	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1130	if [[ ! -n $numprocs ]]
	1131	then
	1132	printf "\n"
	1133	printf "\n +++ option \"-K parallel\" requires additional specification"
	1134	printf "\n of the number of processors to be used by"
	1135	printf "\n mrun-option \"-X\" or by environment-variable"
	1136	printf "\n \"numprocs\" in the configuration file"
	1137	locat=numprocs; (( iec = 0 )); exit
	1138	fi
	1139
	1140	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1141	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1142	# GESAMTPROZESSORANZAHL IST
[622]	1143	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibms ]]
[1]	1144	then
	1145	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
	1146	(( ival = $tasks_per_node ))
	1147	(( pes = numprocs ))
	1148	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1149	# then
	1150	# (( pes = pes - 1 ))
	1151	# fi
	1152	(( ii = pes / ival ))
	1153	if (( pes - ii * ival > 0 ))
	1154	then
	1155	printf "\n"
	1156	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1157	printf "\n divisor of the total number of processors (option \"-X\")"
	1158	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1159	locat=tasks_per_node; (( iec = 0 )); exit
	1160	fi
	1161	fi
	1162
	1163	# IBMY HAT NUR EINEN KNOTEN
	1164	if [[ $host = ibmy ]]
	1165	then
	1166	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1167	then
	1168	printf "\n"
	1169	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1170	printf "\n total number of processors (option \"-X\")"
	1171	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1172	locat=tasks_per_node; (( iec = 0 )); exit
	1173	fi
	1174	fi
	1175
	1176	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
	1177	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
[622]	1178	# if [[ $use_openmp = true ]]
	1179	# then
	1180	# threads_per_task=$tasks_per_node
	1181	# tasks_per_node=1
	1182	# fi
[377]	1183
	1184	# SETTINGS FOR SUBJOB-COMMAND
[622]	1185	TOPT="-T $tasks_per_node"
[1]	1186	OOPT="-O $threads_per_task"
	1187
	1188	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1189	if [[ "$tasks_per_node" != "" ]]
	1190	then
	1191	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1192	fi
	1193
	1194	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1195	# SETZEN
	1196	if [[ $node_usage = default ]]
	1197	then
	1198	if [[ $host = ibms ]]
	1199	then
	1200	node_usage=shared
[181]	1201	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1202	then
	1203	node_usage=singlejob
[1]	1204	else
	1205	node_usage=not_shared
	1206	fi
	1207	fi
[181]	1208
[635]	1209	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
[1]	1210	then
	1211	printf "\n"
	1212	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1213	printf "\n \"shared\" or \"not_shared\""
	1214	locat=tasks_per_node; (( iec = 0 )); exit
	1215	fi
	1216
	1217	fi
	1218
	1219	# PRUEFEN, OB HOSTFILE EXISTIERT
	1220	if [[ -n $hostfile ]]
	1221	then
	1222	if [[ ! -f $hostfile ]]
	1223	then
	1224	printf "\n"
	1225	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1226	locat=hostfile; exit
	1227	fi
	1228	fi
	1229
	1230	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1231	if [[ $host = ibmy && $do_remote = false ]]
	1232	then
	1233	if [[ ! -f $HOME/.rhosts ]]
	1234	then
	1235	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1236	printf "\n\n *** file:"
	1237	printf "\n $HOME/.rhosts"
	1238	printf "\n was created\n"
	1239	fi
	1240	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1241	then
	1242	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1243	printf "\n\n *** file:"
	1244	printf "\n $HOME/.rhosts"
	1245	printf "\n was extended by the name of the current host\n"
	1246	fi
	1247	fi
	1248
	1249
	1250
	1251	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1252	if [[ $queue = none ]]
	1253	then
	1254	case $host in
[312]	1255	(ibmh) queue=no_class;;
[1]	1256	(ibmy) queue=parallel;;
[440]	1257	(lckyoto) queue=ph;;
[191]	1258	(lcsgib) queue=bigq;;
	1259	(lcsgih) queue=bigq;;
[635]	1260	(lctit) queue=S;;
[1]	1261	(nech) queue=none;;
[253]	1262	(necriam) queue=SP;;
[1]	1263	(unics) queue=unics;;
	1264	esac
	1265	fi
	1266
	1267
	1268	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1269	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1270	# ERMITTELN
	1271	(( i = 0 ))
	1272	while (( i < iin ))
	1273	do
	1274	(( i = i + 1 ))
	1275	(( maxcycle = 0 ))
	1276
	1277	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1278	if [[ "${actionin[$i]}" = di ]]
	1279	then
	1280	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1281	# REM-MASCHINE AUSWERTEN
	1282	eval filename=${pathin[$i]}/${endin[$i]}
	1283	else
	1284	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1285	# REM-MASCHINE AUSWERTEN
	1286	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1287	fi
	1288
	1289	# PRUEFEN AUF VORHANDENSEIN
	1290	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1291	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1292	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1293	then
	1294	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1295	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1296	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1297	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1298	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1299	if [[ "${transin[$i]}" != "locopt" ]]
	1300	then
	1301	printf "\n\n +++ INPUT-file: "
	1302	if [[ "${extin[$i]}" = "" ]]
	1303	then
	1304	printf "\n $filename"
	1305	else
	1306	printf "\n $filename.${extin[$i]}"
	1307	fi
	1308	printf "\n does not exist\n"
	1309	locat=input; exit
	1310	else
	1311	transin[$i]="unavailable"
	1312	fi
	1313	else
	1314
	1315	# ZYKLUSNUMMER FESTSTELLEN
	1316	ls -1 -d $filename > filelist 2>/dev/null
	1317	ls -1 -d $filename.* >> filelist 2>/dev/null
	1318	while read zeile
	1319	do
	1320	cycle=$(print $zeile \| cut -f2 -d".")
	1321	if [[ "$cycle" = "$zeile" ]]
	1322	then
	1323	(( icycle = 0 ))
	1324	elif [[ "$cycle" = "${extin[$i]}" ]]
	1325	then
	1326	(( icycle = 0 ))
	1327	else
	1328	(( icycle = $cycle ))
	1329	fi
	1330	if (( icycle > maxcycle ))
	1331	then
	1332	(( maxcycle = icycle ))
	1333	file_to_be_used=$zeile
	1334	fi
	1335	done <filelist
	1336	rm filelist
	1337
	1338	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1339	if (( maxcycle > 0 ))
	1340	then
	1341	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1342	then
	1343	filename=${filename}.$maxcycle.${extin[$i]}
	1344	else
	1345	filename=${filename}.$maxcycle
	1346	fi
	1347	else
	1348	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1349	then
	1350	filename=${filename}.${extin[$i]}
	1351	fi
	1352	fi
	1353
	1354	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1355	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1356	absnamein[$i]=$filename
	1357	if (( maxcycle > 0 ))
	1358	then
	1359	if [[ "${actionin[$i]}" = di ]]
	1360	then
	1361	frelin[$i]=${endin[$i]}.$maxcycle
	1362	else
	1363	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1364	fi
	1365	else
	1366	if [[ "${actionin[$i]}" = di ]]
	1367	then
	1368	frelin[$i]=${endin[$i]}
	1369	else
	1370	frelin[$i]=${afname}${endin[$i]}
	1371	fi
	1372	fi
	1373
	1374	fi
	1375	done
	1376
	1377
	1378	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1379	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1380	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1381	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1382	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1383	(( i = 0 ))
	1384	while (( i < iout ))
	1385	do
	1386	(( i = i + 1 ))
	1387	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1388	then
[260]	1389	if [[ "${actionout[$i]}" = tr ]]
[1]	1390	then
	1391	actionout[$i]=""
[260]	1392	elif [[ "${actionout[$i]}" = trpe ]]
	1393	then
	1394	actionout[$i]=pe
[1]	1395	elif [[ "${actionout[$i]}" = tra ]]
	1396	then
	1397	actionout[$i]=a
	1398	fi
	1399	(( maxcycle = 0 ))
	1400	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1401	eval catalogname=${pathout[$i]}
	1402	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1403	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1404	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1405	then
	1406
	1407	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1408	if cat /dev/null > $filename
	1409	then
	1410	rm $filename
	1411	else
	1412
	1413	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1414	if [[ ! -d $catalogname ]]
	1415	then
	1416	if mkdir -p $catalogname
	1417	then
	1418	printf "\n\n *** directory:"
	1419	printf "\n $catalogname"
	1420	printf "\n was created\n"
	1421	else
	1422	printf "\n\n +++ OUTPUT-file:"
	1423	printf "\n $filename"
	1424	printf "\n cannot be created, because directory does not exist"
	1425	printf "\n and cannot be created either"
	1426	printf "\n"
	1427	locat=output ; exit
	1428	fi 2>/dev/null
	1429	else
	1430	printf "\n\n +++ OUTPUT-file:"
	1431	printf "\n $filename"
	1432	printf "\n cannot be created, although directory exists"
	1433	printf "\n"
	1434	locat=output ; exit
	1435	fi
	1436	fi 2>/dev/null
	1437	else
	1438
	1439	# ZYKLUSNUMMER FESTSTELLEN
	1440	ls -1 -d $filename > filelist 2>/dev/null
	1441	ls -1 -d $filename.* >> filelist 2>/dev/null
	1442	while read zeile
	1443	do
	1444	cycle=$(print $zeile \| cut -f2 -d".")
	1445	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1446	then
	1447	(( icycle = 1 ))
	1448	else
	1449	(( icycle = $cycle + 1 ))
	1450	fi
	1451	if (( icycle > maxcycle ))
	1452	then
	1453	(( maxcycle = icycle ))
	1454	fi
	1455	done <filelist
	1456	rm filelist
	1457	fi
	1458
	1459	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1460	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1461	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1462	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1463	if [[ "${actionout[$i]}" != a ]]
	1464	then
	1465	if (( maxcycle > 0 ))
	1466	then
	1467	filename=${filename}.$maxcycle
	1468	if cat /dev/null > $filename
	1469	then
	1470	rm $filename
	1471	else
	1472	printf "\n +++ OUTPUT-file:"
	1473	printf "\n $filename"
	1474	printf "\n cannot be created"
	1475	locat=output ; exit
	1476	fi
	1477	fi
	1478	else
	1479	(( maxcycle = maxcycle - 1 ))
	1480	if (( maxcycle > 0 ))
	1481	then
	1482	filename=${filename}.$maxcycle
	1483	fi
	1484	fi
	1485
	1486	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1487	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1488	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1489	pathout[$i]=$filename
	1490	if (( maxcycle > 0 ))
	1491	then
	1492	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1493	else
	1494	frelout[$i]=${fname}${endout[$i]}
	1495	fi
	1496
	1497	fi
	1498	done
	1499
	1500
[260]	1501	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1502	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1503	then
[260]	1504	if [[ "$dvr_inc" = "" ]]
[83]	1505	then
[260]	1506	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1507	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1508	locat=dvr; exit
[83]	1509	fi
[260]	1510	if [[ "$dvr_lib" = "" ]]
[83]	1511	then
[260]	1512	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1513	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1514	locat=dvr; exit
[83]	1515	fi
	1516	fi
	1517
	1518
[1]	1519	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1520	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1521	# UEBERSETZT ZU WERDEN)
	1522	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1523	then
	1524	printf "\n +++ neither main program nor executable defined"
	1525	locat=source; exit
	1526	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1527	then
	1528	printf "\n +++ main program as well as executable defined"
	1529	locat=source; exit
	1530	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1531	then
	1532	do_compile=false
	1533	fi
	1534
	1535
[191]	1536	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1537	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1538	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1539	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1540	then
	1541	rm -rf SOURCES_FOR_RUN_$fname
	1542	mkdir SOURCES_FOR_RUN_$fname
	1543	fi
	1544
	1545
[1]	1546	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1547	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1548	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1549	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1550	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1551	then
	1552
[5]	1553	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
	1554	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
[1]	1555
	1556
	1557	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
	1558	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
	1559	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
	1560	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
	1561	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
	1562	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
	1563	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
	1564	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
	1565	# GESAMMELT
[5]	1566	if [[ "$source_list" = WRITE_PERMIT ]]
[1]	1567	then
	1568
	1569	source_list=""
	1570	cd $source_path
	1571
	1572
	1573	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
	1574	Names=$(ls -1 *.f90 2>&1)
	1575	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
	1576	Names=$(ls -1 *.F90 2>&1)
	1577	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
	1578	Names=$(ls -1 *.F 2>&1)
	1579	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
	1580	Names=$(ls -1 *.f 2>&1)
	1581	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
	1582	Names=$(ls -1 *.c 2>&1)
	1583	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
	1584
	1585
	1586	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
	1587	for dateiname in $Filenames
	1588	do
	1589	if [[ -w $dateiname ]]
	1590	then
	1591	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
	1592	then
	1593	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1594	source_list=$source_list"$dateiname "
	1595	fi
	1596	fi
	1597	done
	1598
	1599	cd - > /dev/null
	1600
	1601
[5]	1602	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
	1603	then
	1604
	1605	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1606	source_list=""
	1607	cd $source_path
	1608
	1609
	1610	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1611	if [[ ! -d .svn ]]
	1612	then
	1613	printf "\n\n +++ source directory"
	1614	printf "\n \"$source_path\" "
	1615	printf "\n is not under control of \"subversion\"."
