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source: palm/trunk/SCRIPTS/mrun @ 437

Last change on this file since 437 was 437, checked in by raasch, 15 years ago
script adjustements for lcxt5m
Property svn:keywords set to `Id Rev`
File size: 168.4 KB

Rev	Line
[71]	1	#!/bin/ksh
[66]	2	# mrun - Plot-Shellskript
[169]	3	# $Id: mrun 437 2010-02-01 04:15:58Z raasch $
[1]	4
	5	# Prozedur zum Starten von Modellaeufen
	6
	7	# letzte Aenderung:
	8	# 03/03/94 - Siggi - Entwicklungsbeginn
	9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
	10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
	11	# zelne Variable exportiert. Dies ist noetig, weil an-
	12	# sonsten irgendein Speicher ueberlaeuft und von mrun
	13	# aufgerufene Programme (z.B. stageout) mit Fehlern
	14	# abbrechen (too many arguments)
	15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
	16	# defaultmaessig im RRZN-Profile eingeschaltet
	17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
	18	# wegfallen
	19	# 25/04/00 - Siggi - Version 1.5
	20	# remote_addres und remote_user in return_addres bzw.
	21	# return_username umbenannt, return_username wird dem
	22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
	23	# Neue Variable remote_username, die beim interaktiven
	24	# mrun-Aufruf zwingend ueber die neue Option -u oder
	25	# in der Konfigurationsdatei angegeben werden muss.
	26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
	27	# Version 1.7
	28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
	29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
	30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
	31	# zu bestimmen; Praeprozessoroptionen haben nun alle
	32	# die Form -Dtext=text, weil auf IBM sonst text durch
	33	# die leere Zeichenkette ersetzt wird
	34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
	35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
	36	# (-D$OMP=OMP) in order to avoid problems with
	37	# OMP_NUM_THREADS
	38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
	39	# tar files, one for each node used
	40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
	41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
	42	# 17/01/05 - Siggi - job for data transfer to local machine now within
	43	# job class c1 (HLRN)
	44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
	45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
	46	# base filename and cycle number
	47	# 16/02/05 - Gerald - hababai validated
	48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
	49	# 29/03/05 - Marcus - berni*-en0 validated
	50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
	51	# 24/04/05 - Siggi - netcdf support on lcmuk
	52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
	53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
	54	# number) can now be used within interactive runs
	55	# 12/05/05 - Siggi - netcdf support on ibm
	56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
	57	# 18/05/05 - Siggi - netcdf support on nec
	58	# 24/05/05 - Siggi - netcdf support on ibms
	59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
	60	# to 30 seconds
	61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
	62	# PATH is temporarily set)
	63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
	64	# caused warnings in the job protocol
	65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
	66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
	67	# removed
	68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
	69	# realized by file attribute trpe
	70	# 28/10/05 - Siggi - if existing, the file extension is output in case
	71	# of missing input file - no job abort in case of
	72	# missing input files with file extensions
	73	# (preliminary solution)
	74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
	75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
	76	# 07/12/05 - Siggi - gallego and elephanta admitted
	77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
	78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
	79	# 20/01/06 - Siggi - cpp directive for ibmy
	80	# 09/02/06 - Siggi - ibmy admitted for batch mode
	81	# 13/04/06 - Siggi - ostria admitted
	82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
	83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
	84	# optimization of OpenMP runs (option stacksize is
	85	# necessary for large gridpoint numbers because
	86	# otherwise a segmentation fault occurs)
	87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
	88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
	89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
	90	# 20/09/06 - Marcus - add DVRP library on nech
	91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
	92	# on local NAMELIST file ENVPAR
	93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
	94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
	95	# 06/02/07 - Siggi - add DVRP library on lcmuk
	96	# 07/02/07 - Siggi - revision of source code handling, source code is
	97	# now expected in directory given by source_path and
	98	# not in the current working directory, source code
	99	# files provided in add_source_path are allways
	100	# compiled, source code to be compiled is allways
	101	# sampled in SOURCES_FOR_RUN_$fname which is a
	102	# subdirectory of the current working directory,
[5]	103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
[1]	104	# adapted for RIAM (neck)
[5]	105	# bugfix for cycle number of output file (extout)
	106	# all hpmuk-related code removed
[14]	107	# 14/02/07 - Siggi - dvrp support for neck added
[21]	108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
[26]	109	# mrun_path replaced by PALM_BIN,
	110	# all machines are calling interpret_config.x
[66]	111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
	112	# output
[69]	113	# 16/03/07 - Siggi - adjustments for lctit
[78]	114	# 29/03/07 - Siggi - global revision transfered to batch job by new
	115	# option -G
[82]	116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
	117	# + netcdf/dvrp-options are read from configuration
	118	# file, host identifier (local_host) is read from
	119	# config file, code related to ftp filetransfer
	120	# removed (incl. option -f)
[97]	121	# 19/06/07 - Siggi - time limit for cdata jobs increased
[102]	122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
	123	# if new option -Y (coupling) is given,
	124	# output of executables to aout_output removed,
	125	# messages are immediately written to stdout instead
[108]	126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
	127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
	128	# variables out to the nodes in coupled mode -disabled-
	129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
[109]	130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
	131	# environment variables out to the nodes in coupled mode
[118]	132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
	133	# suggestions
[122]	134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
	135	# argument -g group_number, admit all sla* node_usage
	136	# queues
[129]	137	# 30/10/07 - Marcus - further adjustments for queues on lctit
[149]	138	# 14/02/08 - Bjoern - link of restart files with long file name possible
	139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
	140	# true, mrun tries "ln -f" on local output and resorts
	141	# to "cp" or "cp -r" on error
[164]	142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
	143	# which allows the user to choose his own job catalog
	144	# by setting job_catalog in the configuration file
	145	# (default is ~/job_queue),
[172]	146	# workaround for mpiexec with -env option,
[164]	147	# adjustments for lcxt4 (Bergen Center for Computational
	148	# Science)
[183]	149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
	150	# true, mrun tries "ln -f" on local input and resorts
	151	# to "cp" or "cp -r" on error
[180]	152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
[179]	153	# 14/07/08 - Siggi - adjustments for lcsgih
[188]	154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
[204]	155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
[210]	156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
	157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
	158	# argument
[211]	159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
	160	# file
	161	# 11/11/08 - Siggi - rules for using user code files changed: user
	162	# code splitted into one file per subroutine,
	163	# user can provide his/her own makefile, only
	164	# default source-code filenames are allowed
[215]	165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
[221]	166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
	167	# with environment variable mpilib
[223]	168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
	169	# using environment variable totalview
[246]	170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
	171	# interactive runs
[253]	172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
[260]	173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
	174	# dvr streaming server is automatically started using
	175	# new variable dvr_server and a configuration file
	176	# .dvrserver.config,
[261]	177	# processing of dvr output files using new script
	178	# process_dvr_output implemented, in order to make
	179	# dvr application more user friendly
[265]	180	# 20/03/09 - Marcus - update of n1ge command for lctit
[291]	181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
	182	# to be followed by a coupled atmosphere-ocean run
[343]	183	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
	184	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
[352]	185	# 08/07/09 - Siggi - default value for email_notification is none,
	186	# option -e added to subjob
[359]	187	# 19/08/09 - Marcus - MPI debug option
[362]	188	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
[367]	189	# 25/08/09 - BjornM - adpated for lck
[369]	190	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
[372]	191	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
[397]	192	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
	193	# switches on archiving, archiving on SGI-ICE enabled
[416]	194	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
	195	# adjustment for special1q
	196	# 18/12/09 - Carolin- modification of archiving (permq)
[437]	197	# 01/02/10 - Siggi - adjustments for lcxt5m
	198
	199
[1]	200
	201	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	202
	203	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	204	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	205	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	206
	207	AddFilenames=""
	208	additional_conditions=""
	209	add_source_path=""
	210	afname=""
	211	archive_save=true
	212	archive_system=none
	213	compiler_name=""
	214	cond1=""
	215	cond2=""
	216	config_file=.mrun.config
[206]	217	coupled_dist=""
	218	coupled_mode="mpi1"
[1]	219	cpp_opts=""
[82]	220	cpp_options=""
[1]	221	cpumax=0
	222	cpurest=0
	223	delete_temporary_catalog=true
	224	do_batch=false
	225	do_compile=true
	226	do_remote=false
	227	do_stagein=true
	228	do_stageout=true
	229	do_trace=false
[352]	230	email_notification="none"
[1]	231	exclude=""
	232	executable=""
	233	execution_error=false
[67]	234	fimm=false
[1]	235	fname=test
	236	fromhost=""
[78]	237	global_revision=""
[122]	238	group_number=none
[1]	239	host=""
	240	host_file=""
	241	hp=""
	242	ignore_archive_error=false
	243	input_list=""
	244	interpreted_config_file=""
[164]	245	job_catalog="~/job_queue"
[1]	246	job_on_file=""
	247	keep_data_from_previous_run=false
[183]	248	link_local_input=false
[149]	249	link_local_output=false
[1]	250	localhost_realname=$(hostname)
	251	local_compile=false
[260]	252	local_dvrserver_running=.FALSE.
[1]	253	locat=normal
	254	mainprog=""
	255	makefile=""
	256	mc=$0
	257	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	258	do
	259	mc=`echo $mc \| cut -f2- -d"/"`
	260	done
	261	module_files=""
	262	mrun_script_name=$mc
[82]	263	netcdf_inc=""
	264	netcdf_lib=""
[1]	265	netcdf_support=false
	266	node_usage=default
	267	numprocs=""
[206]	268	numprocs_atmos=0
	269	numprocs_ocean=0
[1]	270	OOPT=""
	271	openmp=false
	272	output_list=""
	273	package_list=""
	274	punkte="..........................................................."
	275	queue=none
	276	read_from_config=""
[5]	277	restart_run=false
[146]	278	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	279	if [[ $return_addres = 130.75.105.158 ]]
	280	then
	281	return_addres=172.20.25.41
	282	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
	283	fi
	284	return_password=""
	285	return_username=$LOGNAME
	286	remotecall=false
	287	remote_username=""
[102]	288	run_coupled_model=false
[1]	289	run_mode=""
	290	scirocco=false
[397]	291	store_on_archive_system=false
[1]	292	striche=" ----------------------------------------------------------------------------"
	293	silent=false
	294	source_list=""
	295	source_path=SOURCE
	296	tasks_per_node=""
	297	threads_per_task=1
	298	tmpcreate=false
	299	tmp_data_catalog=""
	300	transfer_problems=false
	301	usern=$LOGNAME
[377]	302	use_openmp=false
[1]	303	working_directory=`pwd`
	304	TOPT=""
	305	XOPT=""
	306	zeit=$( date \| cut -c 12-19 )
	307
	308	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	309	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	310
[66]	311	typeset -R30 calltime
[1]	312	typeset -L20 spalte1
	313	typeset -L40 spalte2
	314	typeset -L60 spalte3
	315	typeset -L35 string1=`date`
	316	typeset -L12 string2=$usern
	317	typeset -L12 string3=$localhost_realname
	318	typeset -L12 string4
	319	typeset -L12 string5
[201]	320	typeset -L30 version="MRUN 2.0 Rev$Rev: 437 $"
[1]	321
	322
	323
	324	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	325	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	326
	327	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	328	# EXPORTIERT WERDEN
	329	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	330	export group_number input_list memory numprocs output_list queue run_mode
[1]	331
	332
	333
	334	# FEHLERBEHANDLUNG
	335	# BEI EXIT:
[83]	336	trap 'rm -rf $working_directory/tmp_mrun
[69]	337	if [[ $locat != localhost ]]
[1]	338	then
[22]	339	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	340	# then
	341	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	342	#MRUN-calls on $localhost
	343	#
	344	#date and time user localhost remotehost termination mrun-command
	345	#--------------------------------------------------------------------------------------------------------------------
	346	#%STATEND%
	347	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	348	# fi
	349	#
	350	# # EINTRAG IN DIE STATISTIK-DATEI
	351	# string4=$host
	352	# string5=$locat
	353	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	354	# then
	355	# if [[ $do_batch = true ]]
	356	# then
	357	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	358	# else
	359	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	360	# fi
	361	# fi
[69]	362	echo " " > /dev/null
[1]	363	fi
	364
	365	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	366	then
	367
	368	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	369	(( i = 0 ))
	370	while (( i < iec ))
	371	do
	372	(( i = i + 1 ))
	373	printf "\n *** Execution of ERROR-command:\n"
	374	printf " >>> ${err_command[$i]}\n"
	375	eval ${err_command[$i]}
	376	done
	377	if [[ -n $interpreted_config_file ]] then
	378	rm -rf $interpreted_config_file
	379	fi
[71]	380	if [[ -n .mrun_environment ]] then
	381	rm -rf .mrun_environment
	382	fi
[1]	383	if [[ $tmpcreate = true ]]
	384	then
	385	printf "\n *** Contents of \"$TEMPDIR\":\n"
	386	ls -al; cd
	387	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	388	fi
[260]	389	if [[ "$dvrserver_id" != "" ]]
	390	then
	391	echo "+++ killing dvrserver_id=$dvrserver_id"
	392	kill $dvrserver_id
	393	fi
[1]	394	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	395	then
	396	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	397	fi
	398	printf "\n\n+++ MRUN killed \n\n"
	399	elif [[ $locat != control_c ]]
	400	then
	401	printf "\n\n --> all actions finished\n\n"
	402	printf " Bye, bye $usern !!\n\n"
	403	fi' exit
	404
	405
	406	# BEI TERMINAL-BREAK:
[83]	407	trap 'rm -rf $working_directory/tmp_mrun
[69]	408	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	409	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	410	then
	411	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	412	fi
[260]	413	if [[ "$dvrserver_id" != "" ]]
	414	then
	415	echo "+++ killing dvrserver_id=$dvrserver_id"
	416	kill $dvrserver_id
	417	fi
[1]	418	printf "\n+++ MRUN killed by \"^C\" \n\n"
	419	locat=control_c
	420	exit
	421	' 2
	422
	423
[22]	424	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	425	# BEEN SET
	426	if [[ "$PALM_BIN" = "" ]]
	427	then
	428	printf "\n +++ environment variable PALM_BIN has not been set"
	429	printf "\n please set it to the directory where the PALM scripts are located"
	430	locat=palm_bin; exit
	431	fi
[180]	432	export PATH=$PALM_BIN:$PATH
[22]	433
	434
[1]	435
	436	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	437	# FUER FOLGEJOBS BENOETIGT WIRD
[291]	438	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
[1]	439	do
	440	case $option in
	441	(a) afname=$OPTARG;;
[397]	442	(A) store_on_archive_system=true; mc="$mc -A";;
[1]	443	(b) do_batch=true; mc="$mc -b";;
	444	(B) delete_temporary_catalog=false; mc="$mc -B";;
	445	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	446	(C) restart_run=true; mc="$mc -C";;
[1]	447	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	448	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	449	(F) job_on_file="-D"; mc="$mc -F";;
[122]	450	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	451	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	452	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	453	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	454	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	455	(I) ignore_archive_error=true; mc="$mc -I";;
	456	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	457	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	458	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	459	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	460	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	461	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
	462	(O) use_openmp=true; mc="$mc -O";;
	463	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	464	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	465	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	466	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	467	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	468	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	469	(S) read_from_config=false; mc="$mc -S";;
	470	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
	471	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
	472	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	473	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	474	(v) silent=true; mc="$mc -v";;
	475	(x) do_trace=true;set -x; mc="$mc -x";;
	476	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	477	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	478	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[1]	479	(\?) printf "\n +++ unknown option $OPTARG \n"
	480	printf "\n --> type \"$0 ?\" for available options \n"
	481	locat=parameter;exit;;
	482	esac
	483	done
	484
	485
	486	# EVTL. POSITIONSPARAMETER EINLESEN
	487	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	488	shift OPTIND-1
	489
	490
	491	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	492	if [[ "$1" = "?" ]]
	493	then
	494	(printf "\n *** mrun can be called as follows:\n"
[291]	495	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
[1]	496	printf "\n Description of available options:\n"
	497	printf "\n Option Description Default-Value"
	498	printf "\n -a base name of input files equiv. -d"
[400]	499	printf "\n -A archiving when using file-attribute fl"
[1]	500	printf "\n -b batch-job on local machine ---"
	501	printf "\n -B do not delete temporary directory at end ---"
	502	printf "\n -c configuration file .mrun.config"
	503	printf "\n -d base name of files attached to program test"
	504	printf "\n -D preprocessor(cpp)-directives \"\" "
	505	printf "\n -F create remote job file only ---"
	506	printf "\n -h execution host $localhost_realname"
	507	printf "\n -i INPUT control list \"\" "
	508	printf "\n -I archiving errors of previous batch-jobs"
	509	printf "\n will be ignored"
	510	printf "\n -k keep data from previous run"
	511	printf "\n -K additional conditions for controling"
	512	printf "\n usage of conditional code and"
	513	printf "\n env-variables in configuration file \"\" "
	514	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	515	printf "\n -M Makefile name Makefile"
	516	printf "\n -n node usage (shared/not_shared) depending on -h"
	517	printf "\n -o OUTPUT control list \"\" "
	518	printf "\n -O use OpenMP ---"
	519	printf "\n -p software package list \"\" "
	520	printf "\n -q queue \"$queue\" "
	521	printf "\n -r run control list (combines -i -o) \"\" "
	522	printf "\n -s filenames of routines to be compiled \"\" "
	523	printf "\n must end with .f, .f90, .F, or .c !"
