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mrun @ 678

Last change on this file since 678 was 678, checked in by raasch, 13 years ago

New:
---

further adjustments on Tsubame and concerning openMP usage
(mrun, mbuild, subjob)

Changed:

Errors:

Bugfix in calculation of divergence of vertical flux of resolved scale
energy, pressure fluctuations, and flux of pressure fluctuation itself
(flow statistics)

Bugfix: module pegrid was missing. (user_statistics)

Property svn:keywords set to Id Rev

File size: 171.8 KB

Line
1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 678 2011-02-02 14:31:56Z raasch $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and atmosphere
218	# is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221
222
223
224
225	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
226
227	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
228	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
229	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
230
231	AddFilenames=""
232	additional_conditions=""
233	add_source_path=""
234	afname=""
235	archive_save=true
236	archive_system=none
237	compiler_name=""
238	cond1=""
239	cond2=""
240	config_file=.mrun.config
241	coupled_dist=""
242	coupled_mode="mpi1"
243	cpp_opts=""
244	cpp_options=""
245	cpumax=0
246	cpurest=0
247	delete_temporary_catalog=true
248	do_batch=false
249	do_compile=true
250	do_remote=false
251	do_stagein=true
252	do_stageout=true
253	do_trace=false
254	email_notification="none"
255	exclude=""
256	executable=""
257	execution_error=false
258	fimm=false
259	fname=test
260	fromhost=""
261	global_revision=""
262	group_number=none
263	host=""
264	host_file=""
265	hp=""
266	ignore_archive_error=false
267	input_list=""
268	interpreted_config_file=""
269	job_catalog="~/job_queue"
270	job_on_file=""
271	keep_data_from_previous_run=false
272	link_local_input=false
273	link_local_output=false
274	localhost_realname=$(hostname)
275	local_compile=false
276	local_dvrserver_running=.FALSE.
277	locat=normal
278	mainprog=""
279	makefile=""
280	mc=$0
281	while [[ $(echo $mc \| grep -c "/") != 0 ]]
282	do
283	mc=`echo $mc \| cut -f2- -d"/"`
284	done
285	module_calls=""
286	mrun_script_name=$mc
287	netcdf_inc=""
288	netcdf_lib=""
289	netcdf_support=false
290	node_usage=default
291	numprocs=""
292	numprocs_atmos=0
293	numprocs_ocean=0
294	OOPT=""
295	openmp=false
296	output_list=""
297	package_list=""
298	punkte="..........................................................."
299	queue=none
300	read_from_config=""
301	restart_run=false
302	if [[ `hostname` = rte10 ]]
303	then
304	return_addres=133.5.185.60
305	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
306	else
307	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
308	fi
309	return_password=""
310	return_username=$LOGNAME
311	remotecall=false
312	remote_username=""
313	run_coupled_model=false
314	run_mode=""
315	scirocco=false
316	store_on_archive_system=false
317	striche=" ----------------------------------------------------------------------------"
318	silent=false
319	source_list=""
320	source_path=SOURCE
321	tasks_per_node=""
322	threads_per_task=1
323	tmpcreate=false
324	tmp_data_catalog=""
325	transfer_problems=false
326	usern=$LOGNAME
327	use_openmp=false
328	working_directory=`pwd`
329	TOPT=""
330	XOPT=""
331	zeit=$( date \| cut -c 12-19 )
332
333	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
334	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
335
336	typeset -R30 calltime
337	typeset -L20 spalte1
338	typeset -L40 spalte2
339	typeset -L60 spalte3
340	typeset -L35 string1=`date`
341	typeset -L12 string2=$usern
342	typeset -L12 string3=$localhost_realname
343	typeset -L12 string4
344	typeset -L12 string5
345	typeset -L30 version="MRUN 2.0 Rev$Rev: 678 $"
346
347
348
349	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
350	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
351
352	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
353	# EXPORTIERT WERDEN
354	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
355	export group_number input_list memory numprocs output_list queue run_mode
356
357
358
359	# FEHLERBEHANDLUNG
360	# BEI EXIT:
361	trap 'rm -rf $working_directory/tmp_mrun
362	if [[ $locat != localhost ]]
363	then
364	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
365	# then
366	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
367	#MRUN-calls on $localhost
368	#
369	#date and time user localhost remotehost termination mrun-command
370	#--------------------------------------------------------------------------------------------------------------------
371	#%STATEND%
372	# chmod 666 ${mrun_path}/statistik/mrun_statistik
373	# fi
374	#
375	# # EINTRAG IN DIE STATISTIK-DATEI
376	# string4=$host
377	# string5=$locat
378	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
379	# then
380	# if [[ $do_batch = true ]]
381	# then
382	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
383	# else
384	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
385	# fi
386	# fi
387	echo " " > /dev/null
388	fi
389
390	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
391	then
392
393	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
394	(( i = 0 ))
395	while (( i < iec ))
396	do
397	(( i = i + 1 ))
398	printf "\n *** Execution of ERROR-command:\n"
399	printf " >>> ${err_command[$i]}\n"
400	eval ${err_command[$i]}
401	done
402	if [[ -n $interpreted_config_file ]] then
403	rm -rf $interpreted_config_file
404	fi
405	if [[ -n .mrun_environment ]] then
406	rm -rf .mrun_environment
407	fi
408	if [[ $tmpcreate = true ]]
409	then
410	printf "\n *** Contents of \"$TEMPDIR\":\n"
411	ls -al; cd
412	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
413	fi
414	if [[ "$dvrserver_id" != "" ]]
415	then
416	echo "+++ killing dvrserver_id=$dvrserver_id"
417	kill $dvrserver_id
418	fi
419	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
420	then
421	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
422	fi
423	printf "\n\n+++ MRUN killed \n\n"
424	elif [[ $locat != control_c ]]
425	then
426	printf "\n\n --> all actions finished\n\n"
427	printf " Bye, bye $usern !!\n\n"
428	fi' exit
429
430
431	# BEI TERMINAL-BREAK:
432	trap 'rm -rf $working_directory/tmp_mrun
433	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
434	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
435	then
436	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
437	fi
438	if [[ "$dvrserver_id" != "" ]]
439	then
440	echo "+++ killing dvrserver_id=$dvrserver_id"
441	kill $dvrserver_id
442	fi
443	printf "\n+++ MRUN killed by \"^C\" \n\n"
444	locat=control_c
445	exit
446	' 2
447
448
449	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
450	# BEEN SET
451	if [[ "$PALM_BIN" = "" ]]
452	then
453	printf "\n +++ environment variable PALM_BIN has not been set"
454	printf "\n please set it to the directory where the PALM scripts are located"
455	locat=palm_bin; exit
456	fi
457	export PATH=$PALM_BIN:$PATH
458
459
460
461	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
462	# FUER FOLGEJOBS BENOETIGT WIRD
463	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vxX:yY: option
464	do
465	case $option in
466	(a) afname=$OPTARG;;
467	(A) store_on_archive_system=true; mc="$mc -A";;
468	(b) do_batch=true; mc="$mc -b";;
469	(B) delete_temporary_catalog=false; mc="$mc -B";;
470	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
471	(C) restart_run=true; mc="$mc -C";;
472	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
473	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
474	(F) job_on_file="-D"; mc="$mc -F";;
475	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
476	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
477	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
478	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
479	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
480	(I) ignore_archive_error=true; mc="$mc -I";;
481	(k) keep_data_from_previous_run=true; mc="$mc -k";;
482	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
483	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
484	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
485	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
486	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
487	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
488	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
489	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
490	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
491	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
492	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
493	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
494	(S) read_from_config=false; mc="$mc -S";;
495	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
496	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
497	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
498	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
499	(v) silent=true; mc="$mc -v";;
500	(x) do_trace=true;set -x; mc="$mc -x";;
501	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
502	(y) ocean_file_appendix=true; mc="$mc -y";;
503	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
504	(\?) printf "\n +++ unknown option $OPTARG \n"
505	printf "\n --> type \"$0 ?\" for available options \n"
506	locat=parameter;exit;;
507	esac
508	done
509
510
511	# EVTL. POSITIONSPARAMETER EINLESEN
512	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
513	shift OPTIND-1
514
515
516	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
517	if [[ "$1" = "?" ]]
518	then
519	(printf "\n *** mrun can be called as follows:\n"
520	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
521	printf "\n Description of available options:\n"
522	printf "\n Option Description Default-Value"
523	printf "\n -a base name of input files equiv. -d"
524	printf "\n -A archiving when using file-attribute fl"
525	printf "\n -b batch-job on local machine ---"
526	printf "\n -B do not delete temporary directory at end ---"
527	printf "\n -c configuration file .mrun.config"
528	printf "\n -d base name of files attached to program test"
529	printf "\n -D preprocessor(cpp)-directives \"\" "
530	printf "\n -F create remote job file only ---"
531	printf "\n -h execution host $localhost_realname"
532	printf "\n -i INPUT control list \"\" "
533	printf "\n -I archiving errors of previous batch-jobs"
534	printf "\n will be ignored"
535	printf "\n -k keep data from previous run"
536	printf "\n -K additional conditions for controling"
537	printf "\n usage of conditional code and"
538	printf "\n env-variables in configuration file \"\" "
539	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
540	printf "\n -M Makefile name Makefile"
541	printf "\n -n node usage (shared/not_shared) depending on -h"
542	printf "\n -o OUTPUT control list \"\" "
543	printf "\n -O use OpenMP ---"
544	printf "\n -p software package list \"\" "
545	printf "\n -q queue \"$queue\" "
546	printf "\n -r run control list (combines -i -o) \"\" "
547	printf "\n -s filenames of routines to be compiled \"\" "
548	printf "\n must end with .f, .f90, .F, or .c !"
549	printf "\n use \"..\" for more than one file and wildcards"
550	printf "\n -s TEST compiles all files with w-permit"
551	printf "\n -S config file interpreted by shellscript ---"
552	printf "\n -t allowed cpu-time in seconds (batch) 0"
553	printf "\n -T tasks per node depending on -h"
554	printf "\n -u username on remote machine \"\" "
555	printf "\n -v no prompt for confirmation ---"
556	printf "\n -x tracing of mrun for debug purposes ---"
557	printf "\n -X # of processors (on parallel machines) 1"
558	printf "\n -y add appendix \"_O\" to all local output"
559	printf "\n files (ocean precursor runs followed by"
560	printf "\n coupled atmosphere-ocean runs) ---"
561	printf "\n -Y run coupled model, \"#1 #2\" with"
562	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
563	printf "\n "
564	printf "\n Possible values of positional parameter <modus>:"
565	printf "\n \"?\" - this outline \n\n") \| more
566	exit
567	elif [[ "$1" != "" ]]
568	then
569	printf "\n +++ positional parameter $1 unknown \n"
570	locat=parameter; exit
571	fi
572
573
574
575	# KURZE STARTMELDUNG
576	printf "\n*** $version "
577	printf "\n will be executed. Please wait ..."
578
579
580
581	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
582	if [[ ! -f $config_file ]]
583	then
584	printf "\n\n +++ configuration file: "
585	printf "\n $config_file"
586	printf "\n does not exist"
587	locat=connect; exit
588	fi
589
590
591	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
592	line=""
593	grep "%host_identifier" $config_file > tmp_mrun
594	while read line
595	do
596	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
597	then
598	HOSTNAME=`echo $line \| cut -d" " -s -f2`
599	host_identifier=`echo $line \| cut -d" " -s -f3`
600	if [[ $localhost_realname = $HOSTNAME ]]
601	then
602	localhost=$host_identifier
603	break
604	fi
605	fi
606	done < tmp_mrun
607
608	if [[ "$localhost" = "" ]]
609	then
610	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
611	printf "\n for local host \"$localhost_realname\"."
612	printf "\n Please add line"
613	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
614	printf "\n to the configuration file."
615	locat=localhost; exit
616	fi
617
618
619	# HOSTSPEZIFISCHE VARIABLEN SETZEN
620	case $localhost_realname in
621	(r1\|r2\|h01\|b01) archive_system=tivoli;;
622	(cs*) archive_system=ut;;
623	(fimm.bccs.uib.no) fimm=true;;
624	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
625	(scirocco) scirocco=true;;
626	esac
627
628
629
630	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
631	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
632	[[ "$afname" = "" ]] && afname=$fname
633
634
635	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
636	if [[ "$run_mode" != "" ]]
637	then
638	input_list="$input_list $run_mode"
639	output_list="$output_list $run_mode"
640	fi
641
642
643	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
644	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
645	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
646	# STARTET)
647	if [[ "$fromhost" = "" ]]
648	then
649	fromhost=$localhost
650	fi
651
652
653	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
654	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
655	then
656	source_list=TEST
657	local_compile=true
658	host=$localhost
659	fi
660
661
662	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
663	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
664	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
665	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
666	if [[ -n $host && "$host" != $localhost ]]
667	then
668	do_batch=true
669	do_remote=true
670	case $host in
671	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck) true;;
672	(*) printf "\n"
673	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
674	printf "\n is not available"
675	locat=nqs; (( iec = 0 )); exit;;
676	esac
677	else
678	host=$localhost
679	fi
680
681
682	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
683	if [[ -n $additional_conditions ]]
684	then
685	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
686	cond1=`echo $additional_conditions \| cut -d" " -f1`
687	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
688	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
689	if [[ -n $dummy ]]
690	then
691	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
692	locat=options; exit
693	fi
694	block=_$cond1
695	[[ -n $cond2 ]] && block=${block}_$cond2
696	fi
697
698
699	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
700	if [[ $run_coupled_model = true ]]
701	then
702
703	if [[ -n $coupled_dist ]]
704	then
705
706	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
707	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
708
709	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
710	then
711
712	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
713	printf "\n PEs (total) : $numprocs"
714	printf "\n PEs (atmosphere): $numprocs_atmos"
715	printf "\n PEs (ocean) : $numprocs_ocean"
716	locat=coupling; exit
717
718	fi
719
720	else
721
722	(( numprocs_ocean = $numprocs / 2 ))
723	(( numprocs_atmos = $numprocs / 2 ))
724
725	fi
726	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
727
728	# GET coupled_mode FROM THE CONFIG FILE
729	line=""
730	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
731	while read line
732	do
733	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
734	then
735	coupled_mode="mpi2"
736	fi
737	done < tmp_mrun
738
739	fi
740
741
742	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
743	# ARCHIVIERUNG FEHLGESCHLAGEN IST
744	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
745	then
746	if [[ $ignore_archive_error = false ]]
747	then
748	printf "\n +++ data archiving of previous run failed"
749	printf "\n see directory \~/job_queue on remote machine"
750	locat=archive; exit
751	else
752	printf "\n +++ warning: data archiving in a previous run failed"
753	printf "\n MRUN continues, trying to get backup copy"
754	fi
755	fi
756
757
758
759	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
760	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
761	if [[ "$read_from_config" = false ]]
762	then
763
764	[[ $silent = false ]] && printf "\n Reading the configuration file... "
765	while read zeile
766	do
767	[[ $silent = false ]] && printf "."