[306]	1616	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1617	fi
	1618
	1619
	1620	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1621	Filenames=""
[69]	1622	svn status > tmp_mrun
	1623	while read line
[5]	1624	do
	1625	firstc=`echo $line \| cut -c1`
	1626	if [[ $firstc = M \|\| $firstc = "?" ]]
	1627	then
	1628	Name=`echo "$line" \| cut -c8-`
	1629	extension=`echo $Name \| cut -d. -f2`
	1630	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1631	then
	1632	Filenames="$Filenames "$Name
	1633	fi
	1634	fi
[69]	1635	done < tmp_mrun
[5]	1636
	1637
	1638	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1639	for dateiname in $Filenames
	1640	do
	1641	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1642	source_list=$source_list"$dateiname "
	1643	done
	1644
	1645	cd - > /dev/null
	1646
	1647
[1]	1648	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1649	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1650	# VORHANDEN
[5]	1651	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1652	then
	1653
	1654	cd $source_path
	1655
	1656	for filename in $source_list
	1657	do
	1658
	1659	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1660	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1661	then
	1662	printf "\n +++ source code file: $filename"
	1663	printf "\n must not contain (\"/\") "
	1664	locat=source; exit
	1665	fi
	1666
	1667	if [[ ! -f $filename ]]
	1668	then
	1669	printf "\n +++ source code file: $filename"
	1670	printf "\n does not exist"
	1671	locat=source; exit
	1672	else
	1673	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1674	fi
	1675
	1676	done
	1677
	1678	cd - > /dev/null
	1679
	1680	fi
	1681
	1682
	1683	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1684	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1685	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1686	if [[ $restart_run != true ]]
[1]	1687	then
	1688
	1689	if [[ ! -f "$source_path/$mainprog" ]]
	1690	then
	1691	printf "\n\n +++ main program: $mainprog"
	1692	printf "\n does not exist in source directory"
	1693	printf "\n \"$source_path\"\n"
	1694	locat=source; exit
	1695	else
	1696	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1697	then
	1698	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1699	source_list=${mainprog}" $source_list"
	1700	fi
	1701	fi
	1702	fi
	1703
	1704
[211]	1705	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1706	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1707	if [[ "$restart_run" != true ]]
	1708	then
	1709	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1710	if [[ ! -f $makefile ]]
	1711	then
	1712	printf "\n +++ file \"$makefile\" does not exist"
	1713	locat=make; exit
	1714	else
	1715	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1716	fi
	1717	fi
	1718
	1719
[1]	1720	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1721	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1722	then
	1723
	1724	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1725	if [[ ! -d $add_source_path ]]
	1726	then
	1727	printf "\n\n +++ WARNING: additional source code directory"
	1728	printf "\n \"$add_source_path\" "
	1729	printf "\n does not exist or is not a directory."
	1730	printf "\n No source code will be used from this directory!\n"
	1731	add_source_path=""
	1732	sleep 3
	1733	else
	1734
	1735	cd $add_source_path
[211]	1736	found=false
[1]	1737
	1738	Names=$(ls -1 *.f90 2>&1)
	1739	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1740	Names=$(ls -1 *.F90 2>&1)
	1741	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1742	Names=$(ls -1 *.F 2>&1)
	1743	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1744	Names=$(ls -1 *.f 2>&1)
	1745	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1746	Names=$(ls -1 *.c 2>&1)
	1747	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1748
	1749	cd - > /dev/null
	1750	cd SOURCES_FOR_RUN_$fname
	1751
[211]	1752	# COPY MAKEFILE IF EXISTING
	1753	if [[ -f $add_source_path/Makefile ]]
	1754	then
	1755	printf "\n\n *** user Makefile from directory"
	1756	printf "\n \"$add_source_path\" is used \n"
	1757	sleep 1
	1758	cp $add_source_path/Makefile .
	1759	fi
	1760
[1]	1761	for dateiname in $AddFilenames
	1762	do
	1763	if [[ -f $dateiname ]]
	1764	then
	1765	printf "\n +++ source code file \"$dateiname\" found in additional"
	1766	printf "\n source code directory \"$add_source_path\" "
[211]	1767	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1768	printf "\n from directory \"$source_path\"."
[1]	1769	locat=source; exit
	1770	fi
	1771
	1772	cp $add_source_path/$dateiname .
	1773	source_list="$source_list $dateiname"
	1774
[211]	1775	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1776	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1777	then
	1778	printf "\n\n +++ user file \"$dateiname\" "
	1779	printf "\n is not listed in Makefile \n"
	1780	locat=source; exit
	1781	else
	1782
[1]	1783	# Default User-Interface von der Liste entfernen, falls Datei
	1784	# ein User-Interface enthaelt
[211]	1785	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1786	# then
	1787	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1788	# then
	1789	# rm -rf user_interface.f90
	1790	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1791	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1792	# printf "\n since a user-interface is found in file"
	1793	# printf "\n \"$add_source_path/$dateiname\" \n"
	1794	# sleep 3
	1795	# else
	1796	if [[ $found = false ]]
[1]	1797	then
[211]	1798	found=true
	1799	printf "\n\n *** following user file(s) added to the"
	1800	printf " files to be translated:\n "
[1]	1801	fi
[211]	1802	printf "$dateiname "
	1803	sleep 0.5
[1]	1804	fi
	1805	done
[211]	1806	[[ $found = true ]] && printf "\n"
[1]	1807	cd - > /dev/null
	1808	fi
	1809	fi
	1810
	1811
	1812	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1813	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1814	if [[ $restart_run != true && -n $package_list ]]
[1]	1815	then
	1816
	1817	cd $source_path
	1818
	1819	for package in $package_list
	1820	do
	1821
	1822	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1823
	1824	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1825	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1826	# LIEFERT
	1827	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1828
	1829
	1830	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1831	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1832	for source_list_name in $package_source_list
	1833	do
	1834	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1835	then
	1836
	1837	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1838	ending=`echo $source_list_name \| cut -f2 -d.`
	1839	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1840	then
	1841	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1842	source_list="$source_list $source_list_name"
	1843	fi
	1844	fi
	1845	done
	1846	done
	1847
	1848	cd - > /dev/null
	1849	fi
	1850
	1851
	1852	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1853	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1854	# if [[ "$restart_run" != true ]]
	1855	# then
	1856	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1857	# if [[ ! -f $makefile ]]
	1858	# then
	1859	# printf "\n +++ file \"$makefile\" does not exist"
	1860	# locat=make; exit
	1861	# else
	1862	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1863	# fi
	1864	# fi
[1]	1865
	1866	fi # do_compile=true
	1867
	1868
	1869	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1870	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1871	if [[ $do_compile = true ]]
	1872	then
	1873
	1874	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1875	# ZUSAMMENSETZEN
[83]	1876	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1877	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1878	then
[82]	1879	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1880	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1881	then
[82]	1882	cpp_options="$cpp_options -D__nec"
	1883	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1884	then
	1885	cpp_options="$cpp_options -D__lc"
[1]	1886	else
[82]	1887	cpp_options="$cpp_options -D__$localhost"
[1]	1888	fi
[83]	1889
	1890	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1891	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1892	then
[82]	1893	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1894	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1895	else
[82]	1896	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1897	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1898	fi
[83]	1899
	1900	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1901	if [[ -n $package_list ]]
	1902	then
	1903	for package in $package_list
	1904	do
	1905	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1906	then
	1907	if [[ $package != "dvrp_graphics+1PE" ]]
	1908	then
[82]	1909	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1910	else
[82]	1911	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1912	export use_seperate_pe_for_dvrp_output=true
	1913	fi
	1914	else
	1915	if [[ $package != "dvrp_graphics+1PE" ]]
	1916	then
[82]	1917	cpp_options="$cpp_options -D__$package"
[1]	1918	else
[82]	1919	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1920	export use_seperate_pe_for_dvrp_output=true
	1921	fi
	1922	fi
	1923	done
	1924	fi
[83]	1925
	1926	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1927	if [[ -n $cpp_opts ]]
	1928	then
	1929	for popts in $cpp_opts
	1930	do
[82]	1931	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1932	then
	1933	cpp_options="${cpp_options},-D__$popts=__$popts"
	1934	else
	1935	cpp_options="$cpp_options -D__$popts"
	1936	fi
[1]	1937	done
	1938	fi
	1939
	1940	else
	1941
	1942
	1943	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1944	if [[ $do_remote = false ]]
	1945	then
	1946	if [[ ! -f $executable ]]
	1947	then
	1948	printf "\n +++ executable file: $executable"
	1949	printf "\n does not exist"
	1950	locat=executable; exit
	1951	fi
	1952	fi
	1953	fi
	1954
	1955
	1956	# JOBMODUS FESTSTELLEN
[635]	1957	if [[ "$ENVIRONMENT" = BATCH ]]
[1]	1958	then
	1959	jobmo=BATCH
	1960	else
	1961	jobmo=INTERACTIVE
	1962	fi
	1963
	1964
[635]	1965	# no interactive runs on lctit
	1966	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
	1967	then
	1968	printf "\n +++ no interactive runs allowed on host \"$host\" "
	1969	printf "\n please submit batch job using mrun option \"-b\" \n"
	1970	locat=normal; exit
	1971	fi
	1972
	1973
[1]	1974	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1975	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1976	if [[ "$compiler_name" = "" ]]
	1977	then
[82]	1978
[220]	1979	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1980	locat=compiler_name; exit
	1981
[1]	1982	fi
	1983
	1984
[251]	1985	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	1986	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	1987
	1988
	1989
	1990	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	1991	kennung=$RANDOM
	1992	if [[ "$tmp_user_catalog" = "" ]]