	524	printf "\n use \"..\" for more than one file and wildcards"
	525	printf "\n -s TEST compiles all files with w-permit"
	526	printf "\n -S config file interpreted by shellscript ---"
	527	printf "\n -t allowed cpu-time in seconds (batch) 0"
	528	printf "\n -T tasks per node depending on -h"
	529	printf "\n -u username on remote machine \"\" "
	530	printf "\n -v no prompt for confirmation ---"
	531	printf "\n -x tracing of mrun for debug purposes ---"
	532	printf "\n -X # of processors (on parallel machines) 1"
[291]	533	printf "\n -y add appendix \"_O\" to all local output"
	534	printf "\n files (ocean precursor runs followed by"
	535	printf "\n coupled atmosphere-ocean runs) ---"
[206]	536	printf "\n -Y run coupled model, \"#1 #2\" with"
	537	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[1]	538	printf "\n "
	539	printf "\n Possible values of positional parameter <modus>:"
	540	printf "\n \"?\" - this outline \n\n") \| more
	541	exit
	542	elif [[ "$1" != "" ]]
	543	then
	544	printf "\n +++ positional parameter $1 unknown \n"
	545	locat=parameter; exit
	546	fi
	547
	548
	549
	550	# KURZE STARTMELDUNG
	551	printf "\n*** $version "
	552	printf "\n will be executed. Please wait ..."
	553
	554
[82]	555
	556	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	557	if [[ ! -f $config_file ]]
	558	then
	559	printf "\n\n +++ configuration file: "
	560	printf "\n $config_file"
	561	printf "\n does not exist"
	562	locat=connect; exit
	563	fi
	564
	565
	566	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	567	line=""
	568	grep "%host_identifier" $config_file > tmp_mrun
	569	while read line
	570	do
[206]	571	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	572	then
	573	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	574	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	575	if [[ $localhost_realname = $HOSTNAME ]]
[82]	576	then
	577	localhost=$host_identifier
	578	break
	579	fi
	580	fi
	581	done < tmp_mrun
	582
	583	if [[ "$localhost" = "" ]]
	584	then
	585	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	586	printf "\n for local host \"$localhost_realname\"."
	587	printf "\n Please add line"
	588	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	589	printf "\n to the configuration file."
	590	locat=localhost; exit
	591	fi
	592
	593
	594	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	595	case $localhost_realname in
[397]	596	(r1\|r2\|h01\|b01) archive_system=tivoli;;
[82]	597	(cs*) archive_system=ut;;
	598	(fimm.bccs.uib.no) fimm=true;;
	599	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	600	(scirocco) scirocco=true;;
	601	esac
	602
	603
	604
[1]	605	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	606	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	607	[[ "$afname" = "" ]] && afname=$fname
	608
	609
	610	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	611	if [[ "$run_mode" != "" ]]
	612	then
	613	input_list="$input_list $run_mode"
	614	output_list="$output_list $run_mode"
	615	fi
	616
	617
	618	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	619	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	620	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	621	# STARTET)
	622	if [[ "$fromhost" = "" ]]
	623	then
	624	fromhost=$localhost
	625	fi
	626
	627
	628	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
	629	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
	630	then
	631	source_list=TEST
	632	local_compile=true
	633	host=$localhost
	634	fi
	635
	636
	637	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	638	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	639	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	640	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	641	if [[ -n $host && "$host" != $localhost ]]
	642	then
	643	do_batch=true
	644	do_remote=true
	645	case $host in
[437]	646	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lcxt5m\|lck) true;;
[1]	647	(*) printf "\n"
[83]	648	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	649	printf "\n is not available"
[1]	650	locat=nqs; (( iec = 0 )); exit;;
	651	esac
	652	else
	653	host=$localhost
	654	fi
	655
	656
	657	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	658	if [[ -n $additional_conditions ]]
	659	then
[69]	660	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	661	cond1=`echo $additional_conditions \| cut -d" " -f1`
	662	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	663	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	664	if [[ -n $dummy ]]
	665	then
	666	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	667	locat=options; exit
	668	fi
	669	fi
	670
	671
[206]	672	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	673	if [[ $run_coupled_model = true ]]
	674	then
	675
	676	if [[ -n $coupled_dist ]]
	677	then
	678
	679	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	680	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	681
	682	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	683	then
	684
	685	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	686	printf "\n PEs (total) : $numprocs"
	687	printf "\n PEs (atmosphere): $numprocs_atmos"
	688	printf "\n PEs (ocean) : $numprocs_ocean"
	689	locat=coupling; exit
	690
	691	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
	692	# THIS SHOULD BE REMOVED IN FUTURE
	693	elif (( $numprocs_ocean != $numprocs_atmos ))
	694	then
	695
	696	printf "\n +++ currently only 1:1 topologies are supported"
	697	printf "\n PEs (total) : $numprocs"
	698	printf "\n PEs (atmosphere): $numprocs_atmos"
	699	printf "\n PEs (ocean) : $numprocs_ocean"
	700	(( numprocs_atmos = $numprocs / 2 ))
	701	(( numprocs_ocean = $numprocs / 2 ))
	702	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
	703
	704	fi
	705
	706	else
	707
	708	(( numprocs_ocean = $numprocs / 2 ))
	709	(( numprocs_atmos = $numprocs / 2 ))
	710
	711	fi
	712	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	713
	714	# GET coupled_mode FROM THE CONFIG FILE
	715	line=""
	716	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	717	while read line
	718	do
	719	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
	720	then
	721	coupled_mode="mpi2"
	722	fi
	723	done < tmp_mrun
	724
	725	fi
	726
	727
[1]	728	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	729	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	730	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	731	then
	732	if [[ $ignore_archive_error = false ]]
	733	then
	734	printf "\n +++ data archiving of previous run failed"
	735	printf "\n see directory \~/job_queue on remote machine"
	736	locat=archive; exit
	737	else
	738	printf "\n +++ warning: data archiving in a previous run failed"
	739	printf "\n MRUN continues, trying to get backup copy"
	740	fi
	741	fi
	742
	743
	744
	745	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	746	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	747	if [[ "$read_from_config" = false ]]
	748	then
	749
	750	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	751	while read zeile
	752	do
	753	[[ $silent = false ]] && printf "."
	754
	755
	756	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	757	# ERSETZEN
	758	eval zeile=\"$zeile\"
	759
	760
	761	# INTERPRETATION DER ZEILE
[21]	762	if [[ "$(echo $zeile)" = "" ]]
[1]	763	then
[21]	764	# LEERZEILE, KEINE AKTION
	765	continue
[1]	766
[21]	767	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	768	then
	769
[1]	770	# ZEILE IST KOMMENTARZEILE
	771	true
	772
	773	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	774	then
	775
	776	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	777	zeile=$(echo $zeile \| cut -c2-)
[69]	778	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	779	var=`echo $zeile \| cut -d" " -f1`
	780	value=`echo $zeile \| cut -d" " -s -f2`
	781	for_host=`echo $zeile \| cut -d" " -s -f3`
	782	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	783	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	784
	785	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	786	then
	787
	788	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	789	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	790	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	791
	792
	793	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	794	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	795	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	796	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	797	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	798	# KONFIGURATIONSDATEI
	799	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	800	then
	801	eval $var=\$value
	802
	803	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	804	if [[ $do_trace = true ]]
	805	then
	806	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	807	fi
	808	fi
	809
	810	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	811	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	812	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	813	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	814	if [[ $var = host ]]
	815	then
	816	if [[ -n $host && "$host" != $localhost ]]
	817	then
	818	do_batch=true
	819	do_remote=true
	820	case $host in
[437]	821	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
[83]	822	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	823	printf "\n is not available"
[1]	824	locat=nqs; exit;;
	825	esac
	826	else
	827	host=$localhost
	828	fi
	829	fi
	830
	831	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	832	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	833	# DEN PROGRAMMEN BENOETIGT WERDEN
	834	export $var
	835	fi
	836
	837
	838
	839
	840	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	841	then
	842
	843	# ZEILE DEFINIERT ERROR-KOMMANDO
	844	(( iec = iec + 1 ))
	845	zeile=$(echo $zeile \| cut -c4-)
	846	err_command[$iec]="$zeile"
	847
	848	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	849	then
	850
	851	# ZEILE DEFINIERT INPUT-KOMMANDO
	852	(( iic = iic + 1 ))
	853	zeile=$(echo $zeile \| cut -c4-)
	854	in_command[$iic]="$zeile"
	855
	856	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	857	then
	858
	859	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	860	(( ioc = ioc + 1 ))
	861	zeile=$(echo $zeile \| cut -c4-)
	862	out_command[$ioc]="$zeile"
	863
	864	else
	865
	866	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	867	# s2a: in/out - Feld
	868	# s2b: loc - Feld (optional)
	869	# s2c: tr/ar - Feld (optional)
[69]	870	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	871	s1=`echo $zeile \| cut -d" " -f1`
	872	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	873	s2a=$(echo $s2 \| cut -d":" -f1)
	874	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	875	then
	876	s2b=""
	877	s2c=""
	878	else
[69]	879	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	880	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	881	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	882	fi
[69]	883	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	884	s3=`echo $zeile \| cut -d" " -f3`
	885	s4=`echo $zeile \| cut -d" " -s -f4`
	886	s5=`echo $zeile \| cut -d" " -s -f5`
	887	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	888
	889
	890	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	891	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	892	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	893	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	894	# HANDEN SEIN MUSS (D.H. s2b = loc)
	895	IFSALT="$IFS"; IFS="$IFS:"
	896	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	897	then
	898	found=false
	899	for actual in $input_list
	900	do
	901	for formal in $s3
	902	do
	903	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	904	done
	905	done
	906	if [[ $found = true ]]
	907	then
	908	(( iin = iin + 1 ))
	909	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	910	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	911	extin[$iin]=$s6
	912	fi
	913	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	914	then
	915	found=false
	916	for actual in $output_list
	917	do
	918	for formal in $s3
	919	do
	920	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	921	done
	922	done
	923	if [[ $found = true ]]
	924	then
	925	(( iout = iout + 1 ))
	926	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	927	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	928	fi
	929	elif [[ "$s2a" != in && "$s2a" != out ]]
	930	then
	931	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	932	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	933	locat=connect; exit
	934	fi
	935	IFS="$IFSALT"
	936	fi
	937	done < $config_file
	938
	939	else
	940
	941
	942	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	943	[[ $silent = false ]] && printf "..."
	944	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	945	export interpreted_config_file=.icf.$RANDOM
	946
	947
[69]	948
	949	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	950	# VERFUEGUNG STELLEN
	951	cat > .mrun_environment << %%END%%
	952	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	953	config_file = '$config_file', do_remote = '$do_remote',
	954	do_trace = '$do_trace', host = '$host',
	955	input_list = '$input_list', icf = '$interpreted_config_file',
	956	localhost = '$localhost', output_list = '$output_list' /
	957
	958	%%END%%
	959
	960	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	961	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	962	mrun_memory=$memory
[127]	963	mrun_group_number=$group_number
[69]	964	mrun_cpumax=$cpumax
	965	mrun_numprocs=$numprocs
	966
[251]	967	if [[ $localhost_realname = "sx-fep" ]]
[66]	968	then
[251]	969	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	970	else
	971	interpret_config.x
	972	fi
[71]	973	rm .mrun_environment
[1]	974
[71]	975
[1]	976	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	977	chmod u+x $interpreted_config_file
	978	export PATH=$PATH:.