768
769
770	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
771	# ERSETZEN
772	eval zeile=\"$zeile\"
773
774
775	# INTERPRETATION DER ZEILE
776	if [[ "$(echo $zeile)" = "" ]]
777	then
778	# LEERZEILE, KEINE AKTION
779	continue
780
781	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
782	then
783
784	# ZEILE IST KOMMENTARZEILE
785	true
786
787	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
788	then
789
790	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
791	zeile=$(echo $zeile \| cut -c2-)
792	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
793	var=`echo $zeile \| cut -d" " -f1`
794	value=`echo $zeile \| cut -d" " -s -f2`
795	for_host=`echo $zeile \| cut -d" " -s -f3`
796	for_cond1=`echo $zeile \| cut -d" " -s -f4`
797	for_cond2=`echo $zeile \| cut -d" " -s -f5`
798
799	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
800	then
801
802	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
803	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
804	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
805
806
807	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
808	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
809	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
810	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
811	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
812	# KONFIGURATIONSDATEI
813	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
814	then
815	eval $var=\$value
816
817	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
818	if [[ $do_trace = true ]]
819	then
820	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
821	fi
822	fi
823
824	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
825	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
826	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
827	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
828	if [[ $var = host ]]
829	then
830	if [[ -n $host && "$host" != $localhost ]]
831	then
832	do_batch=true
833	do_remote=true
834	case $host in
835	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
836	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
837	printf "\n is not available"
838	locat=nqs; exit;;
839	esac
840	else
841	host=$localhost
842	fi
843	fi
844
845	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
846	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
847	# DEN PROGRAMMEN BENOETIGT WERDEN
848	export $var
849	fi
850
851
852
853
854	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
855	then
856
857	# ZEILE DEFINIERT ERROR-KOMMANDO
858	(( iec = iec + 1 ))
859	zeile=$(echo $zeile \| cut -c4-)
860	err_command[$iec]="$zeile"
861
862	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
863	then
864
865	# ZEILE DEFINIERT INPUT-KOMMANDO
866	(( iic = iic + 1 ))
867	zeile=$(echo $zeile \| cut -c4-)
868	in_command[$iic]="$zeile"
869
870	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
871	then
872
873	# ZEILE DEFINIERT OUTPUT-KOMMANDO
874	(( ioc = ioc + 1 ))
875	zeile=$(echo $zeile \| cut -c4-)
876	out_command[$ioc]="$zeile"
877
878	else
879
880	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
881	# s2a: in/out - Feld
882	# s2b: loc - Feld (optional)
883	# s2c: tr/ar - Feld (optional)
884	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
885	s1=`echo $zeile \| cut -d" " -f1`
886	s2=`echo $zeile \| cut -d" " -s -f2`
887	s2a=$(echo $s2 \| cut -d":" -f1)
888	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
889	then
890	s2b=""
891	s2c=""
892	else
893	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
894	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
895	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
896	fi
897	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
898	s3=`echo $zeile \| cut -d" " -f3`
899	s4=`echo $zeile \| cut -d" " -s -f4`
900	s5=`echo $zeile \| cut -d" " -s -f5`
901	s6=`echo $zeile \| cut -d" " -s -f6`
902
903
904	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
905	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
906	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
907	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
908	# HANDEN SEIN MUSS (D.H. s2b = loc)
909	IFSALT="$IFS"; IFS="$IFS:"
910	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
911	then
912	found=false
913	for actual in $input_list
914	do
915	for formal in $s3
916	do
917	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
918	done
919	done
920	if [[ $found = true ]]
921	then
922	(( iin = iin + 1 ))
923	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
924	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
925	extin[$iin]=$s6
926	fi
927	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
928	then
929	found=false
930	for actual in $output_list
931	do
932	for formal in $s3
933	do
934	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
935	done
936	done
937	if [[ $found = true ]]
938	then
939	(( iout = iout + 1 ))
940	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
941	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
942	fi
943	elif [[ "$s2a" != in && "$s2a" != out ]]
944	then
945	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
946	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
947	locat=connect; exit
948	fi
949	IFS="$IFSALT"
950	fi
951	done < $config_file
952
953	else
954
955
956	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
957	[[ $silent = false ]] && printf "..."
958	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
959	export interpreted_config_file=.icf.$RANDOM
960
961
962
963	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
964	# VERFUEGUNG STELLEN
965	cat > .mrun_environment << %%END%%
966	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
967	config_file = '$config_file', do_remote = '$do_remote',
968	do_trace = '$do_trace', host = '$host',
969	input_list = '$input_list', icf = '$interpreted_config_file',
970	localhost = '$localhost', output_list = '$output_list' /
971
972	%%END%%
973
974	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
975	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
976	mrun_memory=$memory
977	mrun_group_number=$group_number
978	mrun_cpumax=$cpumax
979	mrun_numprocs=$numprocs
980
981	if [[ $localhost_realname = "sx-fep" ]]
982	then
983	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
984	else
985
986	if [[ "$host" != $localhost ]]
987	then
988
989	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
990	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
991	if [[ $? != 0 ]]
992	then
993	printf "\n\n +++ no interpret_config found"
994	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
995	locat=interpret_config; exit
996	fi
997	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
998	$interpret_config_executable
999
1000	else
1001
1002	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1003	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1004	then
1005	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1006	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1007	locat=interpret_config; exit
1008	else
1009	interpret_config${block}.x
1010	fi
1011
1012	fi
1013	fi
1014	rm .mrun_environment
1015
1016
1017	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1018	chmod u+x $interpreted_config_file
1019	export PATH=$PATH:.
1020	. $interpreted_config_file
1021	rm $interpreted_config_file
1022
1023
1024	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1025	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1026	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1027	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1028	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1029
1030	fi
1031
1032
1033	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1034	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1035	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1036	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1037	if [[ "$SOURCES_COMPLETE" = "" ]]
1038	then
1039
1040	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1041	# VEREINBART WURDE
1042	source_path=""
1043	line=""
1044	grep "%source_path" $config_file > tmp_mrun
1045	while read line
1046	do
1047	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1048	then
1049	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1050	then
1051	global_source_path=`echo $line \| cut -d" " -f2`
1052	fi
1053	fi
1054	done < tmp_mrun
1055
1056	line=""
1057	found=false
1058	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1059	while read line
1060	do
1061	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1062	then
1063	if [[ $found = true ]]
1064	then
1065	printf "\n\n +++ more than one source path found in configuration file"
1066	printf "\n for local host \"$localhost\" "
1067	locat=source_path; exit
1068	fi
1069	source_path=`echo $line \| cut -d" " -f2`
1070	found=true
1071	fi
1072	done < tmp_mrun
1073	rm tmp_mrun
1074
1075	if [[ "$source_path" = "" ]]
1076	then
1077	if [[ "$global_source_path" != "" ]]
1078	then
1079	source_path=$global_source_path
1080	else
1081	printf "\n\n +++ no source path found in configuration file"
1082	printf "\n for local host \"$localhost\" "
1083	locat=source_path; exit
1084	fi
1085	fi
1086	eval source_path=$source_path
1087
1088	if [[ ! -d $source_path ]]
1089	then
1090	printf "\n\n +++ source path \"$source_path\" on local host"
1091	printf "\n \"$localhost\" does not exist"
1092	locat=source_path; exit
1093	fi
1094
1095	fi
1096
1097
1098	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1099	# DURCH OPTION -G MITGETEILT)
1100	if [[ "$global_revision" = "" ]]
1101	then
1102	global_revision=`svnversion $source_path 2>/dev/null`
1103	global_revision="Rev: $global_revision"
1104	fi
1105
1106
1107	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1108	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1109	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1110	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1111	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1112	if [[ -n $host && "$host" != $localhost ]]
1113	then
1114	do_batch=true
1115	do_remote=true
1116	case $host in
1117	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
1118	(*) printf "\n"
1119	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1120	printf "\n is not available"
1121	locat=nqs; (( iec = 0 )); exit;;
1122	esac
1123	else
1124	host=$localhost
1125	fi
1126
1127
1128	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1129	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1130	then
1131
1132	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1133	if [[ ! -n $numprocs ]]
1134	then
1135	printf "\n"
1136	printf "\n +++ option \"-K parallel\" requires additional specification"
1137	printf "\n of the number of processors to be used by"
1138	printf "\n mrun-option \"-X\" or by environment-variable"
1139	printf "\n \"numprocs\" in the configuration file"
1140	locat=numprocs; (( iec = 0 )); exit
1141	fi
1142
1143	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1144	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1145	# GESAMTPROZESSORANZAHL IST
1146	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibms ]]
1147	then
1148	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1149	(( ival = $tasks_per_node ))
1150	(( pes = numprocs ))
1151	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1152	# then
1153	# (( pes = pes - 1 ))
1154	# fi
1155	(( ii = pes / ival ))
1156	if (( pes - ii * ival > 0 ))
1157	then
1158	printf "\n"
1159	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1160	printf "\n divisor of the total number of processors (option \"-X\")"
1161	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1162	locat=tasks_per_node; (( iec = 0 )); exit
1163	fi
1164	fi
1165
1166	# IBMY HAT NUR EINEN KNOTEN
1167	if [[ $host = ibmy ]]
1168	then
1169	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1170	then
1171	printf "\n"
1172	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1173	printf "\n total number of processors (option \"-X\")"
1174	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1175	locat=tasks_per_node; (( iec = 0 )); exit
1176	fi
1177	fi
1178
1179	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1180	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1181	# if [[ $use_openmp = true ]]
1182	# then
1183	# threads_per_task=$tasks_per_node
1184	# tasks_per_node=1
1185	# fi
1186
1187	# SETTINGS FOR SUBJOB-COMMAND
1188	TOPT="-T $tasks_per_node"
1189	OOPT="-O $threads_per_task"
1190
1191	# GESAMTZAHL DER KNOTEN BESTIMMEN
1192	if [[ "$tasks_per_node" != "" ]]
1193	then
1194	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1195	fi
1196
1197	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1198	# SETZEN
1199	if [[ $node_usage = default ]]
1200	then
1201	if [[ $host = ibms ]]
1202	then
1203	node_usage=shared
1204	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1205	then
1206	node_usage=singlejob
1207	else
1208	node_usage=not_shared
1209	fi
1210	fi
1211
1212	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1213	then
1214	printf "\n"
1215	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1216	printf "\n \"shared\" or \"not_shared\""
1217	locat=tasks_per_node; (( iec = 0 )); exit
1218	fi
1219
1220	fi
1221
1222	# PRUEFEN, OB HOSTFILE EXISTIERT
1223	if [[ -n $hostfile ]]
1224	then
1225	if [[ ! -f $hostfile ]]
1226	then
1227	printf "\n"
1228	printf "\n +++ hostfile \"$hostfile\" does not exist"
1229	locat=hostfile; exit
1230	fi
1231	fi
1232
1233	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1234	if [[ $host = ibmy && $do_remote = false ]]
1235	then
1236	if [[ ! -f $HOME/.rhosts ]]
1237	then
1238	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1239	printf "\n\n *** file:"
1240	printf "\n $HOME/.rhosts"
1241	printf "\n was created\n"
1242	fi
1243	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1244	then
1245	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1246	printf "\n\n *** file:"
1247	printf "\n $HOME/.rhosts"
1248	printf "\n was extended by the name of the current host\n"
1249	fi
1250	fi
1251
1252
1253
1254	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1255	if [[ $queue = none ]]
1256	then
1257	case $host in
1258	(ibmh) queue=no_class;;
1259	(ibmy) queue=parallel;;
1260	(lckyoto) queue=ph;;
1261	(lcsgib) queue=bigq;;
1262	(lcsgih) queue=bigq;;
1263	(lctit) queue=S;;
1264	(nech) queue=none;;
1265	(necriam) queue=SP;;
1266	(unics) queue=unics;;
1267	esac
1268	fi
1269
1270
1271	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1272	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1273	# ERMITTELN
1274	(( i = 0 ))
1275	while (( i < iin ))
1276	do
1277	(( i = i + 1 ))
1278	(( maxcycle = 0 ))
1279
1280	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1281	if [[ "${actionin[$i]}" = di ]]
1282	then
1283	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1284	# REM-MASCHINE AUSWERTEN
1285	eval filename=${pathin[$i]}/${endin[$i]}
1286	else
1287	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1288	# REM-MASCHINE AUSWERTEN
1289	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1290	fi
1291
1292	# PRUEFEN AUF VORHANDENSEIN
1293	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1294	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1295	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1296	then
1297	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1298	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1299	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1300	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1301	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1302	if [[ "${transin[$i]}" != "locopt" ]]
1303	then
1304	printf "\n\n +++ INPUT-file: "
1305	if [[ "${extin[$i]}" = "" ]]
1306	then
1307	printf "\n $filename"
1308	else
1309	printf "\n $filename.${extin[$i]}"
1310	fi
1311	printf "\n does not exist\n"
1312	locat=input; exit
1313	else
1314	transin[$i]="unavailable"
1315	fi
1316	else
1317
1318	# ZYKLUSNUMMER FESTSTELLEN
1319	ls -1 -d $filename > filelist 2>/dev/null
1320	ls -1 -d $filename.* >> filelist 2>/dev/null
1321	while read zeile
1322	do
1323	cycle=$(print $zeile \| cut -f2 -d".")
