Home

Context Navigation

source: palm/trunk/SCRIPTS/mrun @ 669

Last change on this file since 669 was 669, checked in by gryschka, 13 years ago
last commit documented
Property svn:keywords set to `Id Rev`
File size: 171.0 KB

Line
1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 669 2010-12-26 19:06:42Z gryschka $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and atmosphere
218	# is now allowed
219
220
221
222	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
223
224	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
225	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
226	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
227
228	AddFilenames=""
229	additional_conditions=""
230	add_source_path=""
231	afname=""
232	archive_save=true
233	archive_system=none
234	compiler_name=""
235	cond1=""
236	cond2=""
237	config_file=.mrun.config
238	coupled_dist=""
239	coupled_mode="mpi1"
240	cpp_opts=""
241	cpp_options=""
242	cpumax=0
243	cpurest=0
244	delete_temporary_catalog=true
245	do_batch=false
246	do_compile=true
247	do_remote=false
248	do_stagein=true
249	do_stageout=true
250	do_trace=false
251	email_notification="none"
252	exclude=""
253	executable=""
254	execution_error=false
255	fimm=false
256	fname=test
257	fromhost=""
258	global_revision=""
259	group_number=none
260	host=""
261	host_file=""
262	hp=""
263	ignore_archive_error=false
264	input_list=""
265	interpreted_config_file=""
266	job_catalog="~/job_queue"
267	job_on_file=""
268	keep_data_from_previous_run=false
269	link_local_input=false
270	link_local_output=false
271	localhost_realname=$(hostname)
272	local_compile=false
273	local_dvrserver_running=.FALSE.
274	locat=normal
275	mainprog=""
276	makefile=""
277	mc=$0
278	while [[ $(echo $mc \| grep -c "/") != 0 ]]
279	do
280	mc=`echo $mc \| cut -f2- -d"/"`
281	done
282	module_calls=""
283	mrun_script_name=$mc
284	netcdf_inc=""
285	netcdf_lib=""
286	netcdf_support=false
287	node_usage=default
288	numprocs=""
289	numprocs_atmos=0
290	numprocs_ocean=0
291	OOPT=""
292	openmp=false
293	output_list=""
294	package_list=""
295	punkte="..........................................................."
296	queue=none
297	read_from_config=""
298	restart_run=false
299	if [[ `hostname` = rte10 ]]
300	then
301	return_addres=133.5.185.60
302	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
303	else
304	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
305	fi
306	return_password=""
307	return_username=$LOGNAME
308	remotecall=false
309	remote_username=""
310	run_coupled_model=false
311	run_mode=""
312	scirocco=false
313	store_on_archive_system=false
314	striche=" ----------------------------------------------------------------------------"
315	silent=false
316	source_list=""
317	source_path=SOURCE
318	tasks_per_node=""
319	threads_per_task=1
320	tmpcreate=false
321	tmp_data_catalog=""
322	transfer_problems=false
323	usern=$LOGNAME
324	use_openmp=false
325	working_directory=`pwd`
326	TOPT=""
327	XOPT=""
328	zeit=$( date \| cut -c 12-19 )
329
330	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
331	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
332
333	typeset -R30 calltime
334	typeset -L20 spalte1
335	typeset -L40 spalte2
336	typeset -L60 spalte3
337	typeset -L35 string1=`date`
338	typeset -L12 string2=$usern
339	typeset -L12 string3=$localhost_realname
340	typeset -L12 string4
341	typeset -L12 string5
342	typeset -L30 version="MRUN 2.0 Rev$Rev: 669 $"
343
344
345
346	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
347	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
348
349	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
350	# EXPORTIERT WERDEN
351	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
352	export group_number input_list memory numprocs output_list queue run_mode
353
354
355
356	# FEHLERBEHANDLUNG
357	# BEI EXIT:
358	trap 'rm -rf $working_directory/tmp_mrun
359	if [[ $locat != localhost ]]
360	then
361	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
362	# then
363	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
364	#MRUN-calls on $localhost
365	#
366	#date and time user localhost remotehost termination mrun-command
367	#--------------------------------------------------------------------------------------------------------------------
368	#%STATEND%
369	# chmod 666 ${mrun_path}/statistik/mrun_statistik
370	# fi
371	#
372	# # EINTRAG IN DIE STATISTIK-DATEI
373	# string4=$host
374	# string5=$locat
375	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
376	# then
377	# if [[ $do_batch = true ]]
378	# then
379	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
380	# else
381	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
382	# fi
383	# fi
384	echo " " > /dev/null
385	fi
386
387	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
388	then
389
390	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
391	(( i = 0 ))
392	while (( i < iec ))
393	do
394	(( i = i + 1 ))
395	printf "\n *** Execution of ERROR-command:\n"
396	printf " >>> ${err_command[$i]}\n"
397	eval ${err_command[$i]}
398	done
399	if [[ -n $interpreted_config_file ]] then
400	rm -rf $interpreted_config_file
401	fi
402	if [[ -n .mrun_environment ]] then
403	rm -rf .mrun_environment
404	fi
405	if [[ $tmpcreate = true ]]
406	then
407	printf "\n *** Contents of \"$TEMPDIR\":\n"
408	ls -al; cd
409	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
410	fi
411	if [[ "$dvrserver_id" != "" ]]
412	then
413	echo "+++ killing dvrserver_id=$dvrserver_id"
414	kill $dvrserver_id
415	fi
416	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
417	then
418	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
419	fi
420	printf "\n\n+++ MRUN killed \n\n"
421	elif [[ $locat != control_c ]]
422	then
423	printf "\n\n --> all actions finished\n\n"
424	printf " Bye, bye $usern !!\n\n"
425	fi' exit
426
427
428	# BEI TERMINAL-BREAK:
429	trap 'rm -rf $working_directory/tmp_mrun
430	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
431	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
432	then
433	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
434	fi
435	if [[ "$dvrserver_id" != "" ]]
436	then
437	echo "+++ killing dvrserver_id=$dvrserver_id"
438	kill $dvrserver_id
439	fi
440	printf "\n+++ MRUN killed by \"^C\" \n\n"
441	locat=control_c
442	exit
443	' 2
444
445
446	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
447	# BEEN SET
448	if [[ "$PALM_BIN" = "" ]]
449	then
450	printf "\n +++ environment variable PALM_BIN has not been set"
451	printf "\n please set it to the directory where the PALM scripts are located"
452	locat=palm_bin; exit
453	fi
454	export PATH=$PALM_BIN:$PATH
455
456
457
458	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
459	# FUER FOLGEJOBS BENOETIGT WIRD
460	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vxX:yY: option
461	do
462	case $option in
463	(a) afname=$OPTARG;;
464	(A) store_on_archive_system=true; mc="$mc -A";;
465	(b) do_batch=true; mc="$mc -b";;
466	(B) delete_temporary_catalog=false; mc="$mc -B";;
467	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
468	(C) restart_run=true; mc="$mc -C";;
469	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
470	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
471	(F) job_on_file="-D"; mc="$mc -F";;
472	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
473	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
474	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
475	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
476	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
477	(I) ignore_archive_error=true; mc="$mc -I";;
478	(k) keep_data_from_previous_run=true; mc="$mc -k";;
479	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
480	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
481	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
482	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
483	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
484	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
485	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
486	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
487	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
488	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
489	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
490	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
491	(S) read_from_config=false; mc="$mc -S";;
492	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
493	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
494	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
495	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
496	(v) silent=true; mc="$mc -v";;
497	(x) do_trace=true;set -x; mc="$mc -x";;
498	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
499	(y) ocean_file_appendix=true; mc="$mc -y";;
500	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
501	(\?) printf "\n +++ unknown option $OPTARG \n"
502	printf "\n --> type \"$0 ?\" for available options \n"
503	locat=parameter;exit;;
504	esac
505	done
506
507
508	# EVTL. POSITIONSPARAMETER EINLESEN
509	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
510	shift OPTIND-1
511
512
513	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
514	if [[ "$1" = "?" ]]
515	then
516	(printf "\n *** mrun can be called as follows:\n"
517	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
518	printf "\n Description of available options:\n"
519	printf "\n Option Description Default-Value"
520	printf "\n -a base name of input files equiv. -d"
521	printf "\n -A archiving when using file-attribute fl"
522	printf "\n -b batch-job on local machine ---"
523	printf "\n -B do not delete temporary directory at end ---"
524	printf "\n -c configuration file .mrun.config"
525	printf "\n -d base name of files attached to program test"
526	printf "\n -D preprocessor(cpp)-directives \"\" "
527	printf "\n -F create remote job file only ---"
528	printf "\n -h execution host $localhost_realname"
529	printf "\n -i INPUT control list \"\" "
530	printf "\n -I archiving errors of previous batch-jobs"
531	printf "\n will be ignored"
532	printf "\n -k keep data from previous run"
533	printf "\n -K additional conditions for controling"
534	printf "\n usage of conditional code and"
535	printf "\n env-variables in configuration file \"\" "
536	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
537	printf "\n -M Makefile name Makefile"
538	printf "\n -n node usage (shared/not_shared) depending on -h"
539	printf "\n -o OUTPUT control list \"\" "
540	printf "\n -O use OpenMP ---"
541	printf "\n -p software package list \"\" "
542	printf "\n -q queue \"$queue\" "
543	printf "\n -r run control list (combines -i -o) \"\" "
544	printf "\n -s filenames of routines to be compiled \"\" "
545	printf "\n must end with .f, .f90, .F, or .c !"
546	printf "\n use \"..\" for more than one file and wildcards"
547	printf "\n -s TEST compiles all files with w-permit"
548	printf "\n -S config file interpreted by shellscript ---"
549	printf "\n -t allowed cpu-time in seconds (batch) 0"
550	printf "\n -T tasks per node depending on -h"
551	printf "\n -u username on remote machine \"\" "
552	printf "\n -v no prompt for confirmation ---"
553	printf "\n -x tracing of mrun for debug purposes ---"
554	printf "\n -X # of processors (on parallel machines) 1"
555	printf "\n -y add appendix \"_O\" to all local output"
556	printf "\n files (ocean precursor runs followed by"
557	printf "\n coupled atmosphere-ocean runs) ---"
558	printf "\n -Y run coupled model, \"#1 #2\" with"
559	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
560	printf "\n "
561	printf "\n Possible values of positional parameter <modus>:"
562	printf "\n \"?\" - this outline \n\n") \| more
563	exit
564	elif [[ "$1" != "" ]]
565	then
566	printf "\n +++ positional parameter $1 unknown \n"
567	locat=parameter; exit
568	fi
569
570
571
572	# KURZE STARTMELDUNG
573	printf "\n*** $version "
574	printf "\n will be executed. Please wait ..."
575
576
577
578	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
579	if [[ ! -f $config_file ]]
580	then
581	printf "\n\n +++ configuration file: "
582	printf "\n $config_file"
583	printf "\n does not exist"
584	locat=connect; exit
585	fi
586
587
588	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
589	line=""
590	grep "%host_identifier" $config_file > tmp_mrun
591	while read line
592	do
593	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
594	then
595	HOSTNAME=`echo $line \| cut -d" " -s -f2`
596	host_identifier=`echo $line \| cut -d" " -s -f3`
597	if [[ $localhost_realname = $HOSTNAME ]]
598	then
599	localhost=$host_identifier
600	break
601	fi
602	fi
603	done < tmp_mrun
604
605	if [[ "$localhost" = "" ]]
606	then
607	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
608	printf "\n for local host \"$localhost_realname\"."
609	printf "\n Please add line"
610	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
611	printf "\n to the configuration file."
612	locat=localhost; exit
613	fi
614
615
616	# HOSTSPEZIFISCHE VARIABLEN SETZEN
617	case $localhost_realname in
618	(r1\|r2\|h01\|b01) archive_system=tivoli;;
619	(cs*) archive_system=ut;;
620	(fimm.bccs.uib.no) fimm=true;;
621	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
622	(scirocco) scirocco=true;;
623	esac
624
625
626
627	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
628	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
629	[[ "$afname" = "" ]] && afname=$fname
630
631
632	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
633	if [[ "$run_mode" != "" ]]
634	then
635	input_list="$input_list $run_mode"
636	output_list="$output_list $run_mode"
637	fi
638
639
640	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
641	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
642	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
643	# STARTET)
644	if [[ "$fromhost" = "" ]]
645	then
646	fromhost=$localhost
647	fi
648
649
650	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
651	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
652	then
653	source_list=TEST
654	local_compile=true
655	host=$localhost
656	fi
657
658
659	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
660	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
661	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
662	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
663	if [[ -n $host && "$host" != $localhost ]]
664	then
665	do_batch=true
666	do_remote=true
667	case $host in
668	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck) true;;
669	(*) printf "\n"
670	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
671	printf "\n is not available"
672	locat=nqs; (( iec = 0 )); exit;;
673	esac
674	else
675	host=$localhost
676	fi
677
678
679	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
680	if [[ -n $additional_conditions ]]
681	then
682	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
683	cond1=`echo $additional_conditions \| cut -d" " -f1`
684	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
685	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
686	if [[ -n $dummy ]]
687	then
688	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
689	locat=options; exit
690	fi
691	block=_$cond1
692	[[ -n $cond2 ]] && block=${block}_$cond2
693	fi
694
695
696	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
697	if [[ $run_coupled_model = true ]]
698	then
699
700	if [[ -n $coupled_dist ]]
701	then
702
703	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
704	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
705
706	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
707	then
708
709	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
710	printf "\n PEs (total) : $numprocs"
711	printf "\n PEs (atmosphere): $numprocs_atmos"
712	printf "\n PEs (ocean) : $numprocs_ocean"
713	locat=coupling; exit
714
715	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
716	# THIS SHOULD BE REMOVED IN FUTURE
717	fi
718
719	else
720
721	(( numprocs_ocean = $numprocs / 2 ))
722	(( numprocs_atmos = $numprocs / 2 ))
723
724	fi
725	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
726
727	# GET coupled_mode FROM THE CONFIG FILE
728	line=""
729	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
730	while read line
731	do
732	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
733	then
734	coupled_mode="mpi2"
735	fi
736	done < tmp_mrun
737
738	fi
739
740
741	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
742	# ARCHIVIERUNG FEHLGESCHLAGEN IST
743	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
744	then
745	if [[ $ignore_archive_error = false ]]
746	then
747	printf "\n +++ data archiving of previous run failed"
748	printf "\n see directory \~/job_queue on remote machine"
749	locat=archive; exit
750	else
751	printf "\n +++ warning: data archiving in a previous run failed"
752	printf "\n MRUN continues, trying to get backup copy"
753	fi
754	fi
755
756
757
758	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
759	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
760	if [[ "$read_from_config" = false ]]
761	then
762
763	[[ $silent = false ]] && printf "\n Reading the configuration file... "
764	while read zeile
765	do
766	[[ $silent = false ]] && printf "."