	979	. $interpreted_config_file
[71]	980	rm $interpreted_config_file
[1]	981
[71]	982
[69]	983	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[71]	984	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	985	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[71]	986	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	987	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
[69]	988
[1]	989	fi
	990
	991
	992	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	993	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	994	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	995	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	996	if [[ "$SOURCES_COMPLETE" = "" ]]
	997	then
	998
	999	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	1000	# VEREINBART WURDE
	1001	source_path=""
	1002	line=""
	1003	grep "%source_path" $config_file > tmp_mrun
	1004	while read line
	1005	do
	1006	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1007	then
	1008	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	1009	then
	1010	global_source_path=`echo $line \| cut -d" " -f2`
	1011	fi
	1012	fi
	1013	done < tmp_mrun
	1014
	1015	line=""
	1016	found=false
	1017	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	1018	while read line
	1019	do
	1020	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1021	then
	1022	if [[ $found = true ]]
	1023	then
	1024	printf "\n\n +++ more than one source path found in configuration file"
	1025	printf "\n for local host \"$localhost\" "
	1026	locat=source_path; exit
	1027	fi
	1028	source_path=`echo $line \| cut -d" " -f2`
	1029	found=true
	1030	fi
	1031	done < tmp_mrun
	1032	rm tmp_mrun
	1033
	1034	if [[ "$source_path" = "" ]]
	1035	then
	1036	if [[ "$global_source_path" != "" ]]
	1037	then
	1038	source_path=$global_source_path
	1039	else
	1040	printf "\n\n +++ no source path found in configuration file"
	1041	printf "\n for local host \"$localhost\" "
	1042	locat=source_path; exit
	1043	fi
	1044	fi
	1045	eval source_path=$source_path
	1046
	1047	if [[ ! -d $source_path ]]
	1048	then
	1049	printf "\n\n +++ source path \"$source_path\" on local host"
	1050	printf "\n \"$localhost\" does not exist"
	1051	locat=source_path; exit
	1052	fi
	1053
	1054	fi
	1055
	1056
[78]	1057	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	1058	# DURCH OPTION -G MITGETEILT)
	1059	if [[ "$global_revision" = "" ]]
	1060	then
	1061	global_revision=`svnversion $source_path 2>/dev/null`
	1062	global_revision="Rev: $global_revision"
	1063	fi
[1]	1064
[78]	1065
[1]	1066	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1067	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1068	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1069	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1070	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1071	if [[ -n $host && "$host" != $localhost ]]
	1072	then
	1073	do_batch=true
	1074	do_remote=true
	1075	case $host in
[437]	1076	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
[1]	1077	(*) printf "\n"
[83]	1078	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1079	printf "\n is not available"
[1]	1080	locat=nqs; (( iec = 0 )); exit;;
	1081	esac
	1082	else
	1083	host=$localhost
	1084	fi
	1085
	1086
	1087	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1088	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1089	then
	1090
	1091	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1092	if [[ ! -n $numprocs ]]
	1093	then
	1094	printf "\n"
	1095	printf "\n +++ option \"-K parallel\" requires additional specification"
	1096	printf "\n of the number of processors to be used by"
	1097	printf "\n mrun-option \"-X\" or by environment-variable"
	1098	printf "\n \"numprocs\" in the configuration file"
	1099	locat=numprocs; (( iec = 0 )); exit
	1100	fi
	1101
	1102	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1103	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1104	# GESAMTPROZESSORANZAHL IST
[251]	1105	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
[1]	1106	then
	1107	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
	1108	(( ival = $tasks_per_node ))
	1109	(( pes = numprocs ))
	1110	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1111	# then
	1112	# (( pes = pes - 1 ))
	1113	# fi
	1114	(( ii = pes / ival ))
	1115	if (( pes - ii * ival > 0 ))
	1116	then
	1117	printf "\n"
	1118	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1119	printf "\n divisor of the total number of processors (option \"-X\")"
	1120	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1121	locat=tasks_per_node; (( iec = 0 )); exit
	1122	fi
	1123	fi
	1124
	1125	# IBMY HAT NUR EINEN KNOTEN
	1126	if [[ $host = ibmy ]]
	1127	then
	1128	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1129	then
	1130	printf "\n"
	1131	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1132	printf "\n total number of processors (option \"-X\")"
	1133	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1134	locat=tasks_per_node; (( iec = 0 )); exit
	1135	fi
	1136	fi
	1137
	1138	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
	1139	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
	1140	if [[ $use_openmp = true ]]
	1141	then
	1142	threads_per_task=$tasks_per_node
	1143	tasks_per_node=1
	1144	fi
[377]	1145
	1146	# SETTINGS FOR SUBJOB-COMMAND
	1147	if [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1148	then
	1149	(( tp1 = tasks_per_node * threads_per_task ))
	1150	TOPT="-T $tp1"
	1151	else
	1152	TOPT="-T $tasks_per_node"
	1153	fi
[1]	1154	OOPT="-O $threads_per_task"
	1155
	1156	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1157	if [[ "$tasks_per_node" != "" ]]
	1158	then
	1159	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1160	fi
	1161
	1162	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1163	# SETZEN
	1164	if [[ $node_usage = default ]]
	1165	then
	1166	if [[ $host = ibms ]]
	1167	then
	1168	node_usage=shared
[118]	1169	elif [[ $host = lctit ]]
	1170	then
[265]	1171	node_usage=RAM64GB
[181]	1172	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1173	then
	1174	node_usage=singlejob
[1]	1175	else
	1176	node_usage=not_shared
	1177	fi
	1178	fi
[181]	1179
[265]	1180	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
[1]	1181	then
	1182	printf "\n"
	1183	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1184	printf "\n \"shared\" or \"not_shared\""
	1185	locat=tasks_per_node; (( iec = 0 )); exit
	1186	fi
	1187
	1188	fi
	1189
	1190	# PRUEFEN, OB HOSTFILE EXISTIERT
	1191	if [[ -n $hostfile ]]
	1192	then
	1193	if [[ ! -f $hostfile ]]
	1194	then
	1195	printf "\n"
	1196	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1197	locat=hostfile; exit
	1198	fi
	1199	fi
	1200
	1201	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1202	if [[ $host = ibmy && $do_remote = false ]]
	1203	then
	1204	if [[ ! -f $HOME/.rhosts ]]
	1205	then
	1206	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1207	printf "\n\n *** file:"
	1208	printf "\n $HOME/.rhosts"
	1209	printf "\n was created\n"
	1210	fi
	1211	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1212	then
	1213	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1214	printf "\n\n *** file:"
	1215	printf "\n $HOME/.rhosts"
	1216	printf "\n was extended by the name of the current host\n"
	1217	fi
	1218	fi
	1219
	1220
	1221
	1222	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1223	if [[ $queue = none ]]
	1224	then
	1225	case $host in
	1226	(ibmb) if [[ $node_usage = shared ]]
	1227	then
	1228	queue=cshare
	1229	else
	1230	queue=csolo
	1231	fi;;
[312]	1232	(ibmh) queue=no_class;;
[1]	1233	(ibmy) queue=parallel;;
[191]	1234	(lcsgib) queue=bigq;;
	1235	(lcsgih) queue=bigq;;
[265]	1236	(lctit) queue=RAM64GB;;
[1]	1237	(nech) queue=none;;
[253]	1238	(necriam) queue=SP;;
[1]	1239	(unics) queue=unics;;
	1240	esac
	1241	fi
	1242
	1243
	1244	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1245	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1246	# ERMITTELN
	1247	(( i = 0 ))
	1248	while (( i < iin ))
	1249	do
	1250	(( i = i + 1 ))
	1251	(( maxcycle = 0 ))
	1252
	1253	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1254	if [[ "${actionin[$i]}" = di ]]
	1255	then
	1256	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1257	# REM-MASCHINE AUSWERTEN
	1258	eval filename=${pathin[$i]}/${endin[$i]}
	1259	else
	1260	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1261	# REM-MASCHINE AUSWERTEN
	1262	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1263	fi
	1264
	1265	# PRUEFEN AUF VORHANDENSEIN
	1266	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1267	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1268	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1269	then
	1270	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1271	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1272	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1273	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1274	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1275	if [[ "${transin[$i]}" != "locopt" ]]
	1276	then
	1277	printf "\n\n +++ INPUT-file: "
	1278	if [[ "${extin[$i]}" = "" ]]
	1279	then
	1280	printf "\n $filename"
	1281	else
	1282	printf "\n $filename.${extin[$i]}"
	1283	fi
	1284	printf "\n does not exist\n"
	1285	locat=input; exit
	1286	else
	1287	transin[$i]="unavailable"
	1288	fi
	1289	else
	1290
	1291	# ZYKLUSNUMMER FESTSTELLEN
	1292	ls -1 -d $filename > filelist 2>/dev/null
	1293	ls -1 -d $filename.* >> filelist 2>/dev/null
	1294	while read zeile
	1295	do
	1296	cycle=$(print $zeile \| cut -f2 -d".")
	1297	if [[ "$cycle" = "$zeile" ]]
	1298	then
	1299	(( icycle = 0 ))
	1300	elif [[ "$cycle" = "${extin[$i]}" ]]
	1301	then
	1302	(( icycle = 0 ))
	1303	else
	1304	(( icycle = $cycle ))
	1305	fi
	1306	if (( icycle > maxcycle ))
	1307	then
	1308	(( maxcycle = icycle ))
	1309	file_to_be_used=$zeile
	1310	fi
	1311	done <filelist
	1312	rm filelist
	1313
	1314	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1315	if (( maxcycle > 0 ))
	1316	then
	1317	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1318	then
	1319	filename=${filename}.$maxcycle.${extin[$i]}
	1320	else
	1321	filename=${filename}.$maxcycle
	1322	fi
	1323	else
	1324	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1325	then
	1326	filename=${filename}.${extin[$i]}
	1327	fi
	1328	fi
	1329
	1330	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1331	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1332	absnamein[$i]=$filename
	1333	if (( maxcycle > 0 ))
	1334	then
	1335	if [[ "${actionin[$i]}" = di ]]
	1336	then
	1337	frelin[$i]=${endin[$i]}.$maxcycle
	1338	else
	1339	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1340	fi
	1341	else
	1342	if [[ "${actionin[$i]}" = di ]]
	1343	then
	1344	frelin[$i]=${endin[$i]}
	1345	else
	1346	frelin[$i]=${afname}${endin[$i]}
	1347	fi
	1348	fi
	1349
	1350	fi
	1351	done
	1352
	1353
	1354	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1355	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1356	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1357	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1358	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1359	(( i = 0 ))
	1360	while (( i < iout ))
	1361	do
	1362	(( i = i + 1 ))
	1363	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1364	then
[260]	1365	if [[ "${actionout[$i]}" = tr ]]
[1]	1366	then
	1367	actionout[$i]=""
[260]	1368	elif [[ "${actionout[$i]}" = trpe ]]
	1369	then
	1370	actionout[$i]=pe
[1]	1371	elif [[ "${actionout[$i]}" = tra ]]
	1372	then
	1373	actionout[$i]=a
	1374	fi
	1375	(( maxcycle = 0 ))
	1376	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1377	eval catalogname=${pathout[$i]}
	1378	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1379	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1380	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1381	then
	1382
	1383	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1384	if cat /dev/null > $filename
	1385	then
	1386	rm $filename
	1387	else
	1388
	1389	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1390	if [[ ! -d $catalogname ]]
	1391	then
	1392	if mkdir -p $catalogname
	1393	then
	1394	printf "\n\n *** directory:"
	1395	printf "\n $catalogname"
	1396	printf "\n was created\n"
	1397	else
	1398	printf "\n\n +++ OUTPUT-file:"
	1399	printf "\n $filename"
	1400	printf "\n cannot be created, because directory does not exist"
	1401	printf "\n and cannot be created either"
	1402	printf "\n"
	1403	locat=output ; exit
	1404	fi 2>/dev/null
	1405	else
	1406	printf "\n\n +++ OUTPUT-file:"
	1407	printf "\n $filename"
	1408	printf "\n cannot be created, although directory exists"
	1409	printf "\n"
	1410	locat=output ; exit
	1411	fi
	1412	fi 2>/dev/null
	1413	else
	1414
	1415	# ZYKLUSNUMMER FESTSTELLEN
	1416	ls -1 -d $filename > filelist 2>/dev/null
	1417	ls -1 -d $filename.* >> filelist 2>/dev/null
	1418	while read zeile
	1419	do
	1420	cycle=$(print $zeile \| cut -f2 -d".")
	1421	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1422	then
	1423	(( icycle = 1 ))
	1424	else
	1425	(( icycle = $cycle + 1 ))
	1426	fi
	1427	if (( icycle > maxcycle ))
	1428	then
	1429	(( maxcycle = icycle ))
	1430	fi
	1431	done <filelist
	1432	rm filelist
	1433	fi
	1434
	1435	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1436	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1437	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1438	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1439	if [[ "${actionout[$i]}" != a ]]
	1440	then
	1441	if (( maxcycle > 0 ))
	1442	then
	1443	filename=${filename}.$maxcycle
	1444	if cat /dev/null > $filename
	1445	then
	1446	rm $filename
	1447	else
	1448	printf "\n +++ OUTPUT-file:"
	1449	printf "\n $filename"
	1450	printf "\n cannot be created"
	1451	locat=output ; exit
	1452	fi
	1453	fi
	1454	else
	1455	(( maxcycle = maxcycle - 1 ))
	1456	if (( maxcycle > 0 ))
	1457	then
	1458	filename=${filename}.$maxcycle
	1459	fi
	1460	fi
	1461
	1462	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1463	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1464	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1465	pathout[$i]=$filename
	1466	if (( maxcycle > 0 ))
	1467	then
	1468	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1469	else
	1470	frelout[$i]=${fname}${endout[$i]}
	1471	fi
	1472
	1473	fi
	1474	done
	1475
	1476
[260]	1477	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1478	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1479	then
[260]	1480	if [[ "$dvr_inc" = "" ]]
[83]	1481	then
[260]	1482	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1483	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1484	locat=dvr; exit
[83]	1485	fi
[260]	1486	if [[ "$dvr_lib" = "" ]]
[83]	1487	then
[260]	1488	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1489	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1490	locat=dvr; exit
[83]	1491	fi
	1492	fi
	1493
	1494
[1]	1495	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1496	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1497	# UEBERSETZT ZU WERDEN)
	1498	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1499	then
	1500	printf "\n +++ neither main program nor executable defined"
	1501	locat=source; exit
	1502	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1503	then
	1504	printf "\n +++ main program as well as executable defined"
	1505	locat=source; exit
	1506	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1507	then
	1508	do_compile=false
	1509	fi
	1510
	1511
[191]	1512	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1513	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1514	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1515	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1516	then
	1517	rm -rf SOURCES_FOR_RUN_$fname
	1518	mkdir SOURCES_FOR_RUN_$fname
	1519	fi
	1520
	1521
[1]	1522	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1523	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1524	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1525	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1526	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1527	then
	1528
[5]	1529	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
	1530	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
[1]	1531
	1532
	1533	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
	1534	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
	1535	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
	1536	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
	1537	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
	1538	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
	1539	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
	1540	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
	1541	# GESAMMELT
[5]	1542	if [[ "$source_list" = WRITE_PERMIT ]]
[1]	1543	then
	1544
	1545	source_list=""
	1546	cd $source_path
	1547
	1548
	1549	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
	1550	Names=$(ls -1 *.f90 2>&1)
	1551	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
	1552	Names=$(ls -1 *.F90 2>&1)
	1553	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
	1554	Names=$(ls -1 *.F 2>&1)
	1555	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
	1556	Names=$(ls -1 *.f 2>&1)
	1557	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
	1558	Names=$(ls -1 *.c 2>&1)
	1559	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
	1560
	1561
	1562	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
	1563	for dateiname in $Filenames
	1564	do
	1565	if [[ -w $dateiname ]]
	1566	then
	1567	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
	1568	then
	1569	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1570	source_list=$source_list"$dateiname "
	1571	fi
	1572	fi
	1573	done
	1574
	1575	cd - > /dev/null
	1576
	1577
[5]	1578	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
	1579	then
	1580
	1581	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1582	source_list=""
	1583	cd $source_path
	1584
	1585
	1586	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1587	if [[ ! -d .svn ]]
	1588	then
	1589	printf "\n\n +++ source directory"
	1590	printf "\n \"$source_path\" "
	1591	printf "\n is not under control of \"subversion\"."