	1993	then
[312]	1994	if [[ $localhost = ibmh ]]
[1]	1995	then
[312]	1996	tmp_user_catalog=$SCRATCH
[1]	1997	elif [[ $localhost = nech ]]
	1998	then
	1999	tmp_user_catalog=$WRKSHR
	2000	else
	2001	tmp_user_catalog=/tmp
	2002	fi
	2003	fi
	2004	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	2005
	2006
	2007	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	2008	# BESTIMMEN
	2009	if [[ "$tmp_data_catalog" = "" ]]
	2010	then
[622]	2011	if [[ $localhost = nech ]]
[1]	2012	then
	2013	tmp_data_catalog=$WRKSHR/mrun_restart_data
	2014	else
	2015	tmp_data_catalog=/tmp/mrun_restart_data
	2016	fi
	2017	fi
	2018
	2019
	2020	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	2021	# ERSETZEN
	2022	if [[ $do_remote = false && $do_compile = true ]]
	2023	then
	2024	eval fopts=\"$fopts\"
	2025	eval lopts=\"$lopts\"
	2026	fi
	2027
	2028
	2029
	2030	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	2031	fopts="$fopts $netcdf_inc $dvr_inc"
	2032	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	2033	ROPTS="$ropts"
[440]	2034	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck ) && -n $numprocs ]]
[1]	2035	then
	2036	XOPT="-X $numprocs"
	2037	fi
	2038
	2039
	2040
	2041	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	2042	# GRAMM BENOETIGT
	2043	done=false
	2044	while [[ $done = false ]]
	2045	do
	2046	cputime=$cpumax
	2047	if (( $cputime == 0 ))
	2048	then
[246]	2049	if [[ $do_batch = true ]]
	2050	then
	2051	printf "\n +++ cpu-time is undefined"
	2052	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	2053	printf "\n >>> "
	2054	read cputime 1>/dev/null 2>&1
	2055	else
	2056	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	2057	fi
[1]	2058	else
	2059	done=true
	2060	fi
	2061	cpumax=$cputime
	2062	done
	2063
	2064	(( minuten = cputime / 60 ))
	2065	(( sekunden = cputime - minuten * 60 ))
	2066
	2067
	2068	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	2069	if [[ $do_batch = true ]]
	2070	then
	2071	done=false
	2072	while [[ $done = false ]]
	2073	do
	2074	if (( memory == 0 ))
	2075	then
	2076	printf "\n +++ memory demand is undefined"
	2077	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	2078	printf "\n >>> "
	2079	read memory 1>/dev/null 2>&1
	2080	else
	2081	done=true
	2082	fi
	2083	done
	2084	fi
	2085
	2086
	2087	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	2088	if [[ $do_remote = true && -z $remote_username ]]
	2089	then
	2090	while [[ -z $remote_username ]]
	2091	do
	2092	printf "\n +++ username on remote host \"$host\" is undefined"
	2093	printf "\n >>> Please type username:"
	2094	printf "\n >>> "
	2095	read remote_username
	2096	done
	2097	mc="$mc -u$remote_username"
	2098	fi
	2099
[221]	2100
[493]	2101	# set module load command and export for subjob
	2102	if [[ "$modules" != "" ]]
	2103	then
	2104	export module_calls="module load ${modules};"
	2105	fi
	2106
[555]	2107	# bugfix for wrong netcdf module
[562]	2108	if [[ $host = lcsgib \|\| $host = lcsgih ]]
[555]	2109	then
	2110	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
	2111	then
[562]	2112	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
[555]	2113	fi
	2114	fi
[493]	2115
[555]	2116
[221]	2117	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2118	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2119	then
[493]	2120	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
	2121	then
	2122	mpilib=mpt
	2123	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
	2124	then
	2125	mpilib=mvapich
	2126	fi
[221]	2127	fi
	2128
	2129
	2130
[1]	2131	###########################################################################
	2132	# HEADER-AUSGABE
	2133	###########################################################################
	2134
	2135
	2136	calltime=$(date)
	2137	printf "\n"
	2138	# [[ $silent = false ]] && clear
	2139	printf "#--------------------------------------------------------------# \n"
	2140	printf "\| $version$calltime \| \n"
	2141	printf "\| \| \n"
	2142	spalte1="called on:"; spalte2=$localhost_realname
	2143	printf "\| $spalte1$spalte2 \| \n"
	2144	if [[ $local_compile = false ]]
	2145	then
	2146	if [[ $do_remote = true ]]
	2147	then
	2148	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2149	else
	2150	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2151	fi
	2152	else
	2153	spalte1="compiling test only!"; spalte2=""
	2154	fi
	2155	printf "\| $spalte1$spalte2 \| \n"
	2156	if [[ -n $numprocs ]]
	2157	then
	2158	spalte1="number of PEs:"; spalte2=$numprocs
	2159	printf "\| $spalte1$spalte2 \| \n"
	2160	fi
	2161	if [[ -n $tasks_per_node ]]
	2162	then
	2163	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	2164	printf "\| $spalte1$spalte2 \| \n"
	2165	fi
[622]	2166	if [[ $use_openmp = true ]]
[1]	2167	then
	2168	spalte1="threads per task:"; spalte2="$threads_per_task"
	2169	printf "\| $spalte1$spalte2 \| \n"
	2170	fi
	2171	printf "\| \| \n"
	2172	if [[ $do_compile = true ]]
	2173	then
[475]	2174	if [[ "$mopts" != "" ]]
	2175	then
[493]	2176	spalte1="make options:"; spalte2=$mopts
[475]	2177	printf "\| $spalte1$spalte2 \| \n"
	2178	zeile=$(echo "$mopts" \| cut -c41-)
	2179	while [[ "$zeile" != "" ]]
	2180	do
	2181	spalte1=""
	2182	spalte2=$zeile
	2183	printf "\| $spalte1$spalte2 \| \n"
	2184	zeile=$(echo "$zeile" \| cut -c41-)
	2185	done
	2186	fi
	2187
[493]	2188	spalte1="cpp directives:"; spalte2=$cpp_options
[1]	2189	printf "\| $spalte1$spalte2 \| \n"
[82]	2190	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2191	while [[ "$zeile" != "" ]]
	2192	do
	2193	spalte1=""
	2194	spalte2=$zeile
	2195	printf "\| $spalte1$spalte2 \| \n"
	2196	zeile=$(echo "$zeile" \| cut -c41-)
	2197	done
	2198
[493]	2199	spalte1="compiler options:"; spalte2="$fopts"
[1]	2200	printf "\| $spalte1$spalte2 \| \n"
[82]	2201	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2202	while [[ "$zeile" != "" ]]
	2203	do
	2204	spalte1=""
	2205	spalte2=$zeile
	2206	printf "\| $spalte1$spalte2 \| \n"
	2207	zeile=$(echo "$zeile" \| cut -c41-)
	2208	done
	2209
[493]	2210	spalte1="linker options:"; spalte2=$lopts
[1]	2211	printf "\| $spalte1$spalte2 \| \n"
[82]	2212	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2213	while [[ "$zeile" != "" ]]
	2214	do
	2215	spalte1=""
	2216	spalte2=$zeile
	2217	printf "\| $spalte1$spalte2 \| \n"
	2218	zeile=$(echo "$zeile" \| cut -c41-)
	2219	done
	2220
[493]	2221	spalte1="modules to be load:"; spalte2=$modules
	2222	printf "\| $spalte1$spalte2 \| \n"
	2223	zeile=$(echo "$modules" \| cut -c41-)
	2224	while [[ "$zeile" != "" ]]
	2225	do
	2226	spalte1=""
	2227	spalte2=$zeile
	2228	printf "\| $spalte1$spalte2 \| \n"
	2229	zeile=$(echo "$zeile" \| cut -c41-)
	2230	done
	2231
[1]	2232	spalte1="main program":; spalte2=$mainprog
	2233	printf "\| $spalte1$spalte2 \| \n"
	2234	else
	2235	spalte1=executable:; spalte2=$executable
	2236	printf "\| $spalte1$spalte2 \| \n"
	2237	fi
	2238	printf "\| \| \n"
	2239	spalte1="base name of files":; spalte2=$fname
	2240	printf "\| $spalte1$spalte2 \| \n"
	2241	if [[ $fname != $afname ]]
	2242	then
	2243	spalte1="base name of input files":; spalte2=$afname
	2244	printf "\| $spalte1$spalte2 \| \n"
	2245	fi
	2246	spalte1="INPUT control list":; spalte2=$input_list
	2247	printf "\| $spalte1$spalte2 \| \n"
	2248	spalte1="OUTPUT control list":; spalte2=$output_list
	2249	printf "\| $spalte1$spalte2 \| \n"
	2250
	2251	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2252	then
	2253	spalte1="memory demand / PE":; spalte2="$memory MB"
	2254	printf "\| $spalte1$spalte2 \| \n"
	2255	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2256	printf "\| $spalte1$spalte2 \| \n"
	2257	fi
	2258
	2259	if [[ $do_compile = true ]]
	2260	then
	2261	printf "\| \| \n"
	2262	printf "\| Files to be compiled: \| \n"
	2263	zeile=$source_list
	2264	while [[ "$zeile" != "" ]]
	2265	do
	2266	spalte3=$zeile
	2267	printf "\| $spalte3 \| \n"
	2268	zeile=$(echo "$zeile" \| cut -c61-)
	2269	done
	2270	fi
	2271	printf "#--------------------------------------------------------------#"
	2272
	2273
	2274
	2275	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2276	if [[ $do_trace = true ]]
	2277	then
	2278	(( i = 0 ))
	2279	while (( i < iin ))
	2280	do
	2281	(( i = i + 1 ))
	2282	if (( i == 1 ))
	2283	then
	2284	printf "\n\n >>> INPUT-file assignments:\n"
	2285	fi
	2286	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2287	done
	2288	(( i = 0 ))
	2289	while (( i < iout ))
	2290	do
	2291	(( i = i + 1 ))
	2292	if (( i == 1 ))
	2293	then
	2294	printf "\n\n >>> OUTPUT-file assignments:\n"
	2295	fi
	2296	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2297	done
	2298	(( i = 0 ))
	2299	while (( i < iic ))
	2300	do
	2301	(( i = i + 1 ))
	2302	if (( i == 1 ))
	2303	then
	2304	printf "\n\n >>> INPUT-commands:\n"
	2305	fi
	2306	printf "\n ${in_command[$i]}"
	2307	done
	2308	(( i = 0 ))
	2309	while (( i < ioc ))
	2310	do
	2311	(( i = i + 1 ))
	2312	if (( i == 1 ))
	2313	then
	2314	printf "\n\n >>> OUTPUT-commands:\n"
	2315	fi
	2316	printf "\n ${out_command[$i]}"
	2317	done
	2318	fi
	2319
	2320
	2321	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2322	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2323	then
	2324	antwort=dummy
	2325	printf "\n\n"
	2326	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2327	do
	2328	printf " >>> everything o.k. (y/n) ? "
	2329	read antwort
	2330	done
	2331	if [[ $antwort = n \|\| $antwort = N ]]
	2332	then
	2333	locat=user_abort; (( iec = 0 )); exit
	2334	fi
	2335	if [[ $do_batch = true ]]
	2336	then
	2337	printf " >>> batch-job will be created and submitted"
	2338	else
	2339	if [[ $local_compile = false ]]
	2340	then
	2341	printf " >>> MRUN will now continue to execute on this machine"
	2342	else
	2343	printf " >>> a test compilation will now be carried out on this machine"
	2344	fi
	2345	fi
	2346	fi
	2347
	2348
	2349
	2350
	2351	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2352	# CHENDE AKTIONEN DURCHGEFUEHRT
	2353	if [[ $do_batch = false ]]
	2354	then
	2355
	2356
	2357	# TEMPORAEREN KATALOG ERZEUGEN
	2358	mkdir -p $TEMPDIR
	2359	chmod go+rx $TEMPDIR
	2360	tmpcreate=true
	2361
[493]	2362	# set striping on lustre file system
	2363	# if [[ $localhost = lcsgih ]]
	2364	# then
	2365	# lfs setstripe -s 8192k -c 16 $TEMPDIR
	2366	# lfs getstripe $TEMPDIR
	2367	# fi
[1]	2368
[493]	2369
[1]	2370	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2371	# TEMPORAERES VERZEICHNIS KOPIEREN
	2372	if [[ $do_compile = true ]]
	2373	then
	2374
	2375	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2376	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2377	if [[ $localhost = nech ]]
	2378	then
	2379	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2380	if mkdir -p $TEMPDIR_COMPILE
	2381	then
	2382	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2383	printf "\n is generated as temporary directory for cross compiling\n"
	2384	else
	2385	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2386	printf "\n needed for cross compilation failed"
	2387	locat=compile
	2388	exit
	2389	fi
	2390	else
	2391	TEMPDIR_COMPILE=$TEMPDIR
	2392	fi
	2393
	2394
[82]	2395	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2396	line=""
