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source: palm/trunk/SCRIPTS/mrun @ 416

Last change on this file since 416 was 416, checked in by weinreis, 15 years ago
mrun and subjob modified for archiving
Property svn:keywords set to `Id Rev`
File size: 168.3 KB

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1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 416 2009-12-18 08:42:25Z weinreis $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
117	# + netcdf/dvrp-options are read from configuration
118	# file, host identifier (local_host) is read from
119	# config file, code related to ftp filetransfer
120	# removed (incl. option -f)
121	# 19/06/07 - Siggi - time limit for cdata jobs increased
122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
123	# if new option -Y (coupling) is given,
124	# output of executables to aout_output removed,
125	# messages are immediately written to stdout instead
126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
128	# variables out to the nodes in coupled mode -disabled-
129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
131	# environment variables out to the nodes in coupled mode
132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
133	# suggestions
134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
135	# argument -g group_number, admit all sla* node_usage
136	# queues
137	# 30/10/07 - Marcus - further adjustments for queues on lctit
138	# 14/02/08 - Bjoern - link of restart files with long file name possible
139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
140	# true, mrun tries "ln -f" on local output and resorts
141	# to "cp" or "cp -r" on error
142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
143	# which allows the user to choose his own job catalog
144	# by setting job_catalog in the configuration file
145	# (default is ~/job_queue),
146	# workaround for mpiexec with -env option,
147	# adjustments for lcxt4 (Bergen Center for Computational
148	# Science)
149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
150	# true, mrun tries "ln -f" on local input and resorts
151	# to "cp" or "cp -r" on error
152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
153	# 14/07/08 - Siggi - adjustments for lcsgih
154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
158	# argument
159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
160	# file
161	# 11/11/08 - Siggi - rules for using user code files changed: user
162	# code splitted into one file per subroutine,
163	# user can provide his/her own makefile, only
164	# default source-code filenames are allowed
165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
167	# with environment variable mpilib
168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
169	# using environment variable totalview
170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
171	# interactive runs
172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
174	# dvr streaming server is automatically started using
175	# new variable dvr_server and a configuration file
176	# .dvrserver.config,
177	# processing of dvr output files using new script
178	# process_dvr_output implemented, in order to make
179	# dvr application more user friendly
180	# 20/03/09 - Marcus - update of n1ge command for lctit
181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
182	# to be followed by a coupled atmosphere-ocean run
183	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
184	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
185	# 08/07/09 - Siggi - default value for email_notification is none,
186	# option -e added to subjob
187	# 19/08/09 - Marcus - MPI debug option
188	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
189	# 25/08/09 - BjornM - adpated for lck
190	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
191	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
192	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
193	# switches on archiving, archiving on SGI-ICE enabled
194	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
195	# adjustment for special1q
196	# 18/12/09 - Carolin- modification of archiving (permq)
197	#
198
199	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
200
201	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
202	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
203	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
204
205	AddFilenames=""
206	additional_conditions=""
207	add_source_path=""
208	afname=""
209	archive_save=true
210	archive_system=none
211	compiler_name=""
212	cond1=""
213	cond2=""
214	config_file=.mrun.config
215	coupled_dist=""
216	coupled_mode="mpi1"
217	cpp_opts=""
218	cpp_options=""
219	cpumax=0
220	cpurest=0
221	delete_temporary_catalog=true
222	do_batch=false
223	do_compile=true
224	do_remote=false
225	do_stagein=true
226	do_stageout=true
227	do_trace=false
228	email_notification="none"
229	exclude=""
230	executable=""
231	execution_error=false
232	fimm=false
233	fname=test
234	fromhost=""
235	global_revision=""
236	group_number=none
237	host=""
238	host_file=""
239	hp=""
240	ignore_archive_error=false
241	input_list=""
242	interpreted_config_file=""
243	job_catalog="~/job_queue"
244	job_on_file=""
245	keep_data_from_previous_run=false
246	link_local_input=false
247	link_local_output=false
248	localhost_realname=$(hostname)
249	local_compile=false
250	local_dvrserver_running=.FALSE.
251	locat=normal
252	mainprog=""
253	makefile=""
254	mc=$0
255	while [[ $(echo $mc \| grep -c "/") != 0 ]]
256	do
257	mc=`echo $mc \| cut -f2- -d"/"`
258	done
259	module_files=""
260	mrun_script_name=$mc
261	netcdf_inc=""
262	netcdf_lib=""
263	netcdf_support=false
264	node_usage=default
265	numprocs=""
266	numprocs_atmos=0
267	numprocs_ocean=0
268	OOPT=""
269	openmp=false
270	output_list=""
271	package_list=""
272	punkte="..........................................................."
273	queue=none
274	read_from_config=""
275	restart_run=false
276	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
277	if [[ $return_addres = 130.75.105.158 ]]
278	then
279	return_addres=172.20.25.41
280	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
281	fi
282	return_password=""
283	return_username=$LOGNAME
284	remotecall=false
285	remote_username=""
286	run_coupled_model=false
287	run_mode=""
288	scirocco=false
289	store_on_archive_system=false
290	striche=" ----------------------------------------------------------------------------"
291	silent=false
292	source_list=""
293	source_path=SOURCE
294	tasks_per_node=""
295	threads_per_task=1
296	tmpcreate=false
297	tmp_data_catalog=""
298	transfer_problems=false
299	usern=$LOGNAME
300	use_openmp=false
301	working_directory=`pwd`
302	TOPT=""
303	XOPT=""
304	zeit=$( date \| cut -c 12-19 )
305
306	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
307	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
308
309	typeset -R30 calltime
310	typeset -L20 spalte1
311	typeset -L40 spalte2
312	typeset -L60 spalte3
313	typeset -L35 string1=`date`
314	typeset -L12 string2=$usern
315	typeset -L12 string3=$localhost_realname
316	typeset -L12 string4
317	typeset -L12 string5
318	typeset -L30 version="MRUN 2.0 Rev$Rev: 416 $"
319
320
321
322	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
323	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
324
325	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
326	# EXPORTIERT WERDEN
327	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
328	export group_number input_list memory numprocs output_list queue run_mode
329
330
331
332	# FEHLERBEHANDLUNG
333	# BEI EXIT:
334	trap 'rm -rf $working_directory/tmp_mrun
335	if [[ $locat != localhost ]]
336	then
337	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
338	# then
339	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
340	#MRUN-calls on $localhost
341	#
342	#date and time user localhost remotehost termination mrun-command
343	#--------------------------------------------------------------------------------------------------------------------
344	#%STATEND%
345	# chmod 666 ${mrun_path}/statistik/mrun_statistik
346	# fi
347	#
348	# # EINTRAG IN DIE STATISTIK-DATEI
349	# string4=$host
350	# string5=$locat
351	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
352	# then
353	# if [[ $do_batch = true ]]
354	# then
355	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
356	# else
357	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
358	# fi
359	# fi
360	echo " " > /dev/null
361	fi
362
363	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
364	then
365
366	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
367	(( i = 0 ))
368	while (( i < iec ))
369	do
370	(( i = i + 1 ))
371	printf "\n *** Execution of ERROR-command:\n"
372	printf " >>> ${err_command[$i]}\n"
373	eval ${err_command[$i]}
374	done
375	if [[ -n $interpreted_config_file ]] then
376	rm -rf $interpreted_config_file
377	fi
378	if [[ -n .mrun_environment ]] then
379	rm -rf .mrun_environment
380	fi
381	if [[ $tmpcreate = true ]]
382	then
383	printf "\n *** Contents of \"$TEMPDIR\":\n"
384	ls -al; cd
385	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
386	fi
387	if [[ "$dvrserver_id" != "" ]]
388	then
389	echo "+++ killing dvrserver_id=$dvrserver_id"
390	kill $dvrserver_id
391	fi
392	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
393	then
394	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
395	fi
396	printf "\n\n+++ MRUN killed \n\n"
397	elif [[ $locat != control_c ]]
398	then
399	printf "\n\n --> all actions finished\n\n"
400	printf " Bye, bye $usern !!\n\n"
401	fi' exit
402
403
404	# BEI TERMINAL-BREAK:
405	trap 'rm -rf $working_directory/tmp_mrun
406	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
407	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
408	then
409	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
410	fi
411	if [[ "$dvrserver_id" != "" ]]
412	then
413	echo "+++ killing dvrserver_id=$dvrserver_id"
414	kill $dvrserver_id
415	fi
416	printf "\n+++ MRUN killed by \"^C\" \n\n"
417	locat=control_c
418	exit
419	' 2
420
421
422	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
423	# BEEN SET
424	if [[ "$PALM_BIN" = "" ]]
425	then
426	printf "\n +++ environment variable PALM_BIN has not been set"
427	printf "\n please set it to the directory where the PALM scripts are located"
428	locat=palm_bin; exit
429	fi
430	export PATH=$PALM_BIN:$PATH
431
432
433
434	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
435	# FUER FOLGEJOBS BENOETIGT WIRD
436	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
437	do
438	case $option in
439	(a) afname=$OPTARG;;
440	(A) store_on_archive_system=true; mc="$mc -A";;
441	(b) do_batch=true; mc="$mc -b";;
442	(B) delete_temporary_catalog=false; mc="$mc -B";;
443	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
444	(C) restart_run=true; mc="$mc -C";;
445	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
446	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
447	(F) job_on_file="-D"; mc="$mc -F";;
448	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
449	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
450	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
451	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
452	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
453	(I) ignore_archive_error=true; mc="$mc -I";;
454	(k) keep_data_from_previous_run=true; mc="$mc -k";;
455	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
456	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
457	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
458	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
459	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
460	(O) use_openmp=true; mc="$mc -O";;
461	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
462	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
463	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
464	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
465	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
466	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
467	(S) read_from_config=false; mc="$mc -S";;
468	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
469	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
470	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
471	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
472	(v) silent=true; mc="$mc -v";;
473	(x) do_trace=true;set -x; mc="$mc -x";;
474	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
475	(y) ocean_file_appendix=true; mc="$mc -y";;
476	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
477	(\?) printf "\n +++ unknown option $OPTARG \n"
478	printf "\n --> type \"$0 ?\" for available options \n"
479	locat=parameter;exit;;
480	esac
481	done
482
483
484	# EVTL. POSITIONSPARAMETER EINLESEN
485	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
486	shift OPTIND-1
487
488
489	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
490	if [[ "$1" = "?" ]]
491	then
492	(printf "\n *** mrun can be called as follows:\n"
493	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
494	printf "\n Description of available options:\n"
495	printf "\n Option Description Default-Value"
496	printf "\n -a base name of input files equiv. -d"
497	printf "\n -A archiving when using file-attribute fl"
498	printf "\n -b batch-job on local machine ---"
499	printf "\n -B do not delete temporary directory at end ---"
500	printf "\n -c configuration file .mrun.config"
501	printf "\n -d base name of files attached to program test"
502	printf "\n -D preprocessor(cpp)-directives \"\" "
503	printf "\n -F create remote job file only ---"
504	printf "\n -h execution host $localhost_realname"
505	printf "\n -i INPUT control list \"\" "
506	printf "\n -I archiving errors of previous batch-jobs"
507	printf "\n will be ignored"
508	printf "\n -k keep data from previous run"
509	printf "\n -K additional conditions for controling"
510	printf "\n usage of conditional code and"
511	printf "\n env-variables in configuration file \"\" "
512	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
513	printf "\n -M Makefile name Makefile"
514	printf "\n -n node usage (shared/not_shared) depending on -h"
515	printf "\n -o OUTPUT control list \"\" "
516	printf "\n -O use OpenMP ---"
517	printf "\n -p software package list \"\" "
518	printf "\n -q queue \"$queue\" "
519	printf "\n -r run control list (combines -i -o) \"\" "
520	printf "\n -s filenames of routines to be compiled \"\" "
521	printf "\n must end with .f, .f90, .F, or .c !"
522	printf "\n use \"..\" for more than one file and wildcards"
523	printf "\n -s TEST compiles all files with w-permit"
524	printf "\n -S config file interpreted by shellscript ---"
525	printf "\n -t allowed cpu-time in seconds (batch) 0"
526	printf "\n -T tasks per node depending on -h"
527	printf "\n -u username on remote machine \"\" "
528	printf "\n -v no prompt for confirmation ---"
529	printf "\n -x tracing of mrun for debug purposes ---"
530	printf "\n -X # of processors (on parallel machines) 1"
531	printf "\n -y add appendix \"_O\" to all local output"
532	printf "\n files (ocean precursor runs followed by"
533	printf "\n coupled atmosphere-ocean runs) ---"
534	printf "\n -Y run coupled model, \"#1 #2\" with"
535	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
536	printf "\n "
537	printf "\n Possible values of positional parameter <modus>:"
538	printf "\n \"?\" - this outline \n\n") \| more
539	exit
540	elif [[ "$1" != "" ]]
541	then
542	printf "\n +++ positional parameter $1 unknown \n"
543	locat=parameter; exit
544	fi
545
546
547
548	# KURZE STARTMELDUNG
549	printf "\n*** $version "
550	printf "\n will be executed. Please wait ..."
551
552
553
554	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
555	if [[ ! -f $config_file ]]
556	then
557	printf "\n\n +++ configuration file: "
558	printf "\n $config_file"
559	printf "\n does not exist"
560	locat=connect; exit
561	fi
562
563
564	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
565	line=""
566	grep "%host_identifier" $config_file > tmp_mrun
567	while read line
568	do
569	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
570	then
571	HOSTNAME=`echo $line \| cut -d" " -s -f2`
572	host_identifier=`echo $line \| cut -d" " -s -f3`
573	if [[ $localhost_realname = $HOSTNAME ]]
574	then
575	localhost=$host_identifier
576	break
577	fi
578	fi
579	done < tmp_mrun
580
581	if [[ "$localhost" = "" ]]
582	then
583	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
584	printf "\n for local host \"$localhost_realname\"."
585	printf "\n Please add line"
586	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
587	printf "\n to the configuration file."
588	locat=localhost; exit
589	fi
590
591
592	# HOSTSPEZIFISCHE VARIABLEN SETZEN
593	case $localhost_realname in
594	(r1\|r2\|h01\|b01) archive_system=tivoli;;
595	(cs*) archive_system=ut;;
596	(fimm.bccs.uib.no) fimm=true;;
597	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
598	(scirocco) scirocco=true;;
599	esac
600
601
602
603	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
604	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
605	[[ "$afname" = "" ]] && afname=$fname
606
607
608	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
609	if [[ "$run_mode" != "" ]]
610	then
611	input_list="$input_list $run_mode"
612	output_list="$output_list $run_mode"
613	fi
614
615
616	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
617	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
618	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
619	# STARTET)
620	if [[ "$fromhost" = "" ]]
621	then
622	fromhost=$localhost
623	fi
624
625
626	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
627	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
628	then
629	source_list=TEST
630	local_compile=true
631	host=$localhost
632	fi
633
634
635	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
636	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
637	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
638	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
639	if [[ -n $host && "$host" != $localhost ]]
640	then
641	do_batch=true
642	do_remote=true
643	case $host in
644	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lck) true;;
645	(*) printf "\n"
646	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
647	printf "\n is not available"
648	locat=nqs; (( iec = 0 )); exit;;
649	esac
650	else
651	host=$localhost
652	fi
653
654
655	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
656	if [[ -n $additional_conditions ]]
657	then
658	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
659	cond1=`echo $additional_conditions \| cut -d" " -f1`
660	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
661	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
662	if [[ -n $dummy ]]
663	then
664	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
665	locat=options; exit
666	fi
667	fi
668
669
670	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
671	if [[ $run_coupled_model = true ]]
672	then
673
674	if [[ -n $coupled_dist ]]
675	then
676
677	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
678	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
679
680	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
681	then
682
683	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
684	printf "\n PEs (total) : $numprocs"
685	printf "\n PEs (atmosphere): $numprocs_atmos"
686	printf "\n PEs (ocean) : $numprocs_ocean"
687	locat=coupling; exit
688
689	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
690	# THIS SHOULD BE REMOVED IN FUTURE
691	elif (( $numprocs_ocean != $numprocs_atmos ))
692	then
693
694	printf "\n +++ currently only 1:1 topologies are supported"
695	printf "\n PEs (total) : $numprocs"
696	printf "\n PEs (atmosphere): $numprocs_atmos"
697	printf "\n PEs (ocean) : $numprocs_ocean"
698	(( numprocs_atmos = $numprocs / 2 ))
699	(( numprocs_ocean = $numprocs / 2 ))
700	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
701
702	fi
703
704	else
705
706	(( numprocs_ocean = $numprocs / 2 ))
707	(( numprocs_atmos = $numprocs / 2 ))
708
709	fi
710	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
711
712	# GET coupled_mode FROM THE CONFIG FILE
713	line=""
714	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
715	while read line
716	do
717	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
718	then
719	coupled_mode="mpi2"
720	fi
721	done < tmp_mrun
722
723	fi
724
725
726	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
727	# ARCHIVIERUNG FEHLGESCHLAGEN IST
728	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
729	then
730	if [[ $ignore_archive_error = false ]]
731	then
732	printf "\n +++ data archiving of previous run failed"
733	printf "\n see directory \~/job_queue on remote machine"
734	locat=archive; exit
735	else
736	printf "\n +++ warning: data archiving in a previous run failed"
737	printf "\n MRUN continues, trying to get backup copy"
738	fi
739	fi
740
741
742
743	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
744	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
745	if [[ "$read_from_config" = false ]]
746	then
747
748	[[ $silent = false ]] && printf "\n Reading the configuration file... "
749	while read zeile
750	do
751	[[ $silent = false ]] && printf "."
752
753
754	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
755	# ERSETZEN
756	eval zeile=\"$zeile\"
757
758
759	# INTERPRETATION DER ZEILE
760	if [[ "$(echo $zeile)" = "" ]]
761	then
762	# LEERZEILE, KEINE AKTION
763	continue
764
765	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
766	then
767
768	# ZEILE IST KOMMENTARZEILE
769	true
770
771	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
772	then
773
774	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
775	zeile=$(echo $zeile \| cut -c2-)
776	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
777	var=`echo $zeile \| cut -d" " -f1`
778	value=`echo $zeile \| cut -d" " -s -f2`
779	for_host=`echo $zeile \| cut -d" " -s -f3`
780	for_cond1=`echo $zeile \| cut -d" " -s -f4`
781	for_cond2=`echo $zeile \| cut -d" " -s -f5`
782
783	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
784	then
785
786	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
787	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
788	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
789
790
791	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
792	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
793	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
794	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
795	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
796	# KONFIGURATIONSDATEI
797	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
798	then
799	eval $var=\$value
800
801	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
802	if [[ $do_trace = true ]]
803	then
804	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
805	fi
806	fi
807
808	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
809	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
810	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
811	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
812	if [[ $var = host ]]
813	then
814	if [[ -n $host && "$host" != $localhost ]]
815	then
816	do_batch=true
817	do_remote=true
818	case $host in
819	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lck) true;;
820	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
821	printf "\n is not available"
822	locat=nqs; exit;;
823	esac
824	else
825	host=$localhost
826	fi
827	fi
828
829	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
830	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
831	# DEN PROGRAMMEN BENOETIGT WERDEN
832	export $var
833	fi
834
835
836
837
838	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
839	then
840
841	# ZEILE DEFINIERT ERROR-KOMMANDO
842	(( iec = iec + 1 ))
843	zeile=$(echo $zeile \| cut -c4-)
844	err_command[$iec]="$zeile"
845
846	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
847	then
848
849	# ZEILE DEFINIERT INPUT-KOMMANDO
850	(( iic = iic + 1 ))
851	zeile=$(echo $zeile \| cut -c4-)
852	in_command[$iic]="$zeile"
853
854	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
855	then
856
857	# ZEILE DEFINIERT OUTPUT-KOMMANDO
858	(( ioc = ioc + 1 ))
859	zeile=$(echo $zeile \| cut -c4-)
860	out_command[$ioc]="$zeile"
861
862	else
863
864	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
865	# s2a: in/out - Feld
866	# s2b: loc - Feld (optional)
867	# s2c: tr/ar - Feld (optional)
868	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
869	s1=`echo $zeile \| cut -d" " -f1`
870	s2=`echo $zeile \| cut -d" " -s -f2`
871	s2a=$(echo $s2 \| cut -d":" -f1)
872	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
873	then
874	s2b=""
875	s2c=""
876	else
877	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
878	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
879	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
880	fi
881	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
882	s3=`echo $zeile \| cut -d" " -f3`
883	s4=`echo $zeile \| cut -d" " -s -f4`
884	s5=`echo $zeile \| cut -d" " -s -f5`
885	s6=`echo $zeile \| cut -d" " -s -f6`
886
887
888	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
889	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
890	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
891	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
892	# HANDEN SEIN MUSS (D.H. s2b = loc)
893	IFSALT="$IFS"; IFS="$IFS:"
894	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
895	then
896	found=false
897	for actual in $input_list
898	do
899	for formal in $s3
900	do
901	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
902	done
903	done
904	if [[ $found = true ]]
905	then
906	(( iin = iin + 1 ))
907	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
908	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
909	extin[$iin]=$s6
910	fi
911	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
912	then
913	found=false
914	for actual in $output_list
915	do
916	for formal in $s3
917	do
918	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
919	done
920	done
921	if [[ $found = true ]]
922	then
923	(( iout = iout + 1 ))
924	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
925	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
926	fi
927	elif [[ "$s2a" != in && "$s2a" != out ]]
928	then
929	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
930	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
931	locat=connect; exit
932	fi
933	IFS="$IFSALT"
934	fi
935	done < $config_file
936
937	else
938
939
940	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
941	[[ $silent = false ]] && printf "..."
942	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
943	export interpreted_config_file=.icf.$RANDOM
944
945
946
947	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
948	# VERFUEGUNG STELLEN
949	cat > .mrun_environment << %%END%%
950	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
951	config_file = '$config_file', do_remote = '$do_remote',
952	do_trace = '$do_trace', host = '$host',
953	input_list = '$input_list', icf = '$interpreted_config_file',
954	localhost = '$localhost', output_list = '$output_list' /
955
956	%%END%%
957
958	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
959	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
960	mrun_memory=$memory
961	mrun_group_number=$group_number
962	mrun_cpumax=$cpumax
963	mrun_numprocs=$numprocs
964
965	if [[ $localhost_realname = "sx-fep" ]]
966	then
967	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
968	else
969	interpret_config.x
970	fi
971	rm .mrun_environment
972
973
974	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
975	chmod u+x $interpreted_config_file
976	export PATH=$PATH:.
977	. $interpreted_config_file
978	rm $interpreted_config_file
979
980
981	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
982	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
983	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
984	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
985	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
986
987	fi
988
989
990	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
991	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
992	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
993	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
994	if [[ "$SOURCES_COMPLETE" = "" ]]
995	then
996
997	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
998	# VEREINBART WURDE
999	source_path=""
1000	line=""
1001	grep "%source_path" $config_file > tmp_mrun
1002	while read line
1003	do
1004	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1005	then
1006	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1007	then
1008	global_source_path=`echo $line \| cut -d" " -f2`
1009	fi
1010	fi
1011	done < tmp_mrun
1012
1013	line=""
1014	found=false
1015	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1016	while read line
1017	do
1018	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1019	then
1020	if [[ $found = true ]]
1021	then
1022	printf "\n\n +++ more than one source path found in configuration file"
1023	printf "\n for local host \"$localhost\" "
1024	locat=source_path; exit
1025	fi
1026	source_path=`echo $line \| cut -d" " -f2`
1027	found=true
1028	fi
1029	done < tmp_mrun
1030	rm tmp_mrun
1031
1032	if [[ "$source_path" = "" ]]
1033	then
1034	if [[ "$global_source_path" != "" ]]
1035	then
1036	source_path=$global_source_path
1037	else
1038	printf "\n\n +++ no source path found in configuration file"
1039	printf "\n for local host \"$localhost\" "
1040	locat=source_path; exit
1041	fi
1042	fi
1043	eval source_path=$source_path
1044
1045	if [[ ! -d $source_path ]]
1046	then
1047	printf "\n\n +++ source path \"$source_path\" on local host"
1048	printf "\n \"$localhost\" does not exist"
1049	locat=source_path; exit
1050	fi
1051
1052	fi
1053
1054
1055	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1056	# DURCH OPTION -G MITGETEILT)
1057	if [[ "$global_revision" = "" ]]
1058	then
1059	global_revision=`svnversion $source_path 2>/dev/null`
1060	global_revision="Rev: $global_revision"
1061	fi
1062
1063
1064	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1065	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1066	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1067	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1068	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1069	if [[ -n $host && "$host" != $localhost ]]
1070	then
1071	do_batch=true
1072	do_remote=true
1073	case $host in
1074	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lck) true;;
1075	(*) printf "\n"
1076	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1077	printf "\n is not available"
1078	locat=nqs; (( iec = 0 )); exit;;
1079	esac
1080	else
1081	host=$localhost
1082	fi
1083
1084
1085	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1086	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1087	then
1088
1089	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1090	if [[ ! -n $numprocs ]]
1091	then
1092	printf "\n"
1093	printf "\n +++ option \"-K parallel\" requires additional specification"
1094	printf "\n of the number of processors to be used by"
1095	printf "\n mrun-option \"-X\" or by environment-variable"
1096	printf "\n \"numprocs\" in the configuration file"
1097	locat=numprocs; (( iec = 0 )); exit
1098	fi
1099
1100	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1101	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1102	# GESAMTPROZESSORANZAHL IST
1103	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1104	then
1105	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1106	(( ival = $tasks_per_node ))
1107	(( pes = numprocs ))
1108	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1109	# then
1110	# (( pes = pes - 1 ))
1111	# fi
1112	(( ii = pes / ival ))
1113	if (( pes - ii * ival > 0 ))
1114	then
1115	printf "\n"
1116	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1117	printf "\n divisor of the total number of processors (option \"-X\")"
1118	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1119	locat=tasks_per_node; (( iec = 0 )); exit
1120	fi
1121	fi
1122
1123	# IBMY HAT NUR EINEN KNOTEN
1124	if [[ $host = ibmy ]]
1125	then
1126	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1127	then
1128	printf "\n"
1129	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1130	printf "\n total number of processors (option \"-X\")"
1131	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1132	locat=tasks_per_node; (( iec = 0 )); exit
1133	fi
1134	fi
1135
1136	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1137	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1138	if [[ $use_openmp = true ]]
1139	then
1140	threads_per_task=$tasks_per_node
1141	tasks_per_node=1
1142	fi
1143
1144	# SETTINGS FOR SUBJOB-COMMAND
1145	if [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1146	then
1147	(( tp1 = tasks_per_node * threads_per_task ))
1148	TOPT="-T $tp1"
1149	else
1150	TOPT="-T $tasks_per_node"
1151	fi
1152	OOPT="-O $threads_per_task"
1153
1154	# GESAMTZAHL DER KNOTEN BESTIMMEN
1155	if [[ "$tasks_per_node" != "" ]]
1156	then
1157	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1158	fi
1159
1160	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1161	# SETZEN
1162	if [[ $node_usage = default ]]
1163	then
1164	if [[ $host = ibms ]]
1165	then
1166	node_usage=shared
1167	elif [[ $host = lctit ]]
1168	then
1169	node_usage=RAM64GB
1170	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1171	then
1172	node_usage=singlejob
1173	else
1174	node_usage=not_shared
1175	fi
1176	fi
1177
1178	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
1179	then
1180	printf "\n"
1181	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1182	printf "\n \"shared\" or \"not_shared\""
1183	locat=tasks_per_node; (( iec = 0 )); exit
1184	fi
1185
1186	fi
1187
1188	# PRUEFEN, OB HOSTFILE EXISTIERT
1189	if [[ -n $hostfile ]]
1190	then
1191	if [[ ! -f $hostfile ]]
1192	then
1193	printf "\n"
1194	printf "\n +++ hostfile \"$hostfile\" does not exist"
1195	locat=hostfile; exit
1196	fi
1197	fi
1198
1199	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1200	if [[ $host = ibmy && $do_remote = false ]]
1201	then
1202	if [[ ! -f $HOME/.rhosts ]]
1203	then
1204	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1205	printf "\n\n *** file:"
1206	printf "\n $HOME/.rhosts"
1207	printf "\n was created\n"
1208	fi
1209	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1210	then
1211	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1212	printf "\n\n *** file:"
1213	printf "\n $HOME/.rhosts"
1214	printf "\n was extended by the name of the current host\n"
1215	fi
1216	fi
1217
1218
1219
1220	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1221	if [[ $queue = none ]]
1222	then
1223	case $host in
1224	(ibmb) if [[ $node_usage = shared ]]
1225	then
1226	queue=cshare
1227	else
1228	queue=csolo
1229	fi;;
1230	(ibmh) queue=no_class;;
1231	(ibmy) queue=parallel;;
1232	(lcsgib) queue=bigq;;
1233	(lcsgih) queue=bigq;;
1234	(lctit) queue=RAM64GB;;
1235	(nech) queue=none;;
1236	(necriam) queue=SP;;
1237	(unics) queue=unics;;
1238	esac
1239	fi
1240
1241
1242	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1243	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1244	# ERMITTELN
1245	(( i = 0 ))
1246	while (( i < iin ))
1247	do
1248	(( i = i + 1 ))
1249	(( maxcycle = 0 ))
1250
1251	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1252	if [[ "${actionin[$i]}" = di ]]
1253	then
1254	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1255	# REM-MASCHINE AUSWERTEN
1256	eval filename=${pathin[$i]}/${endin[$i]}
1257	else
1258	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1259	# REM-MASCHINE AUSWERTEN
1260	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1261	fi
1262
1263	# PRUEFEN AUF VORHANDENSEIN
1264	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1265	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1266	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1267	then
1268	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1269	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1270	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1271	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1272	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1273	if [[ "${transin[$i]}" != "locopt" ]]
1274	then
1275	printf "\n\n +++ INPUT-file: "
1276	if [[ "${extin[$i]}" = "" ]]
1277	then
1278	printf "\n $filename"
1279	else
1280	printf "\n $filename.${extin[$i]}"
1281	fi
1282	printf "\n does not exist\n"
1283	locat=input; exit
1284	else
1285	transin[$i]="unavailable"
1286	fi
1287	else
1288
1289	# ZYKLUSNUMMER FESTSTELLEN
1290	ls -1 -d $filename > filelist 2>/dev/null
1291	ls -1 -d $filename.* >> filelist 2>/dev/null
1292	while read zeile
1293	do
1294	cycle=$(print $zeile \| cut -f2 -d".")
1295	if [[ "$cycle" = "$zeile" ]]
1296	then
1297	(( icycle = 0 ))
1298	elif [[ "$cycle" = "${extin[$i]}" ]]
1299	then
1300	(( icycle = 0 ))
1301	else
1302	(( icycle = $cycle ))
1303	fi
1304	if (( icycle > maxcycle ))
1305	then
1306	(( maxcycle = icycle ))
1307	file_to_be_used=$zeile
1308	fi
1309	done <filelist
1310	rm filelist
1311
1312	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1313	if (( maxcycle > 0 ))
1314	then
1315	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1316	then
1317	filename=${filename}.$maxcycle.${extin[$i]}
1318	else
1319	filename=${filename}.$maxcycle
1320	fi
1321	else
1322	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1323	then
1324	filename=${filename}.${extin[$i]}
1325	fi
1326	fi
1327
1328	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1329	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1330	absnamein[$i]=$filename
1331	if (( maxcycle > 0 ))
1332	then
1333	if [[ "${actionin[$i]}" = di ]]
1334	then
1335	frelin[$i]=${endin[$i]}.$maxcycle
1336	else
1337	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1338	fi
1339	else
1340	if [[ "${actionin[$i]}" = di ]]
1341	then
1342	frelin[$i]=${endin[$i]}
1343	else
1344	frelin[$i]=${afname}${endin[$i]}
1345	fi
1346	fi
1347
1348	fi
1349	done
1350
1351
1352	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1353	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1354	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1355	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1356	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1357	(( i = 0 ))
1358	while (( i < iout ))
1359	do
1360	(( i = i + 1 ))
1361	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1362	then
1363	if [[ "${actionout[$i]}" = tr ]]
1364	then
1365	actionout[$i]=""
1366	elif [[ "${actionout[$i]}" = trpe ]]
1367	then
1368	actionout[$i]=pe
1369	elif [[ "${actionout[$i]}" = tra ]]
1370	then
1371	actionout[$i]=a
1372	fi
1373	(( maxcycle = 0 ))
1374	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1375	eval catalogname=${pathout[$i]}
1376	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1377	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1378	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1379	then
1380
1381	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1382	if cat /dev/null > $filename
1383	then
1384	rm $filename
1385	else
1386
1387	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1388	if [[ ! -d $catalogname ]]
1389	then
1390	if mkdir -p $catalogname
1391	then
1392	printf "\n\n *** directory:"
1393	printf "\n $catalogname"
1394	printf "\n was created\n"
1395	else
1396	printf "\n\n +++ OUTPUT-file:"
1397	printf "\n $filename"
1398	printf "\n cannot be created, because directory does not exist"
1399	printf "\n and cannot be created either"
1400	printf "\n"
1401	locat=output ; exit
1402	fi 2>/dev/null
1403	else
1404	printf "\n\n +++ OUTPUT-file:"
1405	printf "\n $filename"
1406	printf "\n cannot be created, although directory exists"
1407	printf "\n"
1408	locat=output ; exit
1409	fi
1410	fi 2>/dev/null
1411	else
1412
1413	# ZYKLUSNUMMER FESTSTELLEN
1414	ls -1 -d $filename > filelist 2>/dev/null
1415	ls -1 -d $filename.* >> filelist 2>/dev/null
1416	while read zeile
1417	do
1418	cycle=$(print $zeile \| cut -f2 -d".")
1419	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1420	then
1421	(( icycle = 1 ))
1422	else
1423	(( icycle = $cycle + 1 ))
1424	fi
1425	if (( icycle > maxcycle ))
1426	then
1427	(( maxcycle = icycle ))
1428	fi
1429	done <filelist
1430	rm filelist
1431	fi
1432
1433	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1434	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1435	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1436	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1437	if [[ "${actionout[$i]}" != a ]]
1438	then
1439	if (( maxcycle > 0 ))
1440	then
1441	filename=${filename}.$maxcycle
1442	if cat /dev/null > $filename
1443	then
1444	rm $filename
1445	else
1446	printf "\n +++ OUTPUT-file:"
1447	printf "\n $filename"
1448	printf "\n cannot be created"
1449	locat=output ; exit
1450	fi
1451	fi
1452	else
1453	(( maxcycle = maxcycle - 1 ))
1454	if (( maxcycle > 0 ))
1455	then
1456	filename=${filename}.$maxcycle
1457	fi
1458	fi
1459
1460	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1461	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1462	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1463	pathout[$i]=$filename
1464	if (( maxcycle > 0 ))
1465	then
1466	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1467	else
1468	frelout[$i]=${fname}${endout[$i]}
1469	fi
1470
1471	fi
1472	done
1473
1474
1475	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1476	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1477	then
1478	if [[ "$dvr_inc" = "" ]]
1479	then
1480	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1481	printf "\n This is required for the dvrp_graphics package.\n"
1482	locat=dvr; exit
1483	fi
1484	if [[ "$dvr_lib" = "" ]]
1485	then
1486	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1487	printf "\n This is required for the dvrp_graphics package.\n"
1488	locat=dvr; exit
1489	fi
1490	fi
1491
1492
1493	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1494	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1495	# UEBERSETZT ZU WERDEN)
1496	if [[ "$mainprog" = "" && "$executable" = "" ]]
1497	then
1498	printf "\n +++ neither main program nor executable defined"
1499	locat=source; exit
1500	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1501	then
1502	printf "\n +++ main program as well as executable defined"
1503	locat=source; exit
1504	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1505	then
1506	do_compile=false
1507	fi
1508
1509
1510	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1511	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1512	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1513	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1514	then
1515	rm -rf SOURCES_FOR_RUN_$fname
1516	mkdir SOURCES_FOR_RUN_$fname
1517	fi
1518
1519
1520	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1521	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1522	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1523	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1524	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1525	then
1526
1527	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1528	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1529
1530
1531	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1532	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1533	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1534	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1535	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1536	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1537	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1538	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1539	# GESAMMELT
1540	if [[ "$source_list" = WRITE_PERMIT ]]
1541	then
1542
1543	source_list=""
1544	cd $source_path
1545
1546
1547	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1548	Names=$(ls -1 *.f90 2>&1)
1549	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1550	Names=$(ls -1 *.F90 2>&1)
1551	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1552	Names=$(ls -1 *.F 2>&1)
1553	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1554	Names=$(ls -1 *.f 2>&1)
1555	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1556	Names=$(ls -1 *.c 2>&1)
1557	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1558
1559
1560	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1561	for dateiname in $Filenames
1562	do
1563	if [[ -w $dateiname ]]
1564	then
1565	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1566	then
1567	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1568	source_list=$source_list"$dateiname "
1569	fi
1570	fi
1571	done
1572
1573	cd - > /dev/null
1574
1575
1576	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1577	then
1578
1579	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1580	source_list=""
1581	cd $source_path
1582
1583
1584	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1585	if [[ ! -d .svn ]]
1586	then
1587	printf "\n\n +++ source directory"
1588	printf "\n \"$source_path\" "
1589	printf "\n is not under control of \"subversion\"."
1590	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1591	fi
1592
1593
1594	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1595	Filenames=""
1596	svn status > tmp_mrun
1597	while read line
1598	do
1599	firstc=`echo $line \| cut -c1`
1600	if [[ $firstc = M \|\| $firstc = "?" ]]
1601	then
1602	Name=`echo "$line" \| cut -c8-`
1603	extension=`echo $Name \| cut -d. -f2`
1604	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1605	then
1606	Filenames="$Filenames "$Name
1607	fi
1608	fi
1609	done < tmp_mrun
1610
1611
1612	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1613	for dateiname in $Filenames
1614	do
1615	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1616	source_list=$source_list"$dateiname "
1617	done
1618
1619	cd - > /dev/null
1620
1621
1622	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1623	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1624	# VORHANDEN
1625	elif [[ "$source_list" != "" && $restart_run != true ]]
1626	then
1627
1628	cd $source_path
1629
1630	for filename in $source_list
1631	do
1632
1633	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1634	if [[ $(print $filename \| grep -c "/") != 0 ]]
1635	then
1636	printf "\n +++ source code file: $filename"
1637	printf "\n must not contain (\"/\") "
1638	locat=source; exit
1639	fi
1640
1641	if [[ ! -f $filename ]]
1642	then
1643	printf "\n +++ source code file: $filename"
1644	printf "\n does not exist"
1645	locat=source; exit
1646	else
1647	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1648	fi
1649
1650	done
1651
1652	cd - > /dev/null
1653
1654	fi
1655
1656
1657	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1658	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1659	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1660	if [[ $restart_run != true ]]
1661	then
1662
1663	if [[ ! -f "$source_path/$mainprog" ]]
1664	then
1665	printf "\n\n +++ main program: $mainprog"
1666	printf "\n does not exist in source directory"
1667	printf "\n \"$source_path\"\n"
1668	locat=source; exit
1669	else
1670	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1671	then
1672	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1673	source_list=${mainprog}" $source_list"
1674	fi
1675	fi
1676	fi
1677
1678
1679	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1680	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1681	if [[ "$restart_run" != true ]]
1682	then
1683	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1684	if [[ ! -f $makefile ]]
1685	then
1686	printf "\n +++ file \"$makefile\" does not exist"
1687	locat=make; exit
1688	else
1689	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1690	fi
1691	fi
1692
1693
1694	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1695	if [[ $restart_run != true && "$add_source_path" != "" ]]
1696	then
1697
1698	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1699	if [[ ! -d $add_source_path ]]
1700	then
1701	printf "\n\n +++ WARNING: additional source code directory"
1702	printf "\n \"$add_source_path\" "
1703	printf "\n does not exist or is not a directory."
1704	printf "\n No source code will be used from this directory!\n"
1705	add_source_path=""
1706	sleep 3
1707	else
1708
1709	cd $add_source_path
1710	found=false
1711
1712	Names=$(ls -1 *.f90 2>&1)
1713	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1714	Names=$(ls -1 *.F90 2>&1)
1715	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1716	Names=$(ls -1 *.F 2>&1)
1717	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1718	Names=$(ls -1 *.f 2>&1)
1719	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1720	Names=$(ls -1 *.c 2>&1)
1721	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1722
1723	cd - > /dev/null
1724	cd SOURCES_FOR_RUN_$fname
1725
1726	# COPY MAKEFILE IF EXISTING
1727	if [[ -f $add_source_path/Makefile ]]
1728	then
1729	printf "\n\n *** user Makefile from directory"
1730	printf "\n \"$add_source_path\" is used \n"
1731	sleep 1
1732	cp $add_source_path/Makefile .
1733	fi
1734
1735	for dateiname in $AddFilenames
1736	do
1737	if [[ -f $dateiname ]]
1738	then
1739	printf "\n +++ source code file \"$dateiname\" found in additional"
1740	printf "\n source code directory \"$add_source_path\" "
1741	printf "\n but was also given with option \"-s\" which means that it should be taken"
1742	printf "\n from directory \"$source_path\"."
1743	locat=source; exit
1744	fi
1745
1746	cp $add_source_path/$dateiname .
1747	source_list="$source_list $dateiname"
1748
1749	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1750	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1751	then
1752	printf "\n\n +++ user file \"$dateiname\" "
1753	printf "\n is not listed in Makefile \n"
1754	locat=source; exit
1755	else
1756
1757	# Default User-Interface von der Liste entfernen, falls Datei
1758	# ein User-Interface enthaelt
1759	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1760	# then
1761	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1762	# then
1763	# rm -rf user_interface.f90
1764	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1765	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1766	# printf "\n since a user-interface is found in file"
1767	# printf "\n \"$add_source_path/$dateiname\" \n"
1768	# sleep 3
1769	# else
1770	if [[ $found = false ]]
1771	then
1772	found=true
1773	printf "\n\n *** following user file(s) added to the"
1774	printf " files to be translated:\n "
1775	fi
1776	printf "$dateiname "
1777	sleep 0.5
1778	fi
1779	done
1780	[[ $found = true ]] && printf "\n"
1781	cd - > /dev/null
1782	fi
1783	fi
1784
1785
1786	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1787	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1788	if [[ $restart_run != true && -n $package_list ]]
1789	then
1790
1791	cd $source_path
1792
1793	for package in $package_list
1794	do
1795
1796	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1797
1798	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1799	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1800	# LIEFERT
1801	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1802
1803
1804	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1805	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1806	for source_list_name in $package_source_list
1807	do
1808	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1809	then
1810
1811	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1812	ending=`echo $source_list_name \| cut -f2 -d.`
1813	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1814	then
1815	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1816	source_list="$source_list $source_list_name"
1817	fi
1818	fi
1819	done
1820	done
1821
1822	cd - > /dev/null
1823	fi
1824
1825
1826	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1827	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1828	# if [[ "$restart_run" != true ]]
1829	# then
1830	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1831	# if [[ ! -f $makefile ]]
1832	# then
1833	# printf "\n +++ file \"$makefile\" does not exist"
1834	# locat=make; exit
1835	# else
1836	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1837	# fi
1838	# fi
1839
1840	fi # do_compile=true
1841
1842
1843	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1844	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1845	if [[ $do_compile = true ]]
1846	then
1847
1848	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1849	# ZUSAMMENSETZEN
1850	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1851	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1852	then
1853	cpp_options="${cpp_options},-D__ibm=__ibm"
1854	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1855	then
1856	cpp_options="$cpp_options -D__nec"
1857	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1858	then
1859	cpp_options="$cpp_options -D__lc"
1860	else
1861	cpp_options="$cpp_options -D__$localhost"
1862	fi
1863
1864	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1865	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1866	then
1867	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1868	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1869	else
1870	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1871	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1872	fi
1873
1874	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1875	if [[ -n $package_list ]]
1876	then
1877	for package in $package_list
1878	do
1879	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1880	then
1881	if [[ $package != "dvrp_graphics+1PE" ]]
1882	then
1883	cpp_options="${cpp_options},-D__$package=__$package"
1884	else
1885	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1886	export use_seperate_pe_for_dvrp_output=true
1887	fi
1888	else
1889	if [[ $package != "dvrp_graphics+1PE" ]]
1890	then
1891	cpp_options="$cpp_options -D__$package"
1892	else
1893	cpp_options="$cpp_options -D__dvrp_graphics"
1894	export use_seperate_pe_for_dvrp_output=true
1895	fi
1896	fi
1897	done
1898	fi
1899
1900	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1901	if [[ -n $cpp_opts ]]
1902	then
1903	for popts in $cpp_opts
1904	do
1905	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1906	then
1907	cpp_options="${cpp_options},-D__$popts=__$popts"
1908	else
1909	cpp_options="$cpp_options -D__$popts"
1910	fi
1911	done
1912	fi
1913
1914	else
1915
1916
1917	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1918	if [[ $do_remote = false ]]
1919	then
1920	if [[ ! -f $executable ]]
1921	then
1922	printf "\n +++ executable file: $executable"
1923	printf "\n does not exist"
1924	locat=executable; exit
1925	fi
1926	fi
1927	fi
1928
1929
1930	# JOBMODUS FESTSTELLEN
1931	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1932	then
1933	jobmo=BATCH
1934	else
1935	jobmo=INTERACTIVE
1936	fi
1937
1938
1939	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1940	# DURCH BENUTZER ANDERWEITIG VEREINBART
1941	if [[ "$compiler_name" = "" ]]
1942	then
1943
1944	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1945	locat=compiler_name; exit
1946
1947	fi
1948
1949
1950	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1951	[[ $localhost = necriam ]] && compiler_name=mpif90
1952
1953
1954
1955	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1956	kennung=$RANDOM
1957	if [[ "$tmp_user_catalog" = "" ]]
1958	then
1959	if [[ $localhost = ibmh ]]
1960	then
1961	tmp_user_catalog=$SCRATCH
1962	elif [[ $localhost = nech ]]
1963	then
1964	tmp_user_catalog=$WRKSHR
1965	else
1966	tmp_user_catalog=/tmp
1967	fi
1968	fi
1969	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1970
1971
1972	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1973	# BESTIMMEN
1974	if [[ "$tmp_data_catalog" = "" ]]
1975	then
1976	if [[ $localhost = ibmb ]]
1977	then
1978	tmp_data_catalog=$WORK/mrun_restart_data
1979	elif [[ $localhost = nech ]]
1980	then
1981	tmp_data_catalog=$WRKSHR/mrun_restart_data
1982	else
1983	tmp_data_catalog=/tmp/mrun_restart_data
1984	fi
1985	fi
1986
1987
1988	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1989	# ERSETZEN
1990	if [[ $do_remote = false && $do_compile = true ]]
1991	then
1992	eval fopts=\"$fopts\"
1993	eval lopts=\"$lopts\"
1994	fi
1995
1996
1997
1998	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1999	fopts="$fopts $netcdf_inc $dvr_inc"
2000	lopts="$lopts $netcdf_lib $dvr_lib"
2001	ROPTS="$ropts"
2002	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lck ) && -n $numprocs ]]
2003	then
2004	XOPT="-X $numprocs"
2005	fi
2006
2007
2008
2009	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2010	# GRAMM BENOETIGT
2011	done=false
2012	while [[ $done = false ]]
2013	do
2014	cputime=$cpumax
2015	if (( $cputime == 0 ))
2016	then
2017	if [[ $do_batch = true ]]
2018	then
2019	printf "\n +++ cpu-time is undefined"
2020	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2021	printf "\n >>> "
2022	read cputime 1>/dev/null 2>&1
2023	else
2024	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2025	fi
2026	else
2027	done=true
2028	fi
2029	cpumax=$cputime
2030	done
2031
2032	(( minuten = cputime / 60 ))
2033	(( sekunden = cputime - minuten * 60 ))
2034
2035
2036	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2037	if [[ $do_batch = true ]]
2038	then
2039	done=false
2040	while [[ $done = false ]]
2041	do
2042	if (( memory == 0 ))
2043	then
2044	printf "\n +++ memory demand is undefined"
2045	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2046	printf "\n >>> "
2047	read memory 1>/dev/null 2>&1
2048	else
2049	done=true
2050	fi
2051	done
2052	fi
2053
2054
2055	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2056	if [[ $do_remote = true && -z $remote_username ]]
2057	then
2058	while [[ -z $remote_username ]]
2059	do
2060	printf "\n +++ username on remote host \"$host\" is undefined"
2061	printf "\n >>> Please type username:"
2062	printf "\n >>> "
2063	read remote_username
2064	done
2065	mc="$mc -u$remote_username"
2066	fi
2067
2068
2069	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2070	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2071	then
2072	[[ "$mpilib" = "" ]] && export mpilib=mpt
2073	fi
2074
2075
2076
2077	###########################################################################
2078	# HEADER-AUSGABE
2079	###########################################################################
2080
2081
2082	calltime=$(date)
2083	printf "\n"
2084	# [[ $silent = false ]] && clear
2085	printf "#--------------------------------------------------------------# \n"
2086	printf "\| $version$calltime \| \n"
2087	printf "\| \| \n"
2088	spalte1="called on:"; spalte2=$localhost_realname
2089	printf "\| $spalte1$spalte2 \| \n"
2090	if [[ $local_compile = false ]]
2091	then
2092	if [[ $do_remote = true ]]
2093	then
2094	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2095	else
2096	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2097	fi
2098	else
2099	spalte1="compiling test only!"; spalte2=""
2100	fi
2101	printf "\| $spalte1$spalte2 \| \n"
2102	if [[ -n $numprocs ]]
2103	then
2104	spalte1="number of PEs:"; spalte2=$numprocs
2105	printf "\| $spalte1$spalte2 \| \n"
2106	fi
2107	if [[ -n $tasks_per_node ]]
2108	then
2109	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2110	printf "\| $spalte1$spalte2 \| \n"
2111	fi
2112	if [[ $threads_per_task != 1 ]]
2113	then
2114	spalte1="threads per task:"; spalte2="$threads_per_task"
2115	printf "\| $spalte1$spalte2 \| \n"
2116	fi
2117	printf "\| \| \n"
2118	if [[ $do_compile = true ]]
2119	then
2120	spalte1=cpp-directives:; spalte2=$cpp_options
2121	printf "\| $spalte1$spalte2 \| \n"
2122	zeile=$(echo "$cpp_options" \| cut -c41-)
2123	while [[ "$zeile" != "" ]]
2124	do
2125	spalte1=""
2126	spalte2=$zeile
2127	printf "\| $spalte1$spalte2 \| \n"
2128	zeile=$(echo "$zeile" \| cut -c41-)
2129	done
2130
2131	spalte1=compiler-options:; spalte2="$fopts"
2132	printf "\| $spalte1$spalte2 \| \n"
2133	zeile=$(echo "$fopts" \| cut -c41-)
2134	while [[ "$zeile" != "" ]]
2135	do
2136	spalte1=""
2137	spalte2=$zeile
2138	printf "\| $spalte1$spalte2 \| \n"
2139	zeile=$(echo "$zeile" \| cut -c41-)
2140	done
2141
2142	spalte1=linker-options:; spalte2=$lopts
2143	printf "\| $spalte1$spalte2 \| \n"
2144	zeile=$(echo "$lopts" \| cut -c41-)
2145	while [[ "$zeile" != "" ]]
2146	do
2147	spalte1=""
2148	spalte2=$zeile
2149	printf "\| $spalte1$spalte2 \| \n"
2150	zeile=$(echo "$zeile" \| cut -c41-)
2151	done
2152
2153	spalte1="main program":; spalte2=$mainprog
2154	printf "\| $spalte1$spalte2 \| \n"
2155	else
2156	spalte1=executable:; spalte2=$executable
2157	printf "\| $spalte1$spalte2 \| \n"
2158	fi
2159	printf "\| \| \n"
2160	spalte1="base name of files":; spalte2=$fname
2161	printf "\| $spalte1$spalte2 \| \n"
2162	if [[ $fname != $afname ]]
2163	then
2164	spalte1="base name of input files":; spalte2=$afname
2165	printf "\| $spalte1$spalte2 \| \n"
2166	fi
2167	spalte1="INPUT control list":; spalte2=$input_list
2168	printf "\| $spalte1$spalte2 \| \n"
2169	spalte1="OUTPUT control list":; spalte2=$output_list
2170	printf "\| $spalte1$spalte2 \| \n"
2171
2172	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2173	then
2174	spalte1="memory demand / PE":; spalte2="$memory MB"
2175	printf "\| $spalte1$spalte2 \| \n"
2176	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2177	printf "\| $spalte1$spalte2 \| \n"
2178	fi
2179
2180	if [[ $do_compile = true ]]
2181	then
2182	printf "\| \| \n"
2183	printf "\| Files to be compiled: \| \n"
2184	zeile=$source_list
2185	while [[ "$zeile" != "" ]]
2186	do
2187	spalte3=$zeile
2188	printf "\| $spalte3 \| \n"
2189	zeile=$(echo "$zeile" \| cut -c61-)
2190	done
2191	fi
2192	printf "#--------------------------------------------------------------#"
2193
2194
2195
2196	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2197	if [[ $do_trace = true ]]
2198	then
2199	(( i = 0 ))
2200	while (( i < iin ))
2201	do
2202	(( i = i + 1 ))
2203	if (( i == 1 ))
2204	then
2205	printf "\n\n >>> INPUT-file assignments:\n"
2206	fi
2207	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2208	done
2209	(( i = 0 ))
2210	while (( i < iout ))
2211	do
2212	(( i = i + 1 ))
2213	if (( i == 1 ))
2214	then
2215	printf "\n\n >>> OUTPUT-file assignments:\n"
2216	fi
2217	printf "\n ${localout[$i]} : ${pathout[$i]}"
2218	done
2219	(( i = 0 ))
2220	while (( i < iic ))
2221	do
2222	(( i = i + 1 ))
2223	if (( i == 1 ))
2224	then
2225	printf "\n\n >>> INPUT-commands:\n"
2226	fi
2227	printf "\n ${in_command[$i]}"
2228	done
2229	(( i = 0 ))
2230	while (( i < ioc ))
2231	do
2232	(( i = i + 1 ))
2233	if (( i == 1 ))
2234	then
2235	printf "\n\n >>> OUTPUT-commands:\n"
2236	fi
2237	printf "\n ${out_command[$i]}"
2238	done
2239	fi
2240
2241
2242	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2243	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2244	then
2245	antwort=dummy
2246	printf "\n\n"
2247	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2248	do
2249	printf " >>> everything o.k. (y/n) ? "
2250	read antwort
2251	done
2252	if [[ $antwort = n \|\| $antwort = N ]]
2253	then
2254	locat=user_abort; (( iec = 0 )); exit
2255	fi
2256	if [[ $do_batch = true ]]
2257	then
2258	printf " >>> batch-job will be created and submitted"
2259	else
2260	if [[ $local_compile = false ]]
2261	then
2262	printf " >>> MRUN will now continue to execute on this machine"
2263	else
2264	printf " >>> a test compilation will now be carried out on this machine"
2265	fi
2266	fi
2267	fi
2268
2269
2270
2271
2272	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2273	# CHENDE AKTIONEN DURCHGEFUEHRT
2274	if [[ $do_batch = false ]]
2275	then
2276
2277
2278	# TEMPORAEREN KATALOG ERZEUGEN
2279	mkdir -p $TEMPDIR
2280	chmod go+rx $TEMPDIR
2281	tmpcreate=true
2282
2283
2284	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2285	# TEMPORAERES VERZEICHNIS KOPIEREN
2286	if [[ $do_compile = true ]]
2287	then
2288
2289	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2290	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2291	if [[ $localhost = nech ]]
2292	then
2293	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2294	if mkdir -p $TEMPDIR_COMPILE
2295	then
2296	printf "\n *** \"$TEMPDIR_COMPILE\" "
2297	printf "\n is generated as temporary directory for cross compiling\n"
2298	else
2299	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2300	printf "\n needed for cross compilation failed"
2301	locat=compile
2302	exit
2303	fi
2304	else
2305	TEMPDIR_COMPILE=$TEMPDIR
2306	fi
2307
2308
2309	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2310	line=""
2311	grep "%depository_path" $config_file > tmp_mrun
2312	while read line
2313	do
2314	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2315	then
2316	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2317	then
2318	global_depository_path=`echo $line \| cut -d" " -s -f2`
2319	fi
2320	fi
2321	done < tmp_mrun
2322
2323	line=""
2324	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2325	while read line
2326	do
2327	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2328	then
2329	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2330	then
2331	local_depository_path=`echo $line \| cut -d" " -s -f2`
2332	fi
2333	fi
2334	done < tmp_mrun
2335
2336	if [[ "$local_depository_path" = "" ]]
2337	then
2338	if [[ "$global_depository_path" != "" ]]
2339	then
2340	local_depository_path=$global_depository_path
2341	else
2342	printf "\n\n +++ no depository path found in configuration file"
2343	printf "\n for local host \"$localhost\" "
2344	printf "\n please set \"\%depository_path\" in configuration file\n"
2345	locat=config_file; exit
2346	fi
2347	fi
2348	eval local_depository_path=$local_depository_path
2349	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2350	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2351
2352
2353	basename=`print $mainprog \| cut -f1 -d"."`
2354	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2355	if [[ ! -f $make_depository ]]
2356	then
2357	printf "\n"
2358	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2359	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2360	else
2361	cp $make_depository $TEMPDIR_COMPILE
2362	cd $TEMPDIR_COMPILE
2363	tar -xf $make_depository > /dev/null 2>&1
2364	cd - > /dev/null
2365	fi
2366
2367	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2368
2369	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2370	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2371	# MAKEFILE EINTRAGEN
2372	# cd $TEMPDIR_COMPILE
2373	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2374	# if [[ "$interface_file" != "" ]]
2375	# then
2376	# interface_file=`echo $interface_file \| cut -d"." -f1`
2377	# mv Makefile Makefile_old
2378	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2379	# fi
2380	# cd - > /dev/null
2381	else
2382	cp $executable ${TEMPDIR}/a.out
2383	fi
2384
2385
2386	# WECHSEL IN TEMPORAEREN KATALOG
2387	cd $TEMPDIR
2388	printf "\n *** changed to temporary directory: $TEMPDIR"
2389
2390
2391	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2392	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2393	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2394	# ERMITTELN
2395	(( i = 0 ))
2396	while (( i < iout ))
2397	do
2398	(( i = i + 1 ))
2399	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2400	then
2401	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2402	else
2403	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2404	fi
2405	done
2406
2407
2408	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2409	if [[ $do_compile = true ]]
2410	then
2411
2412
2413	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2414	printf "\n\n\n *** compilation starts \n$striche\n"
2415	printf " *** compilation with make using following options:\n"
2416	printf " make depository: $make_depository"
2417	printf " compilername: $compiler_name\n"
2418	printf " options: $fopts\n"
2419	printf " preprocessor-directives: $cpp_options \n"
2420	printf " linker-options: $lopts \n"
2421	printf " source code files: $source_list \n"
2422
2423	if [[ $localhost = nech ]]
2424	then
2425	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2426	cp $TEMPDIR_COMPILE/a.out .
2427	[[ $? != 0 ]] && compile_error=true
2428	rm -rf $TEMPDIR_COMPILE
2429	elif [[ $localhost = ibmh ]]
2430	then
2431	printf " compiler is called via ssh on \"plogin1\" \n"
2432	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2433	[[ ! -f a.out ]] && compile_error=true
2434	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2435	elif [[ $localhost = lcsgib ]]
2436	then
2437	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
2438	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2439	[[ ! -f a.out ]] && compile_error=true
2440	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2441	elif [[ $localhost = lcsgih ]]
2442	then
2443	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
2444	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2445	[[ ! -f a.out ]] && compile_error=true
2446	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2447	else
2448	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2449	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2450	fi
2451
2452	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2453	then
2454	printf "\n +++ error occured while compiling or linking"
2455	locat=compile
2456
2457	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2458	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2459	# then
2460	exit
2461	# else
2462	# locat=normal
2463	# fi
2464	else
2465	printf "$striche\n *** compilation finished \n"
2466	fi
2467	fi
2468
2469
2470	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2471	if [[ $local_compile = true ]]
2472	then
2473	cd $HOME
2474	rm -rf $TEMPDIR
2475	locat=local_compile; exit
2476	fi
2477
2478
2479	# BEREITSTELLEN DER INPUT-DATEIEN
2480	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2481	(( i = 0 ))
2482	while (( i < iin ))
2483	do
2484	(( i = i + 1 ))
2485	if (( i == 1 ))
2486	then
2487	printf "\n\n *** providing INPUT-files:\n$striche"
2488	fi
2489
2490
2491	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2492	if [[ "${transin[$i]}" = unavailable ]]
2493	then
2494	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2495	then
2496	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2497	printf "\n is not available!"
2498	else
2499	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2500	printf "\n is not available!"
2501	fi
2502	continue
2503	fi
2504
2505	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2506	files_for_pes=false; datentyp=file
2507	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2508	then
2509	files_for_pes=true; datentyp=directory
2510	actionin[$i]=""
2511	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2512	then
2513	actionin[$i]=""
2514	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2515	then
2516	files_for_pes=true; datentyp=directory
2517	actionin[$i]="ar"
2518	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2519	then
2520	actionin[$i]="ar"
2521	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2522	then
2523	files_for_pes=true; datentyp=directory
2524	actionin[$i]="fl"
2525	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2526	then
2527	actionin[$i]="fl"
2528	fi
2529
2530	if [[ $files_for_pes = true ]]
2531	then
2532	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2533	else
2534	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2535	fi
2536
2537	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2538	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2539	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2540	# SERVER ZU HOLEN
2541	if [[ "${actionin[$i]}" = fl ]]
2542	then
2543	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2544	if [[ $files_for_pes = false ]]
2545	then
2546	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2547	then
2548	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2549	got_tmp[$i]=true
2550	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2551	then
2552	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2553	printf "\n *** trying to use backup copy in \"$WORK\" "
2554	cp $WORK/${frelin[$i]} ${localin[$i]}
2555	else
2556	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2557	printf "\n or \"$tmp_data_catalog\" does not exist!"
2558	printf "\n *** trying to get copy from archive"
2559	actionin[$i]=ar
2560	fi
2561	else
2562	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2563	then
2564	mkdir ${localin[$i]}
2565	cd $tmp_data_catalog/${frelin[$i]}
2566	for file in $(ls *)
2567	do
2568	ln $file $TEMPDIR/${localin[$i]}
2569	done
2570	cd $TEMPDIR
2571	got_tmp[$i]=true
2572	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2573	then
2574	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2575	printf "\n *** trying to use backup copy in \"$WORK\" "
2576	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2577	else
2578	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2579	printf "\n or \"$tmp_data_catalog\" does not exist!"
2580	printf "\n *** trying to get copy from archive"
2581	actionin[$i]=ar
2582	fi
2583	fi
2584	fi
2585
2586
2587	# DATEI LIEGT AUF ARCHIV-SERVER
2588	if [[ "${actionin[$i]}" = ar ]]
2589	then
2590
2591	if [[ $files_for_pes = false ]]
2592	then
2593	printf "\n file will be restored from archive-system ($archive_system)!"
2594	else
2595	printf "\n directory will be restored from archive-system ($archive_system)!"
2596	fi
2597
2598	file_restored=false
2599
2600	if [[ $archive_system = asterix ]]
2601	then
2602	do_stagein=true
2603	(( stagein_anz = 0 ))
2604	while [[ $do_stagein = true ]]
2605	do
2606	if [[ $files_for_pes = false ]]
2607	then
2608	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2609	else
2610	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2611	fi
2612	cat STAGEIN_OUTPUT
2613	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2614	then
2615	file_restored=true
2616	do_stagein=false
2617	else
2618	(( stagein_anz = stagein_anz + 1 ))
2619	if (( stagein_anz == 10 ))
2620	then
2621	printf "\n +++ stagein stoped after 10 tries"
2622	locat=stage
2623	exit
2624	fi
2625	printf "\n +++ restoring from archive failed, trying again:"
2626	sleep 900
2627	fi
2628	done
2629	elif [[ $archive_system = DMF ]]
2630	then
2631	if [[ $files_for_pes = false ]]
2632	then
2633	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2634	locat=DMF
2635	exit
2636	else
2637	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2638	cp -r $ARCHIVE/${frelin[$i]} $PWD
2639	file_restored=true
2640	fi
2641	elif [[ $archive_system = tivoli ]]
2642	then
2643	if [[ $files_for_pes = false ]]
2644	then
2645	if [[ $localhost = lcsgih ]]
2646	then
2647	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2648	else
2649	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2650	fi
2651	else
2652	(( inode = 0 ))
2653	while (( inode < nodes ))
2654	do
2655	if [[ $localhost = lcsgih ]]
2656	then
2657	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2658	else
2659	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2660	fi
2661	(( inode = inode + 1 ))
2662	done
2663	fi
2664	file_restored=true
2665	elif [[ $archive_system = ut ]]
2666	then
2667	if [[ $files_for_pes = false ]]
2668	then
2669	cp $UT/${frelin[$i]} .
2670	else
2671	(( inode = 0 ))
2672	while (( inode < nodes ))
2673	do
2674	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2675	(( inode = inode + 1 ))
2676	done
2677	fi
2678	file_restored=true
2679	else
2680	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2681	locat=rearchive
2682	exit
2683	fi
2684
2685	if [[ $file_restored = true ]]
2686	then
2687
2688	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2689	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2690	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2691	if [[ $files_for_pes = false ]]
2692	then
2693	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2694	else
2695	mkdir $tmp_data_catalog/${frelin[$i]}
2696	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2697	fi
2698	got_tmp[$i]=true
2699
2700	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2701	mv ${frelin[$i]} ${localin[$i]}
2702
2703	fi
2704	fi
2705
2706
2707	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2708	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2709	then
2710
2711	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2712	then
2713
2714	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2715	printf "\n file will be provided for $numprocs processors"
2716	mkdir ${localin[$i]}
2717	ival=$numprocs
2718	(( ii = 0 ))
2719	while (( ii <= ival-1 ))
2720	do
2721	if (( ii < 10 ))
2722	then
2723	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2724	elif (( ii < 100 ))
2725	then
2726	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2727	elif (( ii < 1000 ))
2728	then
2729	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2730	else
2731	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2732	fi
2733	(( ii = ii + 1 ))
2734	done
2735
2736	else
2737
2738	if [[ $files_for_pes = true ]]
2739	then
2740
2741	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2742	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2743	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2744	# PER MOVE UMBENANNT WERDEN
2745	printf "\n providing $numprocs files for the respective processors"
2746	mkdir ${localin[$i]}
2747	if [[ $link_local_input = true ]]
2748	then
2749	printf " using ln -f\n"
2750	cd ${absnamein[$i]}
2751	for file in $(ls *)
2752	do
2753	ln -f $file ${localin[$i]}
2754	done
2755	cd $TEMPDIR
2756	fi
2757	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2758	if [[ ! -f "${localin[$i]}/_0000" ]]
2759	then
2760	if [[ $link_local_input = true ]]
2761	then
2762	printf " ln failed for .../_0000, using cp...\n"
2763	fi
2764	cp -r ${absnamein[$i]}/* ${localin[$i]}
2765	fi
2766
2767	else
2768	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2769	if [[ $link_local_input = true ]]
2770	then
2771	printf " using ln -f\n"
2772	ln -f ${absnamein[$i]} ${localin[$i]}
2773	fi
2774	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2775	if [[ ! -f "${localin[$i]}" ]]
2776	then
2777	if [[ $link_local_input = true ]]
2778	then
2779	printf " ln failed, using cp...\n"
2780	fi
2781	cp ${absnamein[$i]} ${localin[$i]}
2782	fi
2783	fi
2784	fi
2785	fi
2786
2787	done
2788	if (( i != 0 ))
2789	then
2790	printf "\n$striche\n *** all INPUT-files provided \n"
2791	fi
2792
2793
2794	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2795	(( i = 0 ))
2796	while (( i < iic ))
2797	do
2798	(( i = i + 1 ))
2799	if (( i == 1 ))
2800	then
2801	printf "\n\n *** execution of INPUT-commands:\n$striche"
2802	fi
2803	printf "\n >>> ${in_command[$i]}"
2804	eval ${in_command[$i]}
2805	if (( i == iic ))
2806	then
2807	printf "\n$striche\n"
2808	fi
2809	done
2810
2811
2812	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2813	cpurest=${cpumax}.
2814
2815
2816	# START DVR STREAMING SERVER
2817	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2818	then
2819	if [[ "$dvr_server" != "" ]]
2820	then
2821
2822	printf "\n\n *** preparing the dvr streaming server configuration file"
2823
2824	# Check, if a dvr server is already running
2825	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2826	if [[ "$running_dvrserver_id" != "" ]]
2827	then
2828
2829	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2830	printf "\n This server is used instead starting a new one!"
2831	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2832
2833	else
2834
2835	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2836	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2837	then
2838	cp ${PALM_BIN}/.dvrserver.config .
2839
2840	# Entering the BASEDIR, UID and GID into this file
2841	user_id=`id -u`
2842	group_id=`id -g`
2843	# & is needed as seperator, because TEMPDIR contains /
2844	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2845	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2846	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2847	mv .dvrserver.3 .dvrserver.config
2848	rm .dvrserver.1 .dvrserver.2
2849
2850	# Start dvr server in background, get his id and print on terminal
2851	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2852	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2853	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2854	local_dvrserver_running=.TRUE.
2855	else
2856	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2857	printf "\n \"$PALM_BIN\" "
2858	locat=dvr
2859	exit
2860	fi
2861
2862	fi
2863
2864	else
2865	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2866	fi
2867	fi
2868
2869
2870	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2871	# LESEN VON PALM)
2872	cat > ENVPAR << %%END%%
2873	&envpar run_identifier = '$fname', host = '$localhost',
2874	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2875	maximum_cpu_time_allowed = ${cpumax}.,
2876	revision = '$global_revision',
2877	local_dvrserver_running = $local_dvrserver_running /
2878
2879	%%END%%
2880
2881
2882	# PROGRAMMSTART
2883	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2884	PATH=$PATH:$TEMPDIR
2885
2886	# MPI debug option (argument checking, slows down execution due to increased latency)
2887	if [[ "$mpi_debug" = true ]]
2888	then
2889	export MPI_CHECK_ARGS=1
2890	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
2891	fi
2892
2893	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2894	then
2895	if [[ "$ENVIRONMENT" = BATCH ]]
2896	then
2897	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2898	then
2899	printf "\n +++ debug is allowed in interactive mode only"
2900	locat=debug
2901	exit
2902	fi
2903	fi
2904	if [[ $localhost = decalpha ]]
2905	then
2906	dxladebug a.out
2907	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2908	then
2909
2910	# SETUP THE IBM MPI ENVIRONMENT
2911	export MP_SHARED_MEMORY=yes
2912	export AIXTHREADS_SCOPE=S
2913	export OMP_NUM_THREADS=$threads_per_task
2914	export AUTHSTATE=files
2915	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2916
2917	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2918	export MP_ADAPTER_USE=shared
2919	export MP_CPU_USE=multiple
2920	export MP_TIMEOUT=1200
2921
2922	unset MP_TASK_AFFINITY
2923
2924	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2925	#(( ii = 1 ))
2926	#while (( ii <= $numprocs ))
2927	#do
2928	# echo $localhost_realname >> hostfile
2929	# (( ii = ii + 1 ))
2930	#done
2931	#export MP_HOSTFILE=hostfile
2932
2933	if [[ "$LOADLBATCH" = yes ]]
2934	then
2935	totalview poe a.out $ROPTS
2936	else
2937	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2938	export TVDSVRLAUNCHCMD=ssh
2939	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2940	fi
2941	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
2942	then
2943	# CURRENTLY NO DEBUGGER ON LCSGI
2944	if [[ $run_coupled_model = true ]]
2945	then
2946	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
2947	locat=debug
2948	exit
2949	else
2950	echo "no_coupling" > runfile_atmos
2951	fi
2952	(( ii = $numprocs / $threads_per_task ))
2953	export OMP_NUM_THREADS=$threads_per_task
2954	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
2955	if [[ $threads_per_task != 1 ]]
2956	then
2957	printf "\n threads per task: $threads_per_task"
2958	fi
2959	printf "\n\n"
2960	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
2961	then
2962	# export MPI_LAUNCH_TIMEOUT=360
2963	if [[ "$totalview" = true ]]
2964	then
2965	printf "\n running totalview debugger"
2966	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
2967	else
2968	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
2969	fi
2970	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
2971	then
2972	# ulimit -s 300000 # A too large stack size causes problems
2973	# export MV2_NUM_PORTS=2
2974	# export MV2_CPU_MAPPING=0:1:2:3
2975	if [[ "$totalview" = true ]]
2976	then
2977	printf "\n running totalview debugger"
2978	mpiexec -tv ./a.out $ROPTS < runfile_atmos
2979	else
2980	mpiexec ./a.out $ROPTS < runfile_atmos
2981	fi
2982	fi
2983	else
2984	printf "\n +++ no debug available on \"$localhost\" "
2985	printf "\n or not implemented in mrun so far"
2986	locat=debug
2987	exit
2988	fi
2989	else
2990	if [[ -n $numprocs ]]
2991	then
2992	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2993	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2994	then
2995	# SETUP THE IBM MPI ENVIRONMENT
2996	if [[ $host != ibmh ]]
2997	then
2998	export MP_SHARED_MEMORY=yes
2999	export AIXTHREAD_SCOPE=S
3000	export OMP_NUM_THREADS=$threads_per_task
3001	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3002	export AUTHSTATE=files
3003	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3004	# export MP_PRINTENV=yes
3005
3006	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3007	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3008	export MP_WAIT_MODE=poll
3009	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3010	fi
3011	if [[ "$LOADLBATCH" = yes ]]
3012	then
3013	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3014	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3015	then
3016	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3017	else
3018	if [[ $run_coupled_model = false ]]
3019	then
3020	if [[ "$ocean_file_appendix" = true ]]
3021	then
3022	echo "precursor_ocean" > runfile_atmos
3023	else
3024	echo "precursor_atmos" > runfile_atmos
3025	fi
3026	else
3027	(( iia = $numprocs_atmos / $threads_per_task ))
3028	(( iio = $numprocs_ocean / $threads_per_task ))
3029	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3030	printf "\n using $coupled_mode coupling"
3031	printf "\n\n"
3032	echo "coupled_run $iia $iio" > runfile_atmos
3033	fi
3034	poe ./a.out $ROPTS < runfile_atmos
3035	fi
3036	else
3037	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
3038	then
3039	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3040	elif [[ $localhost = ibmy ]]
3041	then
3042	if [[ -f $hostfile ]]
3043	then
3044	cp $hostfile hostfile
3045	else
3046	(( ii = 1 ))
3047	while (( ii <= $numprocs ))
3048	do
3049	echo $localhost_realname >> hostfile
3050	(( ii = ii + 1 ))
3051	done
3052	fi
3053	export MP_HOSTFILE=hostfile
3054	if [[ $run_coupled_model = false ]]
3055	then
3056	if [[ "$ocean_file_appendix" = true ]]
3057	then
3058	echo "precursor_ocean" > runfile_atmos
3059	else
3060	echo "precursor_atmos" > runfile_atmos
3061	fi
3062	else
3063	(( iia = $numprocs_atmos / $threads_per_task ))
3064	(( iio = $numprocs_ocean / $threads_per_task ))
3065	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3066	printf "\n using $coupled_mode coupling"
3067	printf "\n\n"
3068	echo "coupled_run $iia $iio" > runfile_atmos
3069	fi
3070	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3071
3072	else
3073	if [[ "$host_file" = "" ]]
3074	then
3075	printf "\n +++ no hostfile given in configuration file"
3076	locat=config_file
3077	exit
3078	else
3079	eval host_file=$host_file
3080	fi
3081	export MP_HOSTFILE=$host_file
3082	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3083	fi
3084	fi
3085	elif [[ $host = nech \|\| $host = necriam ]]
3086	then
3087	(( ii = nodes ))
3088	if [[ $ii = 1 ]]
3089	then
3090	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3091	export MPIPROGINF=YES
3092	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3093	echo "*** execution on single node with mpirun"
3094	mpirun -np $numprocs ./a.out $ROPTS
3095	else
3096	(( i = 0 ))
3097	while (( i < ii ))
3098	do
3099	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3100	(( i = i + 1 ))
3101	done
3102
3103	echo "#!/bin/sh" > mpi_exec_shell
3104	echo " " >> mpi_exec_shell
3105	echo "set -u" >> mpi_exec_shell
3106	echo "F_ERRCNT=0" >> mpi_exec_shell
3107	echo "MPIPROGINV=YES" >> mpi_exec_shell
3108	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3109	echo "cpurest=$cpurest" >> mpi_exec_shell
3110	echo "fname=$fname" >> mpi_exec_shell
3111	echo "localhost=$localhost" >> mpi_exec_shell
3112	echo "return_addres=$return_addres" >> mpi_exec_shell
3113	echo "return_username=$return_username" >> mpi_exec_shell
3114	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3115	echo "write_binary=$write_binary" >> mpi_exec_shell
3116	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3117	echo " " >> mpi_exec_shell
3118	echo "export F_ERRCNT" >> mpi_exec_shell
3119	echo "export MPIPROGINV" >> mpi_exec_shell
3120	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3121	echo "export cpurest" >> mpi_exec_shell
3122	echo "export fname" >> mpi_exec_shell
3123	echo "export localhost" >> mpi_exec_shell
3124	echo "export return_addres" >> mpi_exec_shell
3125	echo "export return_username" >> mpi_exec_shell
3126	echo "export tasks_per_node" >> mpi_exec_shell
3127	echo "export write_binary" >> mpi_exec_shell
3128	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3129	echo " " >> mpi_exec_shell
3130	echo "exec ./a.out" >> mpi_exec_shell
3131
3132	chmod u+x mpi_exec_shell
3133	export MPIPROGINF=YES
3134	mpirun -f multinode_config &
3135	wait
3136
3137	fi
3138	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
3139	then
3140
3141	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3142	# DOES NOT EXIST
3143	if [[ $host != lcsgih && $host != lcsgib ]]
3144	then
3145	if [[ -f $hostfile ]]
3146	then
3147	cp $hostfile hostfile
3148	else
3149	(( ii = 1 ))
3150	while (( ii <= $numprocs / $threads_per_task ))
3151	do
3152	echo $localhost_realname >> hostfile
3153	(( ii = ii + 1 ))
3154	done
3155	fi
3156	eval zeile=\"`head -n $ii hostfile`\"
3157	printf "\n *** running on: $zeile"
3158	fi
3159
3160	(( ii = $numprocs / $threads_per_task ))
3161	export OMP_NUM_THREADS=$threads_per_task
3162	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3163	if [[ $threads_per_task != 1 ]]
3164	then
3165	# increase stack size to unlimited, because large runs
3166	# may abort otherwise
3167	ulimit -Ss unlimited
3168	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3169	fi
3170	if [[ $run_coupled_model = false ]]
3171	then
3172	if [[ "$ocean_file_appendix" = true ]]
3173	then
3174	echo "precursor_ocean" > runfile_atmos
3175	else
3176	echo "precursor_atmos" > runfile_atmos
3177	fi
3178	printf "\n\n"
3179	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3180	then
3181	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3182	then
3183	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3184	# export MPI_DSM_DISTRIBUTE=1
3185	# MPI_DSM_CPULIST: pin MPI processes to cores
3186	if [[ $use_openmp = false ]]
3187	then
3188	if [[ "$sgi_feature" = ice2 ]]
3189	then
3190	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3191	else
3192	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3193	fi
3194	fi
3195	# MPI_IB_RAILS: use both IB rails on ICE2
3196	export MPI_BUFS_PER_HOST=512
3197	export MPI_IB_RAILS=2
3198	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3199	export MPI_CONNECTIONS_THRESHOLD=8192
3200	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3201	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3202
3203	# next is test for openmp usage
3204	# mpiexec -n $ii -pernode ./a.out $ROPTS < runfile_atmos
3205	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3206	then
3207	export MV2_NUM_PORTS=2
3208	# The default setting of MV2_CPU_MAPPING gives best results
3209	# export MV2_ENABLE_AFFINITY=1
3210	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3211	# if [[ "$sgi_feature" = ice2 ]]
3212	# then
3213	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3214	# else
3215	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3216	# fi
3217	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3218	if [[ $threads_per_task != 1 ]]
3219	then
3220	mpiexec -npernode 1 ./a.out $ROPTS < runfile_atmos
3221	else
3222	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
3223	fi
3224	fi
3225	elif [[ $host = lcxt4 ]]
3226	then
3227	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3228	else
3229	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3230	fi
3231	else
3232
3233	# currently there is no full MPI-2 support on ICE and XT4
3234	(( iia = $numprocs_atmos / $threads_per_task ))
3235	(( iio = $numprocs_ocean / $threads_per_task ))
3236	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3237	printf "\n using $coupled_mode coupling"
3238	printf "\n\n"
3239
3240	if [[ $coupled_mode = "mpi2" ]]
3241	then
3242	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3243	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3244	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3245	then
3246
3247	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3248	then
3249	# export MPI_LAUNCH_TIMEOUT=360
3250	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3251	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3252	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3253	then
3254	# ulimit -s 300000 # A too large stack size causes problems
3255	# export MV2_NUM_PORTS=2
3256	# export MV2_CPU_MAPPING=0:1:2:3
3257	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3258	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3259	fi
3260
3261	elif [[ $host = lcxt4 ]]
3262	then
3263
3264	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3265	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3266
3267	else
3268	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3269	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3270	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3271	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3272	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3273	fi
3274	wait
3275
3276	else
3277
3278	echo "coupled_run $iia $iio" > runfile_atmos
3279	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3280	then
3281
3282	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3283	then
3284	# export MPI_LAUNCH_TIMEOUT=360
3285	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3286	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3287	then
3288	# ulimit -s 300000 # A too large stack size causes problems
3289	# export MV2_NUM_PORTS=2
3290	# export MV2_CPU_MAPPING=0:1:2:3
3291	mpiexec ./a.out $ROPTS < runfile_atmos
3292	fi
3293
3294	elif [[ $host = lcxt4 ]]
3295	then
3296
3297	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3298
3299	elif [[ $host = lck ]]
3300	then
3301	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3302	fi
3303	wait
3304	fi
3305
3306	# if [[ $scirocco = true ]]
3307	# then
3308	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
3309	# else
3310	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
3311	# fi
3312	fi
3313	elif [[ $host = decalpha ]]
3314	then
3315	dmpirun -np $numprocs a.out $ROPTS
3316	elif [[ $host = lctit ]]
3317	then
3318	export runfile=runfile.$kennung
3319
3320	echo "cd $PWD" > $runfile
3321	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
3322	echo "export cpurest=$cpurest" >> $runfile
3323	echo "export fname=$fname" >> $runfile
3324	echo "export localhost=$localhost" >> $runfile
3325	echo "export return_addres=$return_addres" >> $runfile
3326	echo "export return_username=$return_username" >> $runfile
3327	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3328	echo "export write_binary=$write_binary" >> $runfile
3329	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3330	echo "./a.out" >> $runfile
3331	chmod u+x $runfile
3332
3333	if [[ "$QUEUE" = interactive ]]
3334	then
3335	mpirun -np $numprocs a.out $ROPTS
3336	else
3337	(( mem_tsubame = $memory / 1024.0 ))
3338	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3339	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3340	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3341	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3342	fi
3343
3344	rm $runfile
3345	else
3346	mpprun -n $numprocs a.out $ROPTS
3347	fi
3348	[[ $? != 0 ]] && execution_error=true
3349
3350
3351	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3352	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3353	then
3354	apprentice
3355	fi
3356	else
3357	a.out $ROPTS
3358	fi
3359	fi
3360	if [[ $? != 0 \|\| $execution_error = true ]]
3361	then
3362
3363	# ABBRUCH BEI LAUFZEITFEHLER
3364	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3365	printf "\n +++ runtime error occured"
3366	locat=execution
3367	exit
3368	else
3369	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3370	printf "\n$striche\n *** execution finished \n"
3371
3372	# Stop the dvr streaming server and process the dvr output in order
3373	# to create dvrs- and html-files containing all streams
3374	if [[ "$dvrserver_id" != "" ]]
3375	then
3376	kill $dvrserver_id
3377	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3378
3379	# If there is a directory, data have been output by the
3380	# streaming server. Otherwise, user has chosen dvrp_output=local
3381	if [[ -d DATA_DVR ]]
3382	then
3383
3384	# Add the current dvr configuration file to the dvr output
3385	# directory
3386	cp .dvrserver.config DATA_DVR
3387
3388	# Process the dvr output (option -s for also generating
3389	# sequence mode data)
3390	process_dvr_output -d DATA_DVR -f $fname -s
3391
3392	else
3393
3394	# Process the local output
3395	process_dvr_output -l -d DATA_DVR -f $fname
3396
3397	fi
3398
3399	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3400	then
3401
3402	# Process dvr output generated in local mode (dvrp_output=local)
3403	process_dvr_output -l -d DATA_DVR -f $fname
3404
3405	fi
3406	fi
3407
3408
3409
3410	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3411	(( i = 0 ))
3412	while (( i < ioc ))
3413	do
3414	(( i = i + 1 ))
3415	if (( i == 1 ))
3416	then
3417	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3418	fi
3419	printf "\n >>> ${out_command[$i]}"
3420	eval ${out_command[$i]}
3421	if (( i == ioc ))
3422	then
3423	printf "\n$striche\n"
3424	fi
3425	done
3426
3427
3428	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3429	if [[ $do_trace = true ]]
3430	then
3431	printf "\n\n"
3432	ls -al
3433	fi
3434
3435
3436
3437	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3438	(( i = 0 ))
3439	while (( i < iout ))
3440	do
3441	(( i = i + 1 ))
3442	if (( i == 1 ))
3443	then
3444	printf "\n\n *** saving OUTPUT-files:\n$striche"
3445	fi
3446
3447	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3448	files_for_pes=false; filetyp=file
3449	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3450	then
3451	files_for_pes=true; filetyp=directory
3452	actionout[$i]=""
3453	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3454	then
3455	actionout[$i]=""
3456	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3457	then
3458	files_for_pes=true; filetyp=directory
3459	actionout[$i]="ar"
3460	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3461	then
3462	actionout[$i]="ar"
3463	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3464	then
3465	files_for_pes=true; filetyp=directory
3466	actionout[$i]="fl"
3467	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3468	then
3469	actionout[$i]="fl"
3470	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3471	then
3472	files_for_pes=true; filetyp=directory
3473	actionout[$i]="tr"
3474	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3475	then
3476	actionout[$i]="tr"
3477	fi
3478
3479	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3480	then
3481	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3482	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3483	then
3484	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3485	else
3486
3487
3488	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3489	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3490	# REMOTE-RECHNUNGEN
3491	if [[ "${actionout[$i]}" = tr ]]
3492	then
3493	if [[ $localhost != $fromhost ]]
3494	then
3495	if [[ $files_for_pes = false ]]
3496	then
3497	cps=""
3498	cst=""
3499	else
3500	cps=-c
3501	cst="/"
3502	fi
3503	if [[ $localhost = ibmb \|\| $localhost = nech ]]
3504	then
3505
3506	# TRANSFER IN EIGENSTAENDIGEM JOB
3507	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3508	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3509	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3510	if [[ $files_for_pes = false ]]
3511	then
3512	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3513	else
3514	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3515	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3516	fi
3517
3518	echo "set -x" > transfer_${localout[$i]}
3519	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3520
3521	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3522	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3523	printf "\n or higher cycle\n"
3524	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3525
3526	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3527
3528	if [[ $localhost = nech ]]
3529	then
3530	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3531	else
3532	if [[ "$LOGNAME" = b323013 ]]
3533	then
3534	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3535	else
3536	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3537	fi
3538	fi
3539
3540	else
3541
3542	# TRANSFER INNERHALB DIESES JOBS
3543	transfer_failed=false
3544	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3545	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3546	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3547	[[ $? != 0 ]] && transfer_failed=true
3548
3549	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3550	# LOKALER MASCHINE ANLEGEN
3551	if [[ $transfer_failed = true ]]
3552	then
3553	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3554	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3555
3556	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3557	# ANLEGEN.
3558	eval local_catalog=${pathout[$i]}
3559	if [[ ! -d $local_catalog ]]
3560	then
3561	printf " *** local directory does not exist. Trying to create:\n"
3562	printf " $local_catalog \n"
3563	mkdir -p $local_catalog
3564	fi
3565	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3566	transfer_problems=true
3567	fi
3568	fi
3569	else
3570
3571	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3572	actionout[$i]=""
3573	fi
3574	fi
3575
3576
3577	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3578	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3579	# REMOTE-RECHNUNGEN
3580	if [[ "${actionout[$i]}" = tra ]]
3581	then
3582	if [[ $localhost != $fromhost ]]
3583	then
3584	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3585	then
3586
3587	# TRANSFER IN EIGENSTAENDIGEM JOB
3588	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3589	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3590	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3591	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3592
3593	echo "set -x" > transfer_${localout[$i]}
3594	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3595
3596	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3597	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3598	printf "\n or higher cycle\n"
3599	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3600
3601	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3602
3603	if [[ $localhost = nech ]]
3604	then
3605	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3606	else
3607	if [[ $LOGNAME = b323013 ]]
3608	then
3609	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3610	else
3611	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3612	fi
3613	fi
3614
3615	else
3616
3617	# TRANSFER INNERHALB DIESES JOBS
3618	transfer_failed=false
3619	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3620	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3621	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3622	[[ $? != 0 ]] && transfer_failed=true
3623
3624	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3625	# LOKALER MASCHINE ANLEGEN
3626	if [[ $transfer_failed = true ]]
3627	then
3628	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3629	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3630
3631	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3632	# ANLEGEN
3633	eval local_catalog=${pathout[$i]}
3634	if [[ ! -d $local_catalog ]]
3635	then
3636	printf " *** local directory does not exist. Trying to create:\n"
3637	printf " $local_catalog \n"
3638	mkdir -p $local_catalog
3639	fi
3640
3641	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3642	transfer_problems=true
3643	fi
3644	fi
3645	else
3646
3647	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3648	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3649	actionout[$i]=a
3650	fi
3651	fi
3652
3653
3654	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3655	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3656	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3657	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3658	if [[ "${actionout[$i]}" = fl ]]
3659	then
3660	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3661	chmod g+rx $tmp_data_catalog
3662	if [[ $files_for_pes = false ]]
3663	then
3664	printf "\n >>> OUTPUT: ${localout[$i]} to"
3665	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3666	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3667	else
3668	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3669	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3670	mkdir $tmp_data_catalog/${frelout[$i]}
3671	cd ${localout[$i]}
3672	for file in $(ls *)
3673	do
3674	ln -f $file $tmp_data_catalog/${frelout[$i]}
3675	done
3676	cd $TEMPDIR
3677	fi
3678
3679
3680	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3681	if [[ $store_on_archive_system = true ]]
3682	then
3683
3684	if [[ $archive_system = asterix ]]
3685	then
3686	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3687	if [[ $files_for_pes = false ]]
3688	then
3689	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3690	else
3691	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3692	fi
3693	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3694	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3695	echo "then" >> archive_${frelout[$i]}
3696	echo " do_stageout=false" >> archive_${frelout[$i]}
3697	echo "else" >> archive_${frelout[$i]}
3698	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3699	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3700	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3701	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3702	if [[ $files_for_pes = false ]]
3703	then
3704	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3705	else
3706	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3707	fi
3708	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3709	echo "fi" >> archive_${frelout[$i]}
3710	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3711	elif [[ $archive_system = DMF ]]
3712	then
3713	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3714	if [[ $files_for_pes = false ]]
3715	then
3716	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3717	locat=DMF
3718	exit
3719	else
3720	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3721	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3722	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3723	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3724	fi
3725	elif [[ $archive_system = tivoli ]]
3726	then
3727	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3728	if [[ $files_for_pes = false ]]
3729	then
3730	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3731	echo "set -x" >> archive_${frelout[$i]}
3732	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3733	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3734	else
3735
3736	echo "set -x" >> archive_${frelout[$i]}
3737	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3738	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3739	cd $tmp_data_catalog
3740	all_files=`ls -1 ${frelout[$i]}/*`
3741	cd - > /dev/null
3742	(( inode = 0 ))
3743	(( tp1 = tasks_per_node + 1 ))
3744	while (( inode < nodes ))
3745	do
3746	# echo "*** all_files = \"$all_files\" "
3747	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3748	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3749	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3750	# echo "*** files = \"$files\" "
3751	# echo "*** all_files = \"$all_files\" "
3752	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3753	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3754	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3755	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3756	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3757	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3758	(( inode = inode + 1 ))
3759	done
3760	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3761	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3762	fi
3763	elif [[ $archive_system = ut ]]
3764	then
3765	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3766	if [[ $files_for_pes = false ]]
3767	then
3768	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3769	echo "set -x" >> archive_${frelout[$i]}
3770	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3771	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3772	else
3773
3774	echo "set -x" >> archive_${frelout[$i]}
3775	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3776	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3777	cd $tmp_data_catalog
3778	all_files=`ls -1 ${frelout[$i]}/*`
3779	cd - > /dev/null
3780	(( inode = 0 ))
3781	(( tp1 = tasks_per_node + 1 ))
3782	while (( inode < nodes ))
3783	do
3784	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3785	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3786	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3787	(( inode = inode + 1 ))
3788	done
3789	fi
3790	elif [[ $archive_system = none ]]
3791	then
3792	printf " +++ archiving on $localhost not available!\n"
3793	fi
3794
3795	if [[ $archive_system != none ]]
3796	then
3797	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3798	then
3799	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3800	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
3801	elif [[ $localhost = nech ]]
3802	then
3803	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3804	fi
3805	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3806	fi
3807	else
3808	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
3809	fi
3810
3811
3812	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3813	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3814	if [[ $files_for_pes = false ]]
3815	then
3816	cat /dev/null > ${pathout[$i]}
3817	else
3818	mkdir -p ${pathout[$i]}
3819	fi
3820
3821	fi
3822
3823
3824	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3825	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3826	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3827	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3828	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3829	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3830	if [[ "${actionout[$i]}" = ar ]]
3831	then
3832	if [[ $files_for_pes = false ]]
3833	then
3834	printf "\n >>> OUTPUT: ${localout[$i]} to"
3835	printf "\n ${pathout[$i]}"
3836	printf "\n File will be copied to archive-system ($archive_system) !\n"
3837	else
3838	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3839	printf "\n ${pathout[$i]}"
3840	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3841	fi
3842	mv ${localout[$i]} ${frelout[$i]}
3843
3844	file_saved=false
3845
3846	if [[ $archive_system = asterix ]]
3847	then
3848	do_stageout=true
3849	(( stageout_anz = 0 ))
3850	while [[ $do_stageout = true ]]
3851	do
3852	if [[ $files_for_pes = false ]]
3853	then
3854	stageout ${frelout[$i]} > STAGE_OUTPUT
3855	else
3856	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3857	fi
3858	cat STAGE_OUTPUT
3859	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3860	then
3861	file_saved=true
3862	do_stageout=false
3863	else
3864	if [[ $files_for_pes = false ]]
3865	then
3866	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3867	else
3868	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3869	fi
3870	(( stageout_anz = stageout_anz + 1 ))
3871	if (( stageout_anz == 10 ))
3872	then
3873	printf "\n +++ stoped after 10 unsuccessful tries!"
3874	archive_save=false
3875	do_stageout=false
3876	else
3877	printf "\n *** new try to store on archive after 15 min:"
3878	sleep 900
3879	fi
3880	fi
3881	done
3882	elif [[ $archive_system = DMF ]]
3883	then
3884	if [[ $files_for_pes = false ]]
3885	then
3886	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3887	locat=DMF
3888	exit
3889	else
3890	rm -rf $ARCHIVE/${frelout[$i]}
3891	cp -r ${frelout[$i]} $ARCHIVE
3892	fi
3893	file_saved=true
3894	elif [[ $archive_system = tivoli ]]
3895	then
3896	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3897	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3898	# GELEGT WERDEN
3899	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3900	chmod g+rx $tmp_data_catalog
3901	if [[ $files_for_pes = false ]]
3902	then
3903	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3904	else
3905	mkdir $tmp_data_catalog/${frelout[$i]}
3906	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3907	fi
3908
3909	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3910	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3911	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3912	if [[ $files_for_pes = false ]]
3913	then
3914	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3915	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3916	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3917	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3918	else
3919	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3920	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3921	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3922	fi
3923
3924	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3925	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3926	file_saved=true
3927
3928	elif [[ $archive_system = ut ]]
3929	then
3930	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3931	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3932	# GELEGT WERDEN
3933	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3934	chmod g+rx $tmp_data_catalog
3935	if [[ $files_for_pes = false ]]
3936	then
3937	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3938	else
3939	mkdir $tmp_data_catalog/${frelout[$i]}
3940	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3941	fi
3942
3943	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3944	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3945	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3946	if [[ $files_for_pes = false ]]
3947	then
3948	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3949	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3950	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3951	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3952	else
3953	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3954	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3955	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3956	fi
3957
3958	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3959	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3960	file_saved=true
3961
3962	else
3963	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3964	archive_save=false
3965	fi
3966	if [[ $file_saved = true ]]
3967	then
3968	if [[ $files_for_pes = false ]]
3969	then
3970	cat /dev/null > ${pathout[$i]}
3971	else
3972	mkdir -p ${pathout[$i]}
3973	fi
3974	fi
3975	fi
3976
3977	# APPEND AUF LOKALER MASCHINE
3978	if [[ "${actionout[$i]}" = "a" ]]
3979	then
3980	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3981	cat ${localout[$i]} >> ${pathout[$i]}
3982	fi
3983
3984	# KOPIEREN AUF LOKALER MASCHINE
3985	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3986	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3987	then
3988
3989	# KOPIEREN AUF EINPROZESSORMASCHINE
3990	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3991	then
3992	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3993	if [[ $link_local_output = true ]]
3994	then
3995	printf " using ln -f\n"
3996	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3997	fi
3998	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3999	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4000	then
4001	if [[ $link_local_output = true ]]
4002	then
4003	printf " ln failed, using cp...\n"
4004	fi
4005	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4006	fi
4007	else
4008	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4009	if [[ $link_local_output = true ]]
4010	then
4011	printf " using ln -f\n"
4012	ln -f ${localout[$i]} ${pathout[$i]}
4013	fi
4014	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4015	if [[ ! -f "${pathout[$i]}" ]]
4016	then
4017	if [[ $link_local_output = true ]]
4018	then
4019	printf " ln failed, using cp...\n"
4020	fi
4021	cp ${localout[$i]} ${pathout[$i]}
4022	fi
4023	fi
4024
4025	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4026	then
4027
4028	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4029	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4030	# WIRD DANN KOPIERT
4031	# PER MOVE UMBENANNT WERDEN
4032	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4033	if [[ $link_local_output = true ]]
4034	then
4035	printf " using ln -f\n"
4036	mkdir ${pathout[$i]}
4037	cd ${localout[$i]}
4038	for file in $(ls *)
4039	do
4040	ln -f $file ${pathout[$i]}
4041	done
4042	cd $TEMPDIR
4043	fi
4044	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4045	if [[ ! -f "${pathout[$i]}/_0000" ]]
4046	then
4047	if [[ $link_local_output = true ]]
4048	then
4049	printf " ln failed for .../_0000, using cp...\n"
4050	fi
4051	cp -r ${localout[$i]} ${pathout[$i]}
4052	fi
4053
4054	fi
4055	fi
4056	done
4057	if (( i != 0 ))
4058	then
4059	if [[ $transfer_problems = true ]]
4060	then
4061	printf "\n$striche\n *** OUTPUT-files saved"
4062	printf "\n +++ WARNING: some data transfers failed! \n"
4063	else
4064	printf "\n$striche\n *** all OUTPUT-files saved \n"
4065	fi
4066	fi
4067
4068
4069	# EVENTUELL FOLGEJOB STARTEN
4070	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4071	if [[ -f CONTINUE_RUN ]]
4072	then
4073
4074	if [[ $archive_save = true ]]
4075	then
4076
4077	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4078	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4079	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4080	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4081	# HANDEN
4082	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4083	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4084	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4085	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4086	then
4087	mc=`echo $mc \| sed 's/#/f/g'`
4088	fi
4089
4090
4091	# JOB STARTEN
4092	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4093	echo " $mc"
4094	printf "\n$striche\n"
4095	if [[ $localhost != $fromhost ]]
4096	then
4097
4098	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
4099	then
4100	echo "*** ssh will be used to initiate restart-runs!"
4101	echo " return_addres=\"$return_addres\" "
4102	echo " return_username=\"$return_username\" "
4103	if [[ $return_addres = 172.20.25.41 ]]
4104	then
4105	# WORKAROUND AUF SCIROCCO AM TIT
4106	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
4107	elif [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4108	then
4109	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4110	else
4111	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4112	fi
4113	else
4114	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4115	locat=restart; exit
4116	fi
4117
4118	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4119	# DER AKTUELLE JOB ENDET
4120	if [[ $queue = special1q ]]
4121	then
4122	sleep 120
4123	else
4124	sleep 30
4125	fi
4126
4127	else
4128
4129	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4130	# RUFEN WERDEN, AUSSER AUF lcfimm
4131	cd $LOCAL_PWD
4132	if [[ $localhost = lcfimm ]]
4133	then
4134	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4135	else
4136	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4137	fi
4138	cd - > /dev/null
4139	fi
4140	printf "\n$striche\n *** restart-run initiated \n"
4141
4142
4143	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4144	# GEHOLT WORDEN SIND, LOESCHEN
4145	(( i = 0 ))
4146	while (( i < iin ))
4147	do
4148	(( i = i + 1 ))
4149	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4150	then
4151	rm -r $tmp_data_catalog/${frelin[$i]}
4152	fi
4153	done
4154
4155	else
4156
4157	printf "\n +++ no restart-run possible, since errors occured"
4158	printf "\n during the archive process"
4159	fi
4160
4161	fi
4162
4163
4164
4165	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4166	if [[ "$email_notification" != "none" ]]
4167	then
4168
4169	if [[ $localhost != $fromhost ]]
4170	then
4171	if [[ -f CONTINUE_RUN ]]
4172	then
4173	echo "PALM restart run necessary" > email_text
4174	echo "description header of actual run:" >> email_text
4175	cat CONTINUE_RUN >> email_text
4176	echo "mrun-command to restart:" >> email_text
4177	echo "$mc" >> email_text
4178	else
4179	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4180	fi
4181	mail $email_notification < email_text
4182	printf "\n *** email notification sent to \"$email_notification\" "
4183	fi
4184	fi
4185
4186
4187
4188	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4189	cd $HOME
4190	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4191
4192	else
4193
4194
4195	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4196	# CHENDE AKTIONEN DURCHGEFUEHRT
4197
4198	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4199	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4200	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4201	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4202	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4203	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4204	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4205	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4206	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4207	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4208	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4209	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4210	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4211	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4212	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4213	if [[ $use_openmp = true ]]
4214	then
4215	mrun_com=${mrun_com}" -O"
4216	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
4217	else
4218	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4219	fi
4220	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4221	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4222	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4223	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4224	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4225	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4226	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4227	if [[ $do_remote = true ]]
4228	then
4229	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4230	fi
4231
4232
4233	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4234	jobfile=jobfile.$RANDOM
4235
4236
4237	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4238	echo "mkdir $TEMPDIR" >> $jobfile
4239	echo "cd $TEMPDIR" >> $jobfile
4240
4241
4242	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4243	if [[ $do_trace = true ]]
4244	then
4245	echo "set -x" >> $jobfile
4246	else
4247	echo "set +vx" >> $jobfile
4248	fi
4249
4250
4251	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4252	# DATEI FUER DEN JOB
4253	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4254	then
4255
4256	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4257	# KOPIEREN
4258	if [[ $restart_run != true ]]
4259	then
4260	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4261	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4262	fi
4263
4264	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4265	echo "set -x" >> $jobfile
4266	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4267	echo "export SOURCES_COMPLETE=true" >> $jobfile
4268
4269	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4270	# ARBEITSVERZEICHNIS VERSCHIEBEN
4271	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4272	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4273	echo "execute_mrun=true" >> $jobfile
4274	echo " " >> $jobfile
4275
4276	else
4277
4278	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4279	# SOWIE GEGEBENENFALLS DES MAKEFILES
4280	if [[ $do_compile = true ]]
4281	then
4282
4283	source_catalog=SOURCES_FOR_RUN_$fname
4284
4285	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4286	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4287	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4288	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4289	echo "export SOURCES_COMPLETE=true" >> $jobfile
4290	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4291
4292	for filename in $source_list
4293	do
4294	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4295	echo "cat > $filename << \"%END%\"" >> $jobfile
4296	cat $source_catalog/$filename >> $jobfile
4297	echo " " >> $jobfile
4298	echo "%END%" >> $jobfile
4299	echo " " >> $jobfile
4300	done
4301
4302	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4303	echo "cat > Makefile << \"%END%\"" >> $jobfile
4304	cat $source_catalog/Makefile >> $jobfile
4305	echo " " >> $jobfile
4306	echo "%END%" >> $jobfile
4307	echo " " >> $jobfile
4308
4309	echo "cd - > /dev/null" >> $jobfile
4310
4311	fi
4312
4313
4314	# ABSPEICHERN DER KONFIGURATIONSDATEI
4315	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4316	echo "cat > $config_file << \"%END%\"" >> $jobfile
4317	cat $config_file >> $jobfile
4318	echo "%END%" >> $jobfile
4319	echo " " >> $jobfile
4320
4321
4322	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4323	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4324	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4325	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4326	echo "%END%" >> $jobfile
4327	if [[ $host = lctit ]]
4328	then
4329	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
4330	echo "mv mrun_new $mrun_script_name" >> $jobfile
4331	fi
4332	echo "chmod u+x $mrun_script_name" >> $jobfile
4333	echo "execute_mrun=true" >> $jobfile
4334	echo " " >> $jobfile
4335
4336	fi
4337
4338
4339	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4340	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4341	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4342	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4343	if [[ $do_remote = true ]]
4344	then
4345	(( i = 0 ))
4346	while (( i < iin ))
4347	do
4348	(( i = i + 1 ))
4349	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4350	if [[ "${transin[$i]}" = job ]]
4351	then
4352	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4353	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4354	echo " " >> $jobfile
4355	echo "%END%" >> $jobfile
4356	else
4357	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4358	fi
4359
4360	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4361	echo "if [[ \$? = 1 ]]" >> $jobfile
4362	echo "then" >> $jobfile
4363	echo " echo \" \" " >> $jobfile
4364	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4365	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4366	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4367	echo " execute_mrun=false" >> $jobfile
4368	echo "fi" >> $jobfile
4369	done
4370	fi
4371
4372	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4373	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4374	echo "LOCAL_PWD=$working_directory" >> $jobfile
4375	echo "export LOCAL_PWD" >> $jobfile
4376
4377	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4378	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4379	echo "export LOCAL_MRUN_PATH" >> $jobfile
4380
4381	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4382	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4383	then
4384	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4385	fi
4386
4387	# MRUN AUF ZIELRECHNER AUFRUFEN
4388	echo "set -x" >> $jobfile
4389	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4390
4391	echo 'ls -al; echo `pwd`' >> $jobfile
4392	echo "cd \$HOME" >> $jobfile
4393	echo "rm -rf $TEMPDIR" >> $jobfile
4394
4395
4396
4397
4398	# JOB PER SUBJOB STARTEN
4399	if [[ $silent = false ]]
4400	then
4401	printf "\n "
4402	else
4403	printf "\n\n"
4404	fi
4405
4406	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4407	rm -rf $jobfile
4408
4409
4410	fi # ENDE REMOTE-TEIL
4411
4412
4413
4414	# ENDE DER PROZEDUR

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