[306]	1592	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1593	fi
	1594
	1595
	1596	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1597	Filenames=""
[69]	1598	svn status > tmp_mrun
	1599	while read line
[5]	1600	do
	1601	firstc=`echo $line \| cut -c1`
	1602	if [[ $firstc = M \|\| $firstc = "?" ]]
	1603	then
	1604	Name=`echo "$line" \| cut -c8-`
	1605	extension=`echo $Name \| cut -d. -f2`
	1606	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1607	then
	1608	Filenames="$Filenames "$Name
	1609	fi
	1610	fi
[69]	1611	done < tmp_mrun
[5]	1612
	1613
	1614	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1615	for dateiname in $Filenames
	1616	do
	1617	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1618	source_list=$source_list"$dateiname "
	1619	done
	1620
	1621	cd - > /dev/null
	1622
	1623
[1]	1624	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1625	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1626	# VORHANDEN
[5]	1627	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1628	then
	1629
	1630	cd $source_path
	1631
	1632	for filename in $source_list
	1633	do
	1634
	1635	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1636	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1637	then
	1638	printf "\n +++ source code file: $filename"
	1639	printf "\n must not contain (\"/\") "
	1640	locat=source; exit
	1641	fi
	1642
	1643	if [[ ! -f $filename ]]
	1644	then
	1645	printf "\n +++ source code file: $filename"
	1646	printf "\n does not exist"
	1647	locat=source; exit
	1648	else
	1649	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1650	fi
	1651
	1652	done
	1653
	1654	cd - > /dev/null
	1655
	1656	fi
	1657
	1658
	1659	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1660	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1661	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1662	if [[ $restart_run != true ]]
[1]	1663	then
	1664
	1665	if [[ ! -f "$source_path/$mainprog" ]]
	1666	then
	1667	printf "\n\n +++ main program: $mainprog"
	1668	printf "\n does not exist in source directory"
	1669	printf "\n \"$source_path\"\n"
	1670	locat=source; exit
	1671	else
	1672	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1673	then
	1674	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1675	source_list=${mainprog}" $source_list"
	1676	fi
	1677	fi
	1678	fi
	1679
	1680
[211]	1681	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1682	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1683	if [[ "$restart_run" != true ]]
	1684	then
	1685	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1686	if [[ ! -f $makefile ]]
	1687	then
	1688	printf "\n +++ file \"$makefile\" does not exist"
	1689	locat=make; exit
	1690	else
	1691	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1692	fi
	1693	fi
	1694
	1695
[1]	1696	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1697	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1698	then
	1699
	1700	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1701	if [[ ! -d $add_source_path ]]
	1702	then
	1703	printf "\n\n +++ WARNING: additional source code directory"
	1704	printf "\n \"$add_source_path\" "
	1705	printf "\n does not exist or is not a directory."
	1706	printf "\n No source code will be used from this directory!\n"
	1707	add_source_path=""
	1708	sleep 3
	1709	else
	1710
	1711	cd $add_source_path
[211]	1712	found=false
[1]	1713
	1714	Names=$(ls -1 *.f90 2>&1)
	1715	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1716	Names=$(ls -1 *.F90 2>&1)
	1717	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1718	Names=$(ls -1 *.F 2>&1)
	1719	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1720	Names=$(ls -1 *.f 2>&1)
	1721	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1722	Names=$(ls -1 *.c 2>&1)
	1723	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1724
	1725	cd - > /dev/null
	1726	cd SOURCES_FOR_RUN_$fname
	1727
[211]	1728	# COPY MAKEFILE IF EXISTING
	1729	if [[ -f $add_source_path/Makefile ]]
	1730	then
	1731	printf "\n\n *** user Makefile from directory"
	1732	printf "\n \"$add_source_path\" is used \n"
	1733	sleep 1
	1734	cp $add_source_path/Makefile .
	1735	fi
	1736
[1]	1737	for dateiname in $AddFilenames
	1738	do
	1739	if [[ -f $dateiname ]]
	1740	then
	1741	printf "\n +++ source code file \"$dateiname\" found in additional"
	1742	printf "\n source code directory \"$add_source_path\" "
[211]	1743	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1744	printf "\n from directory \"$source_path\"."
[1]	1745	locat=source; exit
	1746	fi
	1747
	1748	cp $add_source_path/$dateiname .
	1749	source_list="$source_list $dateiname"
	1750
[211]	1751	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1752	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1753	then
	1754	printf "\n\n +++ user file \"$dateiname\" "
	1755	printf "\n is not listed in Makefile \n"
	1756	locat=source; exit
	1757	else
	1758
[1]	1759	# Default User-Interface von der Liste entfernen, falls Datei
	1760	# ein User-Interface enthaelt
[211]	1761	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1762	# then
	1763	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1764	# then
	1765	# rm -rf user_interface.f90
	1766	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1767	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1768	# printf "\n since a user-interface is found in file"
	1769	# printf "\n \"$add_source_path/$dateiname\" \n"
	1770	# sleep 3
	1771	# else
	1772	if [[ $found = false ]]
[1]	1773	then
[211]	1774	found=true
	1775	printf "\n\n *** following user file(s) added to the"
	1776	printf " files to be translated:\n "
[1]	1777	fi
[211]	1778	printf "$dateiname "
	1779	sleep 0.5
[1]	1780	fi
	1781	done
[211]	1782	[[ $found = true ]] && printf "\n"
[1]	1783	cd - > /dev/null
	1784	fi
	1785	fi
	1786
	1787
	1788	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1789	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1790	if [[ $restart_run != true && -n $package_list ]]
[1]	1791	then
	1792
	1793	cd $source_path
	1794
	1795	for package in $package_list
	1796	do
	1797
	1798	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1799
	1800	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1801	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1802	# LIEFERT
	1803	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1804
	1805
	1806	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1807	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1808	for source_list_name in $package_source_list
	1809	do
	1810	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1811	then
	1812
	1813	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1814	ending=`echo $source_list_name \| cut -f2 -d.`
	1815	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1816	then
	1817	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1818	source_list="$source_list $source_list_name"
	1819	fi
	1820	fi
	1821	done
	1822	done
	1823
	1824	cd - > /dev/null
	1825	fi
	1826
	1827
	1828	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1829	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1830	# if [[ "$restart_run" != true ]]
	1831	# then
	1832	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1833	# if [[ ! -f $makefile ]]
	1834	# then
	1835	# printf "\n +++ file \"$makefile\" does not exist"
	1836	# locat=make; exit
	1837	# else
	1838	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1839	# fi
	1840	# fi
[1]	1841
	1842	fi # do_compile=true
	1843
	1844
	1845	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1846	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1847	if [[ $do_compile = true ]]
	1848	then
	1849
	1850	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1851	# ZUSAMMENSETZEN
[83]	1852	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1853	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1854	then
[82]	1855	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1856	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1857	then
[82]	1858	cpp_options="$cpp_options -D__nec"
	1859	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1860	then
	1861	cpp_options="$cpp_options -D__lc"
[1]	1862	else
[82]	1863	cpp_options="$cpp_options -D__$localhost"
[1]	1864	fi
[83]	1865
	1866	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1867	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1868	then
[82]	1869	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1870	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1871	else
[82]	1872	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1873	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1874	fi
[83]	1875
	1876	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1877	if [[ -n $package_list ]]
	1878	then
	1879	for package in $package_list
	1880	do
	1881	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1882	then
	1883	if [[ $package != "dvrp_graphics+1PE" ]]
	1884	then
[82]	1885	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1886	else
[82]	1887	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1888	export use_seperate_pe_for_dvrp_output=true
	1889	fi
	1890	else
	1891	if [[ $package != "dvrp_graphics+1PE" ]]
	1892	then
[82]	1893	cpp_options="$cpp_options -D__$package"
[1]	1894	else
[82]	1895	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1896	export use_seperate_pe_for_dvrp_output=true
	1897	fi
	1898	fi
	1899	done
	1900	fi
[83]	1901
	1902	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1903	if [[ -n $cpp_opts ]]
	1904	then
	1905	for popts in $cpp_opts
	1906	do
[82]	1907	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1908	then
	1909	cpp_options="${cpp_options},-D__$popts=__$popts"
	1910	else
	1911	cpp_options="$cpp_options -D__$popts"
	1912	fi
[1]	1913	done
	1914	fi
	1915
	1916	else
	1917
	1918
	1919	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1920	if [[ $do_remote = false ]]
	1921	then
	1922	if [[ ! -f $executable ]]
	1923	then
	1924	printf "\n +++ executable file: $executable"
	1925	printf "\n does not exist"
	1926	locat=executable; exit
	1927	fi
	1928	fi
	1929	fi
	1930
	1931
	1932	# JOBMODUS FESTSTELLEN
	1933	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
	1934	then
	1935	jobmo=BATCH
	1936	else
	1937	jobmo=INTERACTIVE
	1938	fi
	1939
	1940
	1941	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1942	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1943	if [[ "$compiler_name" = "" ]]
	1944	then
[82]	1945
[220]	1946	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1947	locat=compiler_name; exit
	1948
[1]	1949	fi
	1950
	1951
[251]	1952	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	1953	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	1954
	1955
	1956
	1957	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	1958	kennung=$RANDOM
	1959	if [[ "$tmp_user_catalog" = "" ]]
	1960	then
[312]	1961	if [[ $localhost = ibmh ]]
[1]	1962	then
[312]	1963	tmp_user_catalog=$SCRATCH
[1]	1964	elif [[ $localhost = nech ]]
	1965	then
	1966	tmp_user_catalog=$WRKSHR
	1967	else
	1968	tmp_user_catalog=/tmp
	1969	fi
	1970	fi
	1971	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	1972
	1973
	1974	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	1975	# BESTIMMEN
	1976	if [[ "$tmp_data_catalog" = "" ]]
	1977	then
[312]	1978	if [[ $localhost = ibmb ]]
[1]	1979	then
	1980	tmp_data_catalog=$WORK/mrun_restart_data
	1981	elif [[ $localhost = nech ]]
	1982	then
	1983	tmp_data_catalog=$WRKSHR/mrun_restart_data
	1984	else
	1985	tmp_data_catalog=/tmp/mrun_restart_data
	1986	fi
	1987	fi
	1988
	1989
	1990	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	1991	# ERSETZEN
	1992	if [[ $do_remote = false && $do_compile = true ]]
	1993	then
	1994	eval fopts=\"$fopts\"
	1995	eval lopts=\"$lopts\"
	1996	fi
	1997
	1998
	1999
	2000	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	2001	fopts="$fopts $netcdf_inc $dvr_inc"
	2002	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	2003	ROPTS="$ropts"
[437]	2004	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck ) && -n $numprocs ]]
[1]	2005	then
	2006	XOPT="-X $numprocs"
	2007	fi
	2008
	2009
	2010
	2011	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	2012	# GRAMM BENOETIGT
	2013	done=false
	2014	while [[ $done = false ]]
	2015	do
	2016	cputime=$cpumax
	2017	if (( $cputime == 0 ))
	2018	then
[246]	2019	if [[ $do_batch = true ]]
	2020	then
	2021	printf "\n +++ cpu-time is undefined"
	2022	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	2023	printf "\n >>> "
	2024	read cputime 1>/dev/null 2>&1
	2025	else
	2026	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	2027	fi
[1]	2028	else
	2029	done=true
	2030	fi
	2031	cpumax=$cputime
	2032	done
	2033
	2034	(( minuten = cputime / 60 ))
	2035	(( sekunden = cputime - minuten * 60 ))
	2036
	2037
	2038	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	2039	if [[ $do_batch = true ]]
	2040	then
	2041	done=false
	2042	while [[ $done = false ]]
	2043	do
	2044	if (( memory == 0 ))
	2045	then
	2046	printf "\n +++ memory demand is undefined"
	2047	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	2048	printf "\n >>> "
	2049	read memory 1>/dev/null 2>&1
	2050	else
	2051	done=true
	2052	fi
	2053	done
	2054	fi
	2055
	2056
	2057	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	2058	if [[ $do_remote = true && -z $remote_username ]]
	2059	then
	2060	while [[ -z $remote_username ]]
	2061	do
	2062	printf "\n +++ username on remote host \"$host\" is undefined"
	2063	printf "\n >>> Please type username:"
	2064	printf "\n >>> "
	2065	read remote_username
	2066	done
	2067	mc="$mc -u$remote_username"
	2068	fi
	2069
[221]	2070
	2071	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2072	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2073	then
	2074	[[ "$mpilib" = "" ]] && export mpilib=mpt
	2075	fi
	2076
	2077
	2078
[1]	2079	###########################################################################
	2080	# HEADER-AUSGABE
	2081	###########################################################################
	2082
	2083
	2084	calltime=$(date)
	2085	printf "\n"
	2086	# [[ $silent = false ]] && clear
	2087	printf "#--------------------------------------------------------------# \n"
	2088	printf "\| $version$calltime \| \n"
	2089	printf "\| \| \n"
	2090	spalte1="called on:"; spalte2=$localhost_realname
	2091	printf "\| $spalte1$spalte2 \| \n"
	2092	if [[ $local_compile = false ]]
	2093	then
	2094	if [[ $do_remote = true ]]
	2095	then
	2096	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2097	else
	2098	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2099	fi
	2100	else
	2101	spalte1="compiling test only!"; spalte2=""
	2102	fi
	2103	printf "\| $spalte1$spalte2 \| \n"
	2104	if [[ -n $numprocs ]]
	2105	then
	2106	spalte1="number of PEs:"; spalte2=$numprocs
	2107	printf "\| $spalte1$spalte2 \| \n"
	2108	fi
	2109	if [[ -n $tasks_per_node ]]
	2110	then
	2111	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	2112	printf "\| $spalte1$spalte2 \| \n"
	2113	fi
	2114	if [[ $threads_per_task != 1 ]]
	2115	then
	2116	spalte1="threads per task:"; spalte2="$threads_per_task"
	2117	printf "\| $spalte1$spalte2 \| \n"
	2118	fi
	2119	printf "\| \| \n"
	2120	if [[ $do_compile = true ]]
	2121	then
[82]	2122	spalte1=cpp-directives:; spalte2=$cpp_options
[1]	2123	printf "\| $spalte1$spalte2 \| \n"
[82]	2124	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2125	while [[ "$zeile" != "" ]]
	2126	do
	2127	spalte1=""
	2128	spalte2=$zeile
	2129	printf "\| $spalte1$spalte2 \| \n"
	2130	zeile=$(echo "$zeile" \| cut -c41-)
	2131	done
	2132
[82]	2133	spalte1=compiler-options:; spalte2="$fopts"
[1]	2134	printf "\| $spalte1$spalte2 \| \n"
[82]	2135	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2136	while [[ "$zeile" != "" ]]
	2137	do
	2138	spalte1=""
	2139	spalte2=$zeile
	2140	printf "\| $spalte1$spalte2 \| \n"
	2141	zeile=$(echo "$zeile" \| cut -c41-)