	2397	grep "%depository_path" $config_file > tmp_mrun
	2398	while read line
	2399	do
	2400	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2401	then
	2402	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2403	then
[82]	2404	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2405	fi
[82]	2406	fi
	2407	done < tmp_mrun
[1]	2408
[82]	2409	line=""
	2410	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2411	while read line
	2412	do
	2413	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2414	then
[211]	2415	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2416	then
	2417	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2418	fi
[1]	2419	fi
[82]	2420	done < tmp_mrun
[1]	2421
[82]	2422	if [[ "$local_depository_path" = "" ]]
	2423	then
	2424	if [[ "$global_depository_path" != "" ]]
[1]	2425	then
[82]	2426	local_depository_path=$global_depository_path
[1]	2427	else
[82]	2428	printf "\n\n +++ no depository path found in configuration file"
	2429	printf "\n for local host \"$localhost\" "
	2430	printf "\n please set \"\%depository_path\" in configuration file\n"
	2431	locat=config_file; exit
[1]	2432	fi
[82]	2433	fi
	2434	eval local_depository_path=$local_depository_path
[215]	2435	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2436	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2437
[215]	2438
[82]	2439	basename=`print $mainprog \| cut -f1 -d"."`
	2440	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2441	if [[ ! -f $make_depository ]]
	2442	then
	2443	printf "\n"
	2444	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2445	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2446	else
	2447	cp $make_depository $TEMPDIR_COMPILE
[1]	2448	cd $TEMPDIR_COMPILE
[82]	2449	tar -xf $make_depository > /dev/null 2>&1
[1]	2450	cd - > /dev/null
	2451	fi
[82]	2452
	2453	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2454
[1]	2455	else
[475]	2456
[1]	2457	cp $executable ${TEMPDIR}/a.out
[475]	2458
[1]	2459	fi
	2460
	2461
	2462	# WECHSEL IN TEMPORAEREN KATALOG
[475]	2463	cd $TEMPDIR
[1]	2464	printf "\n *** changed to temporary directory: $TEMPDIR"
	2465
	2466
	2467	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2468	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2469	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2470	# ERMITTELN
	2471	(( i = 0 ))
	2472	while (( i < iout ))
	2473	do
	2474	(( i = i + 1 ))
	2475	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2476	then
	2477	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2478	else
	2479	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2480	fi
	2481	done
	2482
	2483
	2484	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2485	if [[ $do_compile = true ]]
	2486	then
	2487
	2488
	2489	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2490	printf "\n\n\n *** compilation starts \n$striche\n"
	2491	printf " *** compilation with make using following options:\n"
[211]	2492	printf " make depository: $make_depository"
[475]	2493	if [[ "$mopts" != "" ]]
	2494	then
	2495	printf " make options: $mopts\n"
	2496	fi
[82]	2497	printf " compilername: $compiler_name\n"
[475]	2498	printf " compiler options: $fopts\n"
[493]	2499	printf " preprocessor directives: $cpp_options \n"
	2500	printf " linker options: $lopts \n"
	2501	if [[ "$modules" != "" ]]
	2502	then
	2503	printf " modules to be load: $modules \n"
	2504	fi
[82]	2505	printf " source code files: $source_list \n"
	2506
	2507	if [[ $localhost = nech ]]
[1]	2508	then
[493]	2509	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[82]	2510	cp $TEMPDIR_COMPILE/a.out .
	2511	[[ $? != 0 ]] && compile_error=true
	2512	rm -rf $TEMPDIR_COMPILE
[312]	2513	elif [[ $localhost = ibmh ]]
	2514	then
[325]	2515	printf " compiler is called via ssh on \"plogin1\" \n"
[493]	2516	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[312]	2517	[[ ! -f a.out ]] && compile_error=true
	2518	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[197]	2519	elif [[ $localhost = lcsgib ]]
	2520	then
[540]	2521	printf " compiler is called via ssh on \"bicegate0\" \n"
	2522	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2523	[[ ! -f a.out ]] && compile_error=true
	2524	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2525	elif [[ $localhost = lcsgih ]]
	2526	then
[592]	2527	printf " compiler is called via ssh on \"hicegate0\" \n"
	2528	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2529	[[ ! -f a.out ]] && compile_error=true
	2530	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2531	else
[544]	2532	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
[493]	2533	[[ "$module_calls" != "" ]] && eval $module_calls
[475]	2534	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
[82]	2535	fi
[1]	2536
	2537	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2538	then
	2539	printf "\n +++ error occured while compiling or linking"
	2540	locat=compile
[181]	2541
[182]	2542	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2543	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2544	# then
[181]	2545	exit
[197]	2546	# else
	2547	# locat=normal
	2548	# fi
[1]	2549	else
	2550	printf "$striche\n *** compilation finished \n"
	2551	fi
	2552	fi
	2553
	2554
	2555	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2556	if [[ $local_compile = true ]]
	2557	then
	2558	cd $HOME
	2559	rm -rf $TEMPDIR
	2560	locat=local_compile; exit
	2561	fi
	2562
	2563
	2564	# BEREITSTELLEN DER INPUT-DATEIEN
	2565	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2566	(( i = 0 ))
	2567	while (( i < iin ))
	2568	do
	2569	(( i = i + 1 ))
	2570	if (( i == 1 ))
	2571	then
	2572	printf "\n\n *** providing INPUT-files:\n$striche"
	2573	fi
	2574
	2575
	2576	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2577	if [[ "${transin[$i]}" = unavailable ]]
	2578	then
	2579	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2580	then
	2581	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2582	printf "\n is not available!"
	2583	else
	2584	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2585	printf "\n is not available!"
	2586	fi
	2587	continue
	2588	fi
	2589
	2590	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2591	files_for_pes=false; datentyp=file
	2592	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2593	then
	2594	files_for_pes=true; datentyp=directory
	2595	actionin[$i]=""
	2596	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2597	then
	2598	actionin[$i]=""
	2599	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2600	then
	2601	files_for_pes=true; datentyp=directory
	2602	actionin[$i]="ar"
	2603	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2604	then
	2605	actionin[$i]="ar"
	2606	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2607	then
	2608	files_for_pes=true; datentyp=directory
	2609	actionin[$i]="fl"
	2610	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2611	then
	2612	actionin[$i]="fl"
	2613	fi
	2614
	2615	if [[ $files_for_pes = true ]]
	2616	then
	2617	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2618	else
	2619	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2620	fi
	2621
	2622	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2623	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2624	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2625	# SERVER ZU HOLEN
	2626	if [[ "${actionin[$i]}" = fl ]]
	2627	then
	2628	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2629	if [[ $files_for_pes = false ]]
	2630	then
	2631	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2632	then
	2633	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2634	got_tmp[$i]=true
	2635	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2636	then
	2637	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2638	printf "\n *** trying to use backup copy in \"$WORK\" "
	2639	cp $WORK/${frelin[$i]} ${localin[$i]}
	2640	else
	2641	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2642	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2643	printf "\n *** trying to get copy from archive"
	2644	actionin[$i]=ar
	2645	fi
	2646	else
	2647	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2648	then
	2649	mkdir ${localin[$i]}
[149]	2650	cd $tmp_data_catalog/${frelin[$i]}
	2651	for file in $(ls *)
	2652	do
	2653	ln $file $TEMPDIR/${localin[$i]}
	2654	done
	2655	cd $TEMPDIR
[1]	2656	got_tmp[$i]=true
	2657	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2658	then
	2659	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2660	printf "\n *** trying to use backup copy in \"$WORK\" "
	2661	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2662	else
	2663	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2664	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2665	printf "\n *** trying to get copy from archive"
	2666	actionin[$i]=ar
	2667	fi
	2668	fi
	2669	fi
	2670
	2671
	2672	# DATEI LIEGT AUF ARCHIV-SERVER
	2673	if [[ "${actionin[$i]}" = ar ]]
	2674	then
	2675
	2676	if [[ $files_for_pes = false ]]
	2677	then
	2678	printf "\n file will be restored from archive-system ($archive_system)!"
	2679	else
	2680	printf "\n directory will be restored from archive-system ($archive_system)!"
	2681	fi
	2682
	2683	file_restored=false
	2684
	2685	if [[ $archive_system = asterix ]]
	2686	then
	2687	do_stagein=true
	2688	(( stagein_anz = 0 ))
	2689	while [[ $do_stagein = true ]]
	2690	do
	2691	if [[ $files_for_pes = false ]]
	2692	then
	2693	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2694	else
	2695	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2696	fi
	2697	cat STAGEIN_OUTPUT
	2698	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2699	then
	2700	file_restored=true
	2701	do_stagein=false
	2702	else
	2703	(( stagein_anz = stagein_anz + 1 ))
	2704	if (( stagein_anz == 10 ))
	2705	then
	2706	printf "\n +++ stagein stoped after 10 tries"
	2707	locat=stage
	2708	exit
	2709	fi
	2710	printf "\n +++ restoring from archive failed, trying again:"
	2711	sleep 900
	2712	fi
	2713	done
	2714	elif [[ $archive_system = DMF ]]
	2715	then
	2716	if [[ $files_for_pes = false ]]
	2717	then
	2718	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	2719	locat=DMF
	2720	exit
	2721	else
	2722	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	2723	cp -r $ARCHIVE/${frelin[$i]} $PWD
	2724	file_restored=true
	2725	fi
	2726	elif [[ $archive_system = tivoli ]]
	2727	then
	2728	if [[ $files_for_pes = false ]]
	2729	then
[399]	2730	if [[ $localhost = lcsgih ]]
[1]	2731	then
[399]	2732	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2733	else
[399]	2734	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2735	fi
	2736	else
	2737	(( inode = 0 ))
	2738	while (( inode < nodes ))
	2739	do
[399]	2740	if [[ $localhost = lcsgih ]]
[1]	2741	then
[399]	2742	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2743	else
[399]	2744	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2745	fi
	2746	(( inode = inode + 1 ))
	2747	done
	2748	fi
	2749	file_restored=true
	2750	elif [[ $archive_system = ut ]]
	2751	then
	2752	if [[ $files_for_pes = false ]]
	2753	then
	2754	cp $UT/${frelin[$i]} .