767
768
769	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
770	# ERSETZEN
771	eval zeile=\"$zeile\"
772
773
774	# INTERPRETATION DER ZEILE
775	if [[ "$(echo $zeile)" = "" ]]
776	then
777	# LEERZEILE, KEINE AKTION
778	continue
779
780	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
781	then
782
783	# ZEILE IST KOMMENTARZEILE
784	true
785
786	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
787	then
788
789	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
790	zeile=$(echo $zeile \| cut -c2-)
791	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
792	var=`echo $zeile \| cut -d" " -f1`
793	value=`echo $zeile \| cut -d" " -s -f2`
794	for_host=`echo $zeile \| cut -d" " -s -f3`
795	for_cond1=`echo $zeile \| cut -d" " -s -f4`
796	for_cond2=`echo $zeile \| cut -d" " -s -f5`
797
798	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
799	then
800
801	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
802	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
803	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
804
805
806	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
807	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
808	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
809	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
810	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
811	# KONFIGURATIONSDATEI
812	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
813	then
814	eval $var=\$value
815
816	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
817	if [[ $do_trace = true ]]
818	then
819	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
820	fi
821	fi
822
823	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
824	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
825	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
826	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
827	if [[ $var = host ]]
828	then
829	if [[ -n $host && "$host" != $localhost ]]
830	then
831	do_batch=true
832	do_remote=true
833	case $host in
834	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
835	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
836	printf "\n is not available"
837	locat=nqs; exit;;
838	esac
839	else
840	host=$localhost
841	fi
842	fi
843
844	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
845	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
846	# DEN PROGRAMMEN BENOETIGT WERDEN
847	export $var
848	fi
849
850
851
852
853	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
854	then
855
856	# ZEILE DEFINIERT ERROR-KOMMANDO
857	(( iec = iec + 1 ))
858	zeile=$(echo $zeile \| cut -c4-)
859	err_command[$iec]="$zeile"
860
861	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
862	then
863
864	# ZEILE DEFINIERT INPUT-KOMMANDO
865	(( iic = iic + 1 ))
866	zeile=$(echo $zeile \| cut -c4-)
867	in_command[$iic]="$zeile"
868
869	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
870	then
871
872	# ZEILE DEFINIERT OUTPUT-KOMMANDO
873	(( ioc = ioc + 1 ))
874	zeile=$(echo $zeile \| cut -c4-)
875	out_command[$ioc]="$zeile"
876
877	else
878
879	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
880	# s2a: in/out - Feld
881	# s2b: loc - Feld (optional)
882	# s2c: tr/ar - Feld (optional)
883	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
884	s1=`echo $zeile \| cut -d" " -f1`
885	s2=`echo $zeile \| cut -d" " -s -f2`
886	s2a=$(echo $s2 \| cut -d":" -f1)
887	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
888	then
889	s2b=""
890	s2c=""
891	else
892	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
893	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
894	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
895	fi
896	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
897	s3=`echo $zeile \| cut -d" " -f3`
898	s4=`echo $zeile \| cut -d" " -s -f4`
899	s5=`echo $zeile \| cut -d" " -s -f5`
900	s6=`echo $zeile \| cut -d" " -s -f6`
901
902
903	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
904	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
905	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
906	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
907	# HANDEN SEIN MUSS (D.H. s2b = loc)
908	IFSALT="$IFS"; IFS="$IFS:"
909	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
910	then
911	found=false
912	for actual in $input_list
913	do
914	for formal in $s3
915	do
916	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
917	done
918	done
919	if [[ $found = true ]]
920	then
921	(( iin = iin + 1 ))
922	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
923	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
924	extin[$iin]=$s6
925	fi
926	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
927	then
928	found=false
929	for actual in $output_list
930	do
931	for formal in $s3
932	do
933	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
934	done
935	done
936	if [[ $found = true ]]
937	then
938	(( iout = iout + 1 ))
939	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
940	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
941	fi
942	elif [[ "$s2a" != in && "$s2a" != out ]]
943	then
944	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
945	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
946	locat=connect; exit
947	fi
948	IFS="$IFSALT"
949	fi
950	done < $config_file
951
952	else
953
954
955	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
956	[[ $silent = false ]] && printf "..."
957	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
958	export interpreted_config_file=.icf.$RANDOM
959
960
961
962	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
963	# VERFUEGUNG STELLEN
964	cat > .mrun_environment << %%END%%
965	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
966	config_file = '$config_file', do_remote = '$do_remote',
967	do_trace = '$do_trace', host = '$host',
968	input_list = '$input_list', icf = '$interpreted_config_file',
969	localhost = '$localhost', output_list = '$output_list' /
970
971	%%END%%
972
973	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
974	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
975	mrun_memory=$memory
976	mrun_group_number=$group_number
977	mrun_cpumax=$cpumax
978	mrun_numprocs=$numprocs
979
980	if [[ $localhost_realname = "sx-fep" ]]
981	then
982	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
983	else
984
985	if [[ "$host" != $localhost ]]
986	then
987
988	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
989	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
990	if [[ $? != 0 ]]
991	then
992	printf "\n\n +++ no interpret_config found"
993	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
994	locat=interpret_config; exit
995	fi
996	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
997	$interpret_config_executable
998
999	else
1000
1001	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1002	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1003	then
1004	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1005	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1006	locat=interpret_config; exit
1007	else
1008	interpret_config${block}.x
1009	fi
1010
1011	fi
1012	fi
1013	rm .mrun_environment
1014
1015
1016	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1017	chmod u+x $interpreted_config_file
1018	export PATH=$PATH:.
1019	. $interpreted_config_file
1020	rm $interpreted_config_file
1021
1022
1023	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1024	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1025	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1026	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1027	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1028
1029	fi
1030
1031
1032	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1033	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1034	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1035	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1036	if [[ "$SOURCES_COMPLETE" = "" ]]
1037	then
1038
1039	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1040	# VEREINBART WURDE
1041	source_path=""
1042	line=""
1043	grep "%source_path" $config_file > tmp_mrun
1044	while read line
1045	do
1046	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1047	then
1048	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1049	then
1050	global_source_path=`echo $line \| cut -d" " -f2`
1051	fi
1052	fi
1053	done < tmp_mrun
1054
1055	line=""
1056	found=false
1057	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1058	while read line
1059	do
1060	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1061	then
1062	if [[ $found = true ]]
1063	then
1064	printf "\n\n +++ more than one source path found in configuration file"
1065	printf "\n for local host \"$localhost\" "
1066	locat=source_path; exit
1067	fi
1068	source_path=`echo $line \| cut -d" " -f2`
1069	found=true
1070	fi
1071	done < tmp_mrun
1072	rm tmp_mrun
1073
1074	if [[ "$source_path" = "" ]]
1075	then
1076	if [[ "$global_source_path" != "" ]]
1077	then
1078	source_path=$global_source_path
1079	else
1080	printf "\n\n +++ no source path found in configuration file"
1081	printf "\n for local host \"$localhost\" "
1082	locat=source_path; exit
1083	fi
1084	fi
1085	eval source_path=$source_path
1086
1087	if [[ ! -d $source_path ]]
1088	then
1089	printf "\n\n +++ source path \"$source_path\" on local host"
1090	printf "\n \"$localhost\" does not exist"
1091	locat=source_path; exit
1092	fi
1093
1094	fi
1095
1096
1097	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1098	# DURCH OPTION -G MITGETEILT)
1099	if [[ "$global_revision" = "" ]]
1100	then
1101	global_revision=`svnversion $source_path 2>/dev/null`
1102	global_revision="Rev: $global_revision"
1103	fi
1104
1105
1106	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1107	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1108	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1109	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1110	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1111	if [[ -n $host && "$host" != $localhost ]]
1112	then
1113	do_batch=true
1114	do_remote=true
1115	case $host in
1116	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
1117	(*) printf "\n"
1118	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1119	printf "\n is not available"
1120	locat=nqs; (( iec = 0 )); exit;;
1121	esac
1122	else
1123	host=$localhost
1124	fi
1125
1126
1127	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1128	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1129	then
1130
1131	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1132	if [[ ! -n $numprocs ]]
1133	then
1134	printf "\n"
1135	printf "\n +++ option \"-K parallel\" requires additional specification"
1136	printf "\n of the number of processors to be used by"
1137	printf "\n mrun-option \"-X\" or by environment-variable"
1138	printf "\n \"numprocs\" in the configuration file"
1139	locat=numprocs; (( iec = 0 )); exit
1140	fi
1141
1142	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1143	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1144	# GESAMTPROZESSORANZAHL IST
1145	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibms ]]
1146	then
1147	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1148	(( ival = $tasks_per_node ))
1149	(( pes = numprocs ))
1150	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1151	# then
1152	# (( pes = pes - 1 ))
1153	# fi
1154	(( ii = pes / ival ))
1155	if (( pes - ii * ival > 0 ))
1156	then
1157	printf "\n"
1158	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1159	printf "\n divisor of the total number of processors (option \"-X\")"
1160	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1161	locat=tasks_per_node; (( iec = 0 )); exit
1162	fi
1163	fi
1164
1165	# IBMY HAT NUR EINEN KNOTEN
1166	if [[ $host = ibmy ]]
1167	then
1168	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1169	then
1170	printf "\n"
1171	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1172	printf "\n total number of processors (option \"-X\")"
1173	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1174	locat=tasks_per_node; (( iec = 0 )); exit
1175	fi
1176	fi
1177
1178	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1179	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1180	# if [[ $use_openmp = true ]]
1181	# then
1182	# threads_per_task=$tasks_per_node
1183	# tasks_per_node=1
1184	# fi
1185
1186	# SETTINGS FOR SUBJOB-COMMAND
1187	TOPT="-T $tasks_per_node"
1188	OOPT="-O $threads_per_task"
1189
1190	# GESAMTZAHL DER KNOTEN BESTIMMEN
1191	if [[ "$tasks_per_node" != "" ]]
1192	then
1193	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1194	fi
1195
1196	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1197	# SETZEN
1198	if [[ $node_usage = default ]]
1199	then
1200	if [[ $host = ibms ]]
1201	then
1202	node_usage=shared
1203	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1204	then
1205	node_usage=singlejob
1206	else
1207	node_usage=not_shared
1208	fi
1209	fi
1210
1211	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1212	then
1213	printf "\n"
1214	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1215	printf "\n \"shared\" or \"not_shared\""
1216	locat=tasks_per_node; (( iec = 0 )); exit
1217	fi
1218
1219	fi
1220
1221	# PRUEFEN, OB HOSTFILE EXISTIERT
1222	if [[ -n $hostfile ]]
1223	then
1224	if [[ ! -f $hostfile ]]
1225	then
1226	printf "\n"
1227	printf "\n +++ hostfile \"$hostfile\" does not exist"
1228	locat=hostfile; exit
1229	fi
1230	fi
1231
1232	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1233	if [[ $host = ibmy && $do_remote = false ]]
1234	then
1235	if [[ ! -f $HOME/.rhosts ]]
1236	then
1237	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1238	printf "\n\n *** file:"
1239	printf "\n $HOME/.rhosts"
1240	printf "\n was created\n"
1241	fi
1242	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1243	then
1244	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1245	printf "\n\n *** file:"
1246	printf "\n $HOME/.rhosts"
1247	printf "\n was extended by the name of the current host\n"
1248	fi
1249	fi
1250
1251
1252
1253	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1254	if [[ $queue = none ]]
1255	then
1256	case $host in
1257	(ibmh) queue=no_class;;
1258	(ibmy) queue=parallel;;
1259	(lckyoto) queue=ph;;
1260	(lcsgib) queue=bigq;;
1261	(lcsgih) queue=bigq;;
1262	(lctit) queue=S;;
1263	(nech) queue=none;;
1264	(necriam) queue=SP;;
1265	(unics) queue=unics;;
1266	esac
1267	fi
1268
1269
1270	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1271	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1272	# ERMITTELN
1273	(( i = 0 ))
1274	while (( i < iin ))
1275	do
1276	(( i = i + 1 ))
1277	(( maxcycle = 0 ))
1278
1279	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1280	if [[ "${actionin[$i]}" = di ]]
1281	then
1282	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1283	# REM-MASCHINE AUSWERTEN
1284	eval filename=${pathin[$i]}/${endin[$i]}
1285	else
1286	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1287	# REM-MASCHINE AUSWERTEN
1288	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1289	fi
1290
1291	# PRUEFEN AUF VORHANDENSEIN
1292	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1293	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1294	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1295	then
1296	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1297	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1298	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1299	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1300	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1301	if [[ "${transin[$i]}" != "locopt" ]]
1302	then
1303	printf "\n\n +++ INPUT-file: "
1304	if [[ "${extin[$i]}" = "" ]]
1305	then
1306	printf "\n $filename"
1307	else
1308	printf "\n $filename.${extin[$i]}"
1309	fi
1310	printf "\n does not exist\n"
1311	locat=input; exit
1312	else
1313	transin[$i]="unavailable"
1314	fi
1315	else
1316
1317	# ZYKLUSNUMMER FESTSTELLEN
1318	ls -1 -d $filename > filelist 2>/dev/null
1319	ls -1 -d $filename.* >> filelist 2>/dev/null
1320	while read zeile
1321	do
1322	cycle=$(print $zeile \| cut -f2 -d".")