1324	if [[ "$cycle" = "$zeile" ]]
1325	then
1326	(( icycle = 0 ))
1327	elif [[ "$cycle" = "${extin[$i]}" ]]
1328	then
1329	(( icycle = 0 ))
1330	else
1331	(( icycle = $cycle ))
1332	fi
1333	if (( icycle > maxcycle ))
1334	then
1335	(( maxcycle = icycle ))
1336	file_to_be_used=$zeile
1337	fi
1338	done <filelist
1339	rm filelist
1340
1341	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1342	if (( maxcycle > 0 ))
1343	then
1344	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1345	then
1346	filename=${filename}.$maxcycle.${extin[$i]}
1347	else
1348	filename=${filename}.$maxcycle
1349	fi
1350	else
1351	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1352	then
1353	filename=${filename}.${extin[$i]}
1354	fi
1355	fi
1356
1357	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1358	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1359	absnamein[$i]=$filename
1360	if (( maxcycle > 0 ))
1361	then
1362	if [[ "${actionin[$i]}" = di ]]
1363	then
1364	frelin[$i]=${endin[$i]}.$maxcycle
1365	else
1366	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1367	fi
1368	else
1369	if [[ "${actionin[$i]}" = di ]]
1370	then
1371	frelin[$i]=${endin[$i]}
1372	else
1373	frelin[$i]=${afname}${endin[$i]}
1374	fi
1375	fi
1376
1377	fi
1378	done
1379
1380
1381	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1382	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1383	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1384	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1385	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1386	(( i = 0 ))
1387	while (( i < iout ))
1388	do
1389	(( i = i + 1 ))
1390	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1391	then
1392	if [[ "${actionout[$i]}" = tr ]]
1393	then
1394	actionout[$i]=""
1395	elif [[ "${actionout[$i]}" = trpe ]]
1396	then
1397	actionout[$i]=pe
1398	elif [[ "${actionout[$i]}" = tra ]]
1399	then
1400	actionout[$i]=a
1401	fi
1402	(( maxcycle = 0 ))
1403	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1404	eval catalogname=${pathout[$i]}
1405	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1406	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1407	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1408	then
1409
1410	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1411	if cat /dev/null > $filename
1412	then
1413	rm $filename
1414	else
1415
1416	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1417	if [[ ! -d $catalogname ]]
1418	then
1419	if mkdir -p $catalogname
1420	then
1421	printf "\n\n *** directory:"
1422	printf "\n $catalogname"
1423	printf "\n was created\n"
1424	else
1425	printf "\n\n +++ OUTPUT-file:"
1426	printf "\n $filename"
1427	printf "\n cannot be created, because directory does not exist"
1428	printf "\n and cannot be created either"
1429	printf "\n"
1430	locat=output ; exit
1431	fi 2>/dev/null
1432	else
1433	printf "\n\n +++ OUTPUT-file:"
1434	printf "\n $filename"
1435	printf "\n cannot be created, although directory exists"
1436	printf "\n"
1437	locat=output ; exit
1438	fi
1439	fi 2>/dev/null
1440	else
1441
1442	# ZYKLUSNUMMER FESTSTELLEN
1443	ls -1 -d $filename > filelist 2>/dev/null
1444	ls -1 -d $filename.* >> filelist 2>/dev/null
1445	while read zeile
1446	do
1447	cycle=$(print $zeile \| cut -f2 -d".")
1448	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1449	then
1450	(( icycle = 1 ))
1451	else
1452	(( icycle = $cycle + 1 ))
1453	fi
1454	if (( icycle > maxcycle ))
1455	then
1456	(( maxcycle = icycle ))
1457	fi
1458	done <filelist
1459	rm filelist
1460	fi
1461
1462	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1463	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1464	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1465	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1466	if [[ "${actionout[$i]}" != a ]]
1467	then
1468	if (( maxcycle > 0 ))
1469	then
1470	filename=${filename}.$maxcycle
1471	if cat /dev/null > $filename
1472	then
1473	rm $filename
1474	else
1475	printf "\n +++ OUTPUT-file:"
1476	printf "\n $filename"
1477	printf "\n cannot be created"
1478	locat=output ; exit
1479	fi
1480	fi
1481	else
1482	(( maxcycle = maxcycle - 1 ))
1483	if (( maxcycle > 0 ))
1484	then
1485	filename=${filename}.$maxcycle
1486	fi
1487	fi
1488
1489	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1490	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1491	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1492	pathout[$i]=$filename
1493	if (( maxcycle > 0 ))
1494	then
1495	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1496	else
1497	frelout[$i]=${fname}${endout[$i]}
1498	fi
1499
1500	fi
1501	done
1502
1503
1504	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1505	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1506	then
1507	if [[ "$dvr_inc" = "" ]]
1508	then
1509	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1510	printf "\n This is required for the dvrp_graphics package.\n"
1511	locat=dvr; exit
1512	fi
1513	if [[ "$dvr_lib" = "" ]]
1514	then
1515	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1516	printf "\n This is required for the dvrp_graphics package.\n"
1517	locat=dvr; exit
1518	fi
1519	fi
1520
1521
1522	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1523	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1524	# UEBERSETZT ZU WERDEN)
1525	if [[ "$mainprog" = "" && "$executable" = "" ]]
1526	then
1527	printf "\n +++ neither main program nor executable defined"
1528	locat=source; exit
1529	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1530	then
1531	printf "\n +++ main program as well as executable defined"
1532	locat=source; exit
1533	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1534	then
1535	do_compile=false
1536	fi
1537
1538
1539	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1540	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1541	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1542	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1543	then
1544	rm -rf SOURCES_FOR_RUN_$fname
1545	mkdir SOURCES_FOR_RUN_$fname
1546	fi
1547
1548
1549	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1550	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1551	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1552	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1553	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1554	then
1555
1556	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1557	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1558
1559
1560	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1561	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1562	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1563	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1564	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1565	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1566	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1567	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1568	# GESAMMELT
1569	if [[ "$source_list" = WRITE_PERMIT ]]
1570	then
1571
1572	source_list=""
1573	cd $source_path
1574
1575
1576	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1577	Names=$(ls -1 *.f90 2>&1)
1578	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1579	Names=$(ls -1 *.F90 2>&1)
1580	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1581	Names=$(ls -1 *.F 2>&1)
1582	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1583	Names=$(ls -1 *.f 2>&1)
1584	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1585	Names=$(ls -1 *.c 2>&1)
1586	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1587
1588
1589	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1590	for dateiname in $Filenames
1591	do
1592	if [[ -w $dateiname ]]
1593	then
1594	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1595	then
1596	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1597	source_list=$source_list"$dateiname "
1598	fi
1599	fi
1600	done
1601
1602	cd - > /dev/null
1603
1604
1605	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1606	then
1607
1608	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1609	source_list=""
1610	cd $source_path
1611
1612
1613	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1614	if [[ ! -d .svn ]]
1615	then
1616	printf "\n\n +++ source directory"
1617	printf "\n \"$source_path\" "
1618	printf "\n is not under control of \"subversion\"."
1619	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1620	fi
1621
1622
1623	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1624	Filenames=""
1625	svn status > tmp_mrun
1626	while read line
1627	do
1628	firstc=`echo $line \| cut -c1`
1629	if [[ $firstc = M \|\| $firstc = "?" ]]
1630	then
1631	Name=`echo "$line" \| cut -c8-`
1632	extension=`echo $Name \| cut -d. -f2`
1633	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1634	then
1635	Filenames="$Filenames "$Name
1636	fi
1637	fi
1638	done < tmp_mrun
1639
1640
1641	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1642	for dateiname in $Filenames
1643	do
1644	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1645	source_list=$source_list"$dateiname "
1646	done
1647
1648	cd - > /dev/null
1649
1650
1651	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1652	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1653	# VORHANDEN
1654	elif [[ "$source_list" != "" && $restart_run != true ]]
1655	then
1656
1657	cd $source_path
1658
1659	for filename in $source_list
1660	do
1661
1662	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1663	if [[ $(print $filename \| grep -c "/") != 0 ]]
1664	then
1665	printf "\n +++ source code file: $filename"
1666	printf "\n must not contain (\"/\") "
1667	locat=source; exit
1668	fi
1669
1670	if [[ ! -f $filename ]]
1671	then
1672	printf "\n +++ source code file: $filename"
1673	printf "\n does not exist"
1674	locat=source; exit
1675	else
1676	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1677	fi
1678
1679	done
1680
1681	cd - > /dev/null
1682
1683	fi
1684
1685
1686	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1687	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1688	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1689	if [[ $restart_run != true ]]
1690	then
1691
1692	if [[ ! -f "$source_path/$mainprog" ]]
1693	then
1694	printf "\n\n +++ main program: $mainprog"
1695	printf "\n does not exist in source directory"
1696	printf "\n \"$source_path\"\n"
1697	locat=source; exit
1698	else
1699	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1700	then
1701	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1702	source_list=${mainprog}" $source_list"
1703	fi
1704	fi
1705	fi
1706
1707
1708	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1709	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1710	if [[ "$restart_run" != true ]]
1711	then
1712	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1713	if [[ ! -f $makefile ]]
1714	then
1715	printf "\n +++ file \"$makefile\" does not exist"
1716	locat=make; exit
1717	else
1718	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1719	fi
1720	fi
1721
1722
1723	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1724	if [[ $restart_run != true && "$add_source_path" != "" ]]
1725	then
1726
1727	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1728	if [[ ! -d $add_source_path ]]
1729	then
1730	printf "\n\n +++ WARNING: additional source code directory"
1731	printf "\n \"$add_source_path\" "
1732	printf "\n does not exist or is not a directory."
1733	printf "\n No source code will be used from this directory!\n"
1734	add_source_path=""
1735	sleep 3
1736	else
1737
1738	cd $add_source_path
1739	found=false
1740
1741	Names=$(ls -1 *.f90 2>&1)
1742	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1743	Names=$(ls -1 *.F90 2>&1)
1744	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1745	Names=$(ls -1 *.F 2>&1)
1746	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1747	Names=$(ls -1 *.f 2>&1)
1748	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1749	Names=$(ls -1 *.c 2>&1)
1750	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1751
1752	cd - > /dev/null
1753	cd SOURCES_FOR_RUN_$fname
1754
1755	# COPY MAKEFILE IF EXISTING
1756	if [[ -f $add_source_path/Makefile ]]
1757	then
1758	printf "\n\n *** user Makefile from directory"
1759	printf "\n \"$add_source_path\" is used \n"
1760	sleep 1
1761	cp $add_source_path/Makefile .
1762	fi
1763
1764	for dateiname in $AddFilenames
1765	do
1766	if [[ -f $dateiname ]]
1767	then
1768	printf "\n +++ source code file \"$dateiname\" found in additional"
1769	printf "\n source code directory \"$add_source_path\" "
1770	printf "\n but was also given with option \"-s\" which means that it should be taken"
1771	printf "\n from directory \"$source_path\"."
1772	locat=source; exit
1773	fi
1774
1775	cp $add_source_path/$dateiname .