	2142	done
	2143
[82]	2144	spalte1=linker-options:; spalte2=$lopts
[1]	2145	printf "\| $spalte1$spalte2 \| \n"
[82]	2146	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2147	while [[ "$zeile" != "" ]]
	2148	do
	2149	spalte1=""
	2150	spalte2=$zeile
	2151	printf "\| $spalte1$spalte2 \| \n"
	2152	zeile=$(echo "$zeile" \| cut -c41-)
	2153	done
	2154
	2155	spalte1="main program":; spalte2=$mainprog
	2156	printf "\| $spalte1$spalte2 \| \n"
	2157	else
	2158	spalte1=executable:; spalte2=$executable
	2159	printf "\| $spalte1$spalte2 \| \n"
	2160	fi
	2161	printf "\| \| \n"
	2162	spalte1="base name of files":; spalte2=$fname
	2163	printf "\| $spalte1$spalte2 \| \n"
	2164	if [[ $fname != $afname ]]
	2165	then
	2166	spalte1="base name of input files":; spalte2=$afname
	2167	printf "\| $spalte1$spalte2 \| \n"
	2168	fi
	2169	spalte1="INPUT control list":; spalte2=$input_list
	2170	printf "\| $spalte1$spalte2 \| \n"
	2171	spalte1="OUTPUT control list":; spalte2=$output_list
	2172	printf "\| $spalte1$spalte2 \| \n"
	2173
	2174	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2175	then
	2176	spalte1="memory demand / PE":; spalte2="$memory MB"
	2177	printf "\| $spalte1$spalte2 \| \n"
	2178	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2179	printf "\| $spalte1$spalte2 \| \n"
	2180	fi
	2181
	2182	if [[ $do_compile = true ]]
	2183	then
	2184	printf "\| \| \n"
	2185	printf "\| Files to be compiled: \| \n"
	2186	zeile=$source_list
	2187	while [[ "$zeile" != "" ]]
	2188	do
	2189	spalte3=$zeile
	2190	printf "\| $spalte3 \| \n"
	2191	zeile=$(echo "$zeile" \| cut -c61-)
	2192	done
	2193	fi
	2194	printf "#--------------------------------------------------------------#"
	2195
	2196
	2197
	2198	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2199	if [[ $do_trace = true ]]
	2200	then
	2201	(( i = 0 ))
	2202	while (( i < iin ))
	2203	do
	2204	(( i = i + 1 ))
	2205	if (( i == 1 ))
	2206	then
	2207	printf "\n\n >>> INPUT-file assignments:\n"
	2208	fi
	2209	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2210	done
	2211	(( i = 0 ))
	2212	while (( i < iout ))
	2213	do
	2214	(( i = i + 1 ))
	2215	if (( i == 1 ))
	2216	then
	2217	printf "\n\n >>> OUTPUT-file assignments:\n"
	2218	fi
	2219	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2220	done
	2221	(( i = 0 ))
	2222	while (( i < iic ))
	2223	do
	2224	(( i = i + 1 ))
	2225	if (( i == 1 ))
	2226	then
	2227	printf "\n\n >>> INPUT-commands:\n"
	2228	fi
	2229	printf "\n ${in_command[$i]}"
	2230	done
	2231	(( i = 0 ))
	2232	while (( i < ioc ))
	2233	do
	2234	(( i = i + 1 ))
	2235	if (( i == 1 ))
	2236	then
	2237	printf "\n\n >>> OUTPUT-commands:\n"
	2238	fi
	2239	printf "\n ${out_command[$i]}"
	2240	done
	2241	fi
	2242
	2243
	2244	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2245	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2246	then
	2247	antwort=dummy
	2248	printf "\n\n"
	2249	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2250	do
	2251	printf " >>> everything o.k. (y/n) ? "
	2252	read antwort
	2253	done
	2254	if [[ $antwort = n \|\| $antwort = N ]]
	2255	then
	2256	locat=user_abort; (( iec = 0 )); exit
	2257	fi
	2258	if [[ $do_batch = true ]]
	2259	then
	2260	printf " >>> batch-job will be created and submitted"
	2261	else
	2262	if [[ $local_compile = false ]]
	2263	then
	2264	printf " >>> MRUN will now continue to execute on this machine"
	2265	else
	2266	printf " >>> a test compilation will now be carried out on this machine"
	2267	fi
	2268	fi
	2269	fi
	2270
	2271
	2272
	2273
	2274	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2275	# CHENDE AKTIONEN DURCHGEFUEHRT
	2276	if [[ $do_batch = false ]]
	2277	then
	2278
	2279
	2280	# TEMPORAEREN KATALOG ERZEUGEN
	2281	mkdir -p $TEMPDIR
	2282	chmod go+rx $TEMPDIR
	2283	tmpcreate=true
	2284
	2285
	2286	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2287	# TEMPORAERES VERZEICHNIS KOPIEREN
	2288	if [[ $do_compile = true ]]
	2289	then
	2290
	2291	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2292	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2293	if [[ $localhost = nech ]]
	2294	then
	2295	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2296	if mkdir -p $TEMPDIR_COMPILE
	2297	then
	2298	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2299	printf "\n is generated as temporary directory for cross compiling\n"
	2300	else
	2301	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2302	printf "\n needed for cross compilation failed"
	2303	locat=compile
	2304	exit
	2305	fi
	2306	else
	2307	TEMPDIR_COMPILE=$TEMPDIR
	2308	fi
	2309
	2310
[82]	2311	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2312	line=""
	2313	grep "%depository_path" $config_file > tmp_mrun
	2314	while read line
	2315	do
	2316	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2317	then
	2318	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2319	then
[82]	2320	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2321	fi
[82]	2322	fi
	2323	done < tmp_mrun
[1]	2324
[82]	2325	line=""
	2326	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2327	while read line
	2328	do
	2329	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2330	then
[211]	2331	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2332	then
	2333	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2334	fi
[1]	2335	fi
[82]	2336	done < tmp_mrun
[1]	2337
[82]	2338	if [[ "$local_depository_path" = "" ]]
	2339	then
	2340	if [[ "$global_depository_path" != "" ]]
[1]	2341	then
[82]	2342	local_depository_path=$global_depository_path
[1]	2343	else
[82]	2344	printf "\n\n +++ no depository path found in configuration file"
	2345	printf "\n for local host \"$localhost\" "
	2346	printf "\n please set \"\%depository_path\" in configuration file\n"
	2347	locat=config_file; exit
[1]	2348	fi
[82]	2349	fi
	2350	eval local_depository_path=$local_depository_path
[215]	2351	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2352	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2353
[215]	2354
[82]	2355	basename=`print $mainprog \| cut -f1 -d"."`
	2356	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2357	if [[ ! -f $make_depository ]]
	2358	then
	2359	printf "\n"
	2360	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2361	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2362	else
	2363	cp $make_depository $TEMPDIR_COMPILE
[1]	2364	cd $TEMPDIR_COMPILE
[82]	2365	tar -xf $make_depository > /dev/null 2>&1
[1]	2366	cd - > /dev/null
	2367	fi
[82]	2368
	2369	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2370
	2371	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
	2372	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
	2373	# MAKEFILE EINTRAGEN
[211]	2374	# cd $TEMPDIR_COMPILE
	2375	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
	2376	# if [[ "$interface_file" != "" ]]
	2377	# then
	2378	# interface_file=`echo $interface_file \| cut -d"." -f1`
	2379	# mv Makefile Makefile_old
	2380	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
	2381	# fi
	2382	# cd - > /dev/null
[1]	2383	else
	2384	cp $executable ${TEMPDIR}/a.out
	2385	fi
	2386
	2387
	2388	# WECHSEL IN TEMPORAEREN KATALOG
	2389	cd $TEMPDIR
	2390	printf "\n *** changed to temporary directory: $TEMPDIR"
	2391
	2392
	2393	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2394	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2395	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2396	# ERMITTELN
	2397	(( i = 0 ))
	2398	while (( i < iout ))
	2399	do
	2400	(( i = i + 1 ))
	2401	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2402	then
	2403	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2404	else
	2405	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2406	fi
	2407	done
	2408
	2409
	2410	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2411	if [[ $do_compile = true ]]
	2412	then
	2413
	2414
	2415	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2416	printf "\n\n\n *** compilation starts \n$striche\n"
	2417	printf " *** compilation with make using following options:\n"
[211]	2418	printf " make depository: $make_depository"
[82]	2419	printf " compilername: $compiler_name\n"
	2420	printf " options: $fopts\n"
	2421	printf " preprocessor-directives: $cpp_options \n"
	2422	printf " linker-options: $lopts \n"
	2423	printf " source code files: $source_list \n"
	2424
	2425	if [[ $localhost = nech ]]
[1]	2426	then
[82]	2427	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2428	cp $TEMPDIR_COMPILE/a.out .
	2429	[[ $? != 0 ]] && compile_error=true
	2430	rm -rf $TEMPDIR_COMPILE
[312]	2431	elif [[ $localhost = ibmh ]]
	2432	then
[325]	2433	printf " compiler is called via ssh on \"plogin1\" \n"
	2434	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[312]	2435	[[ ! -f a.out ]] && compile_error=true
	2436	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[197]	2437	elif [[ $localhost = lcsgib ]]
	2438	then
[221]	2439	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
[372]	2440	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2441	[[ ! -f a.out ]] && compile_error=true
	2442	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2443	elif [[ $localhost = lcsgih ]]
	2444	then
[221]	2445	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
[366]	2446	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2447	[[ ! -f a.out ]] && compile_error=true
	2448	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2449	else
[118]	2450	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
[82]	2451	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	2452	fi
[1]	2453
	2454	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2455	then
	2456	printf "\n +++ error occured while compiling or linking"
	2457	locat=compile
[181]	2458
[182]	2459	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2460	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2461	# then
[181]	2462	exit
[197]	2463	# else
	2464	# locat=normal
	2465	# fi
[1]	2466	else
	2467	printf "$striche\n *** compilation finished \n"
	2468	fi
	2469	fi
	2470
	2471
	2472	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2473	if [[ $local_compile = true ]]
	2474	then
	2475	cd $HOME
	2476	rm -rf $TEMPDIR
	2477	locat=local_compile; exit
	2478	fi
	2479
	2480
	2481	# BEREITSTELLEN DER INPUT-DATEIEN
	2482	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2483	(( i = 0 ))
	2484	while (( i < iin ))
	2485	do
	2486	(( i = i + 1 ))
	2487	if (( i == 1 ))
	2488	then
	2489	printf "\n\n *** providing INPUT-files:\n$striche"
	2490	fi
	2491
	2492
	2493	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2494	if [[ "${transin[$i]}" = unavailable ]]
	2495	then
	2496	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2497	then
	2498	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2499	printf "\n is not available!"
	2500	else
	2501	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2502	printf "\n is not available!"
	2503	fi
	2504	continue
	2505	fi
	2506
	2507	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2508	files_for_pes=false; datentyp=file
	2509	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2510	then
	2511	files_for_pes=true; datentyp=directory
	2512	actionin[$i]=""
	2513	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2514	then
	2515	actionin[$i]=""
	2516	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2517	then
	2518	files_for_pes=true; datentyp=directory
	2519	actionin[$i]="ar"
	2520	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2521	then
	2522	actionin[$i]="ar"
	2523	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2524	then
	2525	files_for_pes=true; datentyp=directory
	2526	actionin[$i]="fl"
	2527	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2528	then
	2529	actionin[$i]="fl"
	2530	fi
	2531
	2532	if [[ $files_for_pes = true ]]
	2533	then
	2534	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2535	else
	2536	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2537	fi
	2538
	2539	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2540	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2541	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2542	# SERVER ZU HOLEN
	2543	if [[ "${actionin[$i]}" = fl ]]
	2544	then
	2545	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2546	if [[ $files_for_pes = false ]]
	2547	then
	2548	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2549	then
	2550	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2551	got_tmp[$i]=true
	2552	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2553	then
	2554	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2555	printf "\n *** trying to use backup copy in \"$WORK\" "
	2556	cp $WORK/${frelin[$i]} ${localin[$i]}
	2557	else
	2558	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2559	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2560	printf "\n *** trying to get copy from archive"
	2561	actionin[$i]=ar
	2562	fi
	2563	else
	2564	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2565	then
	2566	mkdir ${localin[$i]}
[149]	2567	cd $tmp_data_catalog/${frelin[$i]}
	2568	for file in $(ls *)
	2569	do
	2570	ln $file $TEMPDIR/${localin[$i]}
	2571	done
	2572	cd $TEMPDIR
[1]	2573	got_tmp[$i]=true
	2574	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2575	then
	2576	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2577	printf "\n *** trying to use backup copy in \"$WORK\" "
	2578	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2579	else
	2580	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2581	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2582	printf "\n *** trying to get copy from archive"
	2583	actionin[$i]=ar
	2584	fi
	2585	fi
	2586	fi
	2587
	2588
	2589	# DATEI LIEGT AUF ARCHIV-SERVER
	2590	if [[ "${actionin[$i]}" = ar ]]
	2591	then
	2592
	2593	if [[ $files_for_pes = false ]]
	2594	then
	2595	printf "\n file will be restored from archive-system ($archive_system)!"
	2596	else
	2597	printf "\n directory will be restored from archive-system ($archive_system)!"
	2598	fi
	2599
	2600	file_restored=false
	2601
	2602	if [[ $archive_system = asterix ]]
	2603	then
	2604	do_stagein=true
	2605	(( stagein_anz = 0 ))
	2606	while [[ $do_stagein = true ]]
	2607	do
	2608	if [[ $files_for_pes = false ]]
	2609	then
	2610	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2611	else
	2612	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2613	fi
	2614	cat STAGEIN_OUTPUT
	2615	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2616	then
	2617	file_restored=true
	2618	do_stagein=false
	2619	else
	2620	(( stagein_anz = stagein_anz + 1 ))
	2621	if (( stagein_anz == 10 ))
	2622	then
	2623	printf "\n +++ stagein stoped after 10 tries"
	2624	locat=stage
	2625	exit
	2626	fi
	2627	printf "\n +++ restoring from archive failed, trying again:"
	2628	sleep 900
	2629	fi
	2630	done
	2631	elif [[ $archive_system = DMF ]]
	2632	then
	2633	if [[ $files_for_pes = false ]]
	2634	then
	2635	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	2636	locat=DMF
	2637	exit
	2638	else
	2639	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	2640	cp -r $ARCHIVE/${frelin[$i]} $PWD
	2641	file_restored=true
	2642	fi
	2643	elif [[ $archive_system = tivoli ]]
	2644	then
	2645	if [[ $files_for_pes = false ]]
	2646	then
[399]	2647	if [[ $localhost = lcsgih ]]
[1]	2648	then
[399]	2649	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2650	else
[399]	2651	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2652	fi
	2653	else
	2654	(( inode = 0 ))
	2655	while (( inode < nodes ))
	2656	do
[399]	2657	if [[ $localhost = lcsgih ]]
[1]	2658	then
[399]	2659	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2660	else
[399]	2661	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2662	fi
	2663	(( inode = inode + 1 ))
	2664	done
	2665	fi
	2666	file_restored=true
	2667	elif [[ $archive_system = ut ]]
	2668	then
	2669	if [[ $files_for_pes = false ]]
	2670	then
	2671	cp $UT/${frelin[$i]} .