1323	if [[ "$cycle" = "$zeile" ]]
1324	then
1325	(( icycle = 0 ))
1326	elif [[ "$cycle" = "${extin[$i]}" ]]
1327	then
1328	(( icycle = 0 ))
1329	else
1330	(( icycle = $cycle ))
1331	fi
1332	if (( icycle > maxcycle ))
1333	then
1334	(( maxcycle = icycle ))
1335	file_to_be_used=$zeile
1336	fi
1337	done <filelist
1338	rm filelist
1339
1340	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1341	if (( maxcycle > 0 ))
1342	then
1343	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1344	then
1345	filename=${filename}.$maxcycle.${extin[$i]}
1346	else
1347	filename=${filename}.$maxcycle
1348	fi
1349	else
1350	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1351	then
1352	filename=${filename}.${extin[$i]}
1353	fi
1354	fi
1355
1356	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1357	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1358	absnamein[$i]=$filename
1359	if (( maxcycle > 0 ))
1360	then
1361	if [[ "${actionin[$i]}" = di ]]
1362	then
1363	frelin[$i]=${endin[$i]}.$maxcycle
1364	else
1365	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1366	fi
1367	else
1368	if [[ "${actionin[$i]}" = di ]]
1369	then
1370	frelin[$i]=${endin[$i]}
1371	else
1372	frelin[$i]=${afname}${endin[$i]}
1373	fi
1374	fi
1375
1376	fi
1377	done
1378
1379
1380	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1381	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1382	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1383	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1384	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1385	(( i = 0 ))
1386	while (( i < iout ))
1387	do
1388	(( i = i + 1 ))
1389	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1390	then
1391	if [[ "${actionout[$i]}" = tr ]]
1392	then
1393	actionout[$i]=""
1394	elif [[ "${actionout[$i]}" = trpe ]]
1395	then
1396	actionout[$i]=pe
1397	elif [[ "${actionout[$i]}" = tra ]]
1398	then
1399	actionout[$i]=a
1400	fi
1401	(( maxcycle = 0 ))
1402	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1403	eval catalogname=${pathout[$i]}
1404	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1405	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1406	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1407	then
1408
1409	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1410	if cat /dev/null > $filename
1411	then
1412	rm $filename
1413	else
1414
1415	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1416	if [[ ! -d $catalogname ]]
1417	then
1418	if mkdir -p $catalogname
1419	then
1420	printf "\n\n *** directory:"
1421	printf "\n $catalogname"
1422	printf "\n was created\n"
1423	else
1424	printf "\n\n +++ OUTPUT-file:"
1425	printf "\n $filename"
1426	printf "\n cannot be created, because directory does not exist"
1427	printf "\n and cannot be created either"
1428	printf "\n"
1429	locat=output ; exit
1430	fi 2>/dev/null
1431	else
1432	printf "\n\n +++ OUTPUT-file:"
1433	printf "\n $filename"
1434	printf "\n cannot be created, although directory exists"
1435	printf "\n"
1436	locat=output ; exit
1437	fi
1438	fi 2>/dev/null
1439	else
1440
1441	# ZYKLUSNUMMER FESTSTELLEN
1442	ls -1 -d $filename > filelist 2>/dev/null
1443	ls -1 -d $filename.* >> filelist 2>/dev/null
1444	while read zeile
1445	do
1446	cycle=$(print $zeile \| cut -f2 -d".")
1447	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1448	then
1449	(( icycle = 1 ))
1450	else
1451	(( icycle = $cycle + 1 ))
1452	fi
1453	if (( icycle > maxcycle ))
1454	then
1455	(( maxcycle = icycle ))
1456	fi
1457	done <filelist
1458	rm filelist
1459	fi
1460
1461	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1462	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1463	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1464	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1465	if [[ "${actionout[$i]}" != a ]]
1466	then
1467	if (( maxcycle > 0 ))
1468	then
1469	filename=${filename}.$maxcycle
1470	if cat /dev/null > $filename
1471	then
1472	rm $filename
1473	else
1474	printf "\n +++ OUTPUT-file:"
1475	printf "\n $filename"
1476	printf "\n cannot be created"
1477	locat=output ; exit
1478	fi
1479	fi
1480	else
1481	(( maxcycle = maxcycle - 1 ))
1482	if (( maxcycle > 0 ))
1483	then
1484	filename=${filename}.$maxcycle
1485	fi
1486	fi
1487
1488	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1489	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1490	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1491	pathout[$i]=$filename
1492	if (( maxcycle > 0 ))
1493	then
1494	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1495	else
1496	frelout[$i]=${fname}${endout[$i]}
1497	fi
1498
1499	fi
1500	done
1501
1502
1503	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1504	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1505	then
1506	if [[ "$dvr_inc" = "" ]]
1507	then
1508	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1509	printf "\n This is required for the dvrp_graphics package.\n"
1510	locat=dvr; exit
1511	fi
1512	if [[ "$dvr_lib" = "" ]]
1513	then
1514	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1515	printf "\n This is required for the dvrp_graphics package.\n"
1516	locat=dvr; exit
1517	fi
1518	fi
1519
1520
1521	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1522	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1523	# UEBERSETZT ZU WERDEN)
1524	if [[ "$mainprog" = "" && "$executable" = "" ]]
1525	then
1526	printf "\n +++ neither main program nor executable defined"
1527	locat=source; exit
1528	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1529	then
1530	printf "\n +++ main program as well as executable defined"
1531	locat=source; exit
1532	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1533	then
1534	do_compile=false
1535	fi
1536
1537
1538	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1539	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1540	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1541	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1542	then
1543	rm -rf SOURCES_FOR_RUN_$fname
1544	mkdir SOURCES_FOR_RUN_$fname
1545	fi
1546
1547
1548	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1549	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1550	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1551	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1552	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1553	then
1554
1555	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1556	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1557
1558
1559	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1560	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1561	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1562	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1563	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1564	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1565	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1566	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1567	# GESAMMELT
1568	if [[ "$source_list" = WRITE_PERMIT ]]
1569	then
1570
1571	source_list=""
1572	cd $source_path
1573
1574
1575	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1576	Names=$(ls -1 *.f90 2>&1)
1577	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1578	Names=$(ls -1 *.F90 2>&1)
1579	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1580	Names=$(ls -1 *.F 2>&1)
1581	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1582	Names=$(ls -1 *.f 2>&1)
1583	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1584	Names=$(ls -1 *.c 2>&1)
1585	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1586
1587
1588	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1589	for dateiname in $Filenames
1590	do
1591	if [[ -w $dateiname ]]
1592	then
1593	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1594	then
1595	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1596	source_list=$source_list"$dateiname "
1597	fi
1598	fi
1599	done
1600
1601	cd - > /dev/null
1602
1603
1604	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1605	then
1606
1607	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1608	source_list=""
1609	cd $source_path
1610
1611
1612	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1613	if [[ ! -d .svn ]]
1614	then
1615	printf "\n\n +++ source directory"
1616	printf "\n \"$source_path\" "
1617	printf "\n is not under control of \"subversion\"."
1618	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1619	fi
1620
1621
1622	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1623	Filenames=""
1624	svn status > tmp_mrun
1625	while read line
1626	do
1627	firstc=`echo $line \| cut -c1`
1628	if [[ $firstc = M \|\| $firstc = "?" ]]
1629	then
1630	Name=`echo "$line" \| cut -c8-`
1631	extension=`echo $Name \| cut -d. -f2`
1632	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1633	then
1634	Filenames="$Filenames "$Name
1635	fi
1636	fi
1637	done < tmp_mrun
1638
1639
1640	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1641	for dateiname in $Filenames
1642	do
1643	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1644	source_list=$source_list"$dateiname "
1645	done
1646
1647	cd - > /dev/null
1648
1649
1650	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1651	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1652	# VORHANDEN
1653	elif [[ "$source_list" != "" && $restart_run != true ]]
1654	then
1655
1656	cd $source_path
1657
1658	for filename in $source_list
1659	do
1660
1661	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1662	if [[ $(print $filename \| grep -c "/") != 0 ]]
1663	then
1664	printf "\n +++ source code file: $filename"
1665	printf "\n must not contain (\"/\") "
1666	locat=source; exit
1667	fi
1668
1669	if [[ ! -f $filename ]]
1670	then
1671	printf "\n +++ source code file: $filename"
1672	printf "\n does not exist"
1673	locat=source; exit
1674	else
1675	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1676	fi
1677
1678	done
1679
1680	cd - > /dev/null
1681
1682	fi
1683
1684
1685	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1686	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1687	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1688	if [[ $restart_run != true ]]
1689	then
1690
1691	if [[ ! -f "$source_path/$mainprog" ]]
1692	then
1693	printf "\n\n +++ main program: $mainprog"
1694	printf "\n does not exist in source directory"
1695	printf "\n \"$source_path\"\n"
1696	locat=source; exit
1697	else
1698	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1699	then
1700	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1701	source_list=${mainprog}" $source_list"
1702	fi
1703	fi
1704	fi
1705
1706
1707	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1708	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1709	if [[ "$restart_run" != true ]]
1710	then
1711	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1712	if [[ ! -f $makefile ]]
1713	then
1714	printf "\n +++ file \"$makefile\" does not exist"
1715	locat=make; exit
1716	else
1717	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1718	fi
1719	fi
1720
1721
1722	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1723	if [[ $restart_run != true && "$add_source_path" != "" ]]
1724	then
1725
1726	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1727	if [[ ! -d $add_source_path ]]
1728	then
1729	printf "\n\n +++ WARNING: additional source code directory"
1730	printf "\n \"$add_source_path\" "
1731	printf "\n does not exist or is not a directory."
1732	printf "\n No source code will be used from this directory!\n"
1733	add_source_path=""
1734	sleep 3
1735	else
1736
1737	cd $add_source_path
1738	found=false
1739
1740	Names=$(ls -1 *.f90 2>&1)
1741	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1742	Names=$(ls -1 *.F90 2>&1)
1743	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1744	Names=$(ls -1 *.F 2>&1)
1745	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1746	Names=$(ls -1 *.f 2>&1)
1747	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1748	Names=$(ls -1 *.c 2>&1)
1749	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1750
1751	cd - > /dev/null
1752	cd SOURCES_FOR_RUN_$fname
1753
1754	# COPY MAKEFILE IF EXISTING
1755	if [[ -f $add_source_path/Makefile ]]
1756	then
1757	printf "\n\n *** user Makefile from directory"
1758	printf "\n \"$add_source_path\" is used \n"
1759	sleep 1
1760	cp $add_source_path/Makefile .
1761	fi
1762
1763	for dateiname in $AddFilenames
1764	do
1765	if [[ -f $dateiname ]]
1766	then
1767	printf "\n +++ source code file \"$dateiname\" found in additional"
1768	printf "\n source code directory \"$add_source_path\" "
1769	printf "\n but was also given with option \"-s\" which means that it should be taken"
1770	printf "\n from directory \"$source_path\"."
1771	locat=source; exit
1772	fi
1773
1774	cp $add_source_path/$dateiname .