1776	source_list="$source_list $dateiname"
1777
1778	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1779	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1780	then
1781	printf "\n\n +++ user file \"$dateiname\" "
1782	printf "\n is not listed in Makefile \n"
1783	locat=source; exit
1784	else
1785
1786	# Default User-Interface von der Liste entfernen, falls Datei
1787	# ein User-Interface enthaelt
1788	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1789	# then
1790	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1791	# then
1792	# rm -rf user_interface.f90
1793	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1794	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1795	# printf "\n since a user-interface is found in file"
1796	# printf "\n \"$add_source_path/$dateiname\" \n"
1797	# sleep 3
1798	# else
1799	if [[ $found = false ]]
1800	then
1801	found=true
1802	printf "\n\n *** following user file(s) added to the"
1803	printf " files to be translated:\n "
1804	fi
1805	printf "$dateiname "
1806	sleep 0.5
1807	fi
1808	done
1809	[[ $found = true ]] && printf "\n"
1810	cd - > /dev/null
1811	fi
1812	fi
1813
1814
1815	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1816	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1817	if [[ $restart_run != true && -n $package_list ]]
1818	then
1819
1820	cd $source_path
1821
1822	for package in $package_list
1823	do
1824
1825	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1826
1827	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1828	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1829	# LIEFERT
1830	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1831
1832
1833	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1834	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1835	for source_list_name in $package_source_list
1836	do
1837	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1838	then
1839
1840	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1841	ending=`echo $source_list_name \| cut -f2 -d.`
1842	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1843	then
1844	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1845	source_list="$source_list $source_list_name"
1846	fi
1847	fi
1848	done
1849	done
1850
1851	cd - > /dev/null
1852	fi
1853
1854
1855	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1856	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1857	# if [[ "$restart_run" != true ]]
1858	# then
1859	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1860	# if [[ ! -f $makefile ]]
1861	# then
1862	# printf "\n +++ file \"$makefile\" does not exist"
1863	# locat=make; exit
1864	# else
1865	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1866	# fi
1867	# fi
1868
1869	fi # do_compile=true
1870
1871
1872	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1873	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1874	if [[ $do_compile = true ]]
1875	then
1876
1877	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1878	# ZUSAMMENSETZEN
1879	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1880	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1881	then
1882	cpp_options="${cpp_options},-D__ibm=__ibm"
1883	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1884	then
1885	cpp_options="$cpp_options -D__nec"
1886	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1887	then
1888	cpp_options="$cpp_options -D__lc"
1889	else
1890	cpp_options="$cpp_options -D__$localhost"
1891	fi
1892
1893	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1894	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1895	then
1896	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1897	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1898	else
1899	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1900	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1901	fi
1902
1903	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1904	if [[ -n $package_list ]]
1905	then
1906	for package in $package_list
1907	do
1908	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1909	then
1910	if [[ $package != "dvrp_graphics+1PE" ]]
1911	then
1912	cpp_options="${cpp_options},-D__$package=__$package"
1913	else
1914	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1915	export use_seperate_pe_for_dvrp_output=true
1916	fi
1917	else
1918	if [[ $package != "dvrp_graphics+1PE" ]]
1919	then
1920	cpp_options="$cpp_options -D__$package"
1921	else
1922	cpp_options="$cpp_options -D__dvrp_graphics"
1923	export use_seperate_pe_for_dvrp_output=true
1924	fi
1925	fi
1926	done
1927	fi
1928
1929	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1930	if [[ -n $cpp_opts ]]
1931	then
1932	for popts in $cpp_opts
1933	do
1934	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1935	then
1936	cpp_options="${cpp_options},-D__$popts=__$popts"
1937	else
1938	cpp_options="$cpp_options -D__$popts"
1939	fi
1940	done
1941	fi
1942
1943	else
1944
1945
1946	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1947	if [[ $do_remote = false ]]
1948	then
1949	if [[ ! -f $executable ]]
1950	then
1951	printf "\n +++ executable file: $executable"
1952	printf "\n does not exist"
1953	locat=executable; exit
1954	fi
1955	fi
1956	fi
1957
1958
1959	# JOBMODUS FESTSTELLEN
1960	if [[ "$ENVIRONMENT" = BATCH ]]
1961	then
1962	jobmo=BATCH
1963	else
1964	jobmo=INTERACTIVE
1965	fi
1966
1967
1968	# no interactive runs on lctit
1969	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1970	then
1971	printf "\n +++ no interactive runs allowed on host \"$host\" "
1972	printf "\n please submit batch job using mrun option \"-b\" \n"
1973	locat=normal; exit
1974	fi
1975
1976
1977	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1978	# DURCH BENUTZER ANDERWEITIG VEREINBART
1979	if [[ "$compiler_name" = "" ]]
1980	then
1981
1982	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1983	locat=compiler_name; exit
1984
1985	fi
1986
1987
1988	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1989	[[ $localhost = necriam ]] && compiler_name=mpif90
1990
1991
1992
1993	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1994	kennung=$RANDOM
1995	if [[ "$tmp_user_catalog" = "" ]]
1996	then
1997	if [[ $localhost = ibmh ]]
1998	then
1999	tmp_user_catalog=$SCRATCH
2000	elif [[ $localhost = nech ]]
2001	then
2002	tmp_user_catalog=$WRKSHR
2003	else
2004	tmp_user_catalog=/tmp
2005	fi
2006	fi
2007	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2008
2009
2010	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2011	# BESTIMMEN
2012	if [[ "$tmp_data_catalog" = "" ]]
2013	then
2014	if [[ $localhost = nech ]]
2015	then
2016	tmp_data_catalog=$WRKSHR/mrun_restart_data
2017	else
2018	tmp_data_catalog=/tmp/mrun_restart_data
2019	fi
2020	fi
2021
2022
2023	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2024	# ERSETZEN
2025	if [[ $do_remote = false && $do_compile = true ]]
2026	then
2027	eval fopts=\"$fopts\"
2028	eval lopts=\"$lopts\"
2029	fi
2030
2031
2032
2033	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2034	fopts="$fopts $netcdf_inc $dvr_inc"
2035	lopts="$lopts $netcdf_lib $dvr_lib"
2036	ROPTS="$ropts"
2037	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck ) && -n $numprocs ]]
2038	then
2039	XOPT="-X $numprocs"
2040	fi
2041
2042
2043
2044	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2045	# GRAMM BENOETIGT
2046	done=false
2047	while [[ $done = false ]]
2048	do
2049	cputime=$cpumax
2050	if (( $cputime == 0 ))
2051	then
2052	if [[ $do_batch = true ]]
2053	then
2054	printf "\n +++ cpu-time is undefined"
2055	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2056	printf "\n >>> "
2057	read cputime 1>/dev/null 2>&1
2058	else
2059	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2060	fi
2061	else
2062	done=true
2063	fi
2064	cpumax=$cputime
2065	done
2066
2067	(( minuten = cputime / 60 ))
2068	(( sekunden = cputime - minuten * 60 ))
2069
2070
2071	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2072	if [[ $do_batch = true ]]
2073	then
2074	done=false
2075	while [[ $done = false ]]
2076	do
2077	if (( memory == 0 ))
2078	then
2079	printf "\n +++ memory demand is undefined"
2080	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2081	printf "\n >>> "
2082	read memory 1>/dev/null 2>&1
2083	else
2084	done=true
2085	fi
2086	done
2087	fi
2088
2089
2090	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2091	if [[ $do_remote = true && -z $remote_username ]]
2092	then
2093	while [[ -z $remote_username ]]
2094	do
2095	printf "\n +++ username on remote host \"$host\" is undefined"
2096	printf "\n >>> Please type username:"
2097	printf "\n >>> "
2098	read remote_username
2099	done
2100	mc="$mc -u$remote_username"
2101	fi
2102
2103
2104	# set module load command and export for subjob
2105	if [[ "$modules" != "" ]]
2106	then
2107	if [[ $host = lctit ]]
2108	then
2109	export module_calls=". $modules"
2110	else
2111	export module_calls="module load ${modules};"
2112	fi
2113	fi
2114
2115	# bugfix for wrong netcdf module
2116	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2117	then
2118	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2119	then
2120	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2121	fi
2122	fi
2123
2124
2125	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2126	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2127	then
2128	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2129	then
2130	mpilib=mpt
2131	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2132	then
2133	mpilib=mvapich
2134	fi
2135	fi
2136
2137
2138
2139	###########################################################################
2140	# HEADER-AUSGABE
2141	###########################################################################
2142
2143
2144	calltime=$(date)
2145	printf "\n"
2146	# [[ $silent = false ]] && clear
2147	printf "#--------------------------------------------------------------# \n"
2148	printf "\| $version$calltime \| \n"
2149	printf "\| \| \n"
2150	spalte1="called on:"; spalte2=$localhost_realname
2151	printf "\| $spalte1$spalte2 \| \n"
2152	if [[ $local_compile = false ]]
2153	then
2154	if [[ $do_remote = true ]]
2155	then
2156	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2157	else
2158	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2159	fi
2160	else
2161	spalte1="compiling test only!"; spalte2=""
2162	fi
2163	printf "\| $spalte1$spalte2 \| \n"
2164	if [[ -n $numprocs ]]
2165	then
2166	spalte1="number of PEs:"; spalte2=$numprocs
2167	printf "\| $spalte1$spalte2 \| \n"
2168	fi
2169	if [[ -n $tasks_per_node ]]
2170	then
2171	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2172	printf "\| $spalte1$spalte2 \| \n"
2173	fi
2174	if [[ $use_openmp = true ]]
2175	then
2176	spalte1="threads per task:"; spalte2="$threads_per_task"
2177	printf "\| $spalte1$spalte2 \| \n"
2178	fi
2179	printf "\| \| \n"
2180	if [[ $do_compile = true ]]
2181	then
2182	if [[ "$mopts" != "" ]]
2183	then
2184	spalte1="make options:"; spalte2=$mopts
2185	printf "\| $spalte1$spalte2 \| \n"
2186	zeile=$(echo "$mopts" \| cut -c41-)
2187	while [[ "$zeile" != "" ]]
2188	do
2189	spalte1=""
2190	spalte2=$zeile
2191	printf "\| $spalte1$spalte2 \| \n"
2192	zeile=$(echo "$zeile" \| cut -c41-)
2193	done
2194	fi
2195
2196	spalte1="cpp directives:"; spalte2=$cpp_options
2197	printf "\| $spalte1$spalte2 \| \n"
2198	zeile=$(echo "$cpp_options" \| cut -c41-)
2199	while [[ "$zeile" != "" ]]
2200	do
2201	spalte1=""
2202	spalte2=$zeile
2203	printf "\| $spalte1$spalte2 \| \n"
2204	zeile=$(echo "$zeile" \| cut -c41-)
2205	done
2206
2207	spalte1="compiler options:"; spalte2="$fopts"
2208	printf "\| $spalte1$spalte2 \| \n"
2209	zeile=$(echo "$fopts" \| cut -c41-)
2210	while [[ "$zeile" != "" ]]
2211	do
2212	spalte1=""
2213	spalte2=$zeile
2214	printf "\| $spalte1$spalte2 \| \n"
2215	zeile=$(echo "$zeile" \| cut -c41-)
2216	done
2217
2218	spalte1="linker options:"; spalte2=$lopts
2219	printf "\| $spalte1$spalte2 \| \n"
2220	zeile=$(echo "$lopts" \| cut -c41-)
2221	while [[ "$zeile" != "" ]]
2222	do
2223	spalte1=""
2224	spalte2=$zeile
2225	printf "\| $spalte1$spalte2 \| \n"
2226	zeile=$(echo "$zeile" \| cut -c41-)
2227	done
2228
2229	spalte1="modules to be load:"; spalte2=$modules
2230	printf "\| $spalte1$spalte2 \| \n"
2231	zeile=$(echo "$modules" \| cut -c41-)
2232	while [[ "$zeile" != "" ]]
2233	do
2234	spalte1=""
2235	spalte2=$zeile
2236	printf "\| $spalte1$spalte2 \| \n"
2237	zeile=$(echo "$zeile" \| cut -c41-)
2238	done
2239
2240	spalte1="main program":; spalte2=$mainprog
2241	printf "\| $spalte1$spalte2 \| \n"
2242	else
2243	spalte1=executable:; spalte2=$executable
2244	printf "\| $spalte1$spalte2 \| \n"
2245	fi
2246	printf "\| \| \n"
2247	spalte1="base name of files":; spalte2=$fname
2248	printf "\| $spalte1$spalte2 \| \n"
2249	if [[ $fname != $afname ]]
2250	then
2251	spalte1="base name of input files":; spalte2=$afname
2252	printf "\| $spalte1$spalte2 \| \n"
2253	fi
2254	spalte1="INPUT control list":; spalte2=$input_list
2255	printf "\| $spalte1$spalte2 \| \n"
2256	spalte1="OUTPUT control list":; spalte2=$output_list
2257	printf "\| $spalte1$spalte2 \| \n"
2258
2259	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2260	then
2261	spalte1="memory demand / PE":; spalte2="$memory MB"
2262	printf "\| $spalte1$spalte2 \| \n"
2263	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2264	printf "\| $spalte1$spalte2 \| \n"
2265	fi
2266
2267	if [[ $do_compile = true ]]
2268	then
2269	printf "\| \| \n"
2270	printf "\| Files to be compiled: \| \n"
2271	zeile=$source_list
2272	while [[ "$zeile" != "" ]]
2273	do
2274	spalte3=$zeile
2275	printf "\| $spalte3 \| \n"
2276	zeile=$(echo "$zeile" \| cut -c61-)
2277	done
2278	fi
2279	printf "#--------------------------------------------------------------#"
2280
2281
2282
2283	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2284	if [[ $do_trace = true ]]
2285	then
2286	(( i = 0 ))
2287	while (( i < iin ))
2288	do
2289	(( i = i + 1 ))
2290	if (( i == 1 ))
2291	then
2292	printf "\n\n >>> INPUT-file assignments:\n"
2293	fi
2294	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2295	done
2296	(( i = 0 ))
2297	while (( i < iout ))
2298	do
2299	(( i = i + 1 ))
2300	if (( i == 1 ))
2301	then
2302	printf "\n\n >>> OUTPUT-file assignments:\n"
2303	fi
2304	printf "\n ${localout[$i]} : ${pathout[$i]}"
2305	done
2306	(( i = 0 ))
2307	while (( i < iic ))
2308	do
2309	(( i = i + 1 ))
2310	if (( i == 1 ))
2311	then
2312	printf "\n\n >>> INPUT-commands:\n"
2313	fi
2314	printf "\n ${in_command[$i]}"
2315	done
2316	(( i = 0 ))
2317	while (( i < ioc ))
2318	do
2319	(( i = i + 1 ))
2320	if (( i == 1 ))
2321	then
2322	printf "\n\n >>> OUTPUT-commands:\n"
2323	fi
2324	printf "\n ${out_command[$i]}"
2325	done
2326	fi
2327
2328
2329	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2330	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2331	then
2332	antwort=dummy
2333	printf "\n\n"
2334	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2335	do
2336	printf " >>> everything o.k. (y/n) ? "
2337	read antwort
2338	done
2339	if [[ $antwort = n \|\| $antwort = N ]]
2340	then
2341	locat=user_abort; (( iec = 0 )); exit
2342	fi
2343	if [[ $do_batch = true ]]
2344	then
2345	printf " >>> batch-job will be created and submitted"
2346	else
2347	if [[ $local_compile = false ]]
2348	then
2349	printf " >>> MRUN will now continue to execute on this machine"
2350	else
2351	printf " >>> a test compilation will now be carried out on this machine"
2352	fi
2353	fi