	2672	else
	2673	(( inode = 0 ))
	2674	while (( inode < nodes ))
	2675	do
	2676	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	2677	(( inode = inode + 1 ))
	2678	done
	2679	fi
	2680	file_restored=true
	2681	else
	2682	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	2683	locat=rearchive
	2684	exit
	2685	fi
	2686
	2687	if [[ $file_restored = true ]]
	2688	then
	2689
	2690	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	2691	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	2692	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	2693	if [[ $files_for_pes = false ]]
	2694	then
	2695	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	2696	else
	2697	mkdir $tmp_data_catalog/${frelin[$i]}
	2698	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	2699	fi
	2700	got_tmp[$i]=true
	2701
	2702	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	2703	mv ${frelin[$i]} ${localin[$i]}
	2704
	2705	fi
	2706	fi
	2707
	2708
	2709	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	2710	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	2711	then
	2712
	2713	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	2714	then
	2715
	2716	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	2717	printf "\n file will be provided for $numprocs processors"
	2718	mkdir ${localin[$i]}
	2719	ival=$numprocs
	2720	(( ii = 0 ))
	2721	while (( ii <= ival-1 ))
	2722	do
	2723	if (( ii < 10 ))
	2724	then
	2725	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	2726	elif (( ii < 100 ))
	2727	then
	2728	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	2729	elif (( ii < 1000 ))
	2730	then
	2731	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	2732	else
	2733	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	2734	fi
	2735	(( ii = ii + 1 ))
	2736	done
	2737
	2738	else
	2739
	2740	if [[ $files_for_pes = true ]]
	2741	then
	2742
	2743	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	2744	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	2745	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	2746	# PER MOVE UMBENANNT WERDEN
	2747	printf "\n providing $numprocs files for the respective processors"
	2748	mkdir ${localin[$i]}
[183]	2749	if [[ $link_local_input = true ]]
	2750	then
	2751	printf " using ln -f\n"
	2752	cd ${absnamein[$i]}
	2753	for file in $(ls *)
	2754	do
	2755	ln -f $file ${localin[$i]}
	2756	done
	2757	cd $TEMPDIR
	2758	fi
	2759	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	2760	if [[ ! -f "${localin[$i]}/_0000" ]]
	2761	then
	2762	if [[ $link_local_input = true ]]
	2763	then
	2764	printf " ln failed for .../_0000, using cp...\n"
	2765	fi
	2766	cp -r ${absnamein[$i]}/* ${localin[$i]}
	2767	fi
[1]	2768
	2769	else
	2770	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	2771	if [[ $link_local_input = true ]]
	2772	then
	2773	printf " using ln -f\n"
	2774	ln -f ${absnamein[$i]} ${localin[$i]}
	2775	fi
	2776	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	2777	if [[ ! -f "${localin[$i]}" ]]
	2778	then
	2779	if [[ $link_local_input = true ]]
	2780	then
	2781	printf " ln failed, using cp...\n"
	2782	fi
	2783	cp ${absnamein[$i]} ${localin[$i]}
	2784	fi
[1]	2785	fi
	2786	fi
	2787	fi
	2788
	2789	done
	2790	if (( i != 0 ))
	2791	then
	2792	printf "\n$striche\n *** all INPUT-files provided \n"
	2793	fi
	2794
	2795
	2796	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	2797	(( i = 0 ))
	2798	while (( i < iic ))
	2799	do
	2800	(( i = i + 1 ))
	2801	if (( i == 1 ))
	2802	then
	2803	printf "\n\n *** execution of INPUT-commands:\n$striche"
	2804	fi
	2805	printf "\n >>> ${in_command[$i]}"
	2806	eval ${in_command[$i]}
	2807	if (( i == iic ))
	2808	then
	2809	printf "\n$striche\n"
	2810	fi
	2811	done
	2812
	2813
	2814	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	2815	cpurest=${cpumax}.
	2816
	2817
[260]	2818	# START DVR STREAMING SERVER
	2819	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	2820	then
	2821	if [[ "$dvr_server" != "" ]]
	2822	then
	2823
	2824	printf "\n\n *** preparing the dvr streaming server configuration file"
	2825
	2826	# Check, if a dvr server is already running
	2827	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	2828	if [[ "$running_dvrserver_id" != "" ]]
	2829	then
	2830
[261]	2831	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	2832	printf "\n This server is used instead starting a new one!"
[261]	2833	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	2834
	2835	else
	2836
	2837	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	2838	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	2839	then
	2840	cp ${PALM_BIN}/.dvrserver.config .
	2841
	2842	# Entering the BASEDIR, UID and GID into this file
	2843	user_id=`id -u`
	2844	group_id=`id -g`
	2845	# & is needed as seperator, because TEMPDIR contains /
	2846	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	2847	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	2848	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	2849	mv .dvrserver.3 .dvrserver.config
	2850	rm .dvrserver.1 .dvrserver.2
	2851
	2852	# Start dvr server in background, get his id and print on terminal
	2853	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	2854	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	2855	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	2856	local_dvrserver_running=.TRUE.
	2857	else
	2858	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	2859	printf "\n \"$PALM_BIN\" "
	2860	locat=dvr
	2861	exit
	2862	fi
	2863
	2864	fi
	2865
	2866	else
	2867	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	2868	fi
	2869	fi
	2870
	2871
	2872	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	2873	# LESEN VON PALM)
	2874	cat > ENVPAR << %%END%%
	2875	&envpar run_identifier = '$fname', host = '$localhost',
	2876	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2877	maximum_cpu_time_allowed = ${cpumax}.,
	2878	revision = '$global_revision',
	2879	local_dvrserver_running = $local_dvrserver_running /
	2880
	2881	%%END%%
	2882
	2883
[1]	2884	# PROGRAMMSTART
	2885	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	2886	PATH=$PATH:$TEMPDIR
	2887
[359]	2888	# MPI debug option (argument checking, slows down execution due to increased latency)
	2889	if [[ "$mpi_debug" = true ]]
	2890	then
	2891	export MPI_CHECK_ARGS=1
	2892	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	2893	fi
	2894
[1]	2895	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	2896	then
	2897	if [[ "$ENVIRONMENT" = BATCH ]]
	2898	then
[211]	2899	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	2900	then
	2901	printf "\n +++ debug is allowed in interactive mode only"
	2902	locat=debug
	2903	exit
	2904	fi
[1]	2905	fi
[5]	2906	if [[ $localhost = decalpha ]]
[1]	2907	then
	2908	dxladebug a.out
	2909	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	2910	then
	2911
	2912	# SETUP THE IBM MPI ENVIRONMENT
	2913	export MP_SHARED_MEMORY=yes
	2914	export AIXTHREADS_SCOPE=S
	2915	export OMP_NUM_THREADS=$threads_per_task
	2916	export AUTHSTATE=files
	2917	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2918
	2919	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	2920	export MP_ADAPTER_USE=shared
	2921	export MP_CPU_USE=multiple
	2922	export MP_TIMEOUT=1200
	2923
	2924	unset MP_TASK_AFFINITY
	2925
	2926	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	2927	#(( ii = 1 ))
	2928	#while (( ii <= $numprocs ))
	2929	#do
	2930	# echo $localhost_realname >> hostfile
	2931	# (( ii = ii + 1 ))
	2932	#done
	2933	#export MP_HOSTFILE=hostfile
	2934
	2935	if [[ "$LOADLBATCH" = yes ]]
	2936	then
	2937	totalview poe a.out $ROPTS
	2938	else
	2939	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2940	export TVDSVRLAUNCHCMD=ssh
	2941	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2942	fi
[211]	2943	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	2944	then
	2945	# CURRENTLY NO DEBUGGER ON LCSGI
	2946	if [[ $run_coupled_model = true ]]
	2947	then
	2948	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	2949	locat=debug
	2950	exit
[223]	2951	else
	2952	echo "no_coupling" > runfile_atmos
[211]	2953	fi
	2954	(( ii = $numprocs / $threads_per_task ))
	2955	export OMP_NUM_THREADS=$threads_per_task
	2956	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	2957	if [[ $threads_per_task != 1 ]]
	2958	then
	2959	printf "\n threads per task: $threads_per_task"
	2960	fi
	2961	printf "\n\n"
[223]	2962	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	2963	then
	2964	# export MPI_LAUNCH_TIMEOUT=360
	2965	if [[ "$totalview" = true ]]
	2966	then
	2967	printf "\n running totalview debugger"
	2968	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
	2969	else
	2970	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	2971	fi
	2972	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	2973	then
	2974	# ulimit -s 300000 # A too large stack size causes problems
	2975	# export MV2_NUM_PORTS=2
	2976	# export MV2_CPU_MAPPING=0:1:2:3
[362]	2977	if [[ "$totalview" = true ]]
	2978	then
	2979	printf "\n running totalview debugger"
	2980	mpiexec -tv ./a.out $ROPTS < runfile_atmos
	2981	else
	2982	mpiexec ./a.out $ROPTS < runfile_atmos
	2983	fi
[223]	2984	fi
[1]	2985	else
	2986	printf "\n +++ no debug available on \"$localhost\" "
	2987	printf "\n or not implemented in mrun so far"
	2988	locat=debug
	2989	exit
	2990	fi
	2991	else
	2992	if [[ -n $numprocs ]]
	2993	then
	2994	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	2995	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	2996	then
	2997	# SETUP THE IBM MPI ENVIRONMENT
[312]	2998	if [[ $host != ibmh ]]
	2999	then
	3000	export MP_SHARED_MEMORY=yes
	3001	export AIXTHREAD_SCOPE=S
	3002	export OMP_NUM_THREADS=$threads_per_task
	3003	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	3004	export AUTHSTATE=files
	3005	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3006	# export MP_PRINTENV=yes
[1]	3007
[312]	3008	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	3009	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	3010	export MP_WAIT_MODE=poll
	3011	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	3012	fi
[1]	3013	if [[ "$LOADLBATCH" = yes ]]
	3014	then
	3015	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	3016	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3017	then
[102]	3018	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3019	else
[343]	3020	if [[ $run_coupled_model = false ]]
	3021	then
	3022	if [[ "$ocean_file_appendix" = true ]]
	3023	then
	3024	echo "precursor_ocean" > runfile_atmos
	3025	else
	3026	echo "precursor_atmos" > runfile_atmos
	3027	fi
	3028	else
	3029	(( iia = $numprocs_atmos / $threads_per_task ))
	3030	(( iio = $numprocs_ocean / $threads_per_task ))
	3031	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3032	printf "\n using $coupled_mode coupling"
	3033	printf "\n\n"
	3034	echo "coupled_run $iia $iio" > runfile_atmos
	3035	fi
	3036	poe ./a.out $ROPTS < runfile_atmos
[1]	3037	fi
	3038	else
	3039	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
	3040	then
[102]	3041	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[1]	3042	elif [[ $localhost = ibmy ]]
	3043	then
	3044	if [[ -f $hostfile ]]
	3045	then
	3046	cp $hostfile hostfile
	3047	else
	3048	(( ii = 1 ))
	3049	while (( ii <= $numprocs ))
	3050	do
	3051	echo $localhost_realname >> hostfile
	3052	(( ii = ii + 1 ))
	3053	done
	3054	fi
	3055	export MP_HOSTFILE=hostfile
[331]	3056	if [[ $run_coupled_model = false ]]
	3057	then
	3058	if [[ "$ocean_file_appendix" = true ]]
	3059	then
	3060	echo "precursor_ocean" > runfile_atmos
	3061	else
	3062	echo "precursor_atmos" > runfile_atmos
	3063	fi
	3064	else
	3065	(( iia = $numprocs_atmos / $threads_per_task ))
	3066	(( iio = $numprocs_ocean / $threads_per_task ))
	3067	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3068	printf "\n using $coupled_mode coupling"
	3069	printf "\n\n"
	3070	echo "coupled_run $iia $iio" > runfile_atmos
	3071	fi
	3072	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3073
[1]	3074	else
	3075	if [[ "$host_file" = "" ]]
	3076	then
	3077	printf "\n +++ no hostfile given in configuration file"
	3078	locat=config_file
	3079	exit
	3080	else
	3081	eval host_file=$host_file
	3082	fi
	3083	export MP_HOSTFILE=$host_file
[102]	3084	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3085	fi
	3086	fi
[251]	3087	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3088	then
	3089	(( ii = nodes ))
	3090	if [[ $ii = 1 ]]
	3091	then
	3092	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3093	export MPIPROGINF=YES
[61]	3094	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3095	echo "*** execution on single node with mpirun"
[102]	3096	mpirun -np $numprocs ./a.out $ROPTS
[1]	3097	else
	3098	(( i = 0 ))
	3099	while (( i < ii ))
	3100	do
	3101	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3102	(( i = i + 1 ))
	3103	done
	3104
	3105	echo "#!/bin/sh" > mpi_exec_shell
	3106	echo " " >> mpi_exec_shell
	3107	echo "set -u" >> mpi_exec_shell
	3108	echo "F_ERRCNT=0" >> mpi_exec_shell
	3109	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3110	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3111	echo "cpurest=$cpurest" >> mpi_exec_shell
	3112	echo "fname=$fname" >> mpi_exec_shell
	3113	echo "localhost=$localhost" >> mpi_exec_shell
	3114	echo "return_addres=$return_addres" >> mpi_exec_shell
	3115	echo "return_username=$return_username" >> mpi_exec_shell
	3116	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3117	echo "write_binary=$write_binary" >> mpi_exec_shell
	3118	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3119	echo " " >> mpi_exec_shell
	3120	echo "export F_ERRCNT" >> mpi_exec_shell
	3121	echo "export MPIPROGINV" >> mpi_exec_shell
	3122	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3123	echo "export cpurest" >> mpi_exec_shell
	3124	echo "export fname" >> mpi_exec_shell
	3125	echo "export localhost" >> mpi_exec_shell
	3126	echo "export return_addres" >> mpi_exec_shell
	3127	echo "export return_username" >> mpi_exec_shell
	3128	echo "export tasks_per_node" >> mpi_exec_shell
	3129	echo "export write_binary" >> mpi_exec_shell
	3130	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3131	echo " " >> mpi_exec_shell
[102]	3132	echo "exec ./a.out" >> mpi_exec_shell
[1]	3133
	3134	chmod u+x mpi_exec_shell
	3135	export MPIPROGINF=YES
	3136	mpirun -f multinode_config &
	3137	wait
	3138
	3139	fi
[82]	3140	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
[1]	3141	then
	3142
	3143	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3144	# DOES NOT EXIST
[179]	3145	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	3146	then
[179]	3147	if [[ -f $hostfile ]]
	3148	then
	3149	cp $hostfile hostfile
	3150	else
	3151	(( ii = 1 ))
	3152	while (( ii <= $numprocs / $threads_per_task ))
	3153	do
	3154	echo $localhost_realname >> hostfile
	3155	(( ii = ii + 1 ))
	3156	done
	3157	fi
	3158	eval zeile=\"`head -n $ii hostfile`\"
	3159	printf "\n *** running on: $zeile"
[1]	3160	fi
[179]	3161
[1]	3162	(( ii = $numprocs / $threads_per_task ))
	3163	export OMP_NUM_THREADS=$threads_per_task
[246]	3164	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3165	if [[ $threads_per_task != 1 ]]
	3166	then
[405]	3167	# increase stack size to unlimited, because large runs
	3168	# may abort otherwise
	3169	ulimit -Ss unlimited
	3170	printf "\n threads per task: $threads_per_task stacksize: unlimited"
[1]	3171	fi
[102]	3172	if [[ $run_coupled_model = false ]]
[1]	3173	then
[291]	3174	if [[ "$ocean_file_appendix" = true ]]
	3175	then
	3176	echo "precursor_ocean" > runfile_atmos
	3177	else
	3178	echo "precursor_atmos" > runfile_atmos
	3179	fi
[102]	3180	printf "\n\n"
[179]	3181	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3182	then
[221]	3183	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3184	then
[366]	3185	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
	3186	# export MPI_DSM_DISTRIBUTE=1
	3187	# MPI_DSM_CPULIST: pin MPI processes to cores
[377]	3188	if [[ $use_openmp = false ]]
	3189	then
[412]	3190	if [[ "$sgi_feature" = ice2 ]]
	3191	then
	3192	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
	3193	else
	3194	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
	3195	fi
[377]	3196	fi
[366]	3197	# MPI_IB_RAILS: use both IB rails on ICE2
	3198	export MPI_BUFS_PER_HOST=512
	3199	export MPI_IB_RAILS=2
[369]	3200	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
	3201	export MPI_CONNECTIONS_THRESHOLD=8192
[412]	3202	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
[223]	3203	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
[388]	3204
	3205	# next is test for openmp usage
	3206	# mpiexec -n $ii -pernode ./a.out $ROPTS < runfile_atmos
[221]	3207	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3208	then
[374]	3209	export MV2_NUM_PORTS=2
[376]	3210	# The default setting of MV2_CPU_MAPPING gives best results
[405]	3211	# export MV2_ENABLE_AFFINITY=1
[376]	3212	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
[412]	3213	# if [[ "$sgi_feature" = ice2 ]]
	3214	# then
	3215	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
	3216	# else
	3217	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
	3218	# fi
	3219	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
[405]	3220	if [[ $threads_per_task != 1 ]]
	3221	then
	3222	mpiexec -npernode 1 ./a.out $ROPTS < runfile_atmos
	3223	else
	3224	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
	3225	fi
[221]	3226	fi
[437]	3227	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[179]	3228	then
[223]	3229	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[164]	3230	else
[223]	3231	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3232	fi
[1]	3233	else
[164]	3234
[206]	3235	# currently there is no full MPI-2 support on ICE and XT4
	3236	(( iia = $numprocs_atmos / $threads_per_task ))
	3237	(( iio = $numprocs_ocean / $threads_per_task ))
	3238	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3239	printf "\n using $coupled_mode coupling"
[102]	3240	printf "\n\n"
[164]	3241
[206]	3242	if [[ $coupled_mode = "mpi2" ]]
[164]	3243	then
[206]	3244	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3245	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3246	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3247	then
[197]	3248
[221]	3249	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3250	then
	3251	# export MPI_LAUNCH_TIMEOUT=360
	3252	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3253	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3254	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3255	then
	3256	# ulimit -s 300000 # A too large stack size causes problems
	3257	# export MV2_NUM_PORTS=2
	3258	# export MV2_CPU_MAPPING=0:1:2:3
	3259	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3260	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3261	fi
[197]	3262
[437]	3263	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[206]	3264	then
[197]	3265
[206]	3266	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3267	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3268
	3269	else
	3270	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3271	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3272	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3273	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3274	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3275	fi
	3276	wait
	3277
[164]	3278	else
	3279