1775	source_list="$source_list $dateiname"
1776
1777	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1778	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1779	then
1780	printf "\n\n +++ user file \"$dateiname\" "
1781	printf "\n is not listed in Makefile \n"
1782	locat=source; exit
1783	else
1784
1785	# Default User-Interface von der Liste entfernen, falls Datei
1786	# ein User-Interface enthaelt
1787	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1788	# then
1789	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1790	# then
1791	# rm -rf user_interface.f90
1792	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1793	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1794	# printf "\n since a user-interface is found in file"
1795	# printf "\n \"$add_source_path/$dateiname\" \n"
1796	# sleep 3
1797	# else
1798	if [[ $found = false ]]
1799	then
1800	found=true
1801	printf "\n\n *** following user file(s) added to the"
1802	printf " files to be translated:\n "
1803	fi
1804	printf "$dateiname "
1805	sleep 0.5
1806	fi
1807	done
1808	[[ $found = true ]] && printf "\n"
1809	cd - > /dev/null
1810	fi
1811	fi
1812
1813
1814	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1815	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1816	if [[ $restart_run != true && -n $package_list ]]
1817	then
1818
1819	cd $source_path
1820
1821	for package in $package_list
1822	do
1823
1824	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1825
1826	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1827	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1828	# LIEFERT
1829	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1830
1831
1832	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1833	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1834	for source_list_name in $package_source_list
1835	do
1836	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1837	then
1838
1839	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1840	ending=`echo $source_list_name \| cut -f2 -d.`
1841	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1842	then
1843	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1844	source_list="$source_list $source_list_name"
1845	fi
1846	fi
1847	done
1848	done
1849
1850	cd - > /dev/null
1851	fi
1852
1853
1854	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1855	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1856	# if [[ "$restart_run" != true ]]
1857	# then
1858	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1859	# if [[ ! -f $makefile ]]
1860	# then
1861	# printf "\n +++ file \"$makefile\" does not exist"
1862	# locat=make; exit
1863	# else
1864	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1865	# fi
1866	# fi
1867
1868	fi # do_compile=true
1869
1870
1871	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1872	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1873	if [[ $do_compile = true ]]
1874	then
1875
1876	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1877	# ZUSAMMENSETZEN
1878	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1879	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1880	then
1881	cpp_options="${cpp_options},-D__ibm=__ibm"
1882	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1883	then
1884	cpp_options="$cpp_options -D__nec"
1885	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1886	then
1887	cpp_options="$cpp_options -D__lc"
1888	else
1889	cpp_options="$cpp_options -D__$localhost"
1890	fi
1891
1892	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1893	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1894	then
1895	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1896	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1897	else
1898	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1899	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1900	fi
1901
1902	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1903	if [[ -n $package_list ]]
1904	then
1905	for package in $package_list
1906	do
1907	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1908	then
1909	if [[ $package != "dvrp_graphics+1PE" ]]
1910	then
1911	cpp_options="${cpp_options},-D__$package=__$package"
1912	else
1913	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1914	export use_seperate_pe_for_dvrp_output=true
1915	fi
1916	else
1917	if [[ $package != "dvrp_graphics+1PE" ]]
1918	then
1919	cpp_options="$cpp_options -D__$package"
1920	else
1921	cpp_options="$cpp_options -D__dvrp_graphics"
1922	export use_seperate_pe_for_dvrp_output=true
1923	fi
1924	fi
1925	done
1926	fi
1927
1928	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1929	if [[ -n $cpp_opts ]]
1930	then
1931	for popts in $cpp_opts
1932	do
1933	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1934	then
1935	cpp_options="${cpp_options},-D__$popts=__$popts"
1936	else
1937	cpp_options="$cpp_options -D__$popts"
1938	fi
1939	done
1940	fi
1941
1942	else
1943
1944
1945	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1946	if [[ $do_remote = false ]]
1947	then
1948	if [[ ! -f $executable ]]
1949	then
1950	printf "\n +++ executable file: $executable"
1951	printf "\n does not exist"
1952	locat=executable; exit
1953	fi
1954	fi
1955	fi
1956
1957
1958	# JOBMODUS FESTSTELLEN
1959	if [[ "$ENVIRONMENT" = BATCH ]]
1960	then
1961	jobmo=BATCH
1962	else
1963	jobmo=INTERACTIVE
1964	fi
1965
1966
1967	# no interactive runs on lctit
1968	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1969	then
1970	printf "\n +++ no interactive runs allowed on host \"$host\" "
1971	printf "\n please submit batch job using mrun option \"-b\" \n"
1972	locat=normal; exit
1973	fi
1974
1975
1976	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1977	# DURCH BENUTZER ANDERWEITIG VEREINBART
1978	if [[ "$compiler_name" = "" ]]
1979	then
1980
1981	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1982	locat=compiler_name; exit
1983
1984	fi
1985
1986
1987	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1988	[[ $localhost = necriam ]] && compiler_name=mpif90
1989
1990
1991
1992	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1993	kennung=$RANDOM
1994	if [[ "$tmp_user_catalog" = "" ]]
1995	then
1996	if [[ $localhost = ibmh ]]
1997	then
1998	tmp_user_catalog=$SCRATCH
1999	elif [[ $localhost = nech ]]
2000	then
2001	tmp_user_catalog=$WRKSHR
2002	else
2003	tmp_user_catalog=/tmp
2004	fi
2005	fi
2006	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2007
2008
2009	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2010	# BESTIMMEN
2011	if [[ "$tmp_data_catalog" = "" ]]
2012	then
2013	if [[ $localhost = nech ]]
2014	then
2015	tmp_data_catalog=$WRKSHR/mrun_restart_data
2016	else
2017	tmp_data_catalog=/tmp/mrun_restart_data
2018	fi
2019	fi
2020
2021
2022	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2023	# ERSETZEN
2024	if [[ $do_remote = false && $do_compile = true ]]
2025	then
2026	eval fopts=\"$fopts\"
2027	eval lopts=\"$lopts\"
2028	fi
2029
2030
2031
2032	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2033	fopts="$fopts $netcdf_inc $dvr_inc"
2034	lopts="$lopts $netcdf_lib $dvr_lib"
2035	ROPTS="$ropts"
2036	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck ) && -n $numprocs ]]
2037	then
2038	XOPT="-X $numprocs"
2039	fi
2040
2041
2042
2043	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2044	# GRAMM BENOETIGT
2045	done=false
2046	while [[ $done = false ]]
2047	do
2048	cputime=$cpumax
2049	if (( $cputime == 0 ))
2050	then
2051	if [[ $do_batch = true ]]
2052	then
2053	printf "\n +++ cpu-time is undefined"
2054	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2055	printf "\n >>> "
2056	read cputime 1>/dev/null 2>&1
2057	else
2058	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2059	fi
2060	else
2061	done=true
2062	fi
2063	cpumax=$cputime
2064	done
2065
2066	(( minuten = cputime / 60 ))
2067	(( sekunden = cputime - minuten * 60 ))
2068
2069
2070	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2071	if [[ $do_batch = true ]]
2072	then
2073	done=false
2074	while [[ $done = false ]]
2075	do
2076	if (( memory == 0 ))
2077	then
2078	printf "\n +++ memory demand is undefined"
2079	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2080	printf "\n >>> "
2081	read memory 1>/dev/null 2>&1
2082	else
2083	done=true
2084	fi
2085	done
2086	fi
2087
2088
2089	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2090	if [[ $do_remote = true && -z $remote_username ]]
2091	then
2092	while [[ -z $remote_username ]]
2093	do
2094	printf "\n +++ username on remote host \"$host\" is undefined"
2095	printf "\n >>> Please type username:"
2096	printf "\n >>> "
2097	read remote_username
2098	done
2099	mc="$mc -u$remote_username"
2100	fi
2101
2102
2103	# set module load command and export for subjob
2104	if [[ "$modules" != "" ]]
2105	then
2106	export module_calls="module load ${modules};"
2107	fi
2108
2109	# bugfix for wrong netcdf module
2110	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2111	then
2112	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2113	then
2114	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2115	fi
2116	fi
2117
2118
2119	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2120	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2121	then
2122	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2123	then
2124	mpilib=mpt
2125	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2126	then
2127	mpilib=mvapich
2128	fi
2129	fi
2130
2131
2132
2133	###########################################################################
2134	# HEADER-AUSGABE
2135	###########################################################################
2136
2137
2138	calltime=$(date)
2139	printf "\n"
2140	# [[ $silent = false ]] && clear
2141	printf "#--------------------------------------------------------------# \n"
2142	printf "\| $version$calltime \| \n"
2143	printf "\| \| \n"
2144	spalte1="called on:"; spalte2=$localhost_realname
2145	printf "\| $spalte1$spalte2 \| \n"
2146	if [[ $local_compile = false ]]
2147	then
2148	if [[ $do_remote = true ]]
2149	then
2150	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2151	else
2152	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2153	fi
2154	else
2155	spalte1="compiling test only!"; spalte2=""
2156	fi
2157	printf "\| $spalte1$spalte2 \| \n"
2158	if [[ -n $numprocs ]]
2159	then
2160	spalte1="number of PEs:"; spalte2=$numprocs
2161	printf "\| $spalte1$spalte2 \| \n"
2162	fi
2163	if [[ -n $tasks_per_node ]]
2164	then
2165	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2166	printf "\| $spalte1$spalte2 \| \n"
2167	fi
2168	if [[ $use_openmp = true ]]
2169	then
2170	spalte1="threads per task:"; spalte2="$threads_per_task"
2171	printf "\| $spalte1$spalte2 \| \n"
2172	fi
2173	printf "\| \| \n"
2174	if [[ $do_compile = true ]]
2175	then
2176	if [[ "$mopts" != "" ]]
2177	then
2178	spalte1="make options:"; spalte2=$mopts
2179	printf "\| $spalte1$spalte2 \| \n"
2180	zeile=$(echo "$mopts" \| cut -c41-)
2181	while [[ "$zeile" != "" ]]
2182	do
2183	spalte1=""
2184	spalte2=$zeile
2185	printf "\| $spalte1$spalte2 \| \n"
2186	zeile=$(echo "$zeile" \| cut -c41-)
2187	done
2188	fi
2189
2190	spalte1="cpp directives:"; spalte2=$cpp_options
2191	printf "\| $spalte1$spalte2 \| \n"
2192	zeile=$(echo "$cpp_options" \| cut -c41-)
2193	while [[ "$zeile" != "" ]]
2194	do
2195	spalte1=""
2196	spalte2=$zeile
2197	printf "\| $spalte1$spalte2 \| \n"
2198	zeile=$(echo "$zeile" \| cut -c41-)
2199	done
2200
2201	spalte1="compiler options:"; spalte2="$fopts"
2202	printf "\| $spalte1$spalte2 \| \n"
2203	zeile=$(echo "$fopts" \| cut -c41-)
2204	while [[ "$zeile" != "" ]]
2205	do
2206	spalte1=""
2207	spalte2=$zeile
2208	printf "\| $spalte1$spalte2 \| \n"
2209	zeile=$(echo "$zeile" \| cut -c41-)
2210	done
2211
2212	spalte1="linker options:"; spalte2=$lopts
2213	printf "\| $spalte1$spalte2 \| \n"
2214	zeile=$(echo "$lopts" \| cut -c41-)
2215	while [[ "$zeile" != "" ]]
2216	do
2217	spalte1=""
2218	spalte2=$zeile
2219	printf "\| $spalte1$spalte2 \| \n"
2220	zeile=$(echo "$zeile" \| cut -c41-)
2221	done
2222
2223	spalte1="modules to be load:"; spalte2=$modules
2224	printf "\| $spalte1$spalte2 \| \n"
2225	zeile=$(echo "$modules" \| cut -c41-)
2226	while [[ "$zeile" != "" ]]
2227	do
2228	spalte1=""
2229	spalte2=$zeile
2230	printf "\| $spalte1$spalte2 \| \n"
2231	zeile=$(echo "$zeile" \| cut -c41-)
2232	done
2233
2234	spalte1="main program":; spalte2=$mainprog
2235	printf "\| $spalte1$spalte2 \| \n"
2236	else
2237	spalte1=executable:; spalte2=$executable
2238	printf "\| $spalte1$spalte2 \| \n"
2239	fi
2240	printf "\| \| \n"
2241	spalte1="base name of files":; spalte2=$fname
2242	printf "\| $spalte1$spalte2 \| \n"
2243	if [[ $fname != $afname ]]
2244	then
2245	spalte1="base name of input files":; spalte2=$afname
2246	printf "\| $spalte1$spalte2 \| \n"
2247	fi
2248	spalte1="INPUT control list":; spalte2=$input_list
2249	printf "\| $spalte1$spalte2 \| \n"
2250	spalte1="OUTPUT control list":; spalte2=$output_list
2251	printf "\| $spalte1$spalte2 \| \n"
2252
2253	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2254	then
2255	spalte1="memory demand / PE":; spalte2="$memory MB"
2256	printf "\| $spalte1$spalte2 \| \n"
2257	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2258	printf "\| $spalte1$spalte2 \| \n"
2259	fi
2260
2261	if [[ $do_compile = true ]]
2262	then
2263	printf "\| \| \n"
2264	printf "\| Files to be compiled: \| \n"
2265	zeile=$source_list
2266	while [[ "$zeile" != "" ]]
2267	do
2268	spalte3=$zeile
2269	printf "\| $spalte3 \| \n"
2270	zeile=$(echo "$zeile" \| cut -c61-)
2271	done
2272	fi
2273	printf "#--------------------------------------------------------------#"
2274
2275
2276
2277	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2278	if [[ $do_trace = true ]]
2279	then
2280	(( i = 0 ))
2281	while (( i < iin ))
2282	do
2283	(( i = i + 1 ))
2284	if (( i == 1 ))
2285	then
2286	printf "\n\n >>> INPUT-file assignments:\n"
2287	fi
2288	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2289	done
2290	(( i = 0 ))
2291	while (( i < iout ))
2292	do
2293	(( i = i + 1 ))
2294	if (( i == 1 ))
2295	then
2296	printf "\n\n >>> OUTPUT-file assignments:\n"
2297	fi
2298	printf "\n ${localout[$i]} : ${pathout[$i]}"
2299	done
2300	(( i = 0 ))
2301	while (( i < iic ))
2302	do
2303	(( i = i + 1 ))
2304	if (( i == 1 ))
2305	then
2306	printf "\n\n >>> INPUT-commands:\n"
2307	fi
2308	printf "\n ${in_command[$i]}"
2309	done
2310	(( i = 0 ))
2311	while (( i < ioc ))
2312	do
2313	(( i = i + 1 ))
2314	if (( i == 1 ))
2315	then
2316	printf "\n\n >>> OUTPUT-commands:\n"
2317	fi
2318	printf "\n ${out_command[$i]}"
2319	done
2320	fi
2321
2322
2323	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2324	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2325	then
2326	antwort=dummy
2327	printf "\n\n"
2328	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2329	do
2330	printf " >>> everything o.k. (y/n) ? "
2331	read antwort
2332	done
2333	if [[ $antwort = n \|\| $antwort = N ]]
2334	then
2335	locat=user_abort; (( iec = 0 )); exit
2336	fi
2337	if [[ $do_batch = true ]]
2338	then
2339	printf " >>> batch-job will be created and submitted"
2340	else
2341	if [[ $local_compile = false ]]
2342	then
2343	printf " >>> MRUN will now continue to execute on this machine"
2344	else
2345	printf " >>> a test compilation will now be carried out on this machine"
2346	fi
2347	fi
2348	fi
2349
2350
2351
2352