2354	fi
2355
2356
2357
2358
2359	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2360	# CHENDE AKTIONEN DURCHGEFUEHRT
2361	if [[ $do_batch = false ]]
2362	then
2363
2364
2365	# TEMPORAEREN KATALOG ERZEUGEN
2366	mkdir -p $TEMPDIR
2367	chmod go+rx $TEMPDIR
2368	tmpcreate=true
2369
2370	# set striping on lustre file system
2371	# if [[ $localhost = lcsgih ]]
2372	# then
2373	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2374	# lfs getstripe $TEMPDIR
2375	# fi
2376
2377
2378	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2379	# TEMPORAERES VERZEICHNIS KOPIEREN
2380	if [[ $do_compile = true ]]
2381	then
2382
2383	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2384	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2385	if [[ $localhost = nech ]]
2386	then
2387	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2388	if mkdir -p $TEMPDIR_COMPILE
2389	then
2390	printf "\n *** \"$TEMPDIR_COMPILE\" "
2391	printf "\n is generated as temporary directory for cross compiling\n"
2392	else
2393	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2394	printf "\n needed for cross compilation failed"
2395	locat=compile
2396	exit
2397	fi
2398	else
2399	TEMPDIR_COMPILE=$TEMPDIR
2400	fi
2401
2402
2403	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2404	line=""
2405	grep "%depository_path" $config_file > tmp_mrun
2406	while read line
2407	do
2408	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2409	then
2410	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2411	then
2412	global_depository_path=`echo $line \| cut -d" " -s -f2`
2413	fi
2414	fi
2415	done < tmp_mrun
2416
2417	line=""
2418	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2419	while read line
2420	do
2421	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2422	then
2423	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2424	then
2425	local_depository_path=`echo $line \| cut -d" " -s -f2`
2426	fi
2427	fi
2428	done < tmp_mrun
2429
2430	if [[ "$local_depository_path" = "" ]]
2431	then
2432	if [[ "$global_depository_path" != "" ]]
2433	then
2434	local_depository_path=$global_depository_path
2435	else
2436	printf "\n\n +++ no depository path found in configuration file"
2437	printf "\n for local host \"$localhost\" "
2438	printf "\n please set \"\%depository_path\" in configuration file\n"
2439	locat=config_file; exit
2440	fi
2441	fi
2442	eval local_depository_path=$local_depository_path
2443	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2444	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2445
2446
2447	basename=`print $mainprog \| cut -f1 -d"."`
2448	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2449	if [[ ! -f $make_depository ]]
2450	then
2451	printf "\n"
2452	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2453	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2454	else
2455	cp $make_depository $TEMPDIR_COMPILE
2456	cd $TEMPDIR_COMPILE
2457	tar -xf $make_depository > /dev/null 2>&1
2458	cd - > /dev/null
2459	fi
2460
2461	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2462
2463	else
2464
2465	cp $executable ${TEMPDIR}/a.out
2466
2467	fi
2468
2469
2470	# WECHSEL IN TEMPORAEREN KATALOG
2471	cd $TEMPDIR
2472	printf "\n *** changed to temporary directory: $TEMPDIR"
2473
2474
2475	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2476	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2477	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2478	# ERMITTELN
2479	(( i = 0 ))
2480	while (( i < iout ))
2481	do
2482	(( i = i + 1 ))
2483	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2484	then
2485	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2486	else
2487	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2488	fi
2489	done
2490
2491
2492	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2493	if [[ $do_compile = true ]]
2494	then
2495
2496
2497	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2498	printf "\n\n\n *** compilation starts \n$striche\n"
2499	printf " *** compilation with make using following options:\n"
2500	printf " make depository: $make_depository"
2501	if [[ "$mopts" != "" ]]
2502	then
2503	printf " make options: $mopts\n"
2504	fi
2505	printf " compilername: $compiler_name\n"
2506	printf " compiler options: $fopts\n"
2507	printf " preprocessor directives: $cpp_options \n"
2508	printf " linker options: $lopts \n"
2509	if [[ "$modules" != "" ]]
2510	then
2511	printf " modules to be load: $modules \n"
2512	fi
2513	printf " source code files: $source_list \n"
2514
2515	if [[ $localhost = nech ]]
2516	then
2517	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2518	cp $TEMPDIR_COMPILE/a.out .
2519	[[ $? != 0 ]] && compile_error=true
2520	rm -rf $TEMPDIR_COMPILE
2521	elif [[ $localhost = ibmh ]]
2522	then
2523	printf " compiler is called via ssh on \"plogin1\" \n"
2524	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2525	[[ ! -f a.out ]] && compile_error=true
2526	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2527	elif [[ $localhost = lcsgib ]]
2528	then
2529	printf " compiler is called via ssh on \"bicegate0\" \n"
2530	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2531	[[ ! -f a.out ]] && compile_error=true
2532	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2533	elif [[ $localhost = lcsgih ]]
2534	then
2535	printf " compiler is called via ssh on \"hicegate0\" \n"
2536	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2537	[[ ! -f a.out ]] && compile_error=true
2538	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2539	else
2540	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2541	[[ "$module_calls" != "" ]] && eval $module_calls
2542	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2543	fi
2544
2545	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2546	then
2547	printf "\n +++ error occured while compiling or linking"
2548	locat=compile
2549
2550	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2551	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2552	# then
2553	exit
2554	# else
2555	# locat=normal
2556	# fi
2557	else
2558	printf "$striche\n *** compilation finished \n"
2559	fi
2560	fi
2561
2562
2563	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2564	if [[ $local_compile = true ]]
2565	then
2566	cd $HOME
2567	rm -rf $TEMPDIR
2568	locat=local_compile; exit
2569	fi
2570
2571
2572	# BEREITSTELLEN DER INPUT-DATEIEN
2573	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2574	(( i = 0 ))
2575	while (( i < iin ))
2576	do
2577	(( i = i + 1 ))
2578	if (( i == 1 ))
2579	then
2580	printf "\n\n *** providing INPUT-files:\n$striche"
2581	fi
2582
2583
2584	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2585	if [[ "${transin[$i]}" = unavailable ]]
2586	then
2587	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2588	then
2589	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2590	printf "\n is not available!"
2591	else
2592	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2593	printf "\n is not available!"
2594	fi
2595	continue
2596	fi
2597
2598	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2599	files_for_pes=false; datentyp=file
2600	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2601	then
2602	files_for_pes=true; datentyp=directory
2603	actionin[$i]=""
2604	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2605	then
2606	actionin[$i]=""
2607	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2608	then
2609	files_for_pes=true; datentyp=directory
2610	actionin[$i]="ar"
2611	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2612	then
2613	actionin[$i]="ar"
2614	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2615	then
2616	files_for_pes=true; datentyp=directory
2617	actionin[$i]="fl"
2618	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2619	then
2620	actionin[$i]="fl"
2621	fi
2622
2623	if [[ $files_for_pes = true ]]
2624	then
2625	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2626	else
2627	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2628	fi
2629
2630	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2631	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2632	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2633	# SERVER ZU HOLEN
2634	if [[ "${actionin[$i]}" = fl ]]
2635	then
2636	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2637	if [[ $files_for_pes = false ]]
2638	then
2639	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2640	then
2641	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2642	got_tmp[$i]=true
2643	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2644	then
2645	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2646	printf "\n *** trying to use backup copy in \"$WORK\" "
2647	cp $WORK/${frelin[$i]} ${localin[$i]}
2648	else
2649	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2650	printf "\n or \"$tmp_data_catalog\" does not exist!"
2651	printf "\n *** trying to get copy from archive"
2652	actionin[$i]=ar
2653	fi
2654	else
2655	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2656	then
2657	mkdir ${localin[$i]}
2658	cd $tmp_data_catalog/${frelin[$i]}
2659	for file in $(ls *)
2660	do
2661	ln $file $TEMPDIR/${localin[$i]}
2662	done
2663	cd $TEMPDIR
2664	got_tmp[$i]=true
2665	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2666	then
2667	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2668	printf "\n *** trying to use backup copy in \"$WORK\" "
2669	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2670	else
2671	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2672	printf "\n or \"$tmp_data_catalog\" does not exist!"
2673	printf "\n *** trying to get copy from archive"
2674	actionin[$i]=ar
2675	fi
2676	fi
2677	fi
2678
2679
2680	# DATEI LIEGT AUF ARCHIV-SERVER
2681	if [[ "${actionin[$i]}" = ar ]]
2682	then
2683
2684	if [[ $files_for_pes = false ]]
2685	then
2686	printf "\n file will be restored from archive-system ($archive_system)!"
2687	else
2688	printf "\n directory will be restored from archive-system ($archive_system)!"
2689	fi
2690
2691	file_restored=false
2692
2693	if [[ $archive_system = asterix ]]
2694	then
2695	do_stagein=true
2696	(( stagein_anz = 0 ))
2697	while [[ $do_stagein = true ]]
2698	do
2699	if [[ $files_for_pes = false ]]
2700	then
2701	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2702	else
2703	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2704	fi
2705	cat STAGEIN_OUTPUT
2706	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2707	then
2708	file_restored=true
2709	do_stagein=false
2710	else
2711	(( stagein_anz = stagein_anz + 1 ))
2712	if (( stagein_anz == 10 ))
2713	then
2714	printf "\n +++ stagein stoped after 10 tries"
2715	locat=stage
2716	exit
2717	fi
2718	printf "\n +++ restoring from archive failed, trying again:"
2719	sleep 900
2720	fi
2721	done
2722	elif [[ $archive_system = DMF ]]
2723	then
2724	if [[ $files_for_pes = false ]]
2725	then
2726	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2727	locat=DMF
2728	exit
2729	else
2730	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2731	cp -r $ARCHIVE/${frelin[$i]} $PWD
2732	file_restored=true
2733	fi
2734	elif [[ $archive_system = tivoli ]]
2735	then
2736	if [[ $files_for_pes = false ]]
2737	then
2738	if [[ $localhost = lcsgih ]]
2739	then
2740	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2741	else
2742	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2743	fi
2744	else
2745	(( inode = 0 ))
2746	while (( inode < nodes ))
2747	do
2748	if [[ $localhost = lcsgih ]]
2749	then
2750	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2751	else
2752	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2753	fi
2754	(( inode = inode + 1 ))
2755	done
2756	fi
2757	file_restored=true
2758	elif [[ $archive_system = ut ]]
2759	then
2760	if [[ $files_for_pes = false ]]
2761	then
2762	cp $UT/${frelin[$i]} .
2763	else
2764	(( inode = 0 ))
2765	while (( inode < nodes ))
2766	do
2767	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2768	(( inode = inode + 1 ))
2769	done
2770	fi
2771	file_restored=true
2772	else
2773	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2774	locat=rearchive
2775	exit
2776	fi
2777
2778	if [[ $file_restored = true ]]
2779	then
2780
2781	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2782	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2783	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2784	if [[ $files_for_pes = false ]]
2785	then
2786	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2787	else
2788	mkdir $tmp_data_catalog/${frelin[$i]}
2789	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2790	fi
2791	got_tmp[$i]=true
2792
2793	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2794	mv ${frelin[$i]} ${localin[$i]}
2795
2796	fi
2797	fi
2798
2799
2800	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2801	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2802	then
2803
2804	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2805	then
2806
2807	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2808	printf "\n file will be provided for $numprocs processors"
2809	mkdir ${localin[$i]}
2810	ival=$numprocs
2811	(( ii = 0 ))
2812	while (( ii <= ival-1 ))
2813	do
2814	if (( ii < 10 ))
2815	then
2816	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2817	elif (( ii < 100 ))
2818	then
2819	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2820	elif (( ii < 1000 ))
2821	then
2822	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2823	else
2824	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2825	fi
2826	(( ii = ii + 1 ))
2827	done
2828
2829	else
2830
2831	if [[ $files_for_pes = true ]]
2832	then
2833
2834	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2835	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2836	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2837	# PER MOVE UMBENANNT WERDEN
2838	printf "\n providing $numprocs files for the respective processors"
2839	mkdir ${localin[$i]}
2840	if [[ $link_local_input = true ]]
2841	then
2842	printf " using ln -f\n"
2843	cd ${absnamein[$i]}
2844	for file in $(ls *)
2845	do
2846	ln -f $file ${localin[$i]}
2847	done
2848	cd $TEMPDIR
2849	fi
2850	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2851	if [[ ! -f "${localin[$i]}/_0000" ]]
2852	then
2853	if [[ $link_local_input = true ]]
2854	then
2855	printf " ln failed for .../_0000, using cp...\n"
2856	fi
2857	cp -r ${absnamein[$i]}/* ${localin[$i]}
2858	fi
2859
2860	else
2861	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2862	if [[ $link_local_input = true ]]
2863	then
2864	printf " using ln -f\n"
2865	ln -f ${absnamein[$i]} ${localin[$i]}
2866	fi
2867	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2868	if [[ ! -f "${localin[$i]}" ]]
2869	then
2870	if [[ $link_local_input = true ]]
2871	then
2872	printf " ln failed, using cp...\n"
2873	fi
2874	cp ${absnamein[$i]} ${localin[$i]}
2875	fi
2876	fi
2877	fi
2878	fi
2879
2880	done
2881	if (( i != 0 ))
2882	then
2883	printf "\n$striche\n *** all INPUT-files provided \n"
2884	fi
2885
2886
2887	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2888	(( i = 0 ))
2889	while (( i < iic ))
2890	do
2891	(( i = i + 1 ))
2892	if (( i == 1 ))
2893	then
2894	printf "\n\n *** execution of INPUT-commands:\n$striche"
2895	fi
2896	printf "\n >>> ${in_command[$i]}"
2897	eval ${in_command[$i]}
2898	if (( i == iic ))
2899	then
2900	printf "\n$striche\n"
2901	fi
2902	done
2903
2904
2905	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2906	cpurest=${cpumax}.