	2755	else
	2756	(( inode = 0 ))
	2757	while (( inode < nodes ))
	2758	do
	2759	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	2760	(( inode = inode + 1 ))
	2761	done
	2762	fi
	2763	file_restored=true
	2764	else
	2765	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	2766	locat=rearchive
	2767	exit
	2768	fi
	2769
	2770	if [[ $file_restored = true ]]
	2771	then
	2772
	2773	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	2774	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	2775	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	2776	if [[ $files_for_pes = false ]]
	2777	then
	2778	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	2779	else
	2780	mkdir $tmp_data_catalog/${frelin[$i]}
	2781	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	2782	fi
	2783	got_tmp[$i]=true
	2784
	2785	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	2786	mv ${frelin[$i]} ${localin[$i]}
	2787
	2788	fi
	2789	fi
	2790
	2791
	2792	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	2793	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	2794	then
	2795
	2796	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	2797	then
	2798
	2799	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	2800	printf "\n file will be provided for $numprocs processors"
	2801	mkdir ${localin[$i]}
	2802	ival=$numprocs
	2803	(( ii = 0 ))
	2804	while (( ii <= ival-1 ))
	2805	do
	2806	if (( ii < 10 ))
	2807	then
	2808	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	2809	elif (( ii < 100 ))
	2810	then
	2811	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	2812	elif (( ii < 1000 ))
	2813	then
	2814	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	2815	else
	2816	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	2817	fi
	2818	(( ii = ii + 1 ))
	2819	done
	2820
	2821	else
	2822
	2823	if [[ $files_for_pes = true ]]
	2824	then
	2825
	2826	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	2827	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	2828	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	2829	# PER MOVE UMBENANNT WERDEN
	2830	printf "\n providing $numprocs files for the respective processors"
	2831	mkdir ${localin[$i]}
[183]	2832	if [[ $link_local_input = true ]]
	2833	then
	2834	printf " using ln -f\n"
	2835	cd ${absnamein[$i]}
	2836	for file in $(ls *)
	2837	do
	2838	ln -f $file ${localin[$i]}
	2839	done
	2840	cd $TEMPDIR
	2841	fi
	2842	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	2843	if [[ ! -f "${localin[$i]}/_0000" ]]
	2844	then
	2845	if [[ $link_local_input = true ]]
	2846	then
	2847	printf " ln failed for .../_0000, using cp...\n"
	2848	fi
	2849	cp -r ${absnamein[$i]}/* ${localin[$i]}
	2850	fi
[1]	2851
	2852	else
	2853	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	2854	if [[ $link_local_input = true ]]
	2855	then
	2856	printf " using ln -f\n"
	2857	ln -f ${absnamein[$i]} ${localin[$i]}
	2858	fi
	2859	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	2860	if [[ ! -f "${localin[$i]}" ]]
	2861	then
	2862	if [[ $link_local_input = true ]]
	2863	then
	2864	printf " ln failed, using cp...\n"
	2865	fi
	2866	cp ${absnamein[$i]} ${localin[$i]}
	2867	fi
[1]	2868	fi
	2869	fi
	2870	fi
	2871
	2872	done
	2873	if (( i != 0 ))
	2874	then
	2875	printf "\n$striche\n *** all INPUT-files provided \n"
	2876	fi
	2877
	2878
	2879	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	2880	(( i = 0 ))
	2881	while (( i < iic ))
	2882	do
	2883	(( i = i + 1 ))
	2884	if (( i == 1 ))
	2885	then
	2886	printf "\n\n *** execution of INPUT-commands:\n$striche"
	2887	fi
	2888	printf "\n >>> ${in_command[$i]}"
	2889	eval ${in_command[$i]}
	2890	if (( i == iic ))
	2891	then
	2892	printf "\n$striche\n"
	2893	fi
	2894	done
	2895
	2896
	2897	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	2898	cpurest=${cpumax}.
	2899
	2900
[260]	2901	# START DVR STREAMING SERVER
	2902	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	2903	then
	2904	if [[ "$dvr_server" != "" ]]
	2905	then
	2906
	2907	printf "\n\n *** preparing the dvr streaming server configuration file"
	2908
	2909	# Check, if a dvr server is already running
	2910	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	2911	if [[ "$running_dvrserver_id" != "" ]]
	2912	then
	2913
[261]	2914	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	2915	printf "\n This server is used instead starting a new one!"
[261]	2916	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	2917
	2918	else
	2919
	2920	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	2921	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	2922	then
	2923	cp ${PALM_BIN}/.dvrserver.config .
	2924
	2925	# Entering the BASEDIR, UID and GID into this file
	2926	user_id=`id -u`
	2927	group_id=`id -g`
	2928	# & is needed as seperator, because TEMPDIR contains /
	2929	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	2930	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	2931	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	2932	mv .dvrserver.3 .dvrserver.config
	2933	rm .dvrserver.1 .dvrserver.2
	2934
	2935	# Start dvr server in background, get his id and print on terminal
	2936	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	2937	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	2938	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	2939	local_dvrserver_running=.TRUE.
	2940	else
	2941	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	2942	printf "\n \"$PALM_BIN\" "
	2943	locat=dvr
	2944	exit
	2945	fi
	2946
	2947	fi
	2948
	2949	else
	2950	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	2951	fi
	2952	fi
	2953
	2954
	2955	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	2956	# LESEN VON PALM)
	2957	cat > ENVPAR << %%END%%
	2958	&envpar run_identifier = '$fname', host = '$localhost',
	2959	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2960	maximum_cpu_time_allowed = ${cpumax}.,
	2961	revision = '$global_revision',
	2962	local_dvrserver_running = $local_dvrserver_running /
	2963
	2964	%%END%%
	2965
	2966
[1]	2967	# PROGRAMMSTART
	2968	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	2969	PATH=$PATH:$TEMPDIR
	2970
[359]	2971	# MPI debug option (argument checking, slows down execution due to increased latency)
	2972	if [[ "$mpi_debug" = true ]]
	2973	then
	2974	export MPI_CHECK_ARGS=1
	2975	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	2976	fi
	2977
[1]	2978	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	2979	then
	2980	if [[ "$ENVIRONMENT" = BATCH ]]
	2981	then
[211]	2982	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	2983	then
	2984	printf "\n +++ debug is allowed in interactive mode only"
	2985	locat=debug
	2986	exit
	2987	fi
[1]	2988	fi
[5]	2989	if [[ $localhost = decalpha ]]
[1]	2990	then
	2991	dxladebug a.out
[622]	2992	elif [[ $localhost = ibmh ]]
[1]	2993	then
	2994
	2995	# SETUP THE IBM MPI ENVIRONMENT
	2996	export MP_SHARED_MEMORY=yes
	2997	export AIXTHREADS_SCOPE=S
	2998	export OMP_NUM_THREADS=$threads_per_task
	2999	export AUTHSTATE=files
	3000	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3001
	3002	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	3003	export MP_ADAPTER_USE=shared
	3004	export MP_CPU_USE=multiple
	3005	export MP_TIMEOUT=1200
	3006
	3007	unset MP_TASK_AFFINITY
	3008
	3009	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	3010	#(( ii = 1 ))
	3011	#while (( ii <= $numprocs ))
	3012	#do
	3013	# echo $localhost_realname >> hostfile
	3014	# (( ii = ii + 1 ))
	3015	#done
	3016	#export MP_HOSTFILE=hostfile
	3017
	3018	if [[ "$LOADLBATCH" = yes ]]
	3019	then
	3020	totalview poe a.out $ROPTS
	3021	else
	3022	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3023	export TVDSVRLAUNCHCMD=ssh
	3024	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3025	fi
[211]	3026	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	3027	then
	3028	# CURRENTLY NO DEBUGGER ON LCSGI
	3029	if [[ $run_coupled_model = true ]]
	3030	then
	3031	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	3032	locat=debug
	3033	exit
[223]	3034	else
	3035	echo "no_coupling" > runfile_atmos
[211]	3036	fi
	3037	(( ii = $numprocs / $threads_per_task ))
	3038	export OMP_NUM_THREADS=$threads_per_task
	3039	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3040	if [[ $threads_per_task != 1 ]]
	3041	then
	3042	printf "\n threads per task: $threads_per_task"
	3043	fi
	3044	printf "\n\n"
[223]	3045	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3046	then
	3047	# export MPI_LAUNCH_TIMEOUT=360
	3048	if [[ "$totalview" = true ]]
	3049	then
	3050	printf "\n running totalview debugger"
	3051	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
	3052	else
	3053	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3054	fi
	3055	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3056	then
	3057	# ulimit -s 300000 # A too large stack size causes problems
	3058	# export MV2_NUM_PORTS=2
	3059	# export MV2_CPU_MAPPING=0:1:2:3
[362]	3060	if [[ "$totalview" = true ]]
	3061	then
	3062	printf "\n running totalview debugger"
	3063	mpiexec -tv ./a.out $ROPTS < runfile_atmos
	3064	else
	3065	mpiexec ./a.out $ROPTS < runfile_atmos
	3066	fi
[223]	3067	fi
[1]	3068	else
	3069	printf "\n +++ no debug available on \"$localhost\" "
	3070	printf "\n or not implemented in mrun so far"
	3071	locat=debug
	3072	exit
	3073	fi
[622]	3074
	3075	# end debug mode
[1]	3076	else
[622]	3077
	3078	# normal execution
[1]	3079	if [[ -n $numprocs ]]
	3080	then
	3081	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	3082	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	3083	then
	3084	# SETUP THE IBM MPI ENVIRONMENT
[312]	3085	if [[ $host != ibmh ]]
	3086	then
	3087	export MP_SHARED_MEMORY=yes
	3088	export AIXTHREAD_SCOPE=S
	3089	export OMP_NUM_THREADS=$threads_per_task
	3090	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	3091	export AUTHSTATE=files
	3092	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3093	# export MP_PRINTENV=yes
[1]	3094
[312]	3095	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	3096	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	3097	export MP_WAIT_MODE=poll
	3098	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	3099	fi
[1]	3100	if [[ "$LOADLBATCH" = yes ]]
	3101	then
	3102	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	3103	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3104	then
[102]	3105	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3106	else
[343]	3107	if [[ $run_coupled_model = false ]]
	3108	then
	3109	if [[ "$ocean_file_appendix" = true ]]
	3110	then
	3111	echo "precursor_ocean" > runfile_atmos
	3112	else
	3113	echo "precursor_atmos" > runfile_atmos
	3114	fi
	3115	else
	3116	(( iia = $numprocs_atmos / $threads_per_task ))
	3117	(( iio = $numprocs_ocean / $threads_per_task ))
	3118	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3119	printf "\n using $coupled_mode coupling"
	3120	printf "\n\n"
	3121	echo "coupled_run $iia $iio" > runfile_atmos
	3122	fi
	3123	poe ./a.out $ROPTS < runfile_atmos
[1]	3124	fi
	3125	else
[622]	3126	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
[1]	3127	then
[102]	3128	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[622]	3129	elif [[ $localhost = ibmku \|\| $localhost = ibmy ]]
[1]	3130	then
	3131	if [[ -f $hostfile ]]
	3132	then
	3133	cp $hostfile hostfile
	3134	else
	3135	(( ii = 1 ))
	3136	while (( ii <= $numprocs ))
	3137	do
	3138	echo $localhost_realname >> hostfile
	3139	(( ii = ii + 1 ))
	3140	done
	3141	fi
	3142	export MP_HOSTFILE=hostfile
[331]	3143	if [[ $run_coupled_model = false ]]
	3144	then
	3145	if [[ "$ocean_file_appendix" = true ]]
	3146	then
	3147	echo "precursor_ocean" > runfile_atmos
	3148	else
	3149	echo "precursor_atmos" > runfile_atmos
	3150	fi
	3151	else
	3152	(( iia = $numprocs_atmos / $threads_per_task ))
	3153	(( iio = $numprocs_ocean / $threads_per_task ))
	3154	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3155	printf "\n using $coupled_mode coupling"