2353	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2354	# CHENDE AKTIONEN DURCHGEFUEHRT
2355	if [[ $do_batch = false ]]
2356	then
2357
2358
2359	# TEMPORAEREN KATALOG ERZEUGEN
2360	mkdir -p $TEMPDIR
2361	chmod go+rx $TEMPDIR
2362	tmpcreate=true
2363
2364	# set striping on lustre file system
2365	# if [[ $localhost = lcsgih ]]
2366	# then
2367	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2368	# lfs getstripe $TEMPDIR
2369	# fi
2370
2371
2372	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2373	# TEMPORAERES VERZEICHNIS KOPIEREN
2374	if [[ $do_compile = true ]]
2375	then
2376
2377	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2378	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2379	if [[ $localhost = nech ]]
2380	then
2381	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2382	if mkdir -p $TEMPDIR_COMPILE
2383	then
2384	printf "\n *** \"$TEMPDIR_COMPILE\" "
2385	printf "\n is generated as temporary directory for cross compiling\n"
2386	else
2387	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2388	printf "\n needed for cross compilation failed"
2389	locat=compile
2390	exit
2391	fi
2392	else
2393	TEMPDIR_COMPILE=$TEMPDIR
2394	fi
2395
2396
2397	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2398	line=""
2399	grep "%depository_path" $config_file > tmp_mrun
2400	while read line
2401	do
2402	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2403	then
2404	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2405	then
2406	global_depository_path=`echo $line \| cut -d" " -s -f2`
2407	fi
2408	fi
2409	done < tmp_mrun
2410
2411	line=""
2412	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2413	while read line
2414	do
2415	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2416	then
2417	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2418	then
2419	local_depository_path=`echo $line \| cut -d" " -s -f2`
2420	fi
2421	fi
2422	done < tmp_mrun
2423
2424	if [[ "$local_depository_path" = "" ]]
2425	then
2426	if [[ "$global_depository_path" != "" ]]
2427	then
2428	local_depository_path=$global_depository_path
2429	else
2430	printf "\n\n +++ no depository path found in configuration file"
2431	printf "\n for local host \"$localhost\" "
2432	printf "\n please set \"\%depository_path\" in configuration file\n"
2433	locat=config_file; exit
2434	fi
2435	fi
2436	eval local_depository_path=$local_depository_path
2437	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2438	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2439
2440
2441	basename=`print $mainprog \| cut -f1 -d"."`
2442	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2443	if [[ ! -f $make_depository ]]
2444	then
2445	printf "\n"
2446	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2447	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2448	else
2449	cp $make_depository $TEMPDIR_COMPILE
2450	cd $TEMPDIR_COMPILE
2451	tar -xf $make_depository > /dev/null 2>&1
2452	cd - > /dev/null
2453	fi
2454
2455	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2456
2457	else
2458
2459	cp $executable ${TEMPDIR}/a.out
2460
2461	fi
2462
2463
2464	# WECHSEL IN TEMPORAEREN KATALOG
2465	cd $TEMPDIR
2466	printf "\n *** changed to temporary directory: $TEMPDIR"
2467
2468
2469	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2470	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2471	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2472	# ERMITTELN
2473	(( i = 0 ))
2474	while (( i < iout ))
2475	do
2476	(( i = i + 1 ))
2477	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2478	then
2479	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2480	else
2481	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2482	fi
2483	done
2484
2485
2486	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2487	if [[ $do_compile = true ]]
2488	then
2489
2490
2491	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2492	printf "\n\n\n *** compilation starts \n$striche\n"
2493	printf " *** compilation with make using following options:\n"
2494	printf " make depository: $make_depository"
2495	if [[ "$mopts" != "" ]]
2496	then
2497	printf " make options: $mopts\n"
2498	fi
2499	printf " compilername: $compiler_name\n"
2500	printf " compiler options: $fopts\n"
2501	printf " preprocessor directives: $cpp_options \n"
2502	printf " linker options: $lopts \n"
2503	if [[ "$modules" != "" ]]
2504	then
2505	printf " modules to be load: $modules \n"
2506	fi
2507	printf " source code files: $source_list \n"
2508
2509	if [[ $localhost = nech ]]
2510	then
2511	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2512	cp $TEMPDIR_COMPILE/a.out .
2513	[[ $? != 0 ]] && compile_error=true
2514	rm -rf $TEMPDIR_COMPILE
2515	elif [[ $localhost = ibmh ]]
2516	then
2517	printf " compiler is called via ssh on \"plogin1\" \n"
2518	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2519	[[ ! -f a.out ]] && compile_error=true
2520	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2521	elif [[ $localhost = lcsgib ]]
2522	then
2523	printf " compiler is called via ssh on \"bicegate0\" \n"
2524	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2525	[[ ! -f a.out ]] && compile_error=true
2526	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2527	elif [[ $localhost = lcsgih ]]
2528	then
2529	printf " compiler is called via ssh on \"hicegate0\" \n"
2530	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2531	[[ ! -f a.out ]] && compile_error=true
2532	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2533	else
2534	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2535	[[ "$module_calls" != "" ]] && eval $module_calls
2536	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2537	fi
2538
2539	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2540	then
2541	printf "\n +++ error occured while compiling or linking"
2542	locat=compile
2543
2544	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2545	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2546	# then
2547	exit
2548	# else
2549	# locat=normal
2550	# fi
2551	else
2552	printf "$striche\n *** compilation finished \n"
2553	fi
2554	fi
2555
2556
2557	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2558	if [[ $local_compile = true ]]
2559	then
2560	cd $HOME
2561	rm -rf $TEMPDIR
2562	locat=local_compile; exit
2563	fi
2564
2565
2566	# BEREITSTELLEN DER INPUT-DATEIEN
2567	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2568	(( i = 0 ))
2569	while (( i < iin ))
2570	do
2571	(( i = i + 1 ))
2572	if (( i == 1 ))
2573	then
2574	printf "\n\n *** providing INPUT-files:\n$striche"
2575	fi
2576
2577
2578	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2579	if [[ "${transin[$i]}" = unavailable ]]
2580	then
2581	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2582	then
2583	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2584	printf "\n is not available!"
2585	else
2586	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2587	printf "\n is not available!"
2588	fi
2589	continue
2590	fi
2591
2592	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2593	files_for_pes=false; datentyp=file
2594	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2595	then
2596	files_for_pes=true; datentyp=directory
2597	actionin[$i]=""
2598	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2599	then
2600	actionin[$i]=""
2601	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2602	then
2603	files_for_pes=true; datentyp=directory
2604	actionin[$i]="ar"
2605	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2606	then
2607	actionin[$i]="ar"
2608	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2609	then
2610	files_for_pes=true; datentyp=directory
2611	actionin[$i]="fl"
2612	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2613	then
2614	actionin[$i]="fl"
2615	fi
2616
2617	if [[ $files_for_pes = true ]]
2618	then
2619	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2620	else
2621	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2622	fi
2623
2624	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2625	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2626	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2627	# SERVER ZU HOLEN
2628	if [[ "${actionin[$i]}" = fl ]]
2629	then
2630	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2631	if [[ $files_for_pes = false ]]
2632	then
2633	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2634	then
2635	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2636	got_tmp[$i]=true
2637	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2638	then
2639	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2640	printf "\n *** trying to use backup copy in \"$WORK\" "
2641	cp $WORK/${frelin[$i]} ${localin[$i]}
2642	else
2643	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2644	printf "\n or \"$tmp_data_catalog\" does not exist!"
2645	printf "\n *** trying to get copy from archive"
2646	actionin[$i]=ar
2647	fi
2648	else
2649	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2650	then
2651	mkdir ${localin[$i]}
2652	cd $tmp_data_catalog/${frelin[$i]}
2653	for file in $(ls *)
2654	do
2655	ln $file $TEMPDIR/${localin[$i]}
2656	done
2657	cd $TEMPDIR
2658	got_tmp[$i]=true
2659	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2660	then
2661	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2662	printf "\n *** trying to use backup copy in \"$WORK\" "
2663	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2664	else
2665	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2666	printf "\n or \"$tmp_data_catalog\" does not exist!"
2667	printf "\n *** trying to get copy from archive"
2668	actionin[$i]=ar
2669	fi
2670	fi
2671	fi
2672
2673
2674	# DATEI LIEGT AUF ARCHIV-SERVER
2675	if [[ "${actionin[$i]}" = ar ]]
2676	then
2677
2678	if [[ $files_for_pes = false ]]
2679	then
2680	printf "\n file will be restored from archive-system ($archive_system)!"
2681	else
2682	printf "\n directory will be restored from archive-system ($archive_system)!"
2683	fi
2684
2685	file_restored=false
2686
2687	if [[ $archive_system = asterix ]]
2688	then
2689	do_stagein=true
2690	(( stagein_anz = 0 ))
2691	while [[ $do_stagein = true ]]
2692	do
2693	if [[ $files_for_pes = false ]]
2694	then
2695	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2696	else
2697	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2698	fi
2699	cat STAGEIN_OUTPUT
2700	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2701	then
2702	file_restored=true
2703	do_stagein=false
2704	else
2705	(( stagein_anz = stagein_anz + 1 ))
2706	if (( stagein_anz == 10 ))
2707	then
2708	printf "\n +++ stagein stoped after 10 tries"
2709	locat=stage
2710	exit
2711	fi
2712	printf "\n +++ restoring from archive failed, trying again:"
2713	sleep 900
2714	fi
2715	done
2716	elif [[ $archive_system = DMF ]]
2717	then
2718	if [[ $files_for_pes = false ]]
2719	then
2720	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2721	locat=DMF
2722	exit
2723	else
2724	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2725	cp -r $ARCHIVE/${frelin[$i]} $PWD
2726	file_restored=true
2727	fi
2728	elif [[ $archive_system = tivoli ]]
2729	then
2730	if [[ $files_for_pes = false ]]
2731	then
2732	if [[ $localhost = lcsgih ]]
2733	then
2734	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2735	else
2736	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2737	fi
2738	else
2739	(( inode = 0 ))
2740	while (( inode < nodes ))
2741	do
2742	if [[ $localhost = lcsgih ]]
2743	then
2744	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2745	else
2746	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2747	fi
2748	(( inode = inode + 1 ))
2749	done
2750	fi
2751	file_restored=true
2752	elif [[ $archive_system = ut ]]
2753	then
2754	if [[ $files_for_pes = false ]]
2755	then
2756	cp $UT/${frelin[$i]} .
2757	else
2758	(( inode = 0 ))
2759	while (( inode < nodes ))
2760	do
2761	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2762	(( inode = inode + 1 ))
2763	done
2764	fi
2765	file_restored=true
2766	else
2767	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2768	locat=rearchive
2769	exit
2770	fi
2771
2772	if [[ $file_restored = true ]]
2773	then
2774
2775	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2776	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2777	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2778	if [[ $files_for_pes = false ]]
2779	then
2780	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2781	else
2782	mkdir $tmp_data_catalog/${frelin[$i]}
2783	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2784	fi
2785	got_tmp[$i]=true
2786
2787	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2788	mv ${frelin[$i]} ${localin[$i]}
2789
2790	fi
2791	fi
2792
2793
2794	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2795	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2796	then
2797
2798	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2799	then
2800
2801	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2802	printf "\n file will be provided for $numprocs processors"
2803	mkdir ${localin[$i]}
2804	ival=$numprocs
2805	(( ii = 0 ))
2806	while (( ii <= ival-1 ))
2807	do
2808	if (( ii < 10 ))
2809	then
2810	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2811	elif (( ii < 100 ))
2812	then
2813	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2814	elif (( ii < 1000 ))
2815	then
2816	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2817	else
2818	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2819	fi
2820	(( ii = ii + 1 ))
2821	done
2822
2823	else
2824
2825	if [[ $files_for_pes = true ]]
2826	then
2827
2828	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2829	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2830	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2831	# PER MOVE UMBENANNT WERDEN
2832	printf "\n providing $numprocs files for the respective processors"
2833	mkdir ${localin[$i]}
2834	if [[ $link_local_input = true ]]
2835	then
2836	printf " using ln -f\n"
2837	cd ${absnamein[$i]}
2838	for file in $(ls *)
2839	do
2840	ln -f $file ${localin[$i]}
2841	done
2842	cd $TEMPDIR
2843	fi
2844	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2845	if [[ ! -f "${localin[$i]}/_0000" ]]
2846	then
2847	if [[ $link_local_input = true ]]
2848	then
2849	printf " ln failed for .../_0000, using cp...\n"
2850	fi
2851	cp -r ${absnamein[$i]}/* ${localin[$i]}
2852	fi
2853
2854	else
2855	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2856	if [[ $link_local_input = true ]]
2857	then
2858	printf " using ln -f\n"
2859	ln -f ${absnamein[$i]} ${localin[$i]}
2860	fi
2861	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2862	if [[ ! -f "${localin[$i]}" ]]
2863	then
2864	if [[ $link_local_input = true ]]
2865	then
2866	printf " ln failed, using cp...\n"
2867	fi
2868	cp ${absnamein[$i]} ${localin[$i]}
2869	fi
2870	fi
2871	fi
2872	fi
2873
2874	done
2875	if (( i != 0 ))
2876	then
2877	printf "\n$striche\n *** all INPUT-files provided \n"
2878	fi
2879
2880
2881	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2882	(( i = 0 ))
2883	while (( i < iic ))
2884	do
2885	(( i = i + 1 ))
2886	if (( i == 1 ))
2887	then
2888	printf "\n\n *** execution of INPUT-commands:\n$striche"
2889	fi
2890	printf "\n >>> ${in_command[$i]}"
2891	eval ${in_command[$i]}
2892	if (( i == iic ))
2893	then
2894	printf "\n$striche\n"
2895	fi
2896	done
2897
2898
2899	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2900	cpurest=${cpumax}.