2907
2908
2909	# START DVR STREAMING SERVER
2910	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2911	then
2912	if [[ "$dvr_server" != "" ]]
2913	then
2914
2915	printf "\n\n *** preparing the dvr streaming server configuration file"
2916
2917	# Check, if a dvr server is already running
2918	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2919	if [[ "$running_dvrserver_id" != "" ]]
2920	then
2921
2922	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2923	printf "\n This server is used instead starting a new one!"
2924	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2925
2926	else
2927
2928	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2929	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2930	then
2931	cp ${PALM_BIN}/.dvrserver.config .
2932
2933	# Entering the BASEDIR, UID and GID into this file
2934	user_id=`id -u`
2935	group_id=`id -g`
2936	# & is needed as seperator, because TEMPDIR contains /
2937	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2938	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2939	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2940	mv .dvrserver.3 .dvrserver.config
2941	rm .dvrserver.1 .dvrserver.2
2942
2943	# Start dvr server in background, get his id and print on terminal
2944	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2945	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2946	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2947	local_dvrserver_running=.TRUE.
2948	else
2949	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2950	printf "\n \"$PALM_BIN\" "
2951	locat=dvr
2952	exit
2953	fi
2954
2955	fi
2956
2957	else
2958	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2959	fi
2960	fi
2961
2962
2963	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2964	# LESEN VON PALM)
2965	cat > ENVPAR << %%END%%
2966	&envpar run_identifier = '$fname', host = '$localhost',
2967	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2968	maximum_cpu_time_allowed = ${cpumax}.,
2969	revision = '$global_revision',
2970	local_dvrserver_running = $local_dvrserver_running /
2971
2972	%%END%%
2973
2974
2975	# PROGRAMMSTART
2976	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2977	PATH=$PATH:$TEMPDIR
2978
2979	# MPI debug option (argument checking, slows down execution due to increased latency)
2980	if [[ "$mpi_debug" = true ]]
2981	then
2982	export MPI_CHECK_ARGS=1
2983	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
2984	fi
2985
2986	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2987	then
2988	if [[ "$ENVIRONMENT" = BATCH ]]
2989	then
2990	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2991	then
2992	printf "\n +++ debug is allowed in interactive mode only"
2993	locat=debug
2994	exit
2995	fi
2996	fi
2997	if [[ $localhost = decalpha ]]
2998	then
2999	dxladebug a.out
3000	elif [[ $localhost = ibmh ]]
3001	then
3002
3003	# SETUP THE IBM MPI ENVIRONMENT
3004	export MP_SHARED_MEMORY=yes
3005	export AIXTHREADS_SCOPE=S
3006	export OMP_NUM_THREADS=$threads_per_task
3007	export AUTHSTATE=files
3008	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3009
3010	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3011	export MP_ADAPTER_USE=shared
3012	export MP_CPU_USE=multiple
3013	export MP_TIMEOUT=1200
3014
3015	unset MP_TASK_AFFINITY
3016
3017	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3018	#(( ii = 1 ))
3019	#while (( ii <= $numprocs ))
3020	#do
3021	# echo $localhost_realname >> hostfile
3022	# (( ii = ii + 1 ))
3023	#done
3024	#export MP_HOSTFILE=hostfile
3025
3026	if [[ "$LOADLBATCH" = yes ]]
3027	then
3028	totalview poe a.out $ROPTS
3029	else
3030	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3031	export TVDSVRLAUNCHCMD=ssh
3032	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3033	fi
3034	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3035	then
3036	# CURRENTLY NO DEBUGGER ON LCSGI
3037	if [[ $run_coupled_model = true ]]
3038	then
3039	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3040	locat=debug
3041	exit
3042	else
3043	echo "no_coupling" > runfile_atmos
3044	fi
3045	(( ii = $numprocs / $threads_per_task ))
3046	export OMP_NUM_THREADS=$threads_per_task
3047	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3048	if [[ $threads_per_task != 1 ]]
3049	then
3050	printf "\n threads per task: $threads_per_task"
3051	fi
3052	printf "\n\n"
3053	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3054	then
3055	# export MPI_LAUNCH_TIMEOUT=360
3056	if [[ "$totalview" = true ]]
3057	then
3058	printf "\n running totalview debugger"
3059	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
3060	else
3061	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3062	fi
3063	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3064	then
3065	# ulimit -s 300000 # A too large stack size causes problems
3066	# export MV2_NUM_PORTS=2
3067	# export MV2_CPU_MAPPING=0:1:2:3
3068	if [[ "$totalview" = true ]]
3069	then
3070	printf "\n running totalview debugger"
3071	mpiexec -tv ./a.out $ROPTS < runfile_atmos
3072	else
3073	mpiexec ./a.out $ROPTS < runfile_atmos
3074	fi
3075	fi
3076	else
3077	printf "\n +++ no debug available on \"$localhost\" "
3078	printf "\n or not implemented in mrun so far"
3079	locat=debug
3080	exit
3081	fi
3082
3083	# end debug mode
3084	else
3085
3086	# normal execution
3087	if [[ -n $numprocs ]]
3088	then
3089	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3090	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3091	then
3092	# SETUP THE IBM MPI ENVIRONMENT
3093	if [[ $host != ibmh ]]
3094	then
3095	export MP_SHARED_MEMORY=yes
3096	export AIXTHREAD_SCOPE=S
3097	export OMP_NUM_THREADS=$threads_per_task
3098	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3099	export AUTHSTATE=files
3100	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3101	# export MP_PRINTENV=yes
3102
3103	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3104	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3105	export MP_WAIT_MODE=poll
3106	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3107	fi
3108	if [[ "$LOADLBATCH" = yes ]]
3109	then
3110	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3111	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3112	then
3113	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3114	else
3115	if [[ $run_coupled_model = false ]]
3116	then
3117	if [[ "$ocean_file_appendix" = true ]]
3118	then
3119	echo "precursor_ocean" > runfile_atmos
3120	else
3121	echo "precursor_atmos" > runfile_atmos
3122	fi
3123	else
3124	(( iia = $numprocs_atmos / $threads_per_task ))
3125	(( iio = $numprocs_ocean / $threads_per_task ))
3126	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3127	printf "\n using $coupled_mode coupling"
3128	printf "\n\n"
3129	echo "coupled_run $iia $iio" > runfile_atmos
3130	fi
3131	poe ./a.out $ROPTS < runfile_atmos
3132	fi
3133	else
3134	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3135	then
3136	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3137	elif [[ $localhost = ibmku \|\| $localhost = ibmy ]]
3138	then
3139	if [[ -f $hostfile ]]
3140	then
3141	cp $hostfile hostfile
3142	else
3143	(( ii = 1 ))
3144	while (( ii <= $numprocs ))
3145	do
3146	echo $localhost_realname >> hostfile
3147	(( ii = ii + 1 ))
3148	done
3149	fi
3150	export MP_HOSTFILE=hostfile
3151	if [[ $run_coupled_model = false ]]
3152	then
3153	if [[ "$ocean_file_appendix" = true ]]
3154	then
3155	echo "precursor_ocean" > runfile_atmos
3156	else
3157	echo "precursor_atmos" > runfile_atmos
3158	fi
3159	else
3160	(( iia = $numprocs_atmos / $threads_per_task ))
3161	(( iio = $numprocs_ocean / $threads_per_task ))
3162	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3163	printf "\n using $coupled_mode coupling"
3164	printf "\n\n"
3165	echo "coupled_run $iia $iio" > runfile_atmos
3166	fi
3167	if [[ $localhost = ibmy ]]
3168	then
3169	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3170	else
3171	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3172	fi
3173
3174	else
3175	if [[ "$host_file" = "" ]]
3176	then
3177	printf "\n +++ no hostfile given in configuration file"
3178	locat=config_file
3179	exit
3180	else
3181	eval host_file=$host_file
3182	fi
3183	export MP_HOSTFILE=$host_file
3184	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3185	fi
3186	fi
3187	elif [[ $host = nech \|\| $host = necriam ]]
3188	then
3189	(( ii = nodes ))
3190	if [[ $ii = 1 ]]
3191	then
3192	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3193	export MPIPROGINF=YES
3194	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3195	echo "*** execution on single node with mpirun"
3196	mpirun -np $numprocs ./a.out $ROPTS
3197	else
3198	(( i = 0 ))
3199	while (( i < ii ))
3200	do
3201	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3202	(( i = i + 1 ))
3203	done
3204
3205	echo "#!/bin/sh" > mpi_exec_shell
3206	echo " " >> mpi_exec_shell
3207	echo "set -u" >> mpi_exec_shell
3208	echo "F_ERRCNT=0" >> mpi_exec_shell
3209	echo "MPIPROGINV=YES" >> mpi_exec_shell
3210	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3211	echo "cpurest=$cpurest" >> mpi_exec_shell
3212	echo "fname=$fname" >> mpi_exec_shell
3213	echo "localhost=$localhost" >> mpi_exec_shell
3214	echo "return_addres=$return_addres" >> mpi_exec_shell
3215	echo "return_username=$return_username" >> mpi_exec_shell
3216	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3217	echo "write_binary=$write_binary" >> mpi_exec_shell
3218	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3219	echo " " >> mpi_exec_shell
3220	echo "export F_ERRCNT" >> mpi_exec_shell
3221	echo "export MPIPROGINV" >> mpi_exec_shell
3222	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3223	echo "export cpurest" >> mpi_exec_shell
3224	echo "export fname" >> mpi_exec_shell
3225	echo "export localhost" >> mpi_exec_shell
3226	echo "export return_addres" >> mpi_exec_shell
3227	echo "export return_username" >> mpi_exec_shell
3228	echo "export tasks_per_node" >> mpi_exec_shell
3229	echo "export write_binary" >> mpi_exec_shell
3230	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3231	echo " " >> mpi_exec_shell
3232	echo "exec ./a.out" >> mpi_exec_shell
3233
3234	chmod u+x mpi_exec_shell
3235	export MPIPROGINF=YES
3236	mpirun -f multinode_config &
3237	wait
3238
3239	fi
3240	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3241	then
3242
3243	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3244	# DOES NOT EXIST
3245	if [[ $host != lcsgih && $host != lcsgib ]]
3246	then
3247	if [[ -f $hostfile ]]
3248	then
3249	cp $hostfile hostfile
3250	else
3251	(( ii = 1 ))
3252	while (( ii <= $numprocs / $threads_per_task ))
3253	do
3254	echo $localhost_realname >> hostfile
3255	(( ii = ii + 1 ))
3256	done
3257	fi
3258	eval zeile=\"`head -n $ii hostfile`\"
3259	printf "\n *** running on: $zeile"
3260	fi
3261
3262	(( ii = $numprocs / $threads_per_task ))
3263	export OMP_NUM_THREADS=$threads_per_task
3264	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3265	if [[ $threads_per_task != 1 ]]
3266	then
3267	# increase stack size to unlimited, because large runs
3268	# may abort otherwise
3269	ulimit -Ss unlimited
3270	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3271	fi
3272	if [[ $run_coupled_model = false ]]
3273	then
3274	if [[ "$ocean_file_appendix" = true ]]
3275	then
3276	echo "precursor_ocean" > runfile_atmos
3277	else
3278	echo "precursor_atmos" > runfile_atmos
3279	fi
3280	printf "\n\n"
3281	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3282	then
3283	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3284	then
3285	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3286	# export MPI_DSM_DISTRIBUTE=1
3287	# MPI_DSM_CPULIST: pin MPI processes to cores
3288	if [[ $use_openmp = false ]]
3289	then
3290	if [[ "$sgi_feature" = ice2 ]]
3291	then
3292	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3293	else
3294	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3295	fi
3296	else
3297	unset MPI_DSM_CPULIST
3298	fi
3299	# MPI_IB_RAILS: use both IB rails on ICE2
3300	export MPI_BUFS_PER_HOST=512
3301	export MPI_IB_RAILS=2
3302	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3303	export MPI_CONNECTIONS_THRESHOLD=8192
3304	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3305	export MPI_TYPE_DEPTH=20
3306	echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3307	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3308
3309	# next is test for openmp usage
3310	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3311	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3312	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3313	then
3314	export MV2_NUM_PORTS=2
3315	# The default setting of MV2_CPU_MAPPING gives best results
3316	# export MV2_ENABLE_AFFINITY=1
3317	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3318	# if [[ "$sgi_feature" = ice2 ]]
3319	# then
3320	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3321	# else
3322	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3323	# fi
3324	if [[ $use_openmp = true ]]
3325	then
3326	unset MV2_CPU_MAPPING
3327	export MV2_ENABLE_AFFINITY=0
3328	fi
3329	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3330	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3331	if [[ $use_openmp = true ]]
3332	then
3333	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3334	mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3335	else
3336	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
3337	fi
3338	fi
3339	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3340	then
3341	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3342	else
3343	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3344	fi
3345	else
3346
3347	# currently there is no full MPI-2 support on ICE and XT4
3348	(( iia = $numprocs_atmos / $threads_per_task ))
3349	(( iio = $numprocs_ocean / $threads_per_task ))
3350	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3351	printf "\n using $coupled_mode coupling"
3352	printf "\n\n"
3353
3354	if [[ $coupled_mode = "mpi2" ]]
3355	then
3356	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3357	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3358	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3359	then
3360
3361	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3362	then
3363	# export MPI_LAUNCH_TIMEOUT=360
3364	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3365	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3366	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3367	then
3368	# ulimit -s 300000 # A too large stack size causes problems
3369	# export MV2_NUM_PORTS=2
3370	# export MV2_CPU_MAPPING=0:1:2:3
3371	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3372	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3373	fi
3374
3375	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3376	then
3377
3378	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3379	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3380
3381	else
3382	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3383	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3384	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3385	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3386	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3387	fi
3388	wait
3389
3390	else
3391
3392	echo "coupled_run $iia $iio" > runfile_atmos
3393	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3394	then
3395
3396	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3397	then
3398	# export MPI_LAUNCH_TIMEOUT=360
3399	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3400	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3401	then
3402	# ulimit -s 300000 # A too large stack size causes problems
3403	# export MV2_NUM_PORTS=2
3404	# export MV2_CPU_MAPPING=0:1:2:3
3405	mpiexec ./a.out $ROPTS < runfile_atmos
3406	fi
3407
3408	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3409	then
3410
3411	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3412
3413	elif [[ $host = lck ]]
3414	then
3415	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3416	fi
3417	wait
3418	fi
3419
3420	fi
3421	elif [[ $host = decalpha ]]
3422	then
3423	dmpirun -np $numprocs a.out $ROPTS
3424	elif [[ $host = lckyoto ]]
3425	then
3426	set -xv
3427	export P4_RSHCOMMAND=plesh
3428	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3429	if [[ "$ENVIRONMENT" = BATCH ]]
3430	then
3431	if [[ "$cond2" = fujitsu ]]
3432	then
3433	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3434	elif [[ "cond2" = pgi ]]
3435	then
3436	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3437	else
3438	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3439	fi
3440	else
3441	if [[ "$cond2" = "" ]]
3442	then
3443	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3444	else
3445	mpirun -np $numprocs ./a.out $ROPTS
3446	fi
3447	fi
3448	set +xv
3449	elif [[ $host = lctit ]]
3450	then
3451	export OMP_NUM_THREADS=$threads_per_task
3452	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3453	if [[ "$threads_per_task" != 1 ]]
3454	then
3455	export MV2_ENABLE_AFFINITY=0
3456	fi
3457	echo "----- PBS_NODEFILE content:"