	3156	printf "\n\n"
	3157	echo "coupled_run $iia $iio" > runfile_atmos
	3158	fi
[622]	3159	if [[ $localhost = ibmy ]]
	3160	then
	3161	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3162	else
	3163	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
	3164	fi
[331]	3165
[1]	3166	else
	3167	if [[ "$host_file" = "" ]]
	3168	then
	3169	printf "\n +++ no hostfile given in configuration file"
	3170	locat=config_file
	3171	exit
	3172	else
	3173	eval host_file=$host_file
	3174	fi
	3175	export MP_HOSTFILE=$host_file
[102]	3176	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3177	fi
	3178	fi
[251]	3179	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3180	then
	3181	(( ii = nodes ))
	3182	if [[ $ii = 1 ]]
	3183	then
	3184	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3185	export MPIPROGINF=YES
[61]	3186	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3187	echo "*** execution on single node with mpirun"
[102]	3188	mpirun -np $numprocs ./a.out $ROPTS
[1]	3189	else
	3190	(( i = 0 ))
	3191	while (( i < ii ))
	3192	do
	3193	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3194	(( i = i + 1 ))
	3195	done
	3196
	3197	echo "#!/bin/sh" > mpi_exec_shell
	3198	echo " " >> mpi_exec_shell
	3199	echo "set -u" >> mpi_exec_shell
	3200	echo "F_ERRCNT=0" >> mpi_exec_shell
	3201	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3202	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3203	echo "cpurest=$cpurest" >> mpi_exec_shell
	3204	echo "fname=$fname" >> mpi_exec_shell
	3205	echo "localhost=$localhost" >> mpi_exec_shell
	3206	echo "return_addres=$return_addres" >> mpi_exec_shell
	3207	echo "return_username=$return_username" >> mpi_exec_shell
	3208	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3209	echo "write_binary=$write_binary" >> mpi_exec_shell
	3210	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3211	echo " " >> mpi_exec_shell
	3212	echo "export F_ERRCNT" >> mpi_exec_shell
	3213	echo "export MPIPROGINV" >> mpi_exec_shell
	3214	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3215	echo "export cpurest" >> mpi_exec_shell
	3216	echo "export fname" >> mpi_exec_shell
	3217	echo "export localhost" >> mpi_exec_shell
	3218	echo "export return_addres" >> mpi_exec_shell
	3219	echo "export return_username" >> mpi_exec_shell
	3220	echo "export tasks_per_node" >> mpi_exec_shell
	3221	echo "export write_binary" >> mpi_exec_shell
	3222	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3223	echo " " >> mpi_exec_shell
[102]	3224	echo "exec ./a.out" >> mpi_exec_shell
[1]	3225
	3226	chmod u+x mpi_exec_shell
	3227	export MPIPROGINF=YES
	3228	mpirun -f multinode_config &
	3229	wait
	3230
	3231	fi
[440]	3232	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
[1]	3233	then
	3234
	3235	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3236	# DOES NOT EXIST
[179]	3237	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	3238	then
[179]	3239	if [[ -f $hostfile ]]
	3240	then
	3241	cp $hostfile hostfile
	3242	else
	3243	(( ii = 1 ))
	3244	while (( ii <= $numprocs / $threads_per_task ))
	3245	do
	3246	echo $localhost_realname >> hostfile
	3247	(( ii = ii + 1 ))
	3248	done
	3249	fi
	3250	eval zeile=\"`head -n $ii hostfile`\"
	3251	printf "\n *** running on: $zeile"
[1]	3252	fi
[179]	3253
[1]	3254	(( ii = $numprocs / $threads_per_task ))
	3255	export OMP_NUM_THREADS=$threads_per_task
[246]	3256	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3257	if [[ $threads_per_task != 1 ]]
	3258	then
[405]	3259	# increase stack size to unlimited, because large runs
	3260	# may abort otherwise
	3261	ulimit -Ss unlimited
	3262	printf "\n threads per task: $threads_per_task stacksize: unlimited"
[1]	3263	fi
[102]	3264	if [[ $run_coupled_model = false ]]
[1]	3265	then
[291]	3266	if [[ "$ocean_file_appendix" = true ]]
	3267	then
	3268	echo "precursor_ocean" > runfile_atmos
	3269	else
	3270	echo "precursor_atmos" > runfile_atmos
	3271	fi
[102]	3272	printf "\n\n"
[179]	3273	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3274	then
[221]	3275	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3276	then
[366]	3277	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
	3278	# export MPI_DSM_DISTRIBUTE=1
	3279	# MPI_DSM_CPULIST: pin MPI processes to cores
[377]	3280	if [[ $use_openmp = false ]]
	3281	then
[412]	3282	if [[ "$sgi_feature" = ice2 ]]
	3283	then
	3284	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
	3285	else
	3286	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
	3287	fi
[622]	3288	else
	3289	unset MPI_DSM_CPULIST
[377]	3290	fi
[366]	3291	# MPI_IB_RAILS: use both IB rails on ICE2
	3292	export MPI_BUFS_PER_HOST=512
	3293	export MPI_IB_RAILS=2
[369]	3294	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
	3295	export MPI_CONNECTIONS_THRESHOLD=8192
[412]	3296	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
[562]	3297	export MPI_TYPE_DEPTH=20
	3298	echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
[223]	3299	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
[388]	3300
	3301	# next is test for openmp usage
[622]	3302	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
	3303	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
[221]	3304	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3305	then
[374]	3306	export MV2_NUM_PORTS=2
[376]	3307	# The default setting of MV2_CPU_MAPPING gives best results
[405]	3308	# export MV2_ENABLE_AFFINITY=1
[376]	3309	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
[412]	3310	# if [[ "$sgi_feature" = ice2 ]]
	3311	# then
	3312	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
	3313	# else
	3314	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
	3315	# fi
[622]	3316	[[ $use_openmp = true ]] && unset MV2_CPU_MAPPING
[412]	3317	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
[622]	3318	if [[ $use_openmp = true ]]
[405]	3319	then
[622]	3320	mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
[405]	3321	else
	3322	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
	3323	fi
[221]	3324	fi
[437]	3325	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[179]	3326	then
[544]	3327	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[164]	3328	else
[223]	3329	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3330	fi
[1]	3331	else
[164]	3332
[206]	3333	# currently there is no full MPI-2 support on ICE and XT4
	3334	(( iia = $numprocs_atmos / $threads_per_task ))
	3335	(( iio = $numprocs_ocean / $threads_per_task ))
	3336	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3337	printf "\n using $coupled_mode coupling"
[102]	3338	printf "\n\n"
[164]	3339
[206]	3340	if [[ $coupled_mode = "mpi2" ]]
[164]	3341	then
[206]	3342	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3343	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3344	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3345	then
[197]	3346
[221]	3347	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3348	then
	3349	# export MPI_LAUNCH_TIMEOUT=360
	3350	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3351	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3352	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3353	then
	3354	# ulimit -s 300000 # A too large stack size causes problems
	3355	# export MV2_NUM_PORTS=2
	3356	# export MV2_CPU_MAPPING=0:1:2:3
	3357	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3358	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3359	fi
[197]	3360
[437]	3361	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[206]	3362	then
[197]	3363
[206]	3364	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3365	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3366
	3367	else
	3368	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3369	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3370	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3371	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3372	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3373	fi
	3374	wait
	3375
[164]	3376	else
	3377
[206]	3378	echo "coupled_run $iia $iio" > runfile_atmos
	3379	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3380	then
	3381
[221]	3382	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3383	then
	3384	# export MPI_LAUNCH_TIMEOUT=360
	3385	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3386	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3387	then
	3388	# ulimit -s 300000 # A too large stack size causes problems
	3389	# export MV2_NUM_PORTS=2
	3390	# export MV2_CPU_MAPPING=0:1:2:3
	3391	mpiexec ./a.out $ROPTS < runfile_atmos
	3392	fi
[206]	3393
[437]	3394	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[206]	3395	then
	3396
	3397	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3398
[367]	3399	elif [[ $host = lck ]]
	3400	then
	3401	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
[206]	3402	fi
	3403	wait
[164]	3404	fi
[102]	3405
[206]	3406	fi
[1]	3407	elif [[ $host = decalpha ]]
	3408	then
[102]	3409	dmpirun -np $numprocs a.out $ROPTS
[440]	3410	elif [[ $host = lckyoto ]]
	3411	then
	3412	set -xv
	3413	export P4_RSHCOMMAND=plesh
	3414	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
	3415	if [[ "$ENVIRONMENT" = BATCH ]]
	3416	then
[505]	3417	if [[ "$cond2" = fujitsu ]]
	3418	then
	3419	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
	3420	elif [[ "cond2" = pgi ]]
	3421	then
	3422	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
	3423	else
	3424	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
	3425	fi
[440]	3426	else
[505]	3427	if [[ "$cond2" = "" ]]
	3428	then
	3429	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
	3430	else
	3431	mpirun -np $numprocs ./a.out $ROPTS
	3432	fi
[440]	3433	fi
	3434	set +xv
[1]	3435	elif [[ $host = lctit ]]
	3436	then
[635]	3437	mpirun -np $numprocs -hostfile $PBS_NODEFILE ./a.out $ROPTS
[1]	3438	else
[102]	3439	mpprun -n $numprocs a.out $ROPTS
[1]	3440	fi
	3441	[[ $? != 0 ]] && execution_error=true
	3442
	3443
	3444	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3445	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3446	then
	3447	apprentice
	3448	fi
	3449	else
[102]	3450	a.out $ROPTS
[1]	3451	fi
	3452	fi
	3453	if [[ $? != 0 \|\| $execution_error = true ]]
	3454	then
	3455
	3456	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3457	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3458	printf "\n +++ runtime error occured"
	3459	locat=execution
	3460	exit
	3461	else
[102]	3462	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3463	printf "\n$striche\n *** execution finished \n"
[260]	3464
[261]	3465	# Stop the dvr streaming server and process the dvr output in order
	3466	# to create dvrs- and html-files containing all streams
[260]	3467	if [[ "$dvrserver_id" != "" ]]
	3468	then
	3469	kill $dvrserver_id
	3470	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3471
[262]	3472	# If there is a directory, data have been output by the
	3473	# streaming server. Otherwise, user has chosen dvrp_output=local
	3474	if [[ -d DATA_DVR ]]
	3475	then
[261]	3476
[262]	3477	# Add the current dvr configuration file to the dvr output
	3478	# directory
	3479	cp .dvrserver.config DATA_DVR
	3480
	3481	# Process the dvr output (option -s for also generating
	3482	# sequence mode data)
	3483	process_dvr_output -d DATA_DVR -f $fname -s
	3484
	3485	else
	3486
	3487	# Process the local output
	3488	process_dvr_output -l -d DATA_DVR -f $fname
	3489
	3490	fi
	3491
	3492	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3493	then
	3494
	3495	# Process dvr output generated in local mode (dvrp_output=local)
	3496	process_dvr_output -l -d DATA_DVR -f $fname
	3497
[260]	3498	fi
[1]	3499	fi
	3500
	3501
	3502
[503]	3503	# Call of combine_plot_fields in order to merge single files written
	3504	# by each PE into one file.
	3505	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
	3506	then
	3507	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
	3508	printf "\n 2d- and/or 3d-data may be incomplete!"
	3509	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
	3510	else
	3511	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
	3512	combine_plot_fields${block}.x
	3513	fi
	3514
	3515
	3516
[1]	3517	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3518	(( i = 0 ))
	3519	while (( i < ioc ))
	3520	do
	3521	(( i = i + 1 ))
	3522	if (( i == 1 ))
	3523	then
	3524	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3525	fi
	3526	printf "\n >>> ${out_command[$i]}"
	3527	eval ${out_command[$i]}
	3528	if (( i == ioc ))
	3529	then
	3530	printf "\n$striche\n"
	3531	fi
	3532	done
	3533
	3534
	3535	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3536	if [[ $do_trace = true ]]
	3537	then
	3538	printf "\n\n"
	3539	ls -al
	3540	fi
	3541
	3542
	3543
	3544	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3545	(( i = 0 ))
	3546	while (( i < iout ))
	3547	do
	3548	(( i = i + 1 ))
	3549	if (( i == 1 ))
	3550	then
	3551	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3552	fi
	3553
	3554	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3555	files_for_pes=false; filetyp=file
	3556	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3557	then
	3558	files_for_pes=true; filetyp=directory
	3559	actionout[$i]=""
	3560	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3561	then
	3562	actionout[$i]=""
	3563	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3564	then
	3565	files_for_pes=true; filetyp=directory
	3566	actionout[$i]="ar"
	3567	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3568	then
	3569	actionout[$i]="ar"
	3570	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3571	then
	3572	files_for_pes=true; filetyp=directory
	3573	actionout[$i]="fl"
	3574	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3575	then
	3576	actionout[$i]="fl"
	3577	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3578	then
	3579	files_for_pes=true; filetyp=directory
	3580	actionout[$i]="tr"
	3581	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3582	then
	3583	actionout[$i]="tr"
	3584	fi
	3585
	3586	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3587	then
	3588	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3589	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3590	then
	3591	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3592	else
	3593
	3594
	3595	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3596	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3597	# REMOTE-RECHNUNGEN
	3598	if [[ "${actionout[$i]}" = tr ]]
	3599	then
	3600	if [[ $localhost != $fromhost ]]
	3601	then
	3602	if [[ $files_for_pes = false ]]
	3603	then
	3604	cps=""
	3605	cst=""
	3606	else
	3607	cps=-c
	3608	cst="/"
	3609	fi
[622]	3610	if [[ $localhost = nech ]]
[1]	3611	then
	3612
	3613	# TRANSFER IN EIGENSTAENDIGEM JOB
	3614	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3615	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3616	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3617	if [[ $files_for_pes = false ]]
	3618	then
	3619	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3620	else
	3621	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3622	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3623	fi
	3624
	3625	echo "set -x" > transfer_${localout[$i]}
	3626	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3627
	3628	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	3629	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	3630	printf "\n or higher cycle\n"
	3631	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3632
[1]	3633	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3634
	3635	if [[ $localhost = nech ]]
	3636	then
[82]	3637	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3638	else
	3639	if [[ "$LOGNAME" = b323013 ]]
	3640	then
[164]	3641	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3642	else
[164]	3643	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3644	fi
	3645	fi
	3646
	3647	else
	3648
	3649	# TRANSFER INNERHALB DIESES JOBS
	3650	transfer_failed=false
[82]	3651	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	3652	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	3653	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3654	[[ $? != 0 ]] && transfer_failed=true
[1]	3655
	3656	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3657	# LOKALER MASCHINE ANLEGEN
	3658	if [[ $transfer_failed = true ]]
	3659	then
	3660	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3661	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3662
	3663	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3664	# ANLEGEN.
	3665	eval local_catalog=${pathout[$i]}
	3666	if [[ ! -d $local_catalog ]]
	3667	then
	3668	printf " *** local directory does not exist. Trying to create:\n"
	3669	printf " $local_catalog \n"
	3670	mkdir -p $local_catalog
	3671	fi
	3672	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3673	transfer_problems=true
	3674	fi
	3675	fi
	3676	else
	3677
	3678	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	3679	actionout[$i]=""
	3680	fi
	3681	fi
	3682
	3683
	3684	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3685	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3686	# REMOTE-RECHNUNGEN
	3687	if [[ "${actionout[$i]}" = tra ]]
	3688	then
	3689	if [[ $localhost != $fromhost ]]
	3690	then
[622]	3691	if [[ $localhost = ibmh \|\| $localhost = nech ]]
[1]	3692	then
	3693
	3694	# TRANSFER IN EIGENSTAENDIGEM JOB
	3695	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3696	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3697	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3698	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3699
	3700	echo "set -x" > transfer_${localout[$i]}
	3701	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3702
	3703	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	3704	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	3705	printf "\n or higher cycle\n"
	3706	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3707
[1]	3708	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3709
	3710	if [[ $localhost = nech ]]
	3711	then
[82]	3712	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3713	else
	3714	if [[ $LOGNAME = b323013 ]]
	3715	then
[164]	3716	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3717	else
[164]	3718	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3719	fi
	3720	fi
	3721
	3722	else
	3723
	3724	# TRANSFER INNERHALB DIESES JOBS
	3725	transfer_failed=false
[82]	3726	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	3727	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	3728	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3729	[[ $? != 0 ]] && transfer_failed=true
[1]	3730
	3731	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3732	# LOKALER MASCHINE ANLEGEN
	3733	if [[ $transfer_failed = true ]]
	3734	then
	3735	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3736	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3737
	3738	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3739	# ANLEGEN
	3740	eval local_catalog=${pathout[$i]}
	3741	if [[ ! -d $local_catalog ]]
	3742	then
	3743	printf " *** local directory does not exist. Trying to create:\n"
	3744	printf " $local_catalog \n"
	3745	mkdir -p $local_catalog
	3746	fi
	3747
	3748	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3749	transfer_problems=true
	3750	fi
	3751	fi
	3752	else
	3753
	3754	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	3755	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	3756	actionout[$i]=a
	3757	fi
	3758	fi
	3759
	3760
	3761	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	3762	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	3763	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	3764	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	3765	if [[ "${actionout[$i]}" = fl ]]
	3766	then
	3767	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3768	chmod g+rx $tmp_data_catalog
	3769	if [[ $files_for_pes = false ]]
	3770	then
	3771	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3772	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3773	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	3774	else
	3775	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	3776	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3777	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	3778	cd ${localout[$i]}
	3779	for file in $(ls *)
	3780	do
	3781	ln -f $file $tmp_data_catalog/${frelout[$i]}
	3782	done
	3783	cd $TEMPDIR
[1]	3784	fi
	3785
	3786
	3787	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	3788	if [[ $store_on_archive_system = true ]]
	3789	then
	3790
	3791	if [[ $archive_system = asterix ]]
	3792	then
	3793	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3794	if [[ $files_for_pes = false ]]
	3795	then
	3796	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3797	else
	3798	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3799	fi
	3800	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3801	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	3802	echo "then" >> archive_${frelout[$i]}
	3803	echo " do_stageout=false" >> archive_${frelout[$i]}
	3804	echo "else" >> archive_${frelout[$i]}
	3805	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	3806	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	3807	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	3808	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	3809	if [[ $files_for_pes = false ]]
	3810	then
	3811	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	3812	else
	3813	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	3814	fi
	3815	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	3816	echo "fi" >> archive_${frelout[$i]}
	3817	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3818	elif [[ $archive_system = DMF ]]
	3819	then
	3820	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3821	if [[ $files_for_pes = false ]]
	3822	then
	3823	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	3824	locat=DMF
	3825	exit
	3826	else
	3827	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	3828	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	3829	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	3830	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	3831	fi
	3832	elif [[ $archive_system = tivoli ]]
	3833	then
	3834	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3835	if [[ $files_for_pes = false ]]
	3836	then
	3837	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3838	echo "set -x" >> archive_${frelout[$i]}
	3839	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3840	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3841	else
	3842
	3843	echo "set -x" >> archive_${frelout[$i]}
	3844	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3845	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3846	cd $tmp_data_catalog
	3847	all_files=`ls -1 ${frelout[$i]}/*`
	3848	cd - > /dev/null
	3849	(( inode = 0 ))
	3850	(( tp1 = tasks_per_node + 1 ))
	3851	while (( inode < nodes ))
	3852	do
	3853	# echo "*** all_files = \"$all_files\" "
	3854	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3855	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3856	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	3857	# echo "*** files = \"$files\" "
	3858	# echo "*** all_files = \"$all_files\" "
[416]	3859	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3860	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3861	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
	3862	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[397]	3863	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3864	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[1]	3865	(( inode = inode + 1 ))
	3866	done
	3867	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3868	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3869	fi
	3870	elif [[ $archive_system = ut ]]
	3871	then
	3872	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3873	if [[ $files_for_pes = false ]]
	3874	then
	3875	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3876	echo "set -x" >> archive_${frelout[$i]}
	3877	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3878	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3879	else
	3880
	3881	echo "set -x" >> archive_${frelout[$i]}
	3882	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3883	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3884	cd $tmp_data_catalog
	3885	all_files=`ls -1 ${frelout[$i]}/*`
	3886	cd - > /dev/null
	3887	(( inode = 0 ))
	3888	(( tp1 = tasks_per_node + 1 ))
	3889	while (( inode < nodes ))
	3890	do
	3891	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3892	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3893	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3894	(( inode = inode + 1 ))
	3895	done
	3896	fi
	3897	elif [[ $archive_system = none ]]
	3898	then
	3899	printf " +++ archiving on $localhost not available!\n"
	3900	fi
	3901
	3902	if [[ $archive_system != none ]]
	3903	then
[399]	3904	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
[1]	3905	then
[164]	3906	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[416]	3907	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
[1]	3908	elif [[ $localhost = nech ]]
	3909	then
[82]	3910	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3911	fi
	3912	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3913	fi
	3914	else
[399]	3915	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
[1]	3916	fi
	3917
	3918
	3919	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	3920	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3921	if [[ $files_for_pes = false ]]
	3922	then
	3923	cat /dev/null > ${pathout[$i]}
	3924	else
	3925	mkdir -p ${pathout[$i]}
	3926	fi
	3927
	3928	fi
	3929
	3930
	3931	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	3932	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	3933	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3934	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	3935	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	3936	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	3937	if [[ "${actionout[$i]}" = ar ]]
	3938	then
	3939	if [[ $files_for_pes = false ]]
	3940	then
	3941	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3942	printf "\n ${pathout[$i]}"
	3943	printf "\n File will be copied to archive-system ($archive_system) !\n"
	3944	else
	3945	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	3946	printf "\n ${pathout[$i]}"
	3947	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	3948	fi
	3949	mv ${localout[$i]} ${frelout[$i]}
	3950
	3951	file_saved=false
	3952
	3953	if [[ $archive_system = asterix ]]
	3954	then
	3955	do_stageout=true
	3956	(( stageout_anz = 0 ))
	3957	while [[ $do_stageout = true ]]
	3958	do
	3959	if [[ $files_for_pes = false ]]
	3960	then
	3961	stageout ${frelout[$i]} > STAGE_OUTPUT
	3962	else
	3963	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	3964	fi
	3965	cat STAGE_OUTPUT
	3966	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	3967	then
	3968	file_saved=true
	3969	do_stageout=false
	3970	else
	3971	if [[ $files_for_pes = false ]]
	3972	then
	3973	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	3974	else
	3975	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	3976	fi
	3977	(( stageout_anz = stageout_anz + 1 ))
	3978	if (( stageout_anz == 10 ))
	3979	then
	3980	printf "\n +++ stoped after 10 unsuccessful tries!"
	3981	archive_save=false
	3982	do_stageout=false
	3983	else
	3984	printf "\n *** new try to store on archive after 15 min:"
	3985	sleep 900
	3986	fi
	3987	fi
	3988	done
	3989	elif [[ $archive_system = DMF ]]
	3990	then
	3991	if [[ $files_for_pes = false ]]
	3992	then
	3993	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	3994	locat=DMF
	3995	exit
	3996	else
	3997	rm -rf $ARCHIVE/${frelout[$i]}
	3998	cp -r ${frelout[$i]} $ARCHIVE
	3999	fi
	4000	file_saved=true
	4001	elif [[ $archive_system = tivoli ]]
	4002	then
	4003	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4004	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4005	# GELEGT WERDEN
	4006	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4007	chmod g+rx $tmp_data_catalog
	4008	if [[ $files_for_pes = false ]]
	4009	then
	4010	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4011	else
	4012	mkdir $tmp_data_catalog/${frelout[$i]}
	4013	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4014	fi
	4015
	4016	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4017	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4018	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4019	if [[ $files_for_pes = false ]]
	4020	then
	4021	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4022	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4023	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4024	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4025	else
	4026	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4027	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4028	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4029	fi
	4030
[164]	4031	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	4032	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4033	file_saved=true
	4034
	4035	elif [[ $archive_system = ut ]]
	4036	then
	4037	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4038	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4039	# GELEGT WERDEN
	4040	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4041	chmod g+rx $tmp_data_catalog
	4042	if [[ $files_for_pes = false ]]
	4043	then
	4044	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4045	else
	4046	mkdir $tmp_data_catalog/${frelout[$i]}
	4047	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4048	fi
	4049
	4050	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4051	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4052	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4053	if [[ $files_for_pes = false ]]
	4054	then
	4055	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4056	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4057	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4058	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4059	else
	4060	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4061	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4062	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4063	fi
	4064
[82]	4065	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	4066	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4067	file_saved=true
	4068
	4069	else
	4070	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	4071	archive_save=false
	4072	fi
	4073	if [[ $file_saved = true ]]
	4074	then
	4075	if [[ $files_for_pes = false ]]
	4076	then
	4077	cat /dev/null > ${pathout[$i]}
	4078	else
	4079	mkdir -p ${pathout[$i]}
	4080	fi
	4081	fi
	4082	fi
	4083
	4084	# APPEND AUF LOKALER MASCHINE
	4085	if [[ "${actionout[$i]}" = "a" ]]
	4086	then
	4087	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	4088	cat ${localout[$i]} >> ${pathout[$i]}
	4089	fi
	4090
	4091	# KOPIEREN AUF LOKALER MASCHINE
	4092	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	4093	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	4094	then
	4095
	4096	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	4097	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	4098	then
	4099	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	4100	if [[ $link_local_output = true ]]
	4101	then
	4102	printf " using ln -f\n"
	4103	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4104	fi
	4105	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4106	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	4107	then
	4108	if [[ $link_local_output = true ]]
	4109	then
	4110	printf " ln failed, using cp...\n"
	4111	fi
	4112	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4113	fi
[1]	4114	else
	4115	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	4116	if [[ $link_local_output = true ]]
	4117	then
	4118	printf " using ln -f\n"
	4119	ln -f ${localout[$i]} ${pathout[$i]}
	4120	fi
	4121	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4122	if [[ ! -f "${pathout[$i]}" ]]
	4123	then
	4124	if [[ $link_local_output = true ]]
	4125	then
	4126	printf " ln failed, using cp...\n"
	4127	fi
	4128	cp ${localout[$i]} ${pathout[$i]}
	4129	fi
[1]	4130	fi
	4131
	4132	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	4133	then
	4134
	4135	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	4136	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	4137	# WIRD DANN KOPIERT
	4138	# PER MOVE UMBENANNT WERDEN
	4139	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	4140	if [[ $link_local_output = true ]]
	4141	then
	4142	printf " using ln -f\n"
	4143	mkdir ${pathout[$i]}
	4144	cd ${localout[$i]}
	4145	for file in $(ls *)
	4146	do
	4147	ln -f $file ${pathout[$i]}
	4148	done
	4149	cd $TEMPDIR
	4150	fi
	4151	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	4152	if [[ ! -f "${pathout[$i]}/_0000" ]]
	4153	then
	4154	if [[ $link_local_output = true ]]
	4155	then
	4156	printf " ln failed for .../_0000, using cp...\n"
	4157	fi
	4158	cp -r ${localout[$i]} ${pathout[$i]}
	4159	fi
[1]	4160
	4161	fi
	4162	fi
	4163	done
	4164	if (( i != 0 ))
	4165	then
	4166	if [[ $transfer_problems = true ]]
	4167	then
	4168	printf "\n$striche\n *** OUTPUT-files saved"
	4169	printf "\n +++ WARNING: some data transfers failed! \n"
	4170	else
	4171	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4172	fi
	4173	fi
	4174
	4175
	4176	# EVENTUELL FOLGEJOB STARTEN
	4177	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4178	if [[ -f CONTINUE_RUN ]]
	4179	then
	4180
	4181	if [[ $archive_save = true ]]
	4182	then
	4183
	4184	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4185	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4186	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4187	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4188	# HANDEN
	4189	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4190	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4191	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4192	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4193	then
	4194	mc=`echo $mc \| sed 's/#/f/g'`
	4195	fi
	4196
	4197
	4198	# JOB STARTEN
	4199	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4200	echo " $mc"
	4201	printf "\n$striche\n"
	4202	if [[ $localhost != $fromhost ]]
	4203	then
	4204
[635]	4205	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmku \|\| $localhost = ibms ]]
[1]	4206	then
	4207	echo "*** ssh will be used to initiate restart-runs!"
	4208	echo " return_addres=\"$return_addres\" "
	4209	echo " return_username=\"$return_username\" "
[635]	4210	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
[1]	4211	then
[374]	4212	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4213	else
[33]	4214	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4215	fi
	4216	else
	4217	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4218	locat=restart; exit
	4219	fi
	4220
	4221	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4222	# DER AKTUELLE JOB ENDET
[399]	4223	if [[ $queue = special1q ]]
	4224	then
	4225	sleep 120
	4226	else
	4227	sleep 30
	4228	fi
[1]	4229
	4230	else
	4231
	4232	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4233	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4234	cd $LOCAL_PWD
[108]	4235	if [[ $localhost = lcfimm ]]
	4236	then
	4237	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4238	else
	4239	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4240	fi
[1]	4241	cd - > /dev/null
	4242	fi
	4243	printf "\n$striche\n *** restart-run initiated \n"
	4244
	4245
	4246	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4247	# GEHOLT WORDEN SIND, LOESCHEN
	4248	(( i = 0 ))
	4249	while (( i < iin ))
	4250	do
	4251	(( i = i + 1 ))
	4252	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4253	then
	4254	rm -r $tmp_data_catalog/${frelin[$i]}
	4255	fi
	4256	done
	4257
	4258	else
	4259
	4260	printf "\n +++ no restart-run possible, since errors occured"
	4261	printf "\n during the archive process"
	4262	fi
	4263
	4264	fi
	4265
	4266
	4267
	4268	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4269	if [[ "$email_notification" != "none" ]]
[1]	4270	then
	4271
	4272	if [[ $localhost != $fromhost ]]
	4273	then
	4274	if [[ -f CONTINUE_RUN ]]
	4275	then
	4276	echo "PALM restart run necessary" > email_text
	4277	echo "description header of actual run:" >> email_text
	4278	cat CONTINUE_RUN >> email_text
	4279	echo "mrun-command to restart:" >> email_text
	4280	echo "$mc" >> email_text
	4281	else
	4282	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4283	fi
	4284	mail $email_notification < email_text
	4285	printf "\n *** email notification sent to \"$email_notification\" "
	4286	fi
	4287	fi
	4288
	4289
	4290
	4291	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4292	cd $HOME
	4293	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4294
	4295	else
	4296
	4297
	4298	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4299	# CHENDE AKTIONEN DURCHGEFUEHRT
	4300
	4301	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[82]	4302	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	4303	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4304	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4305	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4306	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4307	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4308	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4309	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4310	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4311	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4312	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4313	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4314	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4315	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4316	if [[ $use_openmp = true ]]
	4317	then
[622]	4318	mrun_com=${mrun_com}" -O $threads_per_task"
[1]	4319	fi
[622]	4320	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
[397]	4321	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
[1]	4322	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4323	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4324	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4325	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4326	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4327	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[1]	4328	if [[ $do_remote = true ]]
	4329	then
	4330	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4331	fi
	4332
	4333
	4334	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4335	jobfile=jobfile.$RANDOM
	4336
	4337
	4338	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4339	echo "mkdir $TEMPDIR" >> $jobfile
	4340	echo "cd $TEMPDIR" >> $jobfile
	4341
	4342
	4343	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4344	if [[ $do_trace = true ]]
	4345	then
	4346	echo "set -x" >> $jobfile
	4347	else
	4348	echo "set +vx" >> $jobfile
	4349	fi
	4350
	4351
[191]	4352	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4353	# DATEI FUER DEN JOB
	4354	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
[1]	4355	then
	4356
[191]	4357	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4358	# KOPIEREN
	4359	if [[ $restart_run != true ]]
	4360	then
	4361	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4362	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4363	fi
[1]	4364
[191]	4365	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[193]	4366	echo "set -x" >> $jobfile
	4367	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4368	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4369
[193]	4370	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4371	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4372	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4373	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4374	echo "execute_mrun=true" >> $jobfile
	4375	echo " " >> $jobfile
	4376
[191]	4377	else
	4378
	4379	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4380	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4381	if [[ $do_compile = true ]]
	4382	then
	4383
	4384	source_catalog=SOURCES_FOR_RUN_$fname
	4385
	4386	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4387	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4388	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4389	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4390	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4391	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4392
	4393	for filename in $source_list
	4394	do
	4395	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4396	echo "cat > $filename << \"%END%\"" >> $jobfile
	4397	cat $source_catalog/$filename >> $jobfile
	4398	echo " " >> $jobfile
	4399	echo "%END%" >> $jobfile
	4400	echo " " >> $jobfile
	4401	done
	4402
[1]	4403	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4404	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4405	cat $source_catalog/Makefile >> $jobfile
[1]	4406	echo " " >> $jobfile
	4407	echo "%END%" >> $jobfile
	4408	echo " " >> $jobfile
	4409
[191]	4410	echo "cd - > /dev/null" >> $jobfile
[1]	4411
[191]	4412	fi
[1]	4413
	4414
[191]	4415	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4416	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4417	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4418	cat $config_file >> $jobfile
	4419	echo "%END%" >> $jobfile
	4420	echo " " >> $jobfile
[1]	4421
	4422
[191]	4423	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4424	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4425	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4426	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4427	echo "%END%" >> $jobfile
	4428	echo "chmod u+x $mrun_script_name" >> $jobfile
	4429	echo "execute_mrun=true" >> $jobfile
	4430	echo " " >> $jobfile
[1]	4431
	4432	fi
	4433
[191]	4434
[1]	4435	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4436	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4437	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4438	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4439	if [[ $do_remote = true ]]
	4440	then
	4441	(( i = 0 ))
	4442	while (( i < iin ))
	4443	do
	4444	(( i = i + 1 ))
	4445	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4446	if [[ "${transin[$i]}" = job ]]
	4447	then
	4448	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4449	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4450	echo " " >> $jobfile
	4451	echo "%END%" >> $jobfile
	4452	else
[82]	4453	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4454	fi
	4455
	4456	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4457	echo "if [[ \$? = 1 ]]" >> $jobfile
	4458	echo "then" >> $jobfile
	4459	echo " echo \" \" " >> $jobfile
	4460	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4461	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4462	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4463	echo " execute_mrun=false" >> $jobfile
	4464	echo "fi" >> $jobfile
	4465	done
	4466	fi
	4467
	4468	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4469	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4470	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4471	echo "export LOCAL_PWD" >> $jobfile
	4472
	4473	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4474	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4475	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4476
[66]	4477	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4478	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4479	then
	4480	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4481	fi
[1]	4482
	4483	# MRUN AUF ZIELRECHNER AUFRUFEN
	4484	echo "set -x" >> $jobfile
	4485	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4486
	4487	echo 'ls -al; echo `pwd`' >> $jobfile
	4488	echo "cd \$HOME" >> $jobfile
	4489	echo "rm -rf $TEMPDIR" >> $jobfile
	4490
	4491
	4492
	4493
	4494	# JOB PER SUBJOB STARTEN
	4495	if [[ $silent = false ]]
	4496	then
	4497	printf "\n "
	4498	else
	4499	printf "\n\n"
	4500	fi
	4501
[352]	4502	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
[1]	4503	rm -rf $jobfile
	4504
	4505
	4506	fi # ENDE REMOTE-TEIL
	4507
	4508
	4509
	4510	# ENDE DER PROZEDUR

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