[206]	3280	echo "coupled_run $iia $iio" > runfile_atmos
	3281	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3282	then
	3283
[221]	3284	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3285	then
	3286	# export MPI_LAUNCH_TIMEOUT=360
	3287	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3288	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3289	then
	3290	# ulimit -s 300000 # A too large stack size causes problems
	3291	# export MV2_NUM_PORTS=2
	3292	# export MV2_CPU_MAPPING=0:1:2:3
	3293	mpiexec ./a.out $ROPTS < runfile_atmos
	3294	fi
[206]	3295
[437]	3296	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[206]	3297	then
	3298
	3299	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3300
[367]	3301	elif [[ $host = lck ]]
	3302	then
	3303	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
[206]	3304	fi
	3305	wait
[164]	3306	fi
[102]	3307
	3308	# if [[ $scirocco = true ]]
	3309	# then
	3310	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
	3311	# else
	3312	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
	3313	# fi
[206]	3314	fi
[1]	3315	elif [[ $host = decalpha ]]
	3316	then
[102]	3317	dmpirun -np $numprocs a.out $ROPTS
[1]	3318	elif [[ $host = lctit ]]
	3319	then
	3320	export runfile=runfile.$kennung
	3321
	3322	echo "cd $PWD" > $runfile
	3323	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
	3324	echo "export cpurest=$cpurest" >> $runfile
	3325	echo "export fname=$fname" >> $runfile
	3326	echo "export localhost=$localhost" >> $runfile
	3327	echo "export return_addres=$return_addres" >> $runfile
	3328	echo "export return_username=$return_username" >> $runfile
	3329	echo "export tasks_per_node=$tasks_per_node" >> $runfile
	3330	echo "export write_binary=$write_binary" >> $runfile
	3331	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
	3332	echo "./a.out" >> $runfile
	3333	chmod u+x $runfile
	3334
	3335	if [[ "$QUEUE" = interactive ]]
	3336	then
[102]	3337	mpirun -np $numprocs a.out $ROPTS
[1]	3338	else
[127]	3339	(( mem_tsubame = $memory / 1024.0 ))
	3340	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
[118]	3341	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
[265]	3342	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
	3343	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
[1]	3344	fi
	3345
	3346	rm $runfile
	3347	else
[102]	3348	mpprun -n $numprocs a.out $ROPTS
[1]	3349	fi
	3350	[[ $? != 0 ]] && execution_error=true
	3351
	3352
	3353	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3354	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3355	then
	3356	apprentice
	3357	fi
	3358	else
[102]	3359	a.out $ROPTS
[1]	3360	fi
	3361	fi
	3362	if [[ $? != 0 \|\| $execution_error = true ]]
	3363	then
	3364
	3365	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3366	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3367	printf "\n +++ runtime error occured"
	3368	locat=execution
	3369	exit
	3370	else
[102]	3371	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3372	printf "\n$striche\n *** execution finished \n"
[260]	3373
[261]	3374	# Stop the dvr streaming server and process the dvr output in order
	3375	# to create dvrs- and html-files containing all streams
[260]	3376	if [[ "$dvrserver_id" != "" ]]
	3377	then
	3378	kill $dvrserver_id
	3379	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3380
[262]	3381	# If there is a directory, data have been output by the
	3382	# streaming server. Otherwise, user has chosen dvrp_output=local
	3383	if [[ -d DATA_DVR ]]
	3384	then
[261]	3385
[262]	3386	# Add the current dvr configuration file to the dvr output
	3387	# directory
	3388	cp .dvrserver.config DATA_DVR
	3389
	3390	# Process the dvr output (option -s for also generating
	3391	# sequence mode data)
	3392	process_dvr_output -d DATA_DVR -f $fname -s
	3393
	3394	else
	3395
	3396	# Process the local output
	3397	process_dvr_output -l -d DATA_DVR -f $fname
	3398
	3399	fi
	3400
	3401	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3402	then
	3403
	3404	# Process dvr output generated in local mode (dvrp_output=local)
	3405	process_dvr_output -l -d DATA_DVR -f $fname
	3406
[260]	3407	fi
[1]	3408	fi
	3409
	3410
	3411
	3412	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3413	(( i = 0 ))
	3414	while (( i < ioc ))
	3415	do
	3416	(( i = i + 1 ))
	3417	if (( i == 1 ))
	3418	then
	3419	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3420	fi
	3421	printf "\n >>> ${out_command[$i]}"
	3422	eval ${out_command[$i]}
	3423	if (( i == ioc ))
	3424	then
	3425	printf "\n$striche\n"
	3426	fi
	3427	done
	3428
	3429
	3430	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3431	if [[ $do_trace = true ]]
	3432	then
	3433	printf "\n\n"
	3434	ls -al
	3435	fi
	3436
	3437
	3438
	3439	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3440	(( i = 0 ))
	3441	while (( i < iout ))
	3442	do
	3443	(( i = i + 1 ))
	3444	if (( i == 1 ))
	3445	then
	3446	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3447	fi
	3448
	3449	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3450	files_for_pes=false; filetyp=file
	3451	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3452	then
	3453	files_for_pes=true; filetyp=directory
	3454	actionout[$i]=""
	3455	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3456	then
	3457	actionout[$i]=""
	3458	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3459	then
	3460	files_for_pes=true; filetyp=directory
	3461	actionout[$i]="ar"
	3462	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3463	then
	3464	actionout[$i]="ar"
	3465	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3466	then
	3467	files_for_pes=true; filetyp=directory
	3468	actionout[$i]="fl"
	3469	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3470	then
	3471	actionout[$i]="fl"
	3472	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3473	then
	3474	files_for_pes=true; filetyp=directory
	3475	actionout[$i]="tr"
	3476	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3477	then
	3478	actionout[$i]="tr"
	3479	fi
	3480
	3481	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3482	then
	3483	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3484	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3485	then
	3486	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3487	else
	3488
	3489
	3490	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3491	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3492	# REMOTE-RECHNUNGEN
	3493	if [[ "${actionout[$i]}" = tr ]]
	3494	then
	3495	if [[ $localhost != $fromhost ]]
	3496	then
	3497	if [[ $files_for_pes = false ]]
	3498	then
	3499	cps=""
	3500	cst=""
	3501	else
	3502	cps=-c
	3503	cst="/"
	3504	fi
[325]	3505	if [[ $localhost = ibmb \|\| $localhost = nech ]]
[1]	3506	then
	3507
	3508	# TRANSFER IN EIGENSTAENDIGEM JOB
	3509	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3510	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3511	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3512	if [[ $files_for_pes = false ]]
	3513	then
	3514	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3515	else
	3516	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3517	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3518	fi
	3519
	3520	echo "set -x" > transfer_${localout[$i]}
	3521	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3522
	3523	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	3524	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	3525	printf "\n or higher cycle\n"
	3526	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3527
[1]	3528	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3529
	3530	if [[ $localhost = nech ]]
	3531	then
[82]	3532	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3533	else
	3534	if [[ "$LOGNAME" = b323013 ]]
	3535	then
[164]	3536	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3537	else
[164]	3538	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3539	fi
	3540	fi
	3541
	3542	else
	3543
	3544	# TRANSFER INNERHALB DIESES JOBS
	3545	transfer_failed=false
[82]	3546	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	3547	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	3548	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3549	[[ $? != 0 ]] && transfer_failed=true
[1]	3550
	3551	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3552	# LOKALER MASCHINE ANLEGEN
	3553	if [[ $transfer_failed = true ]]
	3554	then
	3555	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3556	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3557
	3558	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3559	# ANLEGEN.
	3560	eval local_catalog=${pathout[$i]}
	3561	if [[ ! -d $local_catalog ]]
	3562	then
	3563	printf " *** local directory does not exist. Trying to create:\n"
	3564	printf " $local_catalog \n"
	3565	mkdir -p $local_catalog
	3566	fi
	3567	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3568	transfer_problems=true
	3569	fi
	3570	fi
	3571	else
	3572
	3573	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	3574	actionout[$i]=""
	3575	fi
	3576	fi
	3577
	3578
	3579	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3580	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3581	# REMOTE-RECHNUNGEN
	3582	if [[ "${actionout[$i]}" = tra ]]
	3583	then
	3584	if [[ $localhost != $fromhost ]]
	3585	then
	3586	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
	3587	then
	3588
	3589	# TRANSFER IN EIGENSTAENDIGEM JOB
	3590	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3591	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3592	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3593	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3594
	3595	echo "set -x" > transfer_${localout[$i]}
	3596	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3597
	3598	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	3599	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	3600	printf "\n or higher cycle\n"
	3601	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3602
[1]	3603	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3604
	3605	if [[ $localhost = nech ]]
	3606	then
[82]	3607	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3608	else
	3609	if [[ $LOGNAME = b323013 ]]
	3610	then
[164]	3611	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3612	else
[164]	3613	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3614	fi
	3615	fi
	3616
	3617	else
	3618
	3619	# TRANSFER INNERHALB DIESES JOBS
	3620	transfer_failed=false
[82]	3621	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	3622	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	3623	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3624	[[ $? != 0 ]] && transfer_failed=true
[1]	3625
	3626	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3627	# LOKALER MASCHINE ANLEGEN
	3628	if [[ $transfer_failed = true ]]
	3629	then
	3630	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3631	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3632
	3633	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3634	# ANLEGEN
	3635	eval local_catalog=${pathout[$i]}
	3636	if [[ ! -d $local_catalog ]]
	3637	then
	3638	printf " *** local directory does not exist. Trying to create:\n"
	3639	printf " $local_catalog \n"
	3640	mkdir -p $local_catalog
	3641	fi
	3642
	3643	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3644	transfer_problems=true
	3645	fi
	3646	fi
	3647	else
	3648
	3649	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	3650	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	3651	actionout[$i]=a
	3652	fi
	3653	fi
	3654
	3655
	3656	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	3657	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	3658	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	3659	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	3660	if [[ "${actionout[$i]}" = fl ]]
	3661	then
	3662	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3663	chmod g+rx $tmp_data_catalog
	3664	if [[ $files_for_pes = false ]]
	3665	then
	3666	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3667	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3668	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	3669	else
	3670	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	3671	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3672	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	3673	cd ${localout[$i]}
	3674	for file in $(ls *)
	3675	do
	3676	ln -f $file $tmp_data_catalog/${frelout[$i]}
	3677	done
	3678	cd $TEMPDIR
[1]	3679	fi
	3680
	3681
	3682	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	3683	if [[ $store_on_archive_system = true ]]
	3684	then
	3685
	3686	if [[ $archive_system = asterix ]]
	3687	then
	3688	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3689	if [[ $files_for_pes = false ]]
	3690	then
	3691	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3692	else
	3693	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3694	fi
	3695	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3696	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	3697	echo "then" >> archive_${frelout[$i]}
	3698	echo " do_stageout=false" >> archive_${frelout[$i]}
	3699	echo "else" >> archive_${frelout[$i]}
	3700	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	3701	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	3702	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	3703	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	3704	if [[ $files_for_pes = false ]]
	3705	then
	3706	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	3707	else
	3708	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	3709	fi
	3710	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	3711	echo "fi" >> archive_${frelout[$i]}
	3712	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3713	elif [[ $archive_system = DMF ]]
	3714	then
	3715	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3716	if [[ $files_for_pes = false ]]
	3717	then
	3718	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	3719	locat=DMF
	3720	exit
	3721	else
	3722	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	3723	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	3724	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	3725	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	3726	fi
	3727	elif [[ $archive_system = tivoli ]]
	3728	then
	3729	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3730	if [[ $files_for_pes = false ]]
	3731	then
	3732	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3733	echo "set -x" >> archive_${frelout[$i]}
	3734	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3735	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3736	else
	3737
	3738	echo "set -x" >> archive_${frelout[$i]}
	3739	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3740	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3741	cd $tmp_data_catalog
	3742	all_files=`ls -1 ${frelout[$i]}/*`
	3743	cd - > /dev/null
	3744	(( inode = 0 ))
	3745	(( tp1 = tasks_per_node + 1 ))
	3746	while (( inode < nodes ))
	3747	do
	3748	# echo "*** all_files = \"$all_files\" "
	3749	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3750	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3751	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	3752	# echo "*** files = \"$files\" "
	3753	# echo "*** all_files = \"$all_files\" "
[416]	3754	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3755	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3756	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
	3757	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[397]	3758	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3759	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[1]	3760	(( inode = inode + 1 ))
	3761	done
	3762	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3763	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3764	fi
	3765	elif [[ $archive_system = ut ]]
	3766	then
	3767	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3768	if [[ $files_for_pes = false ]]
	3769	then
	3770	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3771	echo "set -x" >> archive_${frelout[$i]}
	3772	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3773	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3774	else
	3775
	3776	echo "set -x" >> archive_${frelout[$i]}
	3777	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3778	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3779	cd $tmp_data_catalog
	3780	all_files=`ls -1 ${frelout[$i]}/*`
	3781	cd - > /dev/null
	3782	(( inode = 0 ))
	3783	(( tp1 = tasks_per_node + 1 ))
	3784	while (( inode < nodes ))
	3785	do
	3786	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3787	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3788	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3789	(( inode = inode + 1 ))
	3790	done
	3791	fi
	3792	elif [[ $archive_system = none ]]
	3793	then
	3794	printf " +++ archiving on $localhost not available!\n"
	3795	fi
	3796
	3797	if [[ $archive_system != none ]]
	3798	then
[399]	3799	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
[1]	3800	then
[164]	3801	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[416]	3802	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
[1]	3803	elif [[ $localhost = nech ]]
	3804	then
[82]	3805	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3806	fi
	3807	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3808	fi
	3809	else
[399]	3810	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
[1]	3811	fi
	3812
	3813
	3814	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	3815	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3816	if [[ $files_for_pes = false ]]
	3817	then
	3818	cat /dev/null > ${pathout[$i]}
	3819	else
	3820	mkdir -p ${pathout[$i]}
	3821	fi
	3822
	3823	fi
	3824
	3825
	3826	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	3827	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	3828	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3829	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	3830	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	3831	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	3832	if [[ "${actionout[$i]}" = ar ]]
	3833	then
	3834	if [[ $files_for_pes = false ]]
	3835	then
	3836	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3837	printf "\n ${pathout[$i]}"
	3838	printf "\n File will be copied to archive-system ($archive_system) !\n"
	3839	else
	3840	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	3841	printf "\n ${pathout[$i]}"
	3842	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	3843	fi
	3844	mv ${localout[$i]} ${frelout[$i]}
	3845
	3846	file_saved=false
	3847
	3848	if [[ $archive_system = asterix ]]
	3849	then
	3850	do_stageout=true
	3851	(( stageout_anz = 0 ))
	3852	while [[ $do_stageout = true ]]
	3853	do
	3854	if [[ $files_for_pes = false ]]
	3855	then
	3856	stageout ${frelout[$i]} > STAGE_OUTPUT
	3857	else
	3858	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	3859	fi
	3860	cat STAGE_OUTPUT
	3861	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	3862	then
	3863	file_saved=true
	3864	do_stageout=false
	3865	else
	3866	if [[ $files_for_pes = false ]]
	3867	then
	3868	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	3869	else
	3870	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	3871	fi
	3872	(( stageout_anz = stageout_anz + 1 ))
	3873	if (( stageout_anz == 10 ))
	3874	then
	3875	printf "\n +++ stoped after 10 unsuccessful tries!"
	3876	archive_save=false
	3877	do_stageout=false
	3878	else
	3879	printf "\n *** new try to store on archive after 15 min:"
	3880	sleep 900
	3881	fi
	3882	fi
	3883	done
	3884	elif [[ $archive_system = DMF ]]
	3885	then
	3886	if [[ $files_for_pes = false ]]
	3887	then
	3888	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	3889	locat=DMF
	3890	exit
	3891	else
	3892	rm -rf $ARCHIVE/${frelout[$i]}
	3893	cp -r ${frelout[$i]} $ARCHIVE
	3894	fi
	3895	file_saved=true
	3896	elif [[ $archive_system = tivoli ]]
	3897	then
	3898	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3899	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3900	# GELEGT WERDEN
	3901	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3902	chmod g+rx $tmp_data_catalog
	3903	if [[ $files_for_pes = false ]]
	3904	then
	3905	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3906	else
	3907	mkdir $tmp_data_catalog/${frelout[$i]}
	3908	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3909	fi
	3910
	3911	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3912	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3913	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3914	if [[ $files_for_pes = false ]]
	3915	then
	3916	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3917	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3918	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3919	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3920	else
	3921	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3922	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3923	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3924	fi
	3925
[164]	3926	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3927	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3928	file_saved=true
	3929
	3930	elif [[ $archive_system = ut ]]
	3931	then
	3932	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3933	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3934	# GELEGT WERDEN
	3935	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3936	chmod g+rx $tmp_data_catalog
	3937	if [[ $files_for_pes = false ]]
	3938	then
	3939	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3940	else
	3941	mkdir $tmp_data_catalog/${frelout[$i]}
	3942	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3943	fi
	3944
	3945	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3946	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3947	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3948	if [[ $files_for_pes = false ]]
	3949	then
	3950	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3951	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3952	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3953	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3954	else
	3955	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3956	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3957	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3958	fi
	3959
[82]	3960	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3961	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3962	file_saved=true
	3963
	3964	else
	3965	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	3966	archive_save=false
	3967	fi
	3968	if [[ $file_saved = true ]]
	3969	then
	3970	if [[ $files_for_pes = false ]]
	3971	then
	3972	cat /dev/null > ${pathout[$i]}
	3973	else
	3974	mkdir -p ${pathout[$i]}
	3975	fi
	3976	fi
	3977	fi
	3978
	3979	# APPEND AUF LOKALER MASCHINE
	3980	if [[ "${actionout[$i]}" = "a" ]]
	3981	then
	3982	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	3983	cat ${localout[$i]} >> ${pathout[$i]}
	3984	fi
	3985
	3986	# KOPIEREN AUF LOKALER MASCHINE
	3987	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	3988	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	3989	then
	3990
	3991	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	3992	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	3993	then
	3994	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	3995	if [[ $link_local_output = true ]]
	3996	then
	3997	printf " using ln -f\n"
	3998	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3999	fi
	4000	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4001	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	4002	then
	4003	if [[ $link_local_output = true ]]
	4004	then
	4005	printf " ln failed, using cp...\n"
	4006	fi
	4007	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4008	fi
[1]	4009	else
	4010	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	4011	if [[ $link_local_output = true ]]
	4012	then
	4013	printf " using ln -f\n"
	4014	ln -f ${localout[$i]} ${pathout[$i]}
	4015	fi
	4016	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4017	if [[ ! -f "${pathout[$i]}" ]]
	4018	then
	4019	if [[ $link_local_output = true ]]
	4020	then
	4021	printf " ln failed, using cp...\n"
	4022	fi
	4023	cp ${localout[$i]} ${pathout[$i]}
	4024	fi
[1]	4025	fi
	4026
	4027	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	4028	then
	4029
	4030	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	4031	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	4032	# WIRD DANN KOPIERT
	4033	# PER MOVE UMBENANNT WERDEN
	4034	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	4035	if [[ $link_local_output = true ]]
	4036	then
	4037	printf " using ln -f\n"
	4038	mkdir ${pathout[$i]}
	4039	cd ${localout[$i]}
	4040	for file in $(ls *)
	4041	do
	4042	ln -f $file ${pathout[$i]}
	4043	done
	4044	cd $TEMPDIR
	4045	fi
	4046	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	4047	if [[ ! -f "${pathout[$i]}/_0000" ]]
	4048	then
	4049	if [[ $link_local_output = true ]]
	4050	then
	4051	printf " ln failed for .../_0000, using cp...\n"
	4052	fi
	4053	cp -r ${localout[$i]} ${pathout[$i]}
	4054	fi
[1]	4055
	4056	fi
	4057	fi
	4058	done
	4059	if (( i != 0 ))
	4060	then
	4061	if [[ $transfer_problems = true ]]
	4062	then
	4063	printf "\n$striche\n *** OUTPUT-files saved"
	4064	printf "\n +++ WARNING: some data transfers failed! \n"
	4065	else
	4066	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4067	fi
	4068	fi
	4069
	4070
	4071	# EVENTUELL FOLGEJOB STARTEN
	4072	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4073	if [[ -f CONTINUE_RUN ]]
	4074	then
	4075
	4076	if [[ $archive_save = true ]]
	4077	then
	4078
	4079	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4080	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4081	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4082	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4083	# HANDEN
	4084	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4085	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4086	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4087	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4088	then
	4089	mc=`echo $mc \| sed 's/#/f/g'`
	4090	fi
	4091
	4092
	4093	# JOB STARTEN
	4094	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4095	echo " $mc"
	4096	printf "\n$striche\n"
	4097	if [[ $localhost != $fromhost ]]
	4098	then
	4099
[204]	4100	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
[1]	4101	then
	4102	echo "*** ssh will be used to initiate restart-runs!"
	4103	echo " return_addres=\"$return_addres\" "
	4104	echo " return_username=\"$return_username\" "
	4105	if [[ $return_addres = 172.20.25.41 ]]
	4106	then
	4107	# WORKAROUND AUF SCIROCCO AM TIT
[374]	4108	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
	4109	elif [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
	4110	then
	4111	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4112	else
[33]	4113	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4114	fi
	4115	else
	4116	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4117	locat=restart; exit
	4118	fi
	4119
	4120	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4121	# DER AKTUELLE JOB ENDET
[399]	4122	if [[ $queue = special1q ]]
	4123	then
	4124	sleep 120
	4125	else
	4126	sleep 30
	4127	fi
[1]	4128
	4129	else
	4130
	4131	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4132	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4133	cd $LOCAL_PWD
[108]	4134	if [[ $localhost = lcfimm ]]
	4135	then
	4136	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4137	else
	4138	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4139	fi
[1]	4140	cd - > /dev/null
	4141	fi
	4142	printf "\n$striche\n *** restart-run initiated \n"
	4143
	4144
	4145	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4146	# GEHOLT WORDEN SIND, LOESCHEN
	4147	(( i = 0 ))
	4148	while (( i < iin ))
	4149	do
	4150	(( i = i + 1 ))
	4151	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4152	then
	4153	rm -r $tmp_data_catalog/${frelin[$i]}
	4154	fi
	4155	done
	4156
	4157	else
	4158
	4159	printf "\n +++ no restart-run possible, since errors occured"
	4160	printf "\n during the archive process"
	4161	fi
	4162
	4163	fi
	4164
	4165
	4166
	4167	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4168	if [[ "$email_notification" != "none" ]]
[1]	4169	then
	4170
	4171	if [[ $localhost != $fromhost ]]
	4172	then
	4173	if [[ -f CONTINUE_RUN ]]
	4174	then
	4175	echo "PALM restart run necessary" > email_text
	4176	echo "description header of actual run:" >> email_text
	4177	cat CONTINUE_RUN >> email_text
	4178	echo "mrun-command to restart:" >> email_text
	4179	echo "$mc" >> email_text
	4180	else
	4181	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4182	fi
	4183	mail $email_notification < email_text
	4184	printf "\n *** email notification sent to \"$email_notification\" "
	4185	fi
	4186	fi
	4187
	4188
	4189
	4190	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4191	cd $HOME
	4192	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4193
	4194	else
	4195
	4196
	4197	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4198	# CHENDE AKTIONEN DURCHGEFUEHRT
	4199
	4200	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[82]	4201	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	4202	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4203	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4204	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4205	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4206	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4207	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4208	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4209	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4210	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4211	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4212	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4213	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4214	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4215	if [[ $use_openmp = true ]]
	4216	then
	4217	mrun_com=${mrun_com}" -O"
	4218	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
	4219	else
	4220	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
	4221	fi
[397]	4222	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
[1]	4223	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4224	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4225	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4226	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4227	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4228	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[1]	4229	if [[ $do_remote = true ]]
	4230	then
	4231	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4232	fi
	4233
	4234
	4235	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4236	jobfile=jobfile.$RANDOM
	4237
	4238
	4239	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4240	echo "mkdir $TEMPDIR" >> $jobfile
	4241	echo "cd $TEMPDIR" >> $jobfile
	4242
	4243
	4244	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4245	if [[ $do_trace = true ]]
	4246	then
	4247	echo "set -x" >> $jobfile
	4248	else
	4249	echo "set +vx" >> $jobfile
	4250	fi
	4251
	4252
[191]	4253	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4254	# DATEI FUER DEN JOB
	4255	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
[1]	4256	then
	4257
[191]	4258	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4259	# KOPIEREN
	4260	if [[ $restart_run != true ]]
	4261	then
	4262	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4263	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4264	fi
[1]	4265
[191]	4266	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[193]	4267	echo "set -x" >> $jobfile
	4268	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4269	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4270
[193]	4271	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4272	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4273	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4274	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4275	echo "execute_mrun=true" >> $jobfile
	4276	echo " " >> $jobfile
	4277
[191]	4278	else
	4279
	4280	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4281	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4282	if [[ $do_compile = true ]]
	4283	then
	4284
	4285	source_catalog=SOURCES_FOR_RUN_$fname
	4286
	4287	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4288	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4289	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4290	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4291	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4292	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4293
	4294	for filename in $source_list
	4295	do
	4296	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4297	echo "cat > $filename << \"%END%\"" >> $jobfile
	4298	cat $source_catalog/$filename >> $jobfile
	4299	echo " " >> $jobfile
	4300	echo "%END%" >> $jobfile
	4301	echo " " >> $jobfile
	4302	done
	4303
[1]	4304	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4305	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4306	cat $source_catalog/Makefile >> $jobfile
[1]	4307	echo " " >> $jobfile
	4308	echo "%END%" >> $jobfile
	4309	echo " " >> $jobfile
	4310
[191]	4311	echo "cd - > /dev/null" >> $jobfile
[1]	4312
[191]	4313	fi
[1]	4314
	4315
[191]	4316	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4317	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4318	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4319	cat $config_file >> $jobfile
	4320	echo "%END%" >> $jobfile
	4321	echo " " >> $jobfile
[1]	4322
	4323
[191]	4324	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4325	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4326	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4327	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4328	echo "%END%" >> $jobfile
	4329	if [[ $host = lctit ]]
	4330	then
	4331	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
	4332	echo "mv mrun_new $mrun_script_name" >> $jobfile
	4333	fi
	4334	echo "chmod u+x $mrun_script_name" >> $jobfile
	4335	echo "execute_mrun=true" >> $jobfile
	4336	echo " " >> $jobfile
[1]	4337
	4338	fi
	4339
[191]	4340
[1]	4341	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4342	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4343	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4344	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4345	if [[ $do_remote = true ]]
	4346	then
	4347	(( i = 0 ))
	4348	while (( i < iin ))
	4349	do
	4350	(( i = i + 1 ))
	4351	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4352	if [[ "${transin[$i]}" = job ]]
	4353	then
	4354	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4355	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4356	echo " " >> $jobfile
	4357	echo "%END%" >> $jobfile
	4358	else
[82]	4359	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4360	fi
	4361
	4362	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4363	echo "if [[ \$? = 1 ]]" >> $jobfile
	4364	echo "then" >> $jobfile
	4365	echo " echo \" \" " >> $jobfile
	4366	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4367	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4368	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4369	echo " execute_mrun=false" >> $jobfile
	4370	echo "fi" >> $jobfile
	4371	done
	4372	fi
	4373
	4374	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4375	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4376	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4377	echo "export LOCAL_PWD" >> $jobfile
	4378
	4379	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4380	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4381	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4382
[66]	4383	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4384	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4385	then
	4386	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4387	fi
[1]	4388
	4389	# MRUN AUF ZIELRECHNER AUFRUFEN
	4390	echo "set -x" >> $jobfile
	4391	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4392
	4393	echo 'ls -al; echo `pwd`' >> $jobfile
	4394	echo "cd \$HOME" >> $jobfile
	4395	echo "rm -rf $TEMPDIR" >> $jobfile
	4396
	4397
	4398
	4399
	4400	# JOB PER SUBJOB STARTEN
	4401	if [[ $silent = false ]]
	4402	then
	4403	printf "\n "
	4404	else
	4405	printf "\n\n"
	4406	fi
	4407
[352]	4408	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
[1]	4409	rm -rf $jobfile
	4410
	4411
	4412	fi # ENDE REMOTE-TEIL
	4413
	4414
	4415
	4416	# ENDE DER PROZEDUR

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