3458	cat $PBS_NODEFILE
3459	echo "-----"
3460	(( ii = $numprocs / $threads_per_task ))
3461	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3462	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3463	else
3464	mpprun -n $numprocs a.out $ROPTS
3465	fi
3466	[[ $? != 0 ]] && execution_error=true
3467
3468
3469	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3470	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3471	then
3472	apprentice
3473	fi
3474	else
3475	a.out $ROPTS
3476	fi
3477	fi
3478	if [[ $? != 0 \|\| $execution_error = true ]]
3479	then
3480
3481	# ABBRUCH BEI LAUFZEITFEHLER
3482	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3483	printf "\n +++ runtime error occured"
3484	locat=execution
3485	exit
3486	else
3487	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3488	printf "\n$striche\n *** execution finished \n"
3489
3490	# Stop the dvr streaming server and process the dvr output in order
3491	# to create dvrs- and html-files containing all streams
3492	if [[ "$dvrserver_id" != "" ]]
3493	then
3494	kill $dvrserver_id
3495	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3496
3497	# If there is a directory, data have been output by the
3498	# streaming server. Otherwise, user has chosen dvrp_output=local
3499	if [[ -d DATA_DVR ]]
3500	then
3501
3502	# Add the current dvr configuration file to the dvr output
3503	# directory
3504	cp .dvrserver.config DATA_DVR
3505
3506	# Process the dvr output (option -s for also generating
3507	# sequence mode data)
3508	process_dvr_output -d DATA_DVR -f $fname -s
3509
3510	else
3511
3512	# Process the local output
3513	process_dvr_output -l -d DATA_DVR -f $fname
3514
3515	fi
3516
3517	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3518	then
3519
3520	# Process dvr output generated in local mode (dvrp_output=local)
3521	process_dvr_output -l -d DATA_DVR -f $fname
3522
3523	fi
3524	fi
3525
3526
3527
3528	# Call of combine_plot_fields in order to merge single files written
3529	# by each PE into one file.
3530	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3531	then
3532	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3533	printf "\n 2d- and/or 3d-data may be incomplete!"
3534	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3535	else
3536	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3537	combine_plot_fields${block}.x
3538	fi
3539
3540
3541
3542	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3543	(( i = 0 ))
3544	while (( i < ioc ))
3545	do
3546	(( i = i + 1 ))
3547	if (( i == 1 ))
3548	then
3549	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3550	fi
3551	printf "\n >>> ${out_command[$i]}"
3552	eval ${out_command[$i]}
3553	if (( i == ioc ))
3554	then
3555	printf "\n$striche\n"
3556	fi
3557	done
3558
3559
3560	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3561	if [[ $do_trace = true ]]
3562	then
3563	printf "\n\n"
3564	ls -al
3565	fi
3566
3567
3568
3569	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3570	(( i = 0 ))
3571	while (( i < iout ))
3572	do
3573	(( i = i + 1 ))
3574	if (( i == 1 ))
3575	then
3576	printf "\n\n *** saving OUTPUT-files:\n$striche"
3577	fi
3578
3579	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3580	files_for_pes=false; filetyp=file
3581	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3582	then
3583	files_for_pes=true; filetyp=directory
3584	actionout[$i]=""
3585	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3586	then
3587	actionout[$i]=""
3588	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3589	then
3590	files_for_pes=true; filetyp=directory
3591	actionout[$i]="ar"
3592	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3593	then
3594	actionout[$i]="ar"
3595	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3596	then
3597	files_for_pes=true; filetyp=directory
3598	actionout[$i]="fl"
3599	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3600	then
3601	actionout[$i]="fl"
3602	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3603	then
3604	files_for_pes=true; filetyp=directory
3605	actionout[$i]="tr"
3606	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3607	then
3608	actionout[$i]="tr"
3609	fi
3610
3611	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3612	then
3613	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3614	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3615	then
3616	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3617	else
3618
3619
3620	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3621	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3622	# REMOTE-RECHNUNGEN
3623	if [[ "${actionout[$i]}" = tr ]]
3624	then
3625	if [[ $localhost != $fromhost ]]
3626	then
3627	if [[ $files_for_pes = false ]]
3628	then
3629	cps=""
3630	cst=""
3631	else
3632	cps=-c
3633	cst="/"
3634	fi
3635	if [[ $localhost = nech ]]
3636	then
3637
3638	# TRANSFER IN EIGENSTAENDIGEM JOB
3639	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3640	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3641	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3642	if [[ $files_for_pes = false ]]
3643	then
3644	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3645	else
3646	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3647	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3648	fi
3649
3650	echo "set -x" > transfer_${localout[$i]}
3651	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3652
3653	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3654	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3655	printf "\n or higher cycle\n"
3656	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3657
3658	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3659
3660	if [[ $localhost = nech ]]
3661	then
3662	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3663	else
3664	if [[ "$LOGNAME" = b323013 ]]
3665	then
3666	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3667	else
3668	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3669	fi
3670	fi
3671
3672	else
3673
3674	# TRANSFER INNERHALB DIESES JOBS
3675	transfer_failed=false
3676	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3677	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3678	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3679	[[ $? != 0 ]] && transfer_failed=true
3680
3681	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3682	# LOKALER MASCHINE ANLEGEN
3683	if [[ $transfer_failed = true ]]
3684	then
3685	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3686	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3687
3688	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3689	# ANLEGEN.
3690	eval local_catalog=${pathout[$i]}
3691	if [[ ! -d $local_catalog ]]
3692	then
3693	printf " *** local directory does not exist. Trying to create:\n"
3694	printf " $local_catalog \n"
3695	mkdir -p $local_catalog
3696	fi
3697	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3698	transfer_problems=true
3699	fi
3700	fi
3701	else
3702
3703	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3704	actionout[$i]=""
3705	fi
3706	fi
3707
3708
3709	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3710	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3711	# REMOTE-RECHNUNGEN
3712	if [[ "${actionout[$i]}" = tra ]]
3713	then
3714	if [[ $localhost != $fromhost ]]
3715	then
3716	if [[ $localhost = ibmh \|\| $localhost = nech ]]
3717	then
3718
3719	# TRANSFER IN EIGENSTAENDIGEM JOB
3720	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3721	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3722	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3723	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3724
3725	echo "set -x" > transfer_${localout[$i]}
3726	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3727
3728	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3729	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3730	printf "\n or higher cycle\n"
3731	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3732
3733	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3734
3735	if [[ $localhost = nech ]]
3736	then
3737	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3738	else
3739	if [[ $LOGNAME = b323013 ]]
3740	then
3741	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3742	else
3743	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3744	fi
3745	fi
3746
3747	else
3748
3749	# TRANSFER INNERHALB DIESES JOBS
3750	transfer_failed=false
3751	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3752	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3753	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3754	[[ $? != 0 ]] && transfer_failed=true
3755
3756	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3757	# LOKALER MASCHINE ANLEGEN
3758	if [[ $transfer_failed = true ]]
3759	then
3760	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3761	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3762
3763	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3764	# ANLEGEN
3765	eval local_catalog=${pathout[$i]}
3766	if [[ ! -d $local_catalog ]]
3767	then
3768	printf " *** local directory does not exist. Trying to create:\n"
3769	printf " $local_catalog \n"
3770	mkdir -p $local_catalog
3771	fi
3772
3773	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3774	transfer_problems=true
3775	fi
3776	fi
3777	else
3778
3779	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3780	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3781	actionout[$i]=a
3782	fi
3783	fi
3784
3785
3786	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3787	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3788	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3789	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3790	if [[ "${actionout[$i]}" = fl ]]
3791	then
3792	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3793	chmod g+rx $tmp_data_catalog
3794	if [[ $files_for_pes = false ]]
3795	then
3796	printf "\n >>> OUTPUT: ${localout[$i]} to"
3797	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3798	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3799	else
3800	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3801	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3802	mkdir $tmp_data_catalog/${frelout[$i]}
3803	cd ${localout[$i]}
3804	for file in $(ls *)
3805	do
3806	ln -f $file $tmp_data_catalog/${frelout[$i]}
3807	done
3808	cd $TEMPDIR
3809	fi
3810
3811
3812	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3813	if [[ $store_on_archive_system = true ]]
3814	then
3815
3816	if [[ $archive_system = asterix ]]
3817	then
3818	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3819	if [[ $files_for_pes = false ]]
3820	then
3821	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3822	else
3823	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3824	fi
3825	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3826	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3827	echo "then" >> archive_${frelout[$i]}
3828	echo " do_stageout=false" >> archive_${frelout[$i]}
3829	echo "else" >> archive_${frelout[$i]}
3830	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3831	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3832	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3833	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3834	if [[ $files_for_pes = false ]]
3835	then
3836	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3837	else
3838	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3839	fi
3840	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3841	echo "fi" >> archive_${frelout[$i]}
3842	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3843	elif [[ $archive_system = DMF ]]
3844	then
3845	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3846	if [[ $files_for_pes = false ]]
3847	then
3848	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3849	locat=DMF
3850	exit
3851	else
3852	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3853	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3854	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3855	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3856	fi
3857	elif [[ $archive_system = tivoli ]]
3858	then
3859	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3860	if [[ $files_for_pes = false ]]
3861	then
3862	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3863	echo "set -x" >> archive_${frelout[$i]}
3864	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3865	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3866	else
3867
3868	echo "set -x" >> archive_${frelout[$i]}
3869	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3870	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3871	cd $tmp_data_catalog
3872	all_files=`ls -1 ${frelout[$i]}/*`
3873	cd - > /dev/null
3874	(( inode = 0 ))
3875	(( tp1 = tasks_per_node + 1 ))
3876	while (( inode < nodes ))
3877	do
3878	# echo "*** all_files = \"$all_files\" "
3879	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3880	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3881	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3882	# echo "*** files = \"$files\" "
3883	# echo "*** all_files = \"$all_files\" "
3884	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3885	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3886	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3887	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3888	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3889	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3890	(( inode = inode + 1 ))
3891	done
3892	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3893	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3894	fi
3895	elif [[ $archive_system = ut ]]
3896	then
3897	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3898	if [[ $files_for_pes = false ]]
3899	then
3900	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3901	echo "set -x" >> archive_${frelout[$i]}
3902	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3903	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3904	else
3905
3906	echo "set -x" >> archive_${frelout[$i]}
3907	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3908	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3909	cd $tmp_data_catalog
3910	all_files=`ls -1 ${frelout[$i]}/*`
3911	cd - > /dev/null
3912	(( inode = 0 ))
3913	(( tp1 = tasks_per_node + 1 ))
3914	while (( inode < nodes ))
3915	do
3916	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3917	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3918	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3919	(( inode = inode + 1 ))
3920	done
3921	fi
3922	elif [[ $archive_system = none ]]
3923	then
3924	printf " +++ archiving on $localhost not available!\n"
3925	fi
3926
3927	if [[ $archive_system != none ]]
3928	then
3929	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3930	then
3931	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3932	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
3933	elif [[ $localhost = nech ]]
3934	then
3935	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3936	fi
3937	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3938	fi
3939	else
3940	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
3941	fi
3942
3943
3944	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3945	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3946	if [[ $files_for_pes = false ]]
3947	then
3948	cat /dev/null > ${pathout[$i]}
3949	else
3950	mkdir -p ${pathout[$i]}
3951	fi
3952
3953	fi
3954
3955
3956	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3957	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3958	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3959	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3960	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3961	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3962	if [[ "${actionout[$i]}" = ar ]]
3963	then
3964	if [[ $files_for_pes = false ]]
3965	then
3966	printf "\n >>> OUTPUT: ${localout[$i]} to"
3967	printf "\n ${pathout[$i]}"
3968	printf "\n File will be copied to archive-system ($archive_system) !\n"
3969	else
3970	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3971	printf "\n ${pathout[$i]}"
3972	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3973	fi
3974	mv ${localout[$i]} ${frelout[$i]}
3975
3976	file_saved=false
3977
3978	if [[ $archive_system = asterix ]]
3979	then
3980	do_stageout=true
3981	(( stageout_anz = 0 ))
3982	while [[ $do_stageout = true ]]
3983	do
3984	if [[ $files_for_pes = false ]]
3985	then
3986	stageout ${frelout[$i]} > STAGE_OUTPUT
3987	else
3988	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3989	fi
3990	cat STAGE_OUTPUT
3991	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3992	then
3993	file_saved=true
3994	do_stageout=false
3995	else
3996	if [[ $files_for_pes = false ]]
3997	then
3998	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3999	else
4000	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4001	fi
4002	(( stageout_anz = stageout_anz + 1 ))
4003	if (( stageout_anz == 10 ))
4004	then
4005	printf "\n +++ stoped after 10 unsuccessful tries!"