2901
2902
2903	# START DVR STREAMING SERVER
2904	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2905	then
2906	if [[ "$dvr_server" != "" ]]
2907	then
2908
2909	printf "\n\n *** preparing the dvr streaming server configuration file"
2910
2911	# Check, if a dvr server is already running
2912	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2913	if [[ "$running_dvrserver_id" != "" ]]
2914	then
2915
2916	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2917	printf "\n This server is used instead starting a new one!"
2918	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2919
2920	else
2921
2922	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2923	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2924	then
2925	cp ${PALM_BIN}/.dvrserver.config .
2926
2927	# Entering the BASEDIR, UID and GID into this file
2928	user_id=`id -u`
2929	group_id=`id -g`
2930	# & is needed as seperator, because TEMPDIR contains /
2931	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2932	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2933	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2934	mv .dvrserver.3 .dvrserver.config
2935	rm .dvrserver.1 .dvrserver.2
2936
2937	# Start dvr server in background, get his id and print on terminal
2938	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2939	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2940	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2941	local_dvrserver_running=.TRUE.
2942	else
2943	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2944	printf "\n \"$PALM_BIN\" "
2945	locat=dvr
2946	exit
2947	fi
2948
2949	fi
2950
2951	else
2952	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2953	fi
2954	fi
2955
2956
2957	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2958	# LESEN VON PALM)
2959	cat > ENVPAR << %%END%%
2960	&envpar run_identifier = '$fname', host = '$localhost',
2961	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2962	maximum_cpu_time_allowed = ${cpumax}.,
2963	revision = '$global_revision',
2964	local_dvrserver_running = $local_dvrserver_running /
2965
2966	%%END%%
2967
2968
2969	# PROGRAMMSTART
2970	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2971	PATH=$PATH:$TEMPDIR
2972
2973	# MPI debug option (argument checking, slows down execution due to increased latency)
2974	if [[ "$mpi_debug" = true ]]
2975	then
2976	export MPI_CHECK_ARGS=1
2977	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
2978	fi
2979
2980	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2981	then
2982	if [[ "$ENVIRONMENT" = BATCH ]]
2983	then
2984	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2985	then
2986	printf "\n +++ debug is allowed in interactive mode only"
2987	locat=debug
2988	exit
2989	fi
2990	fi
2991	if [[ $localhost = decalpha ]]
2992	then
2993	dxladebug a.out
2994	elif [[ $localhost = ibmh ]]
2995	then
2996
2997	# SETUP THE IBM MPI ENVIRONMENT
2998	export MP_SHARED_MEMORY=yes
2999	export AIXTHREADS_SCOPE=S
3000	export OMP_NUM_THREADS=$threads_per_task
3001	export AUTHSTATE=files
3002	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3003
3004	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3005	export MP_ADAPTER_USE=shared
3006	export MP_CPU_USE=multiple
3007	export MP_TIMEOUT=1200
3008
3009	unset MP_TASK_AFFINITY
3010
3011	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3012	#(( ii = 1 ))
3013	#while (( ii <= $numprocs ))
3014	#do
3015	# echo $localhost_realname >> hostfile
3016	# (( ii = ii + 1 ))
3017	#done
3018	#export MP_HOSTFILE=hostfile
3019
3020	if [[ "$LOADLBATCH" = yes ]]
3021	then
3022	totalview poe a.out $ROPTS
3023	else
3024	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3025	export TVDSVRLAUNCHCMD=ssh
3026	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3027	fi
3028	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3029	then
3030	# CURRENTLY NO DEBUGGER ON LCSGI
3031	if [[ $run_coupled_model = true ]]
3032	then
3033	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3034	locat=debug
3035	exit
3036	else
3037	echo "no_coupling" > runfile_atmos
3038	fi
3039	(( ii = $numprocs / $threads_per_task ))
3040	export OMP_NUM_THREADS=$threads_per_task
3041	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3042	if [[ $threads_per_task != 1 ]]
3043	then
3044	printf "\n threads per task: $threads_per_task"
3045	fi
3046	printf "\n\n"
3047	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3048	then
3049	# export MPI_LAUNCH_TIMEOUT=360
3050	if [[ "$totalview" = true ]]
3051	then
3052	printf "\n running totalview debugger"
3053	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
3054	else
3055	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3056	fi
3057	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3058	then
3059	# ulimit -s 300000 # A too large stack size causes problems
3060	# export MV2_NUM_PORTS=2
3061	# export MV2_CPU_MAPPING=0:1:2:3
3062	if [[ "$totalview" = true ]]
3063	then
3064	printf "\n running totalview debugger"
3065	mpiexec -tv ./a.out $ROPTS < runfile_atmos
3066	else
3067	mpiexec ./a.out $ROPTS < runfile_atmos
3068	fi
3069	fi
3070	else
3071	printf "\n +++ no debug available on \"$localhost\" "
3072	printf "\n or not implemented in mrun so far"
3073	locat=debug
3074	exit
3075	fi
3076
3077	# end debug mode
3078	else
3079
3080	# normal execution
3081	if [[ -n $numprocs ]]
3082	then
3083	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3084	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3085	then
3086	# SETUP THE IBM MPI ENVIRONMENT
3087	if [[ $host != ibmh ]]
3088	then
3089	export MP_SHARED_MEMORY=yes
3090	export AIXTHREAD_SCOPE=S
3091	export OMP_NUM_THREADS=$threads_per_task
3092	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3093	export AUTHSTATE=files
3094	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3095	# export MP_PRINTENV=yes
3096
3097	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3098	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3099	export MP_WAIT_MODE=poll
3100	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3101	fi
3102	if [[ "$LOADLBATCH" = yes ]]
3103	then
3104	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3105	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3106	then
3107	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3108	else
3109	if [[ $run_coupled_model = false ]]
3110	then
3111	if [[ "$ocean_file_appendix" = true ]]
3112	then
3113	echo "precursor_ocean" > runfile_atmos
3114	else
3115	echo "precursor_atmos" > runfile_atmos
3116	fi
3117	else
3118	(( iia = $numprocs_atmos / $threads_per_task ))
3119	(( iio = $numprocs_ocean / $threads_per_task ))
3120	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3121	printf "\n using $coupled_mode coupling"
3122	printf "\n\n"
3123	echo "coupled_run $iia $iio" > runfile_atmos
3124	fi
3125	poe ./a.out $ROPTS < runfile_atmos
3126	fi
3127	else
3128	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3129	then
3130	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3131	elif [[ $localhost = ibmku \|\| $localhost = ibmy ]]
3132	then
3133	if [[ -f $hostfile ]]
3134	then
3135	cp $hostfile hostfile
3136	else
3137	(( ii = 1 ))
3138	while (( ii <= $numprocs ))
3139	do
3140	echo $localhost_realname >> hostfile
3141	(( ii = ii + 1 ))
3142	done
3143	fi
3144	export MP_HOSTFILE=hostfile
3145	if [[ $run_coupled_model = false ]]
3146	then
3147	if [[ "$ocean_file_appendix" = true ]]
3148	then
3149	echo "precursor_ocean" > runfile_atmos
3150	else
3151	echo "precursor_atmos" > runfile_atmos
3152	fi
3153	else
3154	(( iia = $numprocs_atmos / $threads_per_task ))
3155	(( iio = $numprocs_ocean / $threads_per_task ))
3156	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3157	printf "\n using $coupled_mode coupling"
3158	printf "\n\n"
3159	echo "coupled_run $iia $iio" > runfile_atmos
3160	fi
3161	if [[ $localhost = ibmy ]]
3162	then
3163	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3164	else
3165	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3166	fi
3167
3168	else
3169	if [[ "$host_file" = "" ]]
3170	then
3171	printf "\n +++ no hostfile given in configuration file"
3172	locat=config_file
3173	exit
3174	else
3175	eval host_file=$host_file
3176	fi
3177	export MP_HOSTFILE=$host_file
3178	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3179	fi
3180	fi
3181	elif [[ $host = nech \|\| $host = necriam ]]
3182	then
3183	(( ii = nodes ))
3184	if [[ $ii = 1 ]]
3185	then
3186	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3187	export MPIPROGINF=YES
3188	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3189	echo "*** execution on single node with mpirun"
3190	mpirun -np $numprocs ./a.out $ROPTS
3191	else
3192	(( i = 0 ))
3193	while (( i < ii ))
3194	do
3195	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3196	(( i = i + 1 ))
3197	done
3198
3199	echo "#!/bin/sh" > mpi_exec_shell
3200	echo " " >> mpi_exec_shell
3201	echo "set -u" >> mpi_exec_shell
3202	echo "F_ERRCNT=0" >> mpi_exec_shell
3203	echo "MPIPROGINV=YES" >> mpi_exec_shell
3204	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3205	echo "cpurest=$cpurest" >> mpi_exec_shell
3206	echo "fname=$fname" >> mpi_exec_shell
3207	echo "localhost=$localhost" >> mpi_exec_shell
3208	echo "return_addres=$return_addres" >> mpi_exec_shell
3209	echo "return_username=$return_username" >> mpi_exec_shell
3210	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3211	echo "write_binary=$write_binary" >> mpi_exec_shell
3212	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3213	echo " " >> mpi_exec_shell
3214	echo "export F_ERRCNT" >> mpi_exec_shell
3215	echo "export MPIPROGINV" >> mpi_exec_shell
3216	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3217	echo "export cpurest" >> mpi_exec_shell
3218	echo "export fname" >> mpi_exec_shell
3219	echo "export localhost" >> mpi_exec_shell
3220	echo "export return_addres" >> mpi_exec_shell
3221	echo "export return_username" >> mpi_exec_shell
3222	echo "export tasks_per_node" >> mpi_exec_shell
3223	echo "export write_binary" >> mpi_exec_shell
3224	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3225	echo " " >> mpi_exec_shell
3226	echo "exec ./a.out" >> mpi_exec_shell
3227
3228	chmod u+x mpi_exec_shell
3229	export MPIPROGINF=YES
3230	mpirun -f multinode_config &
3231	wait
3232
3233	fi
3234	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3235	then
3236
3237	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3238	# DOES NOT EXIST
3239	if [[ $host != lcsgih && $host != lcsgib ]]
3240	then
3241	if [[ -f $hostfile ]]
3242	then
3243	cp $hostfile hostfile
3244	else
3245	(( ii = 1 ))
3246	while (( ii <= $numprocs / $threads_per_task ))
3247	do
3248	echo $localhost_realname >> hostfile
3249	(( ii = ii + 1 ))
3250	done
3251	fi
3252	eval zeile=\"`head -n $ii hostfile`\"
3253	printf "\n *** running on: $zeile"
3254	fi
3255
3256	(( ii = $numprocs / $threads_per_task ))
3257	export OMP_NUM_THREADS=$threads_per_task
3258	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3259	if [[ $threads_per_task != 1 ]]
3260	then
3261	# increase stack size to unlimited, because large runs
3262	# may abort otherwise
3263	ulimit -Ss unlimited
3264	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3265	fi
3266	if [[ $run_coupled_model = false ]]
3267	then
3268	if [[ "$ocean_file_appendix" = true ]]
3269	then
3270	echo "precursor_ocean" > runfile_atmos
3271	else
3272	echo "precursor_atmos" > runfile_atmos
3273	fi
3274	printf "\n\n"
3275	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3276	then
3277	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3278	then
3279	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3280	# export MPI_DSM_DISTRIBUTE=1
3281	# MPI_DSM_CPULIST: pin MPI processes to cores
3282	if [[ $use_openmp = false ]]
3283	then
3284	if [[ "$sgi_feature" = ice2 ]]
3285	then
3286	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3287	else
3288	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3289	fi
3290	else
3291	unset MPI_DSM_CPULIST
3292	fi
3293	# MPI_IB_RAILS: use both IB rails on ICE2
3294	export MPI_BUFS_PER_HOST=512
3295	export MPI_IB_RAILS=2
3296	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3297	export MPI_CONNECTIONS_THRESHOLD=8192
3298	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3299	export MPI_TYPE_DEPTH=20
3300	echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3301	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3302
3303	# next is test for openmp usage
3304	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3305	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3306	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3307	then
3308	export MV2_NUM_PORTS=2
3309	# The default setting of MV2_CPU_MAPPING gives best results
3310	# export MV2_ENABLE_AFFINITY=1
3311	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3312	# if [[ "$sgi_feature" = ice2 ]]
3313	# then
3314	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3315	# else
3316	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3317	# fi
3318	[[ $use_openmp = true ]] && unset MV2_CPU_MAPPING
3319	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3320	if [[ $use_openmp = true ]]
3321	then
3322	mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3323	else
3324	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
3325	fi
3326	fi
3327	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3328	then
3329	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3330	else
3331	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3332	fi
3333	else
3334
3335	# currently there is no full MPI-2 support on ICE and XT4
3336	(( iia = $numprocs_atmos / $threads_per_task ))
3337	(( iio = $numprocs_ocean / $threads_per_task ))
3338	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3339	printf "\n using $coupled_mode coupling"
3340	printf "\n\n"
3341
3342	if [[ $coupled_mode = "mpi2" ]]
3343	then
3344	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3345	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3346	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3347	then
3348
3349	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3350	then
3351	# export MPI_LAUNCH_TIMEOUT=360
3352	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3353	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3354	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3355	then
3356	# ulimit -s 300000 # A too large stack size causes problems
3357	# export MV2_NUM_PORTS=2
3358	# export MV2_CPU_MAPPING=0:1:2:3
3359	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3360	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3361	fi
3362
3363	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3364	then
3365
3366	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3367	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3368
3369	else
3370	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3371	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3372	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3373	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3374	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3375	fi
3376	wait
3377
3378	else
3379
3380	echo "coupled_run $iia $iio" > runfile_atmos
3381	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3382	then
3383
3384	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3385	then
3386	# export MPI_LAUNCH_TIMEOUT=360
3387	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3388	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3389	then
3390	# ulimit -s 300000 # A too large stack size causes problems
3391	# export MV2_NUM_PORTS=2
3392	# export MV2_CPU_MAPPING=0:1:2:3
3393	mpiexec ./a.out $ROPTS < runfile_atmos
3394	fi
3395
3396	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3397	then
3398
3399	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3400
3401	elif [[ $host = lck ]]
3402	then
3403	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3404	fi
3405	wait
3406	fi
3407
3408	fi
3409	elif [[ $host = decalpha ]]
3410	then
3411	dmpirun -np $numprocs a.out $ROPTS
3412	elif [[ $host = lckyoto ]]
3413	then
3414	set -xv
3415	export P4_RSHCOMMAND=plesh
3416	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3417	if [[ "$ENVIRONMENT" = BATCH ]]
3418	then
3419	if [[ "$cond2" = fujitsu ]]
3420	then
3421	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3422	elif [[ "cond2" = pgi ]]
3423	then
3424	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3425	else
3426	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3427	fi
3428	else
3429	if [[ "$cond2" = "" ]]
3430	then
3431	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3432	else
3433	mpirun -np $numprocs ./a.out $ROPTS
3434	fi
3435	fi
3436	set +xv
3437	elif [[ $host = lctit ]]
3438	then
3439	mpirun -np $numprocs -hostfile $PBS_NODEFILE ./a.out $ROPTS
3440	else
3441	mpprun -n $numprocs a.out $ROPTS
3442	fi