4006	archive_save=false
4007	do_stageout=false
4008	else
4009	printf "\n *** new try to store on archive after 15 min:"
4010	sleep 900
4011	fi
4012	fi
4013	done
4014	elif [[ $archive_system = DMF ]]
4015	then
4016	if [[ $files_for_pes = false ]]
4017	then
4018	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4019	locat=DMF
4020	exit
4021	else
4022	rm -rf $ARCHIVE/${frelout[$i]}
4023	cp -r ${frelout[$i]} $ARCHIVE
4024	fi
4025	file_saved=true
4026	elif [[ $archive_system = tivoli ]]
4027	then
4028	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4029	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4030	# GELEGT WERDEN
4031	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4032	chmod g+rx $tmp_data_catalog
4033	if [[ $files_for_pes = false ]]
4034	then
4035	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4036	else
4037	mkdir $tmp_data_catalog/${frelout[$i]}
4038	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4039	fi
4040
4041	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4042	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4043	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4044	if [[ $files_for_pes = false ]]
4045	then
4046	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4047	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4048	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4049	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4050	else
4051	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4052	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4053	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4054	fi
4055
4056	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4057	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4058	file_saved=true
4059
4060	elif [[ $archive_system = ut ]]
4061	then
4062	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4063	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4064	# GELEGT WERDEN
4065	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4066	chmod g+rx $tmp_data_catalog
4067	if [[ $files_for_pes = false ]]
4068	then
4069	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4070	else
4071	mkdir $tmp_data_catalog/${frelout[$i]}
4072	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4073	fi
4074
4075	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4076	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4077	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4078	if [[ $files_for_pes = false ]]
4079	then
4080	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4081	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4082	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4083	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4084	else
4085	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4086	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4087	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4088	fi
4089
4090	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4091	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4092	file_saved=true
4093
4094	else
4095	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4096	archive_save=false
4097	fi
4098	if [[ $file_saved = true ]]
4099	then
4100	if [[ $files_for_pes = false ]]
4101	then
4102	cat /dev/null > ${pathout[$i]}
4103	else
4104	mkdir -p ${pathout[$i]}
4105	fi
4106	fi
4107	fi
4108
4109	# APPEND AUF LOKALER MASCHINE
4110	if [[ "${actionout[$i]}" = "a" ]]
4111	then
4112	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4113	cat ${localout[$i]} >> ${pathout[$i]}
4114	fi
4115
4116	# KOPIEREN AUF LOKALER MASCHINE
4117	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4118	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4119	then
4120
4121	# KOPIEREN AUF EINPROZESSORMASCHINE
4122	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4123	then
4124	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4125	if [[ $link_local_output = true ]]
4126	then
4127	printf " using ln -f\n"
4128	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4129	fi
4130	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4131	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4132	then
4133	if [[ $link_local_output = true ]]
4134	then
4135	printf " ln failed, using cp...\n"
4136	fi
4137	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4138	fi
4139	else
4140	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4141	if [[ $link_local_output = true ]]
4142	then
4143	printf " using ln -f\n"
4144	ln -f ${localout[$i]} ${pathout[$i]}
4145	fi
4146	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4147	if [[ ! -f "${pathout[$i]}" ]]
4148	then
4149	if [[ $link_local_output = true ]]
4150	then
4151	printf " ln failed, using cp...\n"
4152	fi
4153	cp ${localout[$i]} ${pathout[$i]}
4154	fi
4155	fi
4156
4157	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4158	then
4159
4160	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4161	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4162	# WIRD DANN KOPIERT
4163	# PER MOVE UMBENANNT WERDEN
4164	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4165	if [[ $link_local_output = true ]]
4166	then
4167	printf " using ln -f\n"
4168	mkdir ${pathout[$i]}
4169	cd ${localout[$i]}
4170	for file in $(ls *)
4171	do
4172	ln -f $file ${pathout[$i]}
4173	done
4174	cd $TEMPDIR
4175	fi
4176	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4177	if [[ ! -f "${pathout[$i]}/_0000" ]]
4178	then
4179	if [[ $link_local_output = true ]]
4180	then
4181	printf " ln failed for .../_0000, using cp...\n"
4182	fi
4183	cp -r ${localout[$i]} ${pathout[$i]}
4184	fi
4185
4186	fi
4187	fi
4188	done
4189	if (( i != 0 ))
4190	then
4191	if [[ $transfer_problems = true ]]
4192	then
4193	printf "\n$striche\n *** OUTPUT-files saved"
4194	printf "\n +++ WARNING: some data transfers failed! \n"
4195	else
4196	printf "\n$striche\n *** all OUTPUT-files saved \n"
4197	fi
4198	fi
4199
4200
4201	# EVENTUELL FOLGEJOB STARTEN
4202	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4203	if [[ -f CONTINUE_RUN ]]
4204	then
4205
4206	if [[ $archive_save = true ]]
4207	then
4208
4209	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4210	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4211	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4212	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4213	# HANDEN
4214	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4215	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4216	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4217	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4218	then
4219	mc=`echo $mc \| sed 's/#/f/g'`
4220	fi
4221
4222
4223	# JOB STARTEN
4224	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4225	echo " $mc"
4226	printf "\n$striche\n"
4227	if [[ $localhost != $fromhost ]]
4228	then
4229
4230	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4231	then
4232	echo "*** ssh will be used to initiate restart-runs!"
4233	echo " return_addres=\"$return_addres\" "
4234	echo " return_username=\"$return_username\" "
4235	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4236	then
4237	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4238	else
4239	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4240	fi
4241	else
4242	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4243	locat=restart; exit
4244	fi
4245
4246	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4247	# DER AKTUELLE JOB ENDET
4248	if [[ $queue = special1q ]]
4249	then
4250	sleep 120
4251	else
4252	sleep 30
4253	fi
4254
4255	else
4256
4257	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4258	# RUFEN WERDEN, AUSSER AUF lcfimm
4259	cd $LOCAL_PWD
4260	if [[ $localhost = lcfimm ]]
4261	then
4262	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4263	else
4264	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4265	fi
4266	cd - > /dev/null
4267	fi
4268	printf "\n$striche\n *** restart-run initiated \n"
4269
4270
4271	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4272	# GEHOLT WORDEN SIND, LOESCHEN
4273	(( i = 0 ))
4274	while (( i < iin ))
4275	do
4276	(( i = i + 1 ))
4277	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4278	then
4279	rm -r $tmp_data_catalog/${frelin[$i]}
4280	fi
4281	done
4282
4283	else
4284
4285	printf "\n +++ no restart-run possible, since errors occured"
4286	printf "\n during the archive process"
4287	fi
4288
4289	fi
4290
4291
4292
4293	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4294	if [[ "$email_notification" != "none" ]]
4295	then
4296
4297	if [[ $localhost != $fromhost ]]
4298	then
4299	if [[ -f CONTINUE_RUN ]]
4300	then
4301	echo "PALM restart run necessary" > email_text
4302	echo "description header of actual run:" >> email_text
4303	cat CONTINUE_RUN >> email_text
4304	echo "mrun-command to restart:" >> email_text
4305	echo "$mc" >> email_text
4306	else
4307	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4308	fi
4309	mail $email_notification < email_text
4310	printf "\n *** email notification sent to \"$email_notification\" "
4311	fi
4312	fi
4313
4314
4315
4316	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4317	cd $HOME
4318	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4319
4320	else
4321
4322
4323	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4324	# CHENDE AKTIONEN DURCHGEFUEHRT
4325
4326	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4327	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4328	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4329	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4330	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4331	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4332	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4333	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4334	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4335	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4336	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4337	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4338	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4339	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4340	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4341	if [[ $use_openmp = true ]]
4342	then
4343	mrun_com=${mrun_com}" -O $threads_per_task"
4344	fi
4345	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4346	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4347	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4348	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4349	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4350	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4351	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4352	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4353	if [[ $do_remote = true ]]
4354	then
4355	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4356	fi
4357
4358
4359	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4360	jobfile=jobfile.$RANDOM
4361
4362
4363	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4364	echo "mkdir $TEMPDIR" >> $jobfile
4365	echo "cd $TEMPDIR" >> $jobfile
4366
4367
4368	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4369	if [[ $do_trace = true ]]
4370	then
4371	echo "set -x" >> $jobfile
4372	else
4373	echo "set +vx" >> $jobfile
4374	fi
4375
4376
4377	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4378	# DATEI FUER DEN JOB
4379	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4380	then
4381
4382	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4383	# KOPIEREN
4384	if [[ $restart_run != true ]]
4385	then
4386	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4387	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4388	fi
4389
4390	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4391	echo "set -x" >> $jobfile
4392	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4393	echo "export SOURCES_COMPLETE=true" >> $jobfile
4394
4395	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4396	# ARBEITSVERZEICHNIS VERSCHIEBEN
4397	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4398	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4399	echo "execute_mrun=true" >> $jobfile
4400	echo " " >> $jobfile
4401
4402	else
4403
4404	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4405	# SOWIE GEGEBENENFALLS DES MAKEFILES
4406	if [[ $do_compile = true ]]
4407	then
4408
4409	source_catalog=SOURCES_FOR_RUN_$fname
4410
4411	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4412	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4413	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4414	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4415	echo "export SOURCES_COMPLETE=true" >> $jobfile
4416	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4417
4418	for filename in $source_list
4419	do
4420	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4421	echo "cat > $filename << \"%END%\"" >> $jobfile
4422	cat $source_catalog/$filename >> $jobfile
4423	echo " " >> $jobfile
4424	echo "%END%" >> $jobfile
4425	echo " " >> $jobfile
4426	done
4427
4428	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4429	echo "cat > Makefile << \"%END%\"" >> $jobfile
4430	cat $source_catalog/Makefile >> $jobfile
4431	echo " " >> $jobfile
4432	echo "%END%" >> $jobfile
4433	echo " " >> $jobfile
4434
4435	echo "cd - > /dev/null" >> $jobfile
4436
4437	fi
4438
4439
4440	# ABSPEICHERN DER KONFIGURATIONSDATEI
4441	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4442	echo "cat > $config_file << \"%END%\"" >> $jobfile
4443	cat $config_file >> $jobfile
4444	echo "%END%" >> $jobfile
4445	echo " " >> $jobfile
4446
4447
4448	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4449	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4450	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4451	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4452	echo "%END%" >> $jobfile
4453	echo "chmod u+x $mrun_script_name" >> $jobfile
4454	echo "execute_mrun=true" >> $jobfile
4455	echo " " >> $jobfile
4456
4457	fi
4458
4459
4460	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4461	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4462	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4463	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4464	if [[ $do_remote = true ]]
4465	then
4466	(( i = 0 ))
4467	while (( i < iin ))
4468	do
4469	(( i = i + 1 ))
4470	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4471	if [[ "${transin[$i]}" = job ]]
4472	then
4473	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4474	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4475	echo " " >> $jobfile
4476	echo "%END%" >> $jobfile
4477	else
4478	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4479	fi
4480
4481	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4482	echo "if [[ \$? = 1 ]]" >> $jobfile
4483	echo "then" >> $jobfile
4484	echo " echo \" \" " >> $jobfile
4485	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4486	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4487	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4488	echo " execute_mrun=false" >> $jobfile
4489	echo "fi" >> $jobfile
4490	done
4491	fi
4492
4493	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4494	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4495	echo "LOCAL_PWD=$working_directory" >> $jobfile
4496	echo "export LOCAL_PWD" >> $jobfile
4497
4498	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4499	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4500	echo "export LOCAL_MRUN_PATH" >> $jobfile
4501
4502	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4503	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4504	then
4505	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4506	fi
4507
4508	# MRUN AUF ZIELRECHNER AUFRUFEN
4509	echo "set -x" >> $jobfile
4510	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4511
4512	echo 'ls -al; echo `pwd`' >> $jobfile
4513	echo "cd \$HOME" >> $jobfile
4514	echo "rm -rf $TEMPDIR" >> $jobfile
4515
4516
4517
4518
4519	# JOB PER SUBJOB STARTEN
4520	if [[ $silent = false ]]
4521	then
4522	printf "\n "
4523	else
4524	printf "\n\n"
4525	fi
4526
4527	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4528	rm -rf $jobfile
4529
4530
4531	fi # ENDE REMOTE-TEIL
4532
4533
4534
4535	# ENDE DER PROZEDUR

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source: palm/trunk/SCRIPTS/mrun @ 678

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