3443	[[ $? != 0 ]] && execution_error=true
3444
3445
3446	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3447	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3448	then
3449	apprentice
3450	fi
3451	else
3452	a.out $ROPTS
3453	fi
3454	fi
3455	if [[ $? != 0 \|\| $execution_error = true ]]
3456	then
3457
3458	# ABBRUCH BEI LAUFZEITFEHLER
3459	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3460	printf "\n +++ runtime error occured"
3461	locat=execution
3462	exit
3463	else
3464	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3465	printf "\n$striche\n *** execution finished \n"
3466
3467	# Stop the dvr streaming server and process the dvr output in order
3468	# to create dvrs- and html-files containing all streams
3469	if [[ "$dvrserver_id" != "" ]]
3470	then
3471	kill $dvrserver_id
3472	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3473
3474	# If there is a directory, data have been output by the
3475	# streaming server. Otherwise, user has chosen dvrp_output=local
3476	if [[ -d DATA_DVR ]]
3477	then
3478
3479	# Add the current dvr configuration file to the dvr output
3480	# directory
3481	cp .dvrserver.config DATA_DVR
3482
3483	# Process the dvr output (option -s for also generating
3484	# sequence mode data)
3485	process_dvr_output -d DATA_DVR -f $fname -s
3486
3487	else
3488
3489	# Process the local output
3490	process_dvr_output -l -d DATA_DVR -f $fname
3491
3492	fi
3493
3494	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3495	then
3496
3497	# Process dvr output generated in local mode (dvrp_output=local)
3498	process_dvr_output -l -d DATA_DVR -f $fname
3499
3500	fi
3501	fi
3502
3503
3504
3505	# Call of combine_plot_fields in order to merge single files written
3506	# by each PE into one file.
3507	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3508	then
3509	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3510	printf "\n 2d- and/or 3d-data may be incomplete!"
3511	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3512	else
3513	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3514	combine_plot_fields${block}.x
3515	fi
3516
3517
3518
3519	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3520	(( i = 0 ))
3521	while (( i < ioc ))
3522	do
3523	(( i = i + 1 ))
3524	if (( i == 1 ))
3525	then
3526	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3527	fi
3528	printf "\n >>> ${out_command[$i]}"
3529	eval ${out_command[$i]}
3530	if (( i == ioc ))
3531	then
3532	printf "\n$striche\n"
3533	fi
3534	done
3535
3536
3537	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3538	if [[ $do_trace = true ]]
3539	then
3540	printf "\n\n"
3541	ls -al
3542	fi
3543
3544
3545
3546	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3547	(( i = 0 ))
3548	while (( i < iout ))
3549	do
3550	(( i = i + 1 ))
3551	if (( i == 1 ))
3552	then
3553	printf "\n\n *** saving OUTPUT-files:\n$striche"
3554	fi
3555
3556	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3557	files_for_pes=false; filetyp=file
3558	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3559	then
3560	files_for_pes=true; filetyp=directory
3561	actionout[$i]=""
3562	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3563	then
3564	actionout[$i]=""
3565	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3566	then
3567	files_for_pes=true; filetyp=directory
3568	actionout[$i]="ar"
3569	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3570	then
3571	actionout[$i]="ar"
3572	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3573	then
3574	files_for_pes=true; filetyp=directory
3575	actionout[$i]="fl"
3576	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3577	then
3578	actionout[$i]="fl"
3579	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3580	then
3581	files_for_pes=true; filetyp=directory
3582	actionout[$i]="tr"
3583	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3584	then
3585	actionout[$i]="tr"
3586	fi
3587
3588	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3589	then
3590	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3591	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3592	then
3593	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3594	else
3595
3596
3597	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3598	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3599	# REMOTE-RECHNUNGEN
3600	if [[ "${actionout[$i]}" = tr ]]
3601	then
3602	if [[ $localhost != $fromhost ]]
3603	then
3604	if [[ $files_for_pes = false ]]
3605	then
3606	cps=""
3607	cst=""
3608	else
3609	cps=-c
3610	cst="/"
3611	fi
3612	if [[ $localhost = nech ]]
3613	then
3614
3615	# TRANSFER IN EIGENSTAENDIGEM JOB
3616	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3617	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3618	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3619	if [[ $files_for_pes = false ]]
3620	then
3621	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3622	else
3623	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3624	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3625	fi
3626
3627	echo "set -x" > transfer_${localout[$i]}
3628	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3629
3630	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3631	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3632	printf "\n or higher cycle\n"
3633	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3634
3635	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3636
3637	if [[ $localhost = nech ]]
3638	then
3639	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3640	else
3641	if [[ "$LOGNAME" = b323013 ]]
3642	then
3643	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3644	else
3645	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3646	fi
3647	fi
3648
3649	else
3650
3651	# TRANSFER INNERHALB DIESES JOBS
3652	transfer_failed=false
3653	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3654	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3655	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3656	[[ $? != 0 ]] && transfer_failed=true
3657
3658	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3659	# LOKALER MASCHINE ANLEGEN
3660	if [[ $transfer_failed = true ]]
3661	then
3662	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3663	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3664
3665	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3666	# ANLEGEN.
3667	eval local_catalog=${pathout[$i]}
3668	if [[ ! -d $local_catalog ]]
3669	then
3670	printf " *** local directory does not exist. Trying to create:\n"
3671	printf " $local_catalog \n"
3672	mkdir -p $local_catalog
3673	fi
3674	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3675	transfer_problems=true
3676	fi
3677	fi
3678	else
3679
3680	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3681	actionout[$i]=""
3682	fi
3683	fi
3684
3685
3686	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3687	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3688	# REMOTE-RECHNUNGEN
3689	if [[ "${actionout[$i]}" = tra ]]
3690	then
3691	if [[ $localhost != $fromhost ]]
3692	then
3693	if [[ $localhost = ibmh \|\| $localhost = nech ]]
3694	then
3695
3696	# TRANSFER IN EIGENSTAENDIGEM JOB
3697	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3698	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3699	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3700	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3701
3702	echo "set -x" > transfer_${localout[$i]}
3703	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3704
3705	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3706	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3707	printf "\n or higher cycle\n"
3708	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3709
3710	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3711
3712	if [[ $localhost = nech ]]
3713	then
3714	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3715	else
3716	if [[ $LOGNAME = b323013 ]]
3717	then
3718	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3719	else
3720	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3721	fi
3722	fi
3723
3724	else
3725
3726	# TRANSFER INNERHALB DIESES JOBS
3727	transfer_failed=false
3728	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3729	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3730	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3731	[[ $? != 0 ]] && transfer_failed=true
3732
3733	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3734	# LOKALER MASCHINE ANLEGEN
3735	if [[ $transfer_failed = true ]]
3736	then
3737	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3738	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3739
3740	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3741	# ANLEGEN
3742	eval local_catalog=${pathout[$i]}
3743	if [[ ! -d $local_catalog ]]
3744	then
3745	printf " *** local directory does not exist. Trying to create:\n"
3746	printf " $local_catalog \n"
3747	mkdir -p $local_catalog
3748	fi
3749
3750	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3751	transfer_problems=true
3752	fi
3753	fi
3754	else
3755
3756	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3757	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3758	actionout[$i]=a
3759	fi
3760	fi
3761
3762
3763	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3764	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3765	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3766	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3767	if [[ "${actionout[$i]}" = fl ]]
3768	then
3769	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3770	chmod g+rx $tmp_data_catalog
3771	if [[ $files_for_pes = false ]]
3772	then
3773	printf "\n >>> OUTPUT: ${localout[$i]} to"
3774	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3775	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3776	else
3777	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3778	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3779	mkdir $tmp_data_catalog/${frelout[$i]}
3780	cd ${localout[$i]}
3781	for file in $(ls *)
3782	do
3783	ln -f $file $tmp_data_catalog/${frelout[$i]}
3784	done
3785	cd $TEMPDIR
3786	fi
3787
3788
3789	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3790	if [[ $store_on_archive_system = true ]]
3791	then
3792
3793	if [[ $archive_system = asterix ]]
3794	then
3795	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3796	if [[ $files_for_pes = false ]]
3797	then
3798	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3799	else
3800	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3801	fi
3802	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3803	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3804	echo "then" >> archive_${frelout[$i]}
3805	echo " do_stageout=false" >> archive_${frelout[$i]}
3806	echo "else" >> archive_${frelout[$i]}
3807	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3808	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3809	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3810	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3811	if [[ $files_for_pes = false ]]
3812	then
3813	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3814	else
3815	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3816	fi
3817	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3818	echo "fi" >> archive_${frelout[$i]}
3819	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3820	elif [[ $archive_system = DMF ]]
3821	then
3822	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3823	if [[ $files_for_pes = false ]]
3824	then
3825	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3826	locat=DMF
3827	exit
3828	else
3829	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3830	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3831	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3832	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3833	fi
3834	elif [[ $archive_system = tivoli ]]
3835	then
3836	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3837	if [[ $files_for_pes = false ]]
3838	then
3839	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3840	echo "set -x" >> archive_${frelout[$i]}
3841	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3842	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3843	else
3844
3845	echo "set -x" >> archive_${frelout[$i]}
3846	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3847	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3848	cd $tmp_data_catalog
3849	all_files=`ls -1 ${frelout[$i]}/*`
3850	cd - > /dev/null
3851	(( inode = 0 ))
3852	(( tp1 = tasks_per_node + 1 ))
3853	while (( inode < nodes ))
3854	do
3855	# echo "*** all_files = \"$all_files\" "
3856	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3857	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3858	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3859	# echo "*** files = \"$files\" "
3860	# echo "*** all_files = \"$all_files\" "
3861	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3862	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3863	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3864	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3865	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3866	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3867	(( inode = inode + 1 ))
3868	done
3869	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3870	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3871	fi
3872	elif [[ $archive_system = ut ]]
3873	then
3874	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3875	if [[ $files_for_pes = false ]]
3876	then
3877	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3878	echo "set -x" >> archive_${frelout[$i]}
3879	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3880	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3881	else
3882
3883	echo "set -x" >> archive_${frelout[$i]}
3884	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3885	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3886	cd $tmp_data_catalog
3887	all_files=`ls -1 ${frelout[$i]}/*`
3888	cd - > /dev/null
3889	(( inode = 0 ))
3890	(( tp1 = tasks_per_node + 1 ))
3891	while (( inode < nodes ))
3892	do
3893	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3894	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3895	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3896	(( inode = inode + 1 ))
3897	done
3898	fi
3899	elif [[ $archive_system = none ]]
3900	then
3901	printf " +++ archiving on $localhost not available!\n"
3902	fi
3903
3904	if [[ $archive_system != none ]]
3905	then
3906	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3907	then
3908	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3909	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
3910	elif [[ $localhost = nech ]]
3911	then
3912	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3913	fi
3914	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3915	fi
3916	else
3917	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
3918	fi
3919
3920
3921	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3922	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3923	if [[ $files_for_pes = false ]]
3924	then
3925	cat /dev/null > ${pathout[$i]}
3926	else
3927	mkdir -p ${pathout[$i]}
3928	fi
3929
3930	fi
3931
3932
3933	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3934	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3935	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3936	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3937	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3938	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3939	if [[ "${actionout[$i]}" = ar ]]
3940	then
3941	if [[ $files_for_pes = false ]]
3942	then
3943	printf "\n >>> OUTPUT: ${localout[$i]} to"
3944	printf "\n ${pathout[$i]}"
3945	printf "\n File will be copied to archive-system ($archive_system) !\n"
3946	else
3947	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3948	printf "\n ${pathout[$i]}"
3949	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3950	fi
3951	mv ${localout[$i]} ${frelout[$i]}
3952
3953	file_saved=false
3954
3955	if [[ $archive_system = asterix ]]
3956	then
3957	do_stageout=true
3958	(( stageout_anz = 0 ))
3959	while [[ $do_stageout = true ]]
3960	do
3961	if [[ $files_for_pes = false ]]
3962	then
3963	stageout ${frelout[$i]} > STAGE_OUTPUT
3964	else
3965	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3966	fi
3967	cat STAGE_OUTPUT
3968	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3969	then
3970	file_saved=true
3971	do_stageout=false
3972	else
3973	if [[ $files_for_pes = false ]]
3974	then
3975	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3976	else
3977	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3978	fi
3979	(( stageout_anz = stageout_anz + 1 ))
3980	if (( stageout_anz == 10 ))
3981	then
3982	printf "\n +++ stoped after 10 unsuccessful tries!"
3983	archive_save=false
3984	do_stageout=false
3985	else
3986	printf "\n *** new try to store on archive after 15 min:"
3987	sleep 900
3988	fi
3989	fi
3990	done
3991	elif [[ $archive_system = DMF ]]
3992	then
3993	if [[ $files_for_pes = false ]]
3994	then
3995	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3996	locat=DMF
3997	exit
3998	else
3999	rm -rf $ARCHIVE/${frelout[$i]}
4000	cp -r ${frelout[$i]} $ARCHIVE
4001	fi
4002	file_saved=true
4003	elif [[ $archive_system = tivoli ]]
4004	then
4005	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4006	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4007	# GELEGT WERDEN
4008	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4009	chmod g+rx $tmp_data_catalog
4010	if [[ $files_for_pes = false ]]
4011	then
4012	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4013	else
4014	mkdir $tmp_data_catalog/${frelout[$i]}
4015	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4016	fi
4017
4018	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4019	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4020	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4021	if [[ $files_for_pes = false ]]
4022	then
4023	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4024	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4025	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4026	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4027	else
4028	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4029	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4030	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4031	fi
4032
4033	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4034	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4035	file_saved=true
4036
4037	elif [[ $archive_system = ut ]]
4038	then
4039	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4040	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4041	# GELEGT WERDEN
4042	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4043	chmod g+rx $tmp_data_catalog
4044	if [[ $files_for_pes = false ]]
4045	then
4046	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4047	else
4048	mkdir $tmp_data_catalog/${frelout[$i]}
4049	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4050	fi
4051
4052	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4053	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4054	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4055	if [[ $files_for_pes = false ]]
4056	then
4057	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4058	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4059	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4060	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4061	else
4062	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4063	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4064	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4065	fi
4066
4067	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4068	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4069	file_saved=true
4070
4071	else
4072	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4073	archive_save=false
4074	fi
4075	if [[ $file_saved = true ]]
4076	then
4077	if [[ $files_for_pes = false ]]
4078	then
4079	cat /dev/null > ${pathout[$i]}
4080	else
4081	mkdir -p ${pathout[$i]}
4082	fi
4083	fi
4084	fi
4085
4086	# APPEND AUF LOKALER MASCHINE
4087	if [[ "${actionout[$i]}" = "a" ]]
4088	then
4089	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4090	cat ${localout[$i]} >> ${pathout[$i]}
4091	fi
4092
4093	# KOPIEREN AUF LOKALER MASCHINE
4094	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4095	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4096	then
4097
4098	# KOPIEREN AUF EINPROZESSORMASCHINE
4099	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4100	then
4101	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4102	if [[ $link_local_output = true ]]
4103	then
4104	printf " using ln -f\n"
4105	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4106	fi
4107	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4108	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4109	then
4110	if [[ $link_local_output = true ]]
4111	then
4112	printf " ln failed, using cp...\n"
4113	fi
4114	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4115	fi
4116	else
4117	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4118	if [[ $link_local_output = true ]]
4119	then
4120	printf " using ln -f\n"
4121	ln -f ${localout[$i]} ${pathout[$i]}
4122	fi
4123	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4124	if [[ ! -f "${pathout[$i]}" ]]
4125	then
4126	if [[ $link_local_output = true ]]
4127	then
4128	printf " ln failed, using cp...\n"
4129	fi
4130	cp ${localout[$i]} ${pathout[$i]}
4131	fi
4132	fi
4133
4134	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4135	then
4136
4137	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4138	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4139	# WIRD DANN KOPIERT
4140	# PER MOVE UMBENANNT WERDEN
4141	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4142	if [[ $link_local_output = true ]]
4143	then
4144	printf " using ln -f\n"
4145	mkdir ${pathout[$i]}
4146	cd ${localout[$i]}
4147	for file in $(ls *)
4148	do
4149	ln -f $file ${pathout[$i]}
4150	done
4151	cd $TEMPDIR
4152	fi
4153	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4154	if [[ ! -f "${pathout[$i]}/_0000" ]]
4155	then
4156	if [[ $link_local_output = true ]]
4157	then
4158	printf " ln failed for .../_0000, using cp...\n"
4159	fi
4160	cp -r ${localout[$i]} ${pathout[$i]}
4161	fi
4162
4163	fi
4164	fi
4165	done
4166	if (( i != 0 ))
4167	then
4168	if [[ $transfer_problems = true ]]
4169	then
4170	printf "\n$striche\n *** OUTPUT-files saved"
4171	printf "\n +++ WARNING: some data transfers failed! \n"
4172	else
4173	printf "\n$striche\n *** all OUTPUT-files saved \n"
4174	fi
4175	fi
4176
4177
4178	# EVENTUELL FOLGEJOB STARTEN
4179	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4180	if [[ -f CONTINUE_RUN ]]
4181	then
4182
4183	if [[ $archive_save = true ]]
4184	then
4185
4186	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4187	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4188	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4189	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4190	# HANDEN
4191	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4192	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4193	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4194	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4195	then
4196	mc=`echo $mc \| sed 's/#/f/g'`
4197	fi
4198
4199
4200	# JOB STARTEN
4201	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4202	echo " $mc"
4203	printf "\n$striche\n"
4204	if [[ $localhost != $fromhost ]]
4205	then
4206
4207	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4208	then
4209	echo "*** ssh will be used to initiate restart-runs!"
4210	echo " return_addres=\"$return_addres\" "
4211	echo " return_username=\"$return_username\" "
4212	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4213	then
4214	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4215	else
4216	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4217	fi
4218	else
4219	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4220	locat=restart; exit
4221	fi
4222
4223	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4224	# DER AKTUELLE JOB ENDET
4225	if [[ $queue = special1q ]]
4226	then
4227	sleep 120
4228	else
4229	sleep 30
4230	fi
4231
4232	else
4233
4234	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4235	# RUFEN WERDEN, AUSSER AUF lcfimm
4236	cd $LOCAL_PWD
4237	if [[ $localhost = lcfimm ]]
4238	then
4239	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4240	else
4241	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4242	fi
4243	cd - > /dev/null
4244	fi
4245	printf "\n$striche\n *** restart-run initiated \n"
4246
4247
4248	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4249	# GEHOLT WORDEN SIND, LOESCHEN
4250	(( i = 0 ))
4251	while (( i < iin ))
4252	do
4253	(( i = i + 1 ))
4254	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4255	then
4256	rm -r $tmp_data_catalog/${frelin[$i]}
4257	fi
4258	done
4259
4260	else
4261
4262	printf "\n +++ no restart-run possible, since errors occured"
4263	printf "\n during the archive process"
4264	fi
4265
4266	fi
4267
4268
4269
4270	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4271	if [[ "$email_notification" != "none" ]]
4272	then
4273
4274	if [[ $localhost != $fromhost ]]
4275	then
4276	if [[ -f CONTINUE_RUN ]]
4277	then
4278	echo "PALM restart run necessary" > email_text
4279	echo "description header of actual run:" >> email_text
4280	cat CONTINUE_RUN >> email_text
4281	echo "mrun-command to restart:" >> email_text
4282	echo "$mc" >> email_text
4283	else
4284	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4285	fi
4286	mail $email_notification < email_text
4287	printf "\n *** email notification sent to \"$email_notification\" "
4288	fi
4289	fi
4290
4291
4292
4293	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4294	cd $HOME
4295	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4296
4297	else
4298
4299
4300	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4301	# CHENDE AKTIONEN DURCHGEFUEHRT
4302
4303	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4304	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4305	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4306	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4307	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4308	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4309	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4310	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4311	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4312	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4313	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4314	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4315	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4316	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4317	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4318	if [[ $use_openmp = true ]]
4319	then
4320	mrun_com=${mrun_com}" -O $threads_per_task"
4321	fi
4322	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4323	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4324	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4325	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4326	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4327	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4328	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4329	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4330	if [[ $do_remote = true ]]
4331	then
4332	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4333	fi
4334
4335
4336	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4337	jobfile=jobfile.$RANDOM
4338
4339
4340	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4341	echo "mkdir $TEMPDIR" >> $jobfile
4342	echo "cd $TEMPDIR" >> $jobfile
4343
4344
4345	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4346	if [[ $do_trace = true ]]
4347	then
4348	echo "set -x" >> $jobfile
4349	else
4350	echo "set +vx" >> $jobfile
4351	fi
4352
4353
4354	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4355	# DATEI FUER DEN JOB
4356	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4357	then
4358
4359	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4360	# KOPIEREN
4361	if [[ $restart_run != true ]]
4362	then
4363	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4364	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4365	fi
4366
4367	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4368	echo "set -x" >> $jobfile
4369	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4370	echo "export SOURCES_COMPLETE=true" >> $jobfile
4371
4372	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4373	# ARBEITSVERZEICHNIS VERSCHIEBEN
4374	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4375	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4376	echo "execute_mrun=true" >> $jobfile
4377	echo " " >> $jobfile
4378
4379	else
4380
4381	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4382	# SOWIE GEGEBENENFALLS DES MAKEFILES
4383	if [[ $do_compile = true ]]
4384	then
4385
4386	source_catalog=SOURCES_FOR_RUN_$fname
4387
4388	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4389	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4390	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4391	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4392	echo "export SOURCES_COMPLETE=true" >> $jobfile
4393	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4394
4395	for filename in $source_list
4396	do
4397	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4398	echo "cat > $filename << \"%END%\"" >> $jobfile
4399	cat $source_catalog/$filename >> $jobfile
4400	echo " " >> $jobfile
4401	echo "%END%" >> $jobfile
4402	echo " " >> $jobfile
4403	done
4404
4405	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4406	echo "cat > Makefile << \"%END%\"" >> $jobfile
4407	cat $source_catalog/Makefile >> $jobfile
4408	echo " " >> $jobfile
4409	echo "%END%" >> $jobfile
4410	echo " " >> $jobfile
4411
4412	echo "cd - > /dev/null" >> $jobfile
4413
4414	fi
4415
4416
4417	# ABSPEICHERN DER KONFIGURATIONSDATEI
4418	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4419	echo "cat > $config_file << \"%END%\"" >> $jobfile
4420	cat $config_file >> $jobfile
4421	echo "%END%" >> $jobfile
4422	echo " " >> $jobfile
4423
4424
4425	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4426	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4427	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4428	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4429	echo "%END%" >> $jobfile
4430	echo "chmod u+x $mrun_script_name" >> $jobfile
4431	echo "execute_mrun=true" >> $jobfile
4432	echo " " >> $jobfile
4433
4434	fi
4435
4436
4437	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4438	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4439	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4440	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4441	if [[ $do_remote = true ]]
4442	then
4443	(( i = 0 ))
4444	while (( i < iin ))
4445	do
4446	(( i = i + 1 ))
4447	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4448	if [[ "${transin[$i]}" = job ]]
4449	then
4450	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4451	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4452	echo " " >> $jobfile
4453	echo "%END%" >> $jobfile
4454	else
4455	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4456	fi
4457
4458	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4459	echo "if [[ \$? = 1 ]]" >> $jobfile
4460	echo "then" >> $jobfile
4461	echo " echo \" \" " >> $jobfile
4462	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4463	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4464	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4465	echo " execute_mrun=false" >> $jobfile
4466	echo "fi" >> $jobfile
4467	done
4468	fi
4469
4470	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4471	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4472	echo "LOCAL_PWD=$working_directory" >> $jobfile
4473	echo "export LOCAL_PWD" >> $jobfile
4474
4475	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4476	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4477	echo "export LOCAL_MRUN_PATH" >> $jobfile
4478
4479	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4480	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4481	then
4482	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4483	fi
4484
4485	# MRUN AUF ZIELRECHNER AUFRUFEN
4486	echo "set -x" >> $jobfile
4487	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4488
4489	echo 'ls -al; echo `pwd`' >> $jobfile
4490	echo "cd \$HOME" >> $jobfile
4491	echo "rm -rf $TEMPDIR" >> $jobfile
4492
4493
4494
4495
4496	# JOB PER SUBJOB STARTEN
4497	if [[ $silent = false ]]
4498	then
4499	printf "\n "
4500	else
4501	printf "\n\n"
4502	fi
4503
4504	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4505	rm -rf $jobfile
4506
4507
4508	fi # ENDE REMOTE-TEIL
4509
4510
4511
4512	# ENDE DER PROZEDUR

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |