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source: palm/trunk/SCRIPTS/mrun @ 437

Last change on this file since 437 was 437, checked in by raasch, 14 years ago
script adjustements for lcxt5m
Property svn:keywords set to `Id Rev`
File size: 168.4 KB

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1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 437 2010-02-01 04:15:58Z raasch $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
117	# + netcdf/dvrp-options are read from configuration
118	# file, host identifier (local_host) is read from
119	# config file, code related to ftp filetransfer
120	# removed (incl. option -f)
121	# 19/06/07 - Siggi - time limit for cdata jobs increased
122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
123	# if new option -Y (coupling) is given,
124	# output of executables to aout_output removed,
125	# messages are immediately written to stdout instead
126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
128	# variables out to the nodes in coupled mode -disabled-
129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
131	# environment variables out to the nodes in coupled mode
132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
133	# suggestions
134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
135	# argument -g group_number, admit all sla* node_usage
136	# queues
137	# 30/10/07 - Marcus - further adjustments for queues on lctit
138	# 14/02/08 - Bjoern - link of restart files with long file name possible
139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
140	# true, mrun tries "ln -f" on local output and resorts
141	# to "cp" or "cp -r" on error
142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
143	# which allows the user to choose his own job catalog
144	# by setting job_catalog in the configuration file
145	# (default is ~/job_queue),
146	# workaround for mpiexec with -env option,
147	# adjustments for lcxt4 (Bergen Center for Computational
148	# Science)
149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
150	# true, mrun tries "ln -f" on local input and resorts
151	# to "cp" or "cp -r" on error
152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
153	# 14/07/08 - Siggi - adjustments for lcsgih
154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
158	# argument
159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
160	# file
161	# 11/11/08 - Siggi - rules for using user code files changed: user
162	# code splitted into one file per subroutine,
163	# user can provide his/her own makefile, only
164	# default source-code filenames are allowed
165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
167	# with environment variable mpilib
168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
169	# using environment variable totalview
170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
171	# interactive runs
172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
174	# dvr streaming server is automatically started using
175	# new variable dvr_server and a configuration file
176	# .dvrserver.config,
177	# processing of dvr output files using new script
178	# process_dvr_output implemented, in order to make
179	# dvr application more user friendly
180	# 20/03/09 - Marcus - update of n1ge command for lctit
181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
182	# to be followed by a coupled atmosphere-ocean run
183	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
184	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
185	# 08/07/09 - Siggi - default value for email_notification is none,
186	# option -e added to subjob
187	# 19/08/09 - Marcus - MPI debug option
188	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
189	# 25/08/09 - BjornM - adpated for lck
190	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
191	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
192	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
193	# switches on archiving, archiving on SGI-ICE enabled
194	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
195	# adjustment for special1q
196	# 18/12/09 - Carolin- modification of archiving (permq)
197	# 01/02/10 - Siggi - adjustments for lcxt5m
198
199
200
201	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
202
203	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
204	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
205	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
206
207	AddFilenames=""
208	additional_conditions=""
209	add_source_path=""
210	afname=""
211	archive_save=true
212	archive_system=none
213	compiler_name=""
214	cond1=""
215	cond2=""
216	config_file=.mrun.config
217	coupled_dist=""
218	coupled_mode="mpi1"
219	cpp_opts=""
220	cpp_options=""
221	cpumax=0
222	cpurest=0
223	delete_temporary_catalog=true
224	do_batch=false
225	do_compile=true
226	do_remote=false
227	do_stagein=true
228	do_stageout=true
229	do_trace=false
230	email_notification="none"
231	exclude=""
232	executable=""
233	execution_error=false
234	fimm=false
235	fname=test
236	fromhost=""
237	global_revision=""
238	group_number=none
239	host=""
240	host_file=""
241	hp=""
242	ignore_archive_error=false
243	input_list=""
244	interpreted_config_file=""
245	job_catalog="~/job_queue"
246	job_on_file=""
247	keep_data_from_previous_run=false
248	link_local_input=false
249	link_local_output=false
250	localhost_realname=$(hostname)
251	local_compile=false
252	local_dvrserver_running=.FALSE.
253	locat=normal
254	mainprog=""
255	makefile=""
256	mc=$0
257	while [[ $(echo $mc \| grep -c "/") != 0 ]]
258	do
259	mc=`echo $mc \| cut -f2- -d"/"`
260	done
261	module_files=""
262	mrun_script_name=$mc
263	netcdf_inc=""
264	netcdf_lib=""
265	netcdf_support=false
266	node_usage=default
267	numprocs=""
268	numprocs_atmos=0
269	numprocs_ocean=0
270	OOPT=""
271	openmp=false
272	output_list=""
273	package_list=""
274	punkte="..........................................................."
275	queue=none
276	read_from_config=""
277	restart_run=false
278	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
279	if [[ $return_addres = 130.75.105.158 ]]
280	then
281	return_addres=172.20.25.41
282	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
283	fi
284	return_password=""
285	return_username=$LOGNAME
286	remotecall=false
287	remote_username=""
288	run_coupled_model=false
289	run_mode=""
290	scirocco=false
291	store_on_archive_system=false
292	striche=" ----------------------------------------------------------------------------"
293	silent=false
294	source_list=""
295	source_path=SOURCE
296	tasks_per_node=""
297	threads_per_task=1
298	tmpcreate=false
299	tmp_data_catalog=""
300	transfer_problems=false
301	usern=$LOGNAME
302	use_openmp=false
303	working_directory=`pwd`
304	TOPT=""
305	XOPT=""
306	zeit=$( date \| cut -c 12-19 )
307
308	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
309	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
310
311	typeset -R30 calltime
312	typeset -L20 spalte1
313	typeset -L40 spalte2
314	typeset -L60 spalte3
315	typeset -L35 string1=`date`
316	typeset -L12 string2=$usern
317	typeset -L12 string3=$localhost_realname
318	typeset -L12 string4
319	typeset -L12 string5
320	typeset -L30 version="MRUN 2.0 Rev$Rev: 437 $"
321
322
323
324	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
325	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
326
327	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
328	# EXPORTIERT WERDEN
329	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
330	export group_number input_list memory numprocs output_list queue run_mode
331
332
333
334	# FEHLERBEHANDLUNG
335	# BEI EXIT:
336	trap 'rm -rf $working_directory/tmp_mrun
337	if [[ $locat != localhost ]]
338	then
339	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
340	# then
341	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
342	#MRUN-calls on $localhost
343	#
344	#date and time user localhost remotehost termination mrun-command
345	#--------------------------------------------------------------------------------------------------------------------
346	#%STATEND%
347	# chmod 666 ${mrun_path}/statistik/mrun_statistik
348	# fi
349	#
350	# # EINTRAG IN DIE STATISTIK-DATEI
351	# string4=$host
352	# string5=$locat
353	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
354	# then
355	# if [[ $do_batch = true ]]
356	# then
357	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
358	# else
359	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
360	# fi
361	# fi
362	echo " " > /dev/null
363	fi
364
365	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
366	then
367
368	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
369	(( i = 0 ))
370	while (( i < iec ))
371	do
372	(( i = i + 1 ))
373	printf "\n *** Execution of ERROR-command:\n"
374	printf " >>> ${err_command[$i]}\n"
375	eval ${err_command[$i]}
376	done
377	if [[ -n $interpreted_config_file ]] then
378	rm -rf $interpreted_config_file
379	fi
380	if [[ -n .mrun_environment ]] then
381	rm -rf .mrun_environment
382	fi
383	if [[ $tmpcreate = true ]]
384	then
385	printf "\n *** Contents of \"$TEMPDIR\":\n"
386	ls -al; cd
387	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
388	fi
389	if [[ "$dvrserver_id" != "" ]]
390	then
391	echo "+++ killing dvrserver_id=$dvrserver_id"
392	kill $dvrserver_id
393	fi
394	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
395	then
396	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
397	fi
398	printf "\n\n+++ MRUN killed \n\n"
399	elif [[ $locat != control_c ]]
400	then
401	printf "\n\n --> all actions finished\n\n"
402	printf " Bye, bye $usern !!\n\n"
403	fi' exit
404
405
406	# BEI TERMINAL-BREAK:
407	trap 'rm -rf $working_directory/tmp_mrun
408	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
409	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
410	then
411	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
412	fi
413	if [[ "$dvrserver_id" != "" ]]
414	then
415	echo "+++ killing dvrserver_id=$dvrserver_id"
416	kill $dvrserver_id
417	fi
418	printf "\n+++ MRUN killed by \"^C\" \n\n"
419	locat=control_c
420	exit
421	' 2
422
423
424	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
425	# BEEN SET
426	if [[ "$PALM_BIN" = "" ]]
427	then
428	printf "\n +++ environment variable PALM_BIN has not been set"
429	printf "\n please set it to the directory where the PALM scripts are located"
430	locat=palm_bin; exit
431	fi
432	export PATH=$PALM_BIN:$PATH
433
434
435
436	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
437	# FUER FOLGEJOBS BENOETIGT WIRD
438	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
439	do
440	case $option in
441	(a) afname=$OPTARG;;
442	(A) store_on_archive_system=true; mc="$mc -A";;
443	(b) do_batch=true; mc="$mc -b";;
444	(B) delete_temporary_catalog=false; mc="$mc -B";;
445	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
446	(C) restart_run=true; mc="$mc -C";;
447	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
448	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
449	(F) job_on_file="-D"; mc="$mc -F";;
450	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
451	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
452	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
453	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
454	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
455	(I) ignore_archive_error=true; mc="$mc -I";;
456	(k) keep_data_from_previous_run=true; mc="$mc -k";;
457	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
458	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
459	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
460	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
461	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
462	(O) use_openmp=true; mc="$mc -O";;
463	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
464	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
465	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
466	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
467	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
468	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
469	(S) read_from_config=false; mc="$mc -S";;
470	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
471	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
472	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
473	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
474	(v) silent=true; mc="$mc -v";;
475	(x) do_trace=true;set -x; mc="$mc -x";;
476	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
477	(y) ocean_file_appendix=true; mc="$mc -y";;
478	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
479	(\?) printf "\n +++ unknown option $OPTARG \n"
480	printf "\n --> type \"$0 ?\" for available options \n"
481	locat=parameter;exit;;
482	esac
483	done
484
485
486	# EVTL. POSITIONSPARAMETER EINLESEN
487	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
488	shift OPTIND-1
489
490
491	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
492	if [[ "$1" = "?" ]]
493	then
494	(printf "\n *** mrun can be called as follows:\n"
495	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
496	printf "\n Description of available options:\n"
497	printf "\n Option Description Default-Value"
498	printf "\n -a base name of input files equiv. -d"
499	printf "\n -A archiving when using file-attribute fl"
500	printf "\n -b batch-job on local machine ---"
501	printf "\n -B do not delete temporary directory at end ---"
502	printf "\n -c configuration file .mrun.config"
503	printf "\n -d base name of files attached to program test"
504	printf "\n -D preprocessor(cpp)-directives \"\" "
505	printf "\n -F create remote job file only ---"
506	printf "\n -h execution host $localhost_realname"
507	printf "\n -i INPUT control list \"\" "
508	printf "\n -I archiving errors of previous batch-jobs"
509	printf "\n will be ignored"
510	printf "\n -k keep data from previous run"
511	printf "\n -K additional conditions for controling"
512	printf "\n usage of conditional code and"
513	printf "\n env-variables in configuration file \"\" "
514	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
515	printf "\n -M Makefile name Makefile"
516	printf "\n -n node usage (shared/not_shared) depending on -h"
517	printf "\n -o OUTPUT control list \"\" "
518	printf "\n -O use OpenMP ---"
519	printf "\n -p software package list \"\" "
520	printf "\n -q queue \"$queue\" "
521	printf "\n -r run control list (combines -i -o) \"\" "
522	printf "\n -s filenames of routines to be compiled \"\" "
523	printf "\n must end with .f, .f90, .F, or .c !"
524	printf "\n use \"..\" for more than one file and wildcards"
525	printf "\n -s TEST compiles all files with w-permit"
526	printf "\n -S config file interpreted by shellscript ---"
527	printf "\n -t allowed cpu-time in seconds (batch) 0"
528	printf "\n -T tasks per node depending on -h"
529	printf "\n -u username on remote machine \"\" "
530	printf "\n -v no prompt for confirmation ---"
531	printf "\n -x tracing of mrun for debug purposes ---"
532	printf "\n -X # of processors (on parallel machines) 1"
533	printf "\n -y add appendix \"_O\" to all local output"
534	printf "\n files (ocean precursor runs followed by"
535	printf "\n coupled atmosphere-ocean runs) ---"
536	printf "\n -Y run coupled model, \"#1 #2\" with"
537	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
538	printf "\n "
539	printf "\n Possible values of positional parameter <modus>:"
540	printf "\n \"?\" - this outline \n\n") \| more
541	exit
542	elif [[ "$1" != "" ]]
543	then
544	printf "\n +++ positional parameter $1 unknown \n"
545	locat=parameter; exit
546	fi
547
548
549
550	# KURZE STARTMELDUNG
551	printf "\n*** $version "
552	printf "\n will be executed. Please wait ..."
553
554
555
556	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
557	if [[ ! -f $config_file ]]
558	then
559	printf "\n\n +++ configuration file: "
560	printf "\n $config_file"
561	printf "\n does not exist"
562	locat=connect; exit
563	fi
564
565
566	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
567	line=""
568	grep "%host_identifier" $config_file > tmp_mrun
569	while read line
570	do
571	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
572	then
573	HOSTNAME=`echo $line \| cut -d" " -s -f2`
574	host_identifier=`echo $line \| cut -d" " -s -f3`
575	if [[ $localhost_realname = $HOSTNAME ]]
576	then
577	localhost=$host_identifier
578	break
579	fi
580	fi
581	done < tmp_mrun
582
583	if [[ "$localhost" = "" ]]
584	then
585	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
586	printf "\n for local host \"$localhost_realname\"."
587	printf "\n Please add line"
588	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
589	printf "\n to the configuration file."
590	locat=localhost; exit
591	fi
592
593
594	# HOSTSPEZIFISCHE VARIABLEN SETZEN
595	case $localhost_realname in
596	(r1\|r2\|h01\|b01) archive_system=tivoli;;
597	(cs*) archive_system=ut;;
598	(fimm.bccs.uib.no) fimm=true;;
599	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
600	(scirocco) scirocco=true;;
601	esac
602
603
604
605	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
606	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
607	[[ "$afname" = "" ]] && afname=$fname
608
609
610	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
611	if [[ "$run_mode" != "" ]]
612	then
613	input_list="$input_list $run_mode"
614	output_list="$output_list $run_mode"
615	fi
616
617
618	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
619	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
620	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
621	# STARTET)
622	if [[ "$fromhost" = "" ]]
623	then
624	fromhost=$localhost
625	fi
626
627
628	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
629	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
630	then
631	source_list=TEST
632	local_compile=true
633	host=$localhost
634	fi
635
636
637	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
638	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
639	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
640	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
641	if [[ -n $host && "$host" != $localhost ]]
642	then
643	do_batch=true
644	do_remote=true
645	case $host in
646	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lcxt5m\|lck) true;;
647	(*) printf "\n"
648	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
649	printf "\n is not available"
650	locat=nqs; (( iec = 0 )); exit;;
651	esac
652	else
653	host=$localhost
654	fi
655
656
657	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
658	if [[ -n $additional_conditions ]]
659	then
660	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
661	cond1=`echo $additional_conditions \| cut -d" " -f1`
662	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
663	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
664	if [[ -n $dummy ]]
665	then
666	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
667	locat=options; exit
668	fi
669	fi
670
671
672	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
673	if [[ $run_coupled_model = true ]]
674	then
675
676	if [[ -n $coupled_dist ]]
677	then
678
679	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
680	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
681
682	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
683	then
684
685	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
686	printf "\n PEs (total) : $numprocs"
687	printf "\n PEs (atmosphere): $numprocs_atmos"
688	printf "\n PEs (ocean) : $numprocs_ocean"
689	locat=coupling; exit
690
691	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
692	# THIS SHOULD BE REMOVED IN FUTURE
693	elif (( $numprocs_ocean != $numprocs_atmos ))
694	then
695
696	printf "\n +++ currently only 1:1 topologies are supported"
697	printf "\n PEs (total) : $numprocs"
698	printf "\n PEs (atmosphere): $numprocs_atmos"
699	printf "\n PEs (ocean) : $numprocs_ocean"
700	(( numprocs_atmos = $numprocs / 2 ))
701	(( numprocs_ocean = $numprocs / 2 ))
702	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
703
704	fi
705
706	else
707
708	(( numprocs_ocean = $numprocs / 2 ))
709	(( numprocs_atmos = $numprocs / 2 ))
710
711	fi
712	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
713
714	# GET coupled_mode FROM THE CONFIG FILE
715	line=""
716	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
717	while read line
718	do
719	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
720	then
721	coupled_mode="mpi2"
722	fi
723	done < tmp_mrun
724
725	fi
726
727
728	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
729	# ARCHIVIERUNG FEHLGESCHLAGEN IST
730	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
731	then
732	if [[ $ignore_archive_error = false ]]
733	then
734	printf "\n +++ data archiving of previous run failed"
735	printf "\n see directory \~/job_queue on remote machine"
736	locat=archive; exit
737	else
738	printf "\n +++ warning: data archiving in a previous run failed"
739	printf "\n MRUN continues, trying to get backup copy"
740	fi
741	fi
742
743
744
745	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
746	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
747	if [[ "$read_from_config" = false ]]
748	then
749
750	[[ $silent = false ]] && printf "\n Reading the configuration file... "
751	while read zeile
752	do
753	[[ $silent = false ]] && printf "."
754
755
756	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
757	# ERSETZEN
758	eval zeile=\"$zeile\"
759
760
761	# INTERPRETATION DER ZEILE
762	if [[ "$(echo $zeile)" = "" ]]
763	then
764	# LEERZEILE, KEINE AKTION
765	continue
766
767	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
768	then
769
770	# ZEILE IST KOMMENTARZEILE
771	true
772
773	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
774	then
775
776	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
777	zeile=$(echo $zeile \| cut -c2-)
778	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
779	var=`echo $zeile \| cut -d" " -f1`
780	value=`echo $zeile \| cut -d" " -s -f2`
781	for_host=`echo $zeile \| cut -d" " -s -f3`
782	for_cond1=`echo $zeile \| cut -d" " -s -f4`
783	for_cond2=`echo $zeile \| cut -d" " -s -f5`
784
785	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
786	then
787
788	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
789	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
790	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
791
792
793	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
794	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
795	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
796	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
797	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
798	# KONFIGURATIONSDATEI
799	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
800	then
801	eval $var=\$value
802
803	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
804	if [[ $do_trace = true ]]
805	then
806	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
807	fi
808	fi
809
810	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
811	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
812	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
813	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
814	if [[ $var = host ]]
815	then
816	if [[ -n $host && "$host" != $localhost ]]
817	then
818	do_batch=true
819	do_remote=true
820	case $host in
821	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
822	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
823	printf "\n is not available"
824	locat=nqs; exit;;
825	esac
826	else
827	host=$localhost
828	fi
829	fi
830
831	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
832	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
833	# DEN PROGRAMMEN BENOETIGT WERDEN
834	export $var
835	fi
836
837
838
839
840	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
841	then
842
843	# ZEILE DEFINIERT ERROR-KOMMANDO
844	(( iec = iec + 1 ))
845	zeile=$(echo $zeile \| cut -c4-)
846	err_command[$iec]="$zeile"
847
848	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
849	then
850
851	# ZEILE DEFINIERT INPUT-KOMMANDO
852	(( iic = iic + 1 ))
853	zeile=$(echo $zeile \| cut -c4-)
854	in_command[$iic]="$zeile"
855
856	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
857	then
858
859	# ZEILE DEFINIERT OUTPUT-KOMMANDO
860	(( ioc = ioc + 1 ))
861	zeile=$(echo $zeile \| cut -c4-)
862	out_command[$ioc]="$zeile"
863
864	else
865
866	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
867	# s2a: in/out - Feld
868	# s2b: loc - Feld (optional)
869	# s2c: tr/ar - Feld (optional)
870	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
871	s1=`echo $zeile \| cut -d" " -f1`
872	s2=`echo $zeile \| cut -d" " -s -f2`
873	s2a=$(echo $s2 \| cut -d":" -f1)
874	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
875	then
876	s2b=""
877	s2c=""
878	else
879	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
880	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
881	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
882	fi
883	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
884	s3=`echo $zeile \| cut -d" " -f3`
885	s4=`echo $zeile \| cut -d" " -s -f4`
886	s5=`echo $zeile \| cut -d" " -s -f5`
887	s6=`echo $zeile \| cut -d" " -s -f6`
888
889
890	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
891	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
892	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
893	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
894	# HANDEN SEIN MUSS (D.H. s2b = loc)
895	IFSALT="$IFS"; IFS="$IFS:"
896	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
897	then
898	found=false
899	for actual in $input_list
900	do
901	for formal in $s3
902	do
903	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
904	done
905	done
906	if [[ $found = true ]]
907	then
908	(( iin = iin + 1 ))
909	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
910	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
911	extin[$iin]=$s6
912	fi
913	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
914	then
915	found=false
916	for actual in $output_list
917	do
918	for formal in $s3
919	do
920	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
921	done
922	done
923	if [[ $found = true ]]
924	then
925	(( iout = iout + 1 ))
926	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
927	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
928	fi
929	elif [[ "$s2a" != in && "$s2a" != out ]]
930	then
931	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
932	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
933	locat=connect; exit
934	fi
935	IFS="$IFSALT"
936	fi
937	done < $config_file
938
939	else
940
941
942	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
943	[[ $silent = false ]] && printf "..."
944	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
945	export interpreted_config_file=.icf.$RANDOM
946
947
948
949	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
950	# VERFUEGUNG STELLEN
951	cat > .mrun_environment << %%END%%
952	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
953	config_file = '$config_file', do_remote = '$do_remote',
954	do_trace = '$do_trace', host = '$host',
955	input_list = '$input_list', icf = '$interpreted_config_file',
956	localhost = '$localhost', output_list = '$output_list' /
957
958	%%END%%
959
960	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
961	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
962	mrun_memory=$memory
963	mrun_group_number=$group_number
964	mrun_cpumax=$cpumax
965	mrun_numprocs=$numprocs
966
967	if [[ $localhost_realname = "sx-fep" ]]
968	then
969	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
970	else
971	interpret_config.x
972	fi
973	rm .mrun_environment
974
975
976	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
977	chmod u+x $interpreted_config_file
978	export PATH=$PATH:.
979	. $interpreted_config_file
980	rm $interpreted_config_file
981
982
983	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
984	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
985	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
986	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
987	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
988
989	fi
990
991
992	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
993	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
994	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
995	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
996	if [[ "$SOURCES_COMPLETE" = "" ]]
997	then
998
999	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1000	# VEREINBART WURDE
1001	source_path=""
1002	line=""
1003	grep "%source_path" $config_file > tmp_mrun
1004	while read line
1005	do
1006	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1007	then
1008	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1009	then
1010	global_source_path=`echo $line \| cut -d" " -f2`
1011	fi
1012	fi
1013	done < tmp_mrun
1014
1015	line=""
1016	found=false
1017	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1018	while read line
1019	do
1020	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1021	then
1022	if [[ $found = true ]]
1023	then
1024	printf "\n\n +++ more than one source path found in configuration file"
1025	printf "\n for local host \"$localhost\" "
1026	locat=source_path; exit
1027	fi
1028	source_path=`echo $line \| cut -d" " -f2`
1029	found=true
1030	fi
1031	done < tmp_mrun
1032	rm tmp_mrun
1033
1034	if [[ "$source_path" = "" ]]
1035	then
1036	if [[ "$global_source_path" != "" ]]
1037	then
1038	source_path=$global_source_path
1039	else
1040	printf "\n\n +++ no source path found in configuration file"
1041	printf "\n for local host \"$localhost\" "
1042	locat=source_path; exit
1043	fi
1044	fi
1045	eval source_path=$source_path
1046
1047	if [[ ! -d $source_path ]]
1048	then
1049	printf "\n\n +++ source path \"$source_path\" on local host"
1050	printf "\n \"$localhost\" does not exist"
1051	locat=source_path; exit
1052	fi
1053
1054	fi
1055
1056
1057	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1058	# DURCH OPTION -G MITGETEILT)
1059	if [[ "$global_revision" = "" ]]
1060	then
1061	global_revision=`svnversion $source_path 2>/dev/null`
1062	global_revision="Rev: $global_revision"
1063	fi
1064
1065
1066	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1067	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1068	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1069	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1070	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1071	if [[ -n $host && "$host" != $localhost ]]
1072	then
1073	do_batch=true
1074	do_remote=true
1075	case $host in
1076	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
1077	(*) printf "\n"
1078	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1079	printf "\n is not available"
1080	locat=nqs; (( iec = 0 )); exit;;
1081	esac
1082	else
1083	host=$localhost
1084	fi
1085
1086
1087	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1088	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1089	then
1090
1091	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1092	if [[ ! -n $numprocs ]]
1093	then
1094	printf "\n"
1095	printf "\n +++ option \"-K parallel\" requires additional specification"
1096	printf "\n of the number of processors to be used by"
1097	printf "\n mrun-option \"-X\" or by environment-variable"
1098	printf "\n \"numprocs\" in the configuration file"
1099	locat=numprocs; (( iec = 0 )); exit
1100	fi
1101
1102	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1103	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1104	# GESAMTPROZESSORANZAHL IST
1105	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1106	then
1107	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1108	(( ival = $tasks_per_node ))
1109	(( pes = numprocs ))
1110	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1111	# then
1112	# (( pes = pes - 1 ))
1113	# fi
1114	(( ii = pes / ival ))
1115	if (( pes - ii * ival > 0 ))
1116	then
1117	printf "\n"
1118	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1119	printf "\n divisor of the total number of processors (option \"-X\")"
1120	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1121	locat=tasks_per_node; (( iec = 0 )); exit
1122	fi
1123	fi
1124
1125	# IBMY HAT NUR EINEN KNOTEN
1126	if [[ $host = ibmy ]]
1127	then
1128	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1129	then
1130	printf "\n"
1131	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1132	printf "\n total number of processors (option \"-X\")"
1133	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1134	locat=tasks_per_node; (( iec = 0 )); exit
1135	fi
1136	fi
1137
1138	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1139	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1140	if [[ $use_openmp = true ]]
1141	then
1142	threads_per_task=$tasks_per_node
1143	tasks_per_node=1
1144	fi
1145
1146	# SETTINGS FOR SUBJOB-COMMAND
1147	if [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1148	then
1149	(( tp1 = tasks_per_node * threads_per_task ))
1150	TOPT="-T $tp1"
1151	else
1152	TOPT="-T $tasks_per_node"
1153	fi
1154	OOPT="-O $threads_per_task"
1155
1156	# GESAMTZAHL DER KNOTEN BESTIMMEN
1157	if [[ "$tasks_per_node" != "" ]]
1158	then
1159	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1160	fi
1161
1162	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1163	# SETZEN
1164	if [[ $node_usage = default ]]
1165	then
1166	if [[ $host = ibms ]]
1167	then
1168	node_usage=shared
1169	elif [[ $host = lctit ]]
1170	then
1171	node_usage=RAM64GB
1172	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1173	then
1174	node_usage=singlejob
1175	else
1176	node_usage=not_shared
1177	fi
1178	fi
1179
1180	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
1181	then
1182	printf "\n"
1183	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1184	printf "\n \"shared\" or \"not_shared\""
1185	locat=tasks_per_node; (( iec = 0 )); exit
1186	fi
1187
1188	fi
1189
1190	# PRUEFEN, OB HOSTFILE EXISTIERT
1191	if [[ -n $hostfile ]]
1192	then
1193	if [[ ! -f $hostfile ]]
1194	then
1195	printf "\n"
1196	printf "\n +++ hostfile \"$hostfile\" does not exist"
1197	locat=hostfile; exit
1198	fi
1199	fi
1200
1201	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1202	if [[ $host = ibmy && $do_remote = false ]]
1203	then
1204	if [[ ! -f $HOME/.rhosts ]]
1205	then
1206	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1207	printf "\n\n *** file:"
1208	printf "\n $HOME/.rhosts"
1209	printf "\n was created\n"
1210	fi
1211	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1212	then
1213	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1214	printf "\n\n *** file:"
1215	printf "\n $HOME/.rhosts"
1216	printf "\n was extended by the name of the current host\n"
1217	fi
1218	fi
1219
1220
1221
1222	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1223	if [[ $queue = none ]]
1224	then
1225	case $host in
1226	(ibmb) if [[ $node_usage = shared ]]
1227	then
1228	queue=cshare
1229	else
1230	queue=csolo
1231	fi;;
1232	(ibmh) queue=no_class;;
1233	(ibmy) queue=parallel;;
1234	(lcsgib) queue=bigq;;
1235	(lcsgih) queue=bigq;;
1236	(lctit) queue=RAM64GB;;
1237	(nech) queue=none;;
1238	(necriam) queue=SP;;
1239	(unics) queue=unics;;
1240	esac
1241	fi
1242
1243
1244	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1245	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1246	# ERMITTELN
1247	(( i = 0 ))
1248	while (( i < iin ))
1249	do
1250	(( i = i + 1 ))
1251	(( maxcycle = 0 ))
1252
1253	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1254	if [[ "${actionin[$i]}" = di ]]
1255	then
1256	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1257	# REM-MASCHINE AUSWERTEN
1258	eval filename=${pathin[$i]}/${endin[$i]}
1259	else
1260	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1261	# REM-MASCHINE AUSWERTEN
1262	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1263	fi
1264
1265	# PRUEFEN AUF VORHANDENSEIN
1266	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1267	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1268	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1269	then
1270	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1271	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1272	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1273	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1274	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1275	if [[ "${transin[$i]}" != "locopt" ]]
1276	then
1277	printf "\n\n +++ INPUT-file: "
1278	if [[ "${extin[$i]}" = "" ]]
1279	then
1280	printf "\n $filename"
1281	else
1282	printf "\n $filename.${extin[$i]}"
1283	fi
1284	printf "\n does not exist\n"
1285	locat=input; exit
1286	else
1287	transin[$i]="unavailable"
1288	fi
1289	else
1290
1291	# ZYKLUSNUMMER FESTSTELLEN
1292	ls -1 -d $filename > filelist 2>/dev/null
1293	ls -1 -d $filename.* >> filelist 2>/dev/null
1294	while read zeile
1295	do
1296	cycle=$(print $zeile \| cut -f2 -d".")
1297	if [[ "$cycle" = "$zeile" ]]
1298	then
1299	(( icycle = 0 ))
1300	elif [[ "$cycle" = "${extin[$i]}" ]]
1301	then
1302	(( icycle = 0 ))
1303	else
1304	(( icycle = $cycle ))
1305	fi
1306	if (( icycle > maxcycle ))
1307	then
1308	(( maxcycle = icycle ))
1309	file_to_be_used=$zeile
1310	fi
1311	done <filelist
1312	rm filelist
1313
1314	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1315	if (( maxcycle > 0 ))
1316	then
1317	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1318	then
1319	filename=${filename}.$maxcycle.${extin[$i]}
1320	else
1321	filename=${filename}.$maxcycle
1322	fi
1323	else
1324	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1325	then
1326	filename=${filename}.${extin[$i]}
1327	fi
1328	fi
1329
1330	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1331	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1332	absnamein[$i]=$filename
1333	if (( maxcycle > 0 ))
1334	then
1335	if [[ "${actionin[$i]}" = di ]]
1336	then
1337	frelin[$i]=${endin[$i]}.$maxcycle
1338	else
1339	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1340	fi
1341	else
1342	if [[ "${actionin[$i]}" = di ]]
1343	then
1344	frelin[$i]=${endin[$i]}
1345	else
1346	frelin[$i]=${afname}${endin[$i]}
1347	fi
1348	fi
1349
1350	fi
1351	done
1352
1353
1354	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1355	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1356	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1357	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1358	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1359	(( i = 0 ))
1360	while (( i < iout ))
1361	do
1362	(( i = i + 1 ))
1363	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1364	then
1365	if [[ "${actionout[$i]}" = tr ]]
1366	then
1367	actionout[$i]=""
1368	elif [[ "${actionout[$i]}" = trpe ]]
1369	then
1370	actionout[$i]=pe
1371	elif [[ "${actionout[$i]}" = tra ]]
1372	then
1373	actionout[$i]=a
1374	fi
1375	(( maxcycle = 0 ))
1376	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1377	eval catalogname=${pathout[$i]}
1378	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1379	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1380	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1381	then
1382
1383	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1384	if cat /dev/null > $filename
1385	then
1386	rm $filename
1387	else
1388
1389	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1390	if [[ ! -d $catalogname ]]
1391	then
1392	if mkdir -p $catalogname
1393	then
1394	printf "\n\n *** directory:"
1395	printf "\n $catalogname"
1396	printf "\n was created\n"
1397	else
1398	printf "\n\n +++ OUTPUT-file:"
1399	printf "\n $filename"
1400	printf "\n cannot be created, because directory does not exist"
1401	printf "\n and cannot be created either"
1402	printf "\n"
1403	locat=output ; exit
1404	fi 2>/dev/null
1405	else
1406	printf "\n\n +++ OUTPUT-file:"
1407	printf "\n $filename"
1408	printf "\n cannot be created, although directory exists"
1409	printf "\n"
1410	locat=output ; exit
1411	fi
1412	fi 2>/dev/null
1413	else
1414
1415	# ZYKLUSNUMMER FESTSTELLEN
1416	ls -1 -d $filename > filelist 2>/dev/null
1417	ls -1 -d $filename.* >> filelist 2>/dev/null
1418	while read zeile
1419	do
1420	cycle=$(print $zeile \| cut -f2 -d".")
1421	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1422	then
1423	(( icycle = 1 ))
1424	else
1425	(( icycle = $cycle + 1 ))
1426	fi
1427	if (( icycle > maxcycle ))
1428	then
1429	(( maxcycle = icycle ))
1430	fi
1431	done <filelist
1432	rm filelist
1433	fi
1434
1435	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1436	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1437	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1438	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1439	if [[ "${actionout[$i]}" != a ]]
1440	then
1441	if (( maxcycle > 0 ))
1442	then
1443	filename=${filename}.$maxcycle
1444	if cat /dev/null > $filename
1445	then
1446	rm $filename
1447	else
1448	printf "\n +++ OUTPUT-file:"
1449	printf "\n $filename"
1450	printf "\n cannot be created"
1451	locat=output ; exit
1452	fi
1453	fi
1454	else
1455	(( maxcycle = maxcycle - 1 ))
1456	if (( maxcycle > 0 ))
1457	then
1458	filename=${filename}.$maxcycle
1459	fi
1460	fi
1461
1462	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1463	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1464	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1465	pathout[$i]=$filename
1466	if (( maxcycle > 0 ))
1467	then
1468	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1469	else
1470	frelout[$i]=${fname}${endout[$i]}
1471	fi
1472
1473	fi
1474	done
1475
1476
1477	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1478	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1479	then
1480	if [[ "$dvr_inc" = "" ]]
1481	then
1482	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1483	printf "\n This is required for the dvrp_graphics package.\n"
1484	locat=dvr; exit
1485	fi
1486	if [[ "$dvr_lib" = "" ]]
1487	then
1488	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1489	printf "\n This is required for the dvrp_graphics package.\n"
1490	locat=dvr; exit
1491	fi
1492	fi
1493
1494
1495	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1496	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1497	# UEBERSETZT ZU WERDEN)
1498	if [[ "$mainprog" = "" && "$executable" = "" ]]
1499	then
1500	printf "\n +++ neither main program nor executable defined"
1501	locat=source; exit
1502	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1503	then
1504	printf "\n +++ main program as well as executable defined"
1505	locat=source; exit
1506	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1507	then
1508	do_compile=false
1509	fi
1510
1511
1512	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1513	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1514	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1515	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1516	then
1517	rm -rf SOURCES_FOR_RUN_$fname
1518	mkdir SOURCES_FOR_RUN_$fname
1519	fi
1520
1521
1522	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1523	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1524	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1525	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1526	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1527	then
1528
1529	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1530	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1531
1532
1533	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1534	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1535	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1536	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1537	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1538	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1539	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1540	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1541	# GESAMMELT
1542	if [[ "$source_list" = WRITE_PERMIT ]]
1543	then
1544
1545	source_list=""
1546	cd $source_path
1547
1548
1549	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1550	Names=$(ls -1 *.f90 2>&1)
1551	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1552	Names=$(ls -1 *.F90 2>&1)
1553	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1554	Names=$(ls -1 *.F 2>&1)
1555	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1556	Names=$(ls -1 *.f 2>&1)
1557	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1558	Names=$(ls -1 *.c 2>&1)
1559	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1560
1561
1562	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1563	for dateiname in $Filenames
1564	do
1565	if [[ -w $dateiname ]]
1566	then
1567	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1568	then
1569	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1570	source_list=$source_list"$dateiname "
1571	fi
1572	fi
1573	done
1574
1575	cd - > /dev/null
1576
1577
1578	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1579	then
1580
1581	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1582	source_list=""
1583	cd $source_path
1584
1585
1586	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1587	if [[ ! -d .svn ]]
1588	then
1589	printf "\n\n +++ source directory"
1590	printf "\n \"$source_path\" "
1591	printf "\n is not under control of \"subversion\"."
1592	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1593	fi
1594
1595
1596	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1597	Filenames=""
1598	svn status > tmp_mrun
1599	while read line
1600	do
1601	firstc=`echo $line \| cut -c1`
1602	if [[ $firstc = M \|\| $firstc = "?" ]]
1603	then
1604	Name=`echo "$line" \| cut -c8-`
1605	extension=`echo $Name \| cut -d. -f2`
1606	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1607	then
1608	Filenames="$Filenames "$Name
1609	fi
1610	fi
1611	done < tmp_mrun
1612
1613
1614	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1615	for dateiname in $Filenames
1616	do
1617	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1618	source_list=$source_list"$dateiname "
1619	done
1620
1621	cd - > /dev/null
1622
1623
1624	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1625	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1626	# VORHANDEN
1627	elif [[ "$source_list" != "" && $restart_run != true ]]
1628	then
1629
1630	cd $source_path
1631
1632	for filename in $source_list
1633	do
1634
1635	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1636	if [[ $(print $filename \| grep -c "/") != 0 ]]
1637	then
1638	printf "\n +++ source code file: $filename"
1639	printf "\n must not contain (\"/\") "
1640	locat=source; exit
1641	fi
1642
1643	if [[ ! -f $filename ]]
1644	then
1645	printf "\n +++ source code file: $filename"
1646	printf "\n does not exist"
1647	locat=source; exit
1648	else
1649	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1650	fi
1651
1652	done
1653
1654	cd - > /dev/null
1655
1656	fi
1657
1658
1659	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1660	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1661	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1662	if [[ $restart_run != true ]]
1663	then
1664
1665	if [[ ! -f "$source_path/$mainprog" ]]
1666	then
1667	printf "\n\n +++ main program: $mainprog"
1668	printf "\n does not exist in source directory"
1669	printf "\n \"$source_path\"\n"
1670	locat=source; exit
1671	else
1672	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1673	then
1674	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1675	source_list=${mainprog}" $source_list"
1676	fi
1677	fi
1678	fi
1679
1680
1681	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1682	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1683	if [[ "$restart_run" != true ]]
1684	then
1685	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1686	if [[ ! -f $makefile ]]
1687	then
1688	printf "\n +++ file \"$makefile\" does not exist"
1689	locat=make; exit
1690	else
1691	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1692	fi
1693	fi
1694
1695
1696	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1697	if [[ $restart_run != true && "$add_source_path" != "" ]]
1698	then
1699
1700	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1701	if [[ ! -d $add_source_path ]]
1702	then
1703	printf "\n\n +++ WARNING: additional source code directory"
1704	printf "\n \"$add_source_path\" "
1705	printf "\n does not exist or is not a directory."
1706	printf "\n No source code will be used from this directory!\n"
1707	add_source_path=""
1708	sleep 3
1709	else
1710
1711	cd $add_source_path
1712	found=false
1713
1714	Names=$(ls -1 *.f90 2>&1)
1715	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1716	Names=$(ls -1 *.F90 2>&1)
1717	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1718	Names=$(ls -1 *.F 2>&1)
1719	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1720	Names=$(ls -1 *.f 2>&1)
1721	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1722	Names=$(ls -1 *.c 2>&1)
1723	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1724
1725	cd - > /dev/null
1726	cd SOURCES_FOR_RUN_$fname
1727
1728	# COPY MAKEFILE IF EXISTING
1729	if [[ -f $add_source_path/Makefile ]]
1730	then
1731	printf "\n\n *** user Makefile from directory"
1732	printf "\n \"$add_source_path\" is used \n"
1733	sleep 1
1734	cp $add_source_path/Makefile .
1735	fi
1736
1737	for dateiname in $AddFilenames
1738	do
1739	if [[ -f $dateiname ]]
1740	then
1741	printf "\n +++ source code file \"$dateiname\" found in additional"
1742	printf "\n source code directory \"$add_source_path\" "
1743	printf "\n but was also given with option \"-s\" which means that it should be taken"
1744	printf "\n from directory \"$source_path\"."
1745	locat=source; exit
1746	fi
1747
1748	cp $add_source_path/$dateiname .
1749	source_list="$source_list $dateiname"
1750
1751	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1752	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1753	then
1754	printf "\n\n +++ user file \"$dateiname\" "
1755	printf "\n is not listed in Makefile \n"
1756	locat=source; exit
1757	else
1758
1759	# Default User-Interface von der Liste entfernen, falls Datei
1760	# ein User-Interface enthaelt
1761	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1762	# then
1763	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1764	# then
1765	# rm -rf user_interface.f90
1766	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1767	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1768	# printf "\n since a user-interface is found in file"
1769	# printf "\n \"$add_source_path/$dateiname\" \n"
1770	# sleep 3
1771	# else
1772	if [[ $found = false ]]
1773	then
1774	found=true
1775	printf "\n\n *** following user file(s) added to the"
1776	printf " files to be translated:\n "
1777	fi
1778	printf "$dateiname "
1779	sleep 0.5
1780	fi
1781	done
1782	[[ $found = true ]] && printf "\n"
1783	cd - > /dev/null
1784	fi
1785	fi
1786
1787
1788	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1789	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1790	if [[ $restart_run != true && -n $package_list ]]
1791	then
1792
1793	cd $source_path
1794
1795	for package in $package_list
1796	do
1797
1798	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1799
1800	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1801	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1802	# LIEFERT
1803	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1804
1805
1806	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1807	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1808	for source_list_name in $package_source_list
1809	do
1810	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1811	then
1812
1813	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1814	ending=`echo $source_list_name \| cut -f2 -d.`
1815	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1816	then
1817	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1818	source_list="$source_list $source_list_name"
1819	fi
1820	fi
1821	done
1822	done
1823
1824	cd - > /dev/null
1825	fi
1826
1827
1828	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1829	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1830	# if [[ "$restart_run" != true ]]
1831	# then
1832	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1833	# if [[ ! -f $makefile ]]
1834	# then
1835	# printf "\n +++ file \"$makefile\" does not exist"
1836	# locat=make; exit
1837	# else
1838	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1839	# fi
1840	# fi
1841
1842	fi # do_compile=true
1843
1844
1845	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1846	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1847	if [[ $do_compile = true ]]
1848	then
1849
1850	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1851	# ZUSAMMENSETZEN
1852	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1853	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1854	then
1855	cpp_options="${cpp_options},-D__ibm=__ibm"
1856	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1857	then
1858	cpp_options="$cpp_options -D__nec"
1859	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1860	then
1861	cpp_options="$cpp_options -D__lc"
1862	else
1863	cpp_options="$cpp_options -D__$localhost"
1864	fi
1865
1866	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1867	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1868	then
1869	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1870	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1871	else
1872	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1873	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1874	fi
1875
1876	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1877	if [[ -n $package_list ]]
1878	then
1879	for package in $package_list
1880	do
1881	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1882	then
1883	if [[ $package != "dvrp_graphics+1PE" ]]
1884	then
1885	cpp_options="${cpp_options},-D__$package=__$package"
1886	else
1887	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1888	export use_seperate_pe_for_dvrp_output=true
1889	fi
1890	else
1891	if [[ $package != "dvrp_graphics+1PE" ]]
1892	then
1893	cpp_options="$cpp_options -D__$package"
1894	else
1895	cpp_options="$cpp_options -D__dvrp_graphics"
1896	export use_seperate_pe_for_dvrp_output=true
1897	fi
1898	fi
1899	done
1900	fi
1901
1902	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1903	if [[ -n $cpp_opts ]]
1904	then
1905	for popts in $cpp_opts
1906	do
1907	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1908	then
1909	cpp_options="${cpp_options},-D__$popts=__$popts"
1910	else
1911	cpp_options="$cpp_options -D__$popts"
1912	fi
1913	done
1914	fi
1915
1916	else
1917
1918
1919	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1920	if [[ $do_remote = false ]]
1921	then
1922	if [[ ! -f $executable ]]
1923	then
1924	printf "\n +++ executable file: $executable"
1925	printf "\n does not exist"
1926	locat=executable; exit
1927	fi
1928	fi
1929	fi
1930
1931
1932	# JOBMODUS FESTSTELLEN
1933	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1934	then
1935	jobmo=BATCH
1936	else
1937	jobmo=INTERACTIVE
1938	fi
1939
1940
1941	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1942	# DURCH BENUTZER ANDERWEITIG VEREINBART
1943	if [[ "$compiler_name" = "" ]]
1944	then
1945
1946	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1947	locat=compiler_name; exit
1948
1949	fi
1950
1951
1952	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1953	[[ $localhost = necriam ]] && compiler_name=mpif90
1954
1955
1956
1957	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1958	kennung=$RANDOM
1959	if [[ "$tmp_user_catalog" = "" ]]
1960	then
1961	if [[ $localhost = ibmh ]]
1962	then
1963	tmp_user_catalog=$SCRATCH
1964	elif [[ $localhost = nech ]]
1965	then
1966	tmp_user_catalog=$WRKSHR
1967	else
1968	tmp_user_catalog=/tmp
1969	fi
1970	fi
1971	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1972
1973
1974	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1975	# BESTIMMEN
1976	if [[ "$tmp_data_catalog" = "" ]]
1977	then
1978	if [[ $localhost = ibmb ]]
1979	then
1980	tmp_data_catalog=$WORK/mrun_restart_data
1981	elif [[ $localhost = nech ]]
1982	then
1983	tmp_data_catalog=$WRKSHR/mrun_restart_data
1984	else
1985	tmp_data_catalog=/tmp/mrun_restart_data
1986	fi
1987	fi
1988
1989
1990	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1991	# ERSETZEN
1992	if [[ $do_remote = false && $do_compile = true ]]
1993	then
1994	eval fopts=\"$fopts\"
1995	eval lopts=\"$lopts\"
1996	fi
1997
1998
1999
2000	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2001	fopts="$fopts $netcdf_inc $dvr_inc"
2002	lopts="$lopts $netcdf_lib $dvr_lib"
2003	ROPTS="$ropts"
2004	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck ) && -n $numprocs ]]
2005	then
2006	XOPT="-X $numprocs"
2007	fi
2008
2009
2010
2011	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2012	# GRAMM BENOETIGT
2013	done=false
2014	while [[ $done = false ]]
2015	do
2016	cputime=$cpumax
2017	if (( $cputime == 0 ))
2018	then
2019	if [[ $do_batch = true ]]
2020	then
2021	printf "\n +++ cpu-time is undefined"
2022	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2023	printf "\n >>> "
2024	read cputime 1>/dev/null 2>&1
2025	else
2026	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2027	fi
2028	else
2029	done=true
2030	fi
2031	cpumax=$cputime
2032	done
2033
2034	(( minuten = cputime / 60 ))
2035	(( sekunden = cputime - minuten * 60 ))
2036
2037
2038	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2039	if [[ $do_batch = true ]]
2040	then
2041	done=false
2042	while [[ $done = false ]]
2043	do
2044	if (( memory == 0 ))
2045	then
2046	printf "\n +++ memory demand is undefined"
2047	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2048	printf "\n >>> "
2049	read memory 1>/dev/null 2>&1
2050	else
2051	done=true
2052	fi
2053	done
2054	fi
2055
2056
2057	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2058	if [[ $do_remote = true && -z $remote_username ]]
2059	then
2060	while [[ -z $remote_username ]]
2061	do
2062	printf "\n +++ username on remote host \"$host\" is undefined"
2063	printf "\n >>> Please type username:"
2064	printf "\n >>> "
2065	read remote_username
2066	done
2067	mc="$mc -u$remote_username"
2068	fi
2069
2070
2071	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2072	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2073	then
2074	[[ "$mpilib" = "" ]] && export mpilib=mpt
2075	fi
2076
2077
2078
2079	###########################################################################
2080	# HEADER-AUSGABE
2081	###########################################################################
2082
2083
2084	calltime=$(date)
2085	printf "\n"
2086	# [[ $silent = false ]] && clear
2087	printf "#--------------------------------------------------------------# \n"
2088	printf "\| $version$calltime \| \n"
2089	printf "\| \| \n"
2090	spalte1="called on:"; spalte2=$localhost_realname
2091	printf "\| $spalte1$spalte2 \| \n"
2092	if [[ $local_compile = false ]]
2093	then
2094	if [[ $do_remote = true ]]
2095	then
2096	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2097	else
2098	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2099	fi
2100	else
2101	spalte1="compiling test only!"; spalte2=""
2102	fi
2103	printf "\| $spalte1$spalte2 \| \n"
2104	if [[ -n $numprocs ]]
2105	then
2106	spalte1="number of PEs:"; spalte2=$numprocs
2107	printf "\| $spalte1$spalte2 \| \n"
2108	fi
2109	if [[ -n $tasks_per_node ]]
2110	then
2111	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2112	printf "\| $spalte1$spalte2 \| \n"
2113	fi
2114	if [[ $threads_per_task != 1 ]]
2115	then
2116	spalte1="threads per task:"; spalte2="$threads_per_task"
2117	printf "\| $spalte1$spalte2 \| \n"
2118	fi
2119	printf "\| \| \n"
2120	if [[ $do_compile = true ]]
2121	then
2122	spalte1=cpp-directives:; spalte2=$cpp_options
2123	printf "\| $spalte1$spalte2 \| \n"
2124	zeile=$(echo "$cpp_options" \| cut -c41-)
2125	while [[ "$zeile" != "" ]]
2126	do
2127	spalte1=""
2128	spalte2=$zeile
2129	printf "\| $spalte1$spalte2 \| \n"
2130	zeile=$(echo "$zeile" \| cut -c41-)
2131	done
2132
2133	spalte1=compiler-options:; spalte2="$fopts"
2134	printf "\| $spalte1$spalte2 \| \n"
2135	zeile=$(echo "$fopts" \| cut -c41-)
2136	while [[ "$zeile" != "" ]]
2137	do
2138	spalte1=""
2139	spalte2=$zeile
2140	printf "\| $spalte1$spalte2 \| \n"
2141	zeile=$(echo "$zeile" \| cut -c41-)
2142	done
2143
2144	spalte1=linker-options:; spalte2=$lopts
2145	printf "\| $spalte1$spalte2 \| \n"
2146	zeile=$(echo "$lopts" \| cut -c41-)
2147	while [[ "$zeile" != "" ]]
2148	do
2149	spalte1=""
2150	spalte2=$zeile
2151	printf "\| $spalte1$spalte2 \| \n"
2152	zeile=$(echo "$zeile" \| cut -c41-)
2153	done
2154
2155	spalte1="main program":; spalte2=$mainprog
2156	printf "\| $spalte1$spalte2 \| \n"
2157	else
2158	spalte1=executable:; spalte2=$executable
2159	printf "\| $spalte1$spalte2 \| \n"
2160	fi
2161	printf "\| \| \n"
2162	spalte1="base name of files":; spalte2=$fname
2163	printf "\| $spalte1$spalte2 \| \n"
2164	if [[ $fname != $afname ]]
2165	then
2166	spalte1="base name of input files":; spalte2=$afname
2167	printf "\| $spalte1$spalte2 \| \n"
2168	fi
2169	spalte1="INPUT control list":; spalte2=$input_list
2170	printf "\| $spalte1$spalte2 \| \n"
2171	spalte1="OUTPUT control list":; spalte2=$output_list
2172	printf "\| $spalte1$spalte2 \| \n"
2173
2174	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2175	then
2176	spalte1="memory demand / PE":; spalte2="$memory MB"
2177	printf "\| $spalte1$spalte2 \| \n"
2178	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2179	printf "\| $spalte1$spalte2 \| \n"
2180	fi
2181
2182	if [[ $do_compile = true ]]
2183	then
2184	printf "\| \| \n"
2185	printf "\| Files to be compiled: \| \n"
2186	zeile=$source_list
2187	while [[ "$zeile" != "" ]]
2188	do
2189	spalte3=$zeile
2190	printf "\| $spalte3 \| \n"
2191	zeile=$(echo "$zeile" \| cut -c61-)
2192	done
2193	fi
2194	printf "#--------------------------------------------------------------#"
2195
2196
2197
2198	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2199	if [[ $do_trace = true ]]
2200	then
2201	(( i = 0 ))
2202	while (( i < iin ))
2203	do
2204	(( i = i + 1 ))
2205	if (( i == 1 ))
2206	then
2207	printf "\n\n >>> INPUT-file assignments:\n"
2208	fi
2209	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2210	done
2211	(( i = 0 ))
2212	while (( i < iout ))
2213	do
2214	(( i = i + 1 ))
2215	if (( i == 1 ))
2216	then
2217	printf "\n\n >>> OUTPUT-file assignments:\n"
2218	fi
2219	printf "\n ${localout[$i]} : ${pathout[$i]}"
2220	done
2221	(( i = 0 ))
2222	while (( i < iic ))
2223	do
2224	(( i = i + 1 ))
2225	if (( i == 1 ))
2226	then
2227	printf "\n\n >>> INPUT-commands:\n"
2228	fi
2229	printf "\n ${in_command[$i]}"
2230	done
2231	(( i = 0 ))
2232	while (( i < ioc ))
2233	do
2234	(( i = i + 1 ))
2235	if (( i == 1 ))
2236	then
2237	printf "\n\n >>> OUTPUT-commands:\n"
2238	fi
2239	printf "\n ${out_command[$i]}"
2240	done
2241	fi
2242
2243
2244	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2245	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2246	then
2247	antwort=dummy
2248	printf "\n\n"
2249	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2250	do
2251	printf " >>> everything o.k. (y/n) ? "
2252	read antwort
2253	done
2254	if [[ $antwort = n \|\| $antwort = N ]]
2255	then
2256	locat=user_abort; (( iec = 0 )); exit
2257	fi
2258	if [[ $do_batch = true ]]
2259	then
2260	printf " >>> batch-job will be created and submitted"
2261	else
2262	if [[ $local_compile = false ]]
2263	then
2264	printf " >>> MRUN will now continue to execute on this machine"
2265	else
2266	printf " >>> a test compilation will now be carried out on this machine"
2267	fi
2268	fi
2269	fi
2270
2271
2272
2273
2274	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2275	# CHENDE AKTIONEN DURCHGEFUEHRT
2276	if [[ $do_batch = false ]]
2277	then
2278
2279
2280	# TEMPORAEREN KATALOG ERZEUGEN
2281	mkdir -p $TEMPDIR
2282	chmod go+rx $TEMPDIR
2283	tmpcreate=true
2284
2285
2286	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2287	# TEMPORAERES VERZEICHNIS KOPIEREN
2288	if [[ $do_compile = true ]]
2289	then
2290
2291	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2292	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2293	if [[ $localhost = nech ]]
2294	then
2295	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2296	if mkdir -p $TEMPDIR_COMPILE
2297	then
2298	printf "\n *** \"$TEMPDIR_COMPILE\" "
2299	printf "\n is generated as temporary directory for cross compiling\n"
2300	else
2301	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2302	printf "\n needed for cross compilation failed"
2303	locat=compile
2304	exit
2305	fi
2306	else
2307	TEMPDIR_COMPILE=$TEMPDIR
2308	fi
2309
2310
2311	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2312	line=""
2313	grep "%depository_path" $config_file > tmp_mrun
2314	while read line
2315	do
2316	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2317	then
2318	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2319	then
2320	global_depository_path=`echo $line \| cut -d" " -s -f2`
2321	fi
2322	fi
2323	done < tmp_mrun
2324
2325	line=""
2326	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2327	while read line
2328	do
2329	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2330	then
2331	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2332	then
2333	local_depository_path=`echo $line \| cut -d" " -s -f2`
2334	fi
2335	fi
2336	done < tmp_mrun
2337
2338	if [[ "$local_depository_path" = "" ]]
2339	then
2340	if [[ "$global_depository_path" != "" ]]
2341	then
2342	local_depository_path=$global_depository_path
2343	else
2344	printf "\n\n +++ no depository path found in configuration file"
2345	printf "\n for local host \"$localhost\" "
2346	printf "\n please set \"\%depository_path\" in configuration file\n"
2347	locat=config_file; exit
2348	fi
2349	fi
2350	eval local_depository_path=$local_depository_path
2351	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2352	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2353
2354
2355	basename=`print $mainprog \| cut -f1 -d"."`
2356	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2357	if [[ ! -f $make_depository ]]
2358	then
2359	printf "\n"
2360	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2361	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2362	else
2363	cp $make_depository $TEMPDIR_COMPILE
2364	cd $TEMPDIR_COMPILE
2365	tar -xf $make_depository > /dev/null 2>&1
2366	cd - > /dev/null
2367	fi
2368
2369	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2370
2371	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2372	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2373	# MAKEFILE EINTRAGEN
2374	# cd $TEMPDIR_COMPILE
2375	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2376	# if [[ "$interface_file" != "" ]]
2377	# then
2378	# interface_file=`echo $interface_file \| cut -d"." -f1`
2379	# mv Makefile Makefile_old
2380	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2381	# fi
2382	# cd - > /dev/null
2383	else
2384	cp $executable ${TEMPDIR}/a.out
2385	fi
2386
2387
2388	# WECHSEL IN TEMPORAEREN KATALOG
2389	cd $TEMPDIR
2390	printf "\n *** changed to temporary directory: $TEMPDIR"
2391
2392
2393	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2394	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2395	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2396	# ERMITTELN
2397	(( i = 0 ))
2398	while (( i < iout ))
2399	do
2400	(( i = i + 1 ))
2401	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2402	then
2403	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2404	else
2405	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2406	fi
2407	done
2408
2409
2410	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2411	if [[ $do_compile = true ]]
2412	then
2413
2414
2415	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2416	printf "\n\n\n *** compilation starts \n$striche\n"
2417	printf " *** compilation with make using following options:\n"
2418	printf " make depository: $make_depository"
2419	printf " compilername: $compiler_name\n"
2420	printf " options: $fopts\n"
2421	printf " preprocessor-directives: $cpp_options \n"
2422	printf " linker-options: $lopts \n"
2423	printf " source code files: $source_list \n"
2424
2425	if [[ $localhost = nech ]]
2426	then
2427	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2428	cp $TEMPDIR_COMPILE/a.out .
2429	[[ $? != 0 ]] && compile_error=true
2430	rm -rf $TEMPDIR_COMPILE
2431	elif [[ $localhost = ibmh ]]
2432	then
2433	printf " compiler is called via ssh on \"plogin1\" \n"
2434	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2435	[[ ! -f a.out ]] && compile_error=true
2436	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2437	elif [[ $localhost = lcsgib ]]
2438	then
2439	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
2440	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2441	[[ ! -f a.out ]] && compile_error=true
2442	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2443	elif [[ $localhost = lcsgih ]]
2444	then
2445	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
2446	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2447	[[ ! -f a.out ]] && compile_error=true
2448	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2449	else
2450	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2451	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2452	fi
2453
2454	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2455	then
2456	printf "\n +++ error occured while compiling or linking"
2457	locat=compile
2458
2459	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2460	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2461	# then
2462	exit
2463	# else
2464	# locat=normal
2465	# fi
2466	else
2467	printf "$striche\n *** compilation finished \n"
2468	fi
2469	fi
2470
2471
2472	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2473	if [[ $local_compile = true ]]
2474	then
2475	cd $HOME
2476	rm -rf $TEMPDIR
2477	locat=local_compile; exit
2478	fi
2479
2480
2481	# BEREITSTELLEN DER INPUT-DATEIEN
2482	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2483	(( i = 0 ))
2484	while (( i < iin ))
2485	do
2486	(( i = i + 1 ))
2487	if (( i == 1 ))
2488	then
2489	printf "\n\n *** providing INPUT-files:\n$striche"
2490	fi
2491
2492
2493	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2494	if [[ "${transin[$i]}" = unavailable ]]
2495	then
2496	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2497	then
2498	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2499	printf "\n is not available!"
2500	else
2501	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2502	printf "\n is not available!"
2503	fi
2504	continue
2505	fi
2506
2507	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2508	files_for_pes=false; datentyp=file
2509	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2510	then
2511	files_for_pes=true; datentyp=directory
2512	actionin[$i]=""
2513	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2514	then
2515	actionin[$i]=""
2516	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2517	then
2518	files_for_pes=true; datentyp=directory
2519	actionin[$i]="ar"
2520	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2521	then
2522	actionin[$i]="ar"
2523	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2524	then
2525	files_for_pes=true; datentyp=directory
2526	actionin[$i]="fl"
2527	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2528	then
2529	actionin[$i]="fl"
2530	fi
2531
2532	if [[ $files_for_pes = true ]]
2533	then
2534	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2535	else
2536	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2537	fi
2538
2539	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2540	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2541	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2542	# SERVER ZU HOLEN
2543	if [[ "${actionin[$i]}" = fl ]]
2544	then
2545	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2546	if [[ $files_for_pes = false ]]
2547	then
2548	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2549	then
2550	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2551	got_tmp[$i]=true
2552	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2553	then
2554	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2555	printf "\n *** trying to use backup copy in \"$WORK\" "
2556	cp $WORK/${frelin[$i]} ${localin[$i]}
2557	else
2558	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2559	printf "\n or \"$tmp_data_catalog\" does not exist!"
2560	printf "\n *** trying to get copy from archive"
2561	actionin[$i]=ar
2562	fi
2563	else
2564	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2565	then
2566	mkdir ${localin[$i]}
2567	cd $tmp_data_catalog/${frelin[$i]}
2568	for file in $(ls *)
2569	do
2570	ln $file $TEMPDIR/${localin[$i]}
2571	done
2572	cd $TEMPDIR
2573	got_tmp[$i]=true
2574	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2575	then
2576	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2577	printf "\n *** trying to use backup copy in \"$WORK\" "
2578	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2579	else
2580	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2581	printf "\n or \"$tmp_data_catalog\" does not exist!"
2582	printf "\n *** trying to get copy from archive"
2583	actionin[$i]=ar
2584	fi
2585	fi
2586	fi
2587
2588
2589	# DATEI LIEGT AUF ARCHIV-SERVER
2590	if [[ "${actionin[$i]}" = ar ]]
2591	then
2592
2593	if [[ $files_for_pes = false ]]
2594	then
2595	printf "\n file will be restored from archive-system ($archive_system)!"
2596	else
2597	printf "\n directory will be restored from archive-system ($archive_system)!"
2598	fi
2599
2600	file_restored=false
2601
2602	if [[ $archive_system = asterix ]]
2603	then
2604	do_stagein=true
2605	(( stagein_anz = 0 ))
2606	while [[ $do_stagein = true ]]
2607	do
2608	if [[ $files_for_pes = false ]]
2609	then
2610	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2611	else
2612	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2613	fi
2614	cat STAGEIN_OUTPUT
2615	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2616	then
2617	file_restored=true
2618	do_stagein=false
2619	else
2620	(( stagein_anz = stagein_anz + 1 ))
2621	if (( stagein_anz == 10 ))
2622	then
2623	printf "\n +++ stagein stoped after 10 tries"
2624	locat=stage
2625	exit
2626	fi
2627	printf "\n +++ restoring from archive failed, trying again:"
2628	sleep 900
2629	fi
2630	done
2631	elif [[ $archive_system = DMF ]]
2632	then
2633	if [[ $files_for_pes = false ]]
2634	then
2635	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2636	locat=DMF
2637	exit
2638	else
2639	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2640	cp -r $ARCHIVE/${frelin[$i]} $PWD
2641	file_restored=true
2642	fi
2643	elif [[ $archive_system = tivoli ]]
2644	then
2645	if [[ $files_for_pes = false ]]
2646	then
2647	if [[ $localhost = lcsgih ]]
2648	then
2649	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2650	else
2651	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2652	fi
2653	else
2654	(( inode = 0 ))
2655	while (( inode < nodes ))
2656	do
2657	if [[ $localhost = lcsgih ]]
2658	then
2659	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2660	else
2661	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2662	fi
2663	(( inode = inode + 1 ))
2664	done
2665	fi
2666	file_restored=true
2667	elif [[ $archive_system = ut ]]
2668	then
2669	if [[ $files_for_pes = false ]]
2670	then
2671	cp $UT/${frelin[$i]} .
2672	else
2673	(( inode = 0 ))
2674	while (( inode < nodes ))
2675	do
2676	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2677	(( inode = inode + 1 ))
2678	done
2679	fi
2680	file_restored=true
2681	else
2682	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2683	locat=rearchive
2684	exit
2685	fi
2686
2687	if [[ $file_restored = true ]]
2688	then
2689
2690	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2691	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2692	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2693	if [[ $files_for_pes = false ]]
2694	then
2695	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2696	else
2697	mkdir $tmp_data_catalog/${frelin[$i]}
2698	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2699	fi
2700	got_tmp[$i]=true
2701
2702	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2703	mv ${frelin[$i]} ${localin[$i]}
2704
2705	fi
2706	fi
2707
2708
2709	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2710	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2711	then
2712
2713	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2714	then
2715
2716	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2717	printf "\n file will be provided for $numprocs processors"
2718	mkdir ${localin[$i]}
2719	ival=$numprocs
2720	(( ii = 0 ))
2721	while (( ii <= ival-1 ))
2722	do
2723	if (( ii < 10 ))
2724	then
2725	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2726	elif (( ii < 100 ))
2727	then
2728	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2729	elif (( ii < 1000 ))
2730	then
2731	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2732	else
2733	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2734	fi
2735	(( ii = ii + 1 ))
2736	done
2737
2738	else
2739
2740	if [[ $files_for_pes = true ]]
2741	then
2742
2743	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2744	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2745	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2746	# PER MOVE UMBENANNT WERDEN
2747	printf "\n providing $numprocs files for the respective processors"
2748	mkdir ${localin[$i]}
2749	if [[ $link_local_input = true ]]
2750	then
2751	printf " using ln -f\n"
2752	cd ${absnamein[$i]}
2753	for file in $(ls *)
2754	do
2755	ln -f $file ${localin[$i]}
2756	done
2757	cd $TEMPDIR
2758	fi
2759	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2760	if [[ ! -f "${localin[$i]}/_0000" ]]
2761	then
2762	if [[ $link_local_input = true ]]
2763	then
2764	printf " ln failed for .../_0000, using cp...\n"
2765	fi
2766	cp -r ${absnamein[$i]}/* ${localin[$i]}
2767	fi
2768
2769	else
2770	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2771	if [[ $link_local_input = true ]]
2772	then
2773	printf " using ln -f\n"
2774	ln -f ${absnamein[$i]} ${localin[$i]}
2775	fi
2776	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2777	if [[ ! -f "${localin[$i]}" ]]
2778	then
2779	if [[ $link_local_input = true ]]
2780	then
2781	printf " ln failed, using cp...\n"
2782	fi
2783	cp ${absnamein[$i]} ${localin[$i]}
2784	fi
2785	fi
2786	fi
2787	fi
2788
2789	done
2790	if (( i != 0 ))
2791	then
2792	printf "\n$striche\n *** all INPUT-files provided \n"
2793	fi
2794
2795
2796	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2797	(( i = 0 ))
2798	while (( i < iic ))
2799	do
2800	(( i = i + 1 ))
2801	if (( i == 1 ))
2802	then
2803	printf "\n\n *** execution of INPUT-commands:\n$striche"
2804	fi
2805	printf "\n >>> ${in_command[$i]}"
2806	eval ${in_command[$i]}
2807	if (( i == iic ))
2808	then
2809	printf "\n$striche\n"
2810	fi
2811	done
2812
2813
2814	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2815	cpurest=${cpumax}.
2816
2817
2818	# START DVR STREAMING SERVER
2819	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2820	then
2821	if [[ "$dvr_server" != "" ]]
2822	then
2823
2824	printf "\n\n *** preparing the dvr streaming server configuration file"
2825
2826	# Check, if a dvr server is already running
2827	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2828	if [[ "$running_dvrserver_id" != "" ]]
2829	then
2830
2831	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2832	printf "\n This server is used instead starting a new one!"
2833	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2834
2835	else
2836
2837	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2838	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2839	then
2840	cp ${PALM_BIN}/.dvrserver.config .
2841
2842	# Entering the BASEDIR, UID and GID into this file
2843	user_id=`id -u`
2844	group_id=`id -g`
2845	# & is needed as seperator, because TEMPDIR contains /
2846	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2847	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2848	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2849	mv .dvrserver.3 .dvrserver.config
2850	rm .dvrserver.1 .dvrserver.2
2851
2852	# Start dvr server in background, get his id and print on terminal
2853	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2854	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2855	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2856	local_dvrserver_running=.TRUE.
2857	else
2858	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2859	printf "\n \"$PALM_BIN\" "
2860	locat=dvr
2861	exit
2862	fi
2863
2864	fi
2865
2866	else
2867	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2868	fi
2869	fi
2870
2871
2872	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2873	# LESEN VON PALM)
2874	cat > ENVPAR << %%END%%
2875	&envpar run_identifier = '$fname', host = '$localhost',
2876	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2877	maximum_cpu_time_allowed = ${cpumax}.,
2878	revision = '$global_revision',
2879	local_dvrserver_running = $local_dvrserver_running /
2880
2881	%%END%%
2882
2883
2884	# PROGRAMMSTART
2885	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2886	PATH=$PATH:$TEMPDIR
2887
2888	# MPI debug option (argument checking, slows down execution due to increased latency)
2889	if [[ "$mpi_debug" = true ]]
2890	then
2891	export MPI_CHECK_ARGS=1
2892	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
2893	fi
2894
2895	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2896	then
2897	if [[ "$ENVIRONMENT" = BATCH ]]
2898	then
2899	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2900	then
2901	printf "\n +++ debug is allowed in interactive mode only"
2902	locat=debug
2903	exit
2904	fi
2905	fi
2906	if [[ $localhost = decalpha ]]
2907	then
2908	dxladebug a.out
2909	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2910	then
2911
2912	# SETUP THE IBM MPI ENVIRONMENT
2913	export MP_SHARED_MEMORY=yes
2914	export AIXTHREADS_SCOPE=S
2915	export OMP_NUM_THREADS=$threads_per_task
2916	export AUTHSTATE=files
2917	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2918
2919	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2920	export MP_ADAPTER_USE=shared
2921	export MP_CPU_USE=multiple
2922	export MP_TIMEOUT=1200
2923
2924	unset MP_TASK_AFFINITY
2925
2926	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2927	#(( ii = 1 ))
2928	#while (( ii <= $numprocs ))
2929	#do
2930	# echo $localhost_realname >> hostfile
2931	# (( ii = ii + 1 ))
2932	#done
2933	#export MP_HOSTFILE=hostfile
2934
2935	if [[ "$LOADLBATCH" = yes ]]
2936	then
2937	totalview poe a.out $ROPTS
2938	else
2939	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2940	export TVDSVRLAUNCHCMD=ssh
2941	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2942	fi
2943	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
2944	then
2945	# CURRENTLY NO DEBUGGER ON LCSGI
2946	if [[ $run_coupled_model = true ]]
2947	then
2948	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
2949	locat=debug
2950	exit
2951	else
2952	echo "no_coupling" > runfile_atmos
2953	fi
2954	(( ii = $numprocs / $threads_per_task ))
2955	export OMP_NUM_THREADS=$threads_per_task
2956	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
2957	if [[ $threads_per_task != 1 ]]
2958	then
2959	printf "\n threads per task: $threads_per_task"
2960	fi
2961	printf "\n\n"
2962	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
2963	then
2964	# export MPI_LAUNCH_TIMEOUT=360
2965	if [[ "$totalview" = true ]]
2966	then
2967	printf "\n running totalview debugger"
2968	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
2969	else
2970	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
2971	fi
2972	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
2973	then
2974	# ulimit -s 300000 # A too large stack size causes problems
2975	# export MV2_NUM_PORTS=2
2976	# export MV2_CPU_MAPPING=0:1:2:3
2977	if [[ "$totalview" = true ]]
2978	then
2979	printf "\n running totalview debugger"
2980	mpiexec -tv ./a.out $ROPTS < runfile_atmos
2981	else
2982	mpiexec ./a.out $ROPTS < runfile_atmos
2983	fi
2984	fi
2985	else
2986	printf "\n +++ no debug available on \"$localhost\" "
2987	printf "\n or not implemented in mrun so far"
2988	locat=debug
2989	exit
2990	fi
2991	else
2992	if [[ -n $numprocs ]]
2993	then
2994	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2995	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2996	then
2997	# SETUP THE IBM MPI ENVIRONMENT
2998	if [[ $host != ibmh ]]
2999	then
3000	export MP_SHARED_MEMORY=yes
3001	export AIXTHREAD_SCOPE=S
3002	export OMP_NUM_THREADS=$threads_per_task
3003	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3004	export AUTHSTATE=files
3005	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3006	# export MP_PRINTENV=yes
3007
3008	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3009	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3010	export MP_WAIT_MODE=poll
3011	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3012	fi
3013	if [[ "$LOADLBATCH" = yes ]]
3014	then
3015	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3016	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3017	then
3018	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3019	else
3020	if [[ $run_coupled_model = false ]]
3021	then
3022	if [[ "$ocean_file_appendix" = true ]]
3023	then
3024	echo "precursor_ocean" > runfile_atmos
3025	else
3026	echo "precursor_atmos" > runfile_atmos
3027	fi
3028	else
3029	(( iia = $numprocs_atmos / $threads_per_task ))
3030	(( iio = $numprocs_ocean / $threads_per_task ))
3031	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3032	printf "\n using $coupled_mode coupling"
3033	printf "\n\n"
3034	echo "coupled_run $iia $iio" > runfile_atmos
3035	fi
3036	poe ./a.out $ROPTS < runfile_atmos
3037	fi
3038	else
3039	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
3040	then
3041	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3042	elif [[ $localhost = ibmy ]]
3043	then
3044	if [[ -f $hostfile ]]
3045	then
3046	cp $hostfile hostfile
3047	else
3048	(( ii = 1 ))
3049	while (( ii <= $numprocs ))
3050	do
3051	echo $localhost_realname >> hostfile
3052	(( ii = ii + 1 ))
3053	done
3054	fi
3055	export MP_HOSTFILE=hostfile
3056	if [[ $run_coupled_model = false ]]
3057	then
3058	if [[ "$ocean_file_appendix" = true ]]
3059	then
3060	echo "precursor_ocean" > runfile_atmos
3061	else
3062	echo "precursor_atmos" > runfile_atmos
3063	fi
3064	else
3065	(( iia = $numprocs_atmos / $threads_per_task ))
3066	(( iio = $numprocs_ocean / $threads_per_task ))
3067	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3068	printf "\n using $coupled_mode coupling"
3069	printf "\n\n"
3070	echo "coupled_run $iia $iio" > runfile_atmos
3071	fi
3072	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3073
3074	else
3075	if [[ "$host_file" = "" ]]
3076	then
3077	printf "\n +++ no hostfile given in configuration file"
3078	locat=config_file
3079	exit
3080	else
3081	eval host_file=$host_file
3082	fi
3083	export MP_HOSTFILE=$host_file
3084	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3085	fi
3086	fi
3087	elif [[ $host = nech \|\| $host = necriam ]]
3088	then
3089	(( ii = nodes ))
3090	if [[ $ii = 1 ]]
3091	then
3092	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3093	export MPIPROGINF=YES
3094	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3095	echo "*** execution on single node with mpirun"
3096	mpirun -np $numprocs ./a.out $ROPTS
3097	else
3098	(( i = 0 ))
3099	while (( i < ii ))
3100	do
3101	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3102	(( i = i + 1 ))
3103	done
3104
3105	echo "#!/bin/sh" > mpi_exec_shell
3106	echo " " >> mpi_exec_shell
3107	echo "set -u" >> mpi_exec_shell
3108	echo "F_ERRCNT=0" >> mpi_exec_shell
3109	echo "MPIPROGINV=YES" >> mpi_exec_shell
3110	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3111	echo "cpurest=$cpurest" >> mpi_exec_shell
3112	echo "fname=$fname" >> mpi_exec_shell
3113	echo "localhost=$localhost" >> mpi_exec_shell
3114	echo "return_addres=$return_addres" >> mpi_exec_shell
3115	echo "return_username=$return_username" >> mpi_exec_shell
3116	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3117	echo "write_binary=$write_binary" >> mpi_exec_shell
3118	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3119	echo " " >> mpi_exec_shell
3120	echo "export F_ERRCNT" >> mpi_exec_shell
3121	echo "export MPIPROGINV" >> mpi_exec_shell
3122	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3123	echo "export cpurest" >> mpi_exec_shell
3124	echo "export fname" >> mpi_exec_shell
3125	echo "export localhost" >> mpi_exec_shell
3126	echo "export return_addres" >> mpi_exec_shell
3127	echo "export return_username" >> mpi_exec_shell
3128	echo "export tasks_per_node" >> mpi_exec_shell
3129	echo "export write_binary" >> mpi_exec_shell
3130	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3131	echo " " >> mpi_exec_shell
3132	echo "exec ./a.out" >> mpi_exec_shell
3133
3134	chmod u+x mpi_exec_shell
3135	export MPIPROGINF=YES
3136	mpirun -f multinode_config &
3137	wait
3138
3139	fi
3140	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
3141	then
3142
3143	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3144	# DOES NOT EXIST
3145	if [[ $host != lcsgih && $host != lcsgib ]]
3146	then
3147	if [[ -f $hostfile ]]
3148	then
3149	cp $hostfile hostfile
3150	else
3151	(( ii = 1 ))
3152	while (( ii <= $numprocs / $threads_per_task ))
3153	do
3154	echo $localhost_realname >> hostfile
3155	(( ii = ii + 1 ))
3156	done
3157	fi
3158	eval zeile=\"`head -n $ii hostfile`\"
3159	printf "\n *** running on: $zeile"
3160	fi
3161
3162	(( ii = $numprocs / $threads_per_task ))
3163	export OMP_NUM_THREADS=$threads_per_task
3164	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3165	if [[ $threads_per_task != 1 ]]
3166	then
3167	# increase stack size to unlimited, because large runs
3168	# may abort otherwise
3169	ulimit -Ss unlimited
3170	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3171	fi
3172	if [[ $run_coupled_model = false ]]
3173	then
3174	if [[ "$ocean_file_appendix" = true ]]
3175	then
3176	echo "precursor_ocean" > runfile_atmos
3177	else
3178	echo "precursor_atmos" > runfile_atmos
3179	fi
3180	printf "\n\n"
3181	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3182	then
3183	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3184	then
3185	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3186	# export MPI_DSM_DISTRIBUTE=1
3187	# MPI_DSM_CPULIST: pin MPI processes to cores
3188	if [[ $use_openmp = false ]]
3189	then
3190	if [[ "$sgi_feature" = ice2 ]]
3191	then
3192	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3193	else
3194	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3195	fi
3196	fi
3197	# MPI_IB_RAILS: use both IB rails on ICE2
3198	export MPI_BUFS_PER_HOST=512
3199	export MPI_IB_RAILS=2
3200	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3201	export MPI_CONNECTIONS_THRESHOLD=8192
3202	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3203	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3204
3205	# next is test for openmp usage
3206	# mpiexec -n $ii -pernode ./a.out $ROPTS < runfile_atmos
3207	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3208	then
3209	export MV2_NUM_PORTS=2
3210	# The default setting of MV2_CPU_MAPPING gives best results
3211	# export MV2_ENABLE_AFFINITY=1
3212	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3213	# if [[ "$sgi_feature" = ice2 ]]
3214	# then
3215	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3216	# else
3217	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3218	# fi
3219	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3220	if [[ $threads_per_task != 1 ]]
3221	then
3222	mpiexec -npernode 1 ./a.out $ROPTS < runfile_atmos
3223	else
3224	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
3225	fi
3226	fi
3227	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3228	then
3229	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3230	else
3231	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3232	fi
3233	else
3234
3235	# currently there is no full MPI-2 support on ICE and XT4
3236	(( iia = $numprocs_atmos / $threads_per_task ))
3237	(( iio = $numprocs_ocean / $threads_per_task ))
3238	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3239	printf "\n using $coupled_mode coupling"
3240	printf "\n\n"
3241
3242	if [[ $coupled_mode = "mpi2" ]]
3243	then
3244	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3245	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3246	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3247	then
3248
3249	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3250	then
3251	# export MPI_LAUNCH_TIMEOUT=360
3252	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3253	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3254	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3255	then
3256	# ulimit -s 300000 # A too large stack size causes problems
3257	# export MV2_NUM_PORTS=2
3258	# export MV2_CPU_MAPPING=0:1:2:3
3259	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3260	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3261	fi
3262
3263	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3264	then
3265
3266	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3267	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3268
3269	else
3270	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3271	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3272	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3273	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3274	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3275	fi
3276	wait
3277
3278	else
3279
3280	echo "coupled_run $iia $iio" > runfile_atmos
3281	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3282	then
3283
3284	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3285	then
3286	# export MPI_LAUNCH_TIMEOUT=360
3287	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3288	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3289	then
3290	# ulimit -s 300000 # A too large stack size causes problems
3291	# export MV2_NUM_PORTS=2
3292	# export MV2_CPU_MAPPING=0:1:2:3
3293	mpiexec ./a.out $ROPTS < runfile_atmos
3294	fi
3295
3296	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3297	then
3298
3299	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3300
3301	elif [[ $host = lck ]]
3302	then
3303	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3304	fi
3305	wait
3306	fi
3307
3308	# if [[ $scirocco = true ]]
3309	# then
3310	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
3311	# else
3312	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
3313	# fi
3314	fi
3315	elif [[ $host = decalpha ]]
3316	then
3317	dmpirun -np $numprocs a.out $ROPTS
3318	elif [[ $host = lctit ]]
3319	then
3320	export runfile=runfile.$kennung
3321
3322	echo "cd $PWD" > $runfile
3323	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
3324	echo "export cpurest=$cpurest" >> $runfile
3325	echo "export fname=$fname" >> $runfile
3326	echo "export localhost=$localhost" >> $runfile
3327	echo "export return_addres=$return_addres" >> $runfile
3328	echo "export return_username=$return_username" >> $runfile
3329	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3330	echo "export write_binary=$write_binary" >> $runfile
3331	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3332	echo "./a.out" >> $runfile
3333	chmod u+x $runfile
3334
3335	if [[ "$QUEUE" = interactive ]]
3336	then
3337	mpirun -np $numprocs a.out $ROPTS
3338	else
3339	(( mem_tsubame = $memory / 1024.0 ))
3340	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3341	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3342	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3343	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3344	fi
3345
3346	rm $runfile
3347	else
3348	mpprun -n $numprocs a.out $ROPTS
3349	fi
3350	[[ $? != 0 ]] && execution_error=true
3351
3352
3353	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3354	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3355	then
3356	apprentice
3357	fi
3358	else
3359	a.out $ROPTS
3360	fi
3361	fi
3362	if [[ $? != 0 \|\| $execution_error = true ]]
3363	then
3364
3365	# ABBRUCH BEI LAUFZEITFEHLER
3366	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3367	printf "\n +++ runtime error occured"
3368	locat=execution
3369	exit
3370	else
3371	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3372	printf "\n$striche\n *** execution finished \n"
3373
3374	# Stop the dvr streaming server and process the dvr output in order
3375	# to create dvrs- and html-files containing all streams
3376	if [[ "$dvrserver_id" != "" ]]
3377	then
3378	kill $dvrserver_id
3379	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3380
3381	# If there is a directory, data have been output by the
3382	# streaming server. Otherwise, user has chosen dvrp_output=local
3383	if [[ -d DATA_DVR ]]
3384	then
3385
3386	# Add the current dvr configuration file to the dvr output
3387	# directory
3388	cp .dvrserver.config DATA_DVR
3389
3390	# Process the dvr output (option -s for also generating
3391	# sequence mode data)
3392	process_dvr_output -d DATA_DVR -f $fname -s
3393
3394	else
3395
3396	# Process the local output
3397	process_dvr_output -l -d DATA_DVR -f $fname
3398
3399	fi
3400
3401	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3402	then
3403
3404	# Process dvr output generated in local mode (dvrp_output=local)
3405	process_dvr_output -l -d DATA_DVR -f $fname
3406
3407	fi
3408	fi
3409
3410
3411
3412	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3413	(( i = 0 ))
3414	while (( i < ioc ))
3415	do
3416	(( i = i + 1 ))
3417	if (( i == 1 ))
3418	then
3419	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3420	fi
3421	printf "\n >>> ${out_command[$i]}"
3422	eval ${out_command[$i]}
3423	if (( i == ioc ))
3424	then
3425	printf "\n$striche\n"
3426	fi
3427	done
3428
3429
3430	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3431	if [[ $do_trace = true ]]
3432	then
3433	printf "\n\n"
3434	ls -al
3435	fi
3436
3437
3438
3439	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3440	(( i = 0 ))
3441	while (( i < iout ))
3442	do
3443	(( i = i + 1 ))
3444	if (( i == 1 ))
3445	then
3446	printf "\n\n *** saving OUTPUT-files:\n$striche"
3447	fi
3448
3449	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3450	files_for_pes=false; filetyp=file
3451	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3452	then
3453	files_for_pes=true; filetyp=directory
3454	actionout[$i]=""
3455	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3456	then
3457	actionout[$i]=""
3458	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3459	then
3460	files_for_pes=true; filetyp=directory
3461	actionout[$i]="ar"
3462	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3463	then
3464	actionout[$i]="ar"
3465	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3466	then
3467	files_for_pes=true; filetyp=directory
3468	actionout[$i]="fl"
3469	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3470	then
3471	actionout[$i]="fl"
3472	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3473	then
3474	files_for_pes=true; filetyp=directory
3475	actionout[$i]="tr"
3476	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3477	then
3478	actionout[$i]="tr"
3479	fi
3480
3481	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3482	then
3483	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3484	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3485	then
3486	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3487	else
3488
3489
3490	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3491	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3492	# REMOTE-RECHNUNGEN
3493	if [[ "${actionout[$i]}" = tr ]]
3494	then
3495	if [[ $localhost != $fromhost ]]
3496	then
3497	if [[ $files_for_pes = false ]]
3498	then
3499	cps=""
3500	cst=""
3501	else
3502	cps=-c
3503	cst="/"
3504	fi
3505	if [[ $localhost = ibmb \|\| $localhost = nech ]]
3506	then
3507
3508	# TRANSFER IN EIGENSTAENDIGEM JOB
3509	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3510	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3511	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3512	if [[ $files_for_pes = false ]]
3513	then
3514	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3515	else
3516	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3517	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3518	fi
3519
3520	echo "set -x" > transfer_${localout[$i]}
3521	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3522
3523	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3524	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3525	printf "\n or higher cycle\n"
3526	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3527
3528	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3529
3530	if [[ $localhost = nech ]]
3531	then
3532	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3533	else
3534	if [[ "$LOGNAME" = b323013 ]]
3535	then
3536	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3537	else
3538	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3539	fi
3540	fi
3541
3542	else
3543
3544	# TRANSFER INNERHALB DIESES JOBS
3545	transfer_failed=false
3546	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3547	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3548	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3549	[[ $? != 0 ]] && transfer_failed=true
3550
3551	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3552	# LOKALER MASCHINE ANLEGEN
3553	if [[ $transfer_failed = true ]]
3554	then
3555	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3556	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3557
3558	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3559	# ANLEGEN.
3560	eval local_catalog=${pathout[$i]}
3561	if [[ ! -d $local_catalog ]]
3562	then
3563	printf " *** local directory does not exist. Trying to create:\n"
3564	printf " $local_catalog \n"
3565	mkdir -p $local_catalog
3566	fi
3567	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3568	transfer_problems=true
3569	fi
3570	fi
3571	else
3572
3573	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3574	actionout[$i]=""
3575	fi
3576	fi
3577
3578
3579	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3580	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3581	# REMOTE-RECHNUNGEN
3582	if [[ "${actionout[$i]}" = tra ]]
3583	then
3584	if [[ $localhost != $fromhost ]]
3585	then
3586	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3587	then
3588
3589	# TRANSFER IN EIGENSTAENDIGEM JOB
3590	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3591	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3592	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3593	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3594
3595	echo "set -x" > transfer_${localout[$i]}
3596	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3597
3598	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3599	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3600	printf "\n or higher cycle\n"
3601	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3602
3603	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3604
3605	if [[ $localhost = nech ]]
3606	then
3607	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3608	else
3609	if [[ $LOGNAME = b323013 ]]
3610	then
3611	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3612	else
3613	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3614	fi
3615	fi
3616
3617	else
3618
3619	# TRANSFER INNERHALB DIESES JOBS
3620	transfer_failed=false
3621	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3622	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3623	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3624	[[ $? != 0 ]] && transfer_failed=true
3625
3626	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3627	# LOKALER MASCHINE ANLEGEN
3628	if [[ $transfer_failed = true ]]
3629	then
3630	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3631	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3632
3633	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3634	# ANLEGEN
3635	eval local_catalog=${pathout[$i]}
3636	if [[ ! -d $local_catalog ]]
3637	then
3638	printf " *** local directory does not exist. Trying to create:\n"
3639	printf " $local_catalog \n"
3640	mkdir -p $local_catalog
3641	fi
3642
3643	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3644	transfer_problems=true
3645	fi
3646	fi
3647	else
3648
3649	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3650	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3651	actionout[$i]=a
3652	fi
3653	fi
3654
3655
3656	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3657	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3658	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3659	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3660	if [[ "${actionout[$i]}" = fl ]]
3661	then
3662	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3663	chmod g+rx $tmp_data_catalog
3664	if [[ $files_for_pes = false ]]
3665	then
3666	printf "\n >>> OUTPUT: ${localout[$i]} to"
3667	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3668	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3669	else
3670	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3671	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3672	mkdir $tmp_data_catalog/${frelout[$i]}
3673	cd ${localout[$i]}
3674	for file in $(ls *)
3675	do
3676	ln -f $file $tmp_data_catalog/${frelout[$i]}
3677	done
3678	cd $TEMPDIR
3679	fi
3680
3681
3682	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3683	if [[ $store_on_archive_system = true ]]
3684	then
3685
3686	if [[ $archive_system = asterix ]]
3687	then
3688	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3689	if [[ $files_for_pes = false ]]
3690	then
3691	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3692	else
3693	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3694	fi
3695	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3696	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3697	echo "then" >> archive_${frelout[$i]}
3698	echo " do_stageout=false" >> archive_${frelout[$i]}
3699	echo "else" >> archive_${frelout[$i]}
3700	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3701	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3702	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3703	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3704	if [[ $files_for_pes = false ]]
3705	then
3706	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3707	else
3708	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3709	fi
3710	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3711	echo "fi" >> archive_${frelout[$i]}
3712	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3713	elif [[ $archive_system = DMF ]]
3714	then
3715	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3716	if [[ $files_for_pes = false ]]
3717	then
3718	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3719	locat=DMF
3720	exit
3721	else
3722	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3723	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3724	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3725	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3726	fi
3727	elif [[ $archive_system = tivoli ]]
3728	then
3729	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3730	if [[ $files_for_pes = false ]]
3731	then
3732	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3733	echo "set -x" >> archive_${frelout[$i]}
3734	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3735	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3736	else
3737
3738	echo "set -x" >> archive_${frelout[$i]}
3739	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3740	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3741	cd $tmp_data_catalog
3742	all_files=`ls -1 ${frelout[$i]}/*`
3743	cd - > /dev/null
3744	(( inode = 0 ))
3745	(( tp1 = tasks_per_node + 1 ))
3746	while (( inode < nodes ))
3747	do
3748	# echo "*** all_files = \"$all_files\" "
3749	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3750	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3751	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3752	# echo "*** files = \"$files\" "
3753	# echo "*** all_files = \"$all_files\" "
3754	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3755	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3756	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3757	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3758	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3759	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3760	(( inode = inode + 1 ))
3761	done
3762	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3763	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3764	fi
3765	elif [[ $archive_system = ut ]]
3766	then
3767	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3768	if [[ $files_for_pes = false ]]
3769	then
3770	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3771	echo "set -x" >> archive_${frelout[$i]}
3772	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3773	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3774	else
3775
3776	echo "set -x" >> archive_${frelout[$i]}
3777	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3778	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3779	cd $tmp_data_catalog
3780	all_files=`ls -1 ${frelout[$i]}/*`
3781	cd - > /dev/null
3782	(( inode = 0 ))
3783	(( tp1 = tasks_per_node + 1 ))
3784	while (( inode < nodes ))
3785	do
3786	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3787	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3788	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3789	(( inode = inode + 1 ))
3790	done
3791	fi
3792	elif [[ $archive_system = none ]]
3793	then
3794	printf " +++ archiving on $localhost not available!\n"
3795	fi
3796
3797	if [[ $archive_system != none ]]
3798	then
3799	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3800	then
3801	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3802	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
3803	elif [[ $localhost = nech ]]
3804	then
3805	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3806	fi
3807	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3808	fi
3809	else
3810	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
3811	fi
3812
3813
3814	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3815	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3816	if [[ $files_for_pes = false ]]
3817	then
3818	cat /dev/null > ${pathout[$i]}
3819	else
3820	mkdir -p ${pathout[$i]}
3821	fi
3822
3823	fi
3824
3825
3826	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3827	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3828	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3829	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3830	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3831	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3832	if [[ "${actionout[$i]}" = ar ]]
3833	then
3834	if [[ $files_for_pes = false ]]
3835	then
3836	printf "\n >>> OUTPUT: ${localout[$i]} to"
3837	printf "\n ${pathout[$i]}"
3838	printf "\n File will be copied to archive-system ($archive_system) !\n"
3839	else
3840	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3841	printf "\n ${pathout[$i]}"
3842	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3843	fi
3844	mv ${localout[$i]} ${frelout[$i]}
3845
3846	file_saved=false
3847
3848	if [[ $archive_system = asterix ]]
3849	then
3850	do_stageout=true
3851	(( stageout_anz = 0 ))
3852	while [[ $do_stageout = true ]]
3853	do
3854	if [[ $files_for_pes = false ]]
3855	then
3856	stageout ${frelout[$i]} > STAGE_OUTPUT
3857	else
3858	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3859	fi
3860	cat STAGE_OUTPUT
3861	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3862	then
3863	file_saved=true
3864	do_stageout=false
3865	else
3866	if [[ $files_for_pes = false ]]
3867	then
3868	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3869	else
3870	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3871	fi
3872	(( stageout_anz = stageout_anz + 1 ))
3873	if (( stageout_anz == 10 ))
3874	then
3875	printf "\n +++ stoped after 10 unsuccessful tries!"
3876	archive_save=false
3877	do_stageout=false
3878	else
3879	printf "\n *** new try to store on archive after 15 min:"
3880	sleep 900
3881	fi
3882	fi
3883	done
3884	elif [[ $archive_system = DMF ]]
3885	then
3886	if [[ $files_for_pes = false ]]
3887	then
3888	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3889	locat=DMF
3890	exit
3891	else
3892	rm -rf $ARCHIVE/${frelout[$i]}
3893	cp -r ${frelout[$i]} $ARCHIVE
3894	fi
3895	file_saved=true
3896	elif [[ $archive_system = tivoli ]]
3897	then
3898	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3899	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3900	# GELEGT WERDEN
3901	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3902	chmod g+rx $tmp_data_catalog
3903	if [[ $files_for_pes = false ]]
3904	then
3905	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3906	else
3907	mkdir $tmp_data_catalog/${frelout[$i]}
3908	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3909	fi
3910
3911	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3912	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3913	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3914	if [[ $files_for_pes = false ]]
3915	then
3916	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3917	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3918	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3919	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3920	else
3921	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3922	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3923	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3924	fi
3925
3926	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3927	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3928	file_saved=true
3929
3930	elif [[ $archive_system = ut ]]
3931	then
3932	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3933	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3934	# GELEGT WERDEN
3935	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3936	chmod g+rx $tmp_data_catalog
3937	if [[ $files_for_pes = false ]]
3938	then
3939	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3940	else
3941	mkdir $tmp_data_catalog/${frelout[$i]}
3942	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3943	fi
3944
3945	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3946	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3947	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3948	if [[ $files_for_pes = false ]]
3949	then
3950	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3951	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3952	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3953	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3954	else
3955	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3956	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3957	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3958	fi
3959
3960	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3961	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3962	file_saved=true
3963
3964	else
3965	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3966	archive_save=false
3967	fi
3968	if [[ $file_saved = true ]]
3969	then
3970	if [[ $files_for_pes = false ]]
3971	then
3972	cat /dev/null > ${pathout[$i]}
3973	else
3974	mkdir -p ${pathout[$i]}
3975	fi
3976	fi
3977	fi
3978
3979	# APPEND AUF LOKALER MASCHINE
3980	if [[ "${actionout[$i]}" = "a" ]]
3981	then
3982	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3983	cat ${localout[$i]} >> ${pathout[$i]}
3984	fi
3985
3986	# KOPIEREN AUF LOKALER MASCHINE
3987	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3988	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3989	then
3990
3991	# KOPIEREN AUF EINPROZESSORMASCHINE
3992	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3993	then
3994	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3995	if [[ $link_local_output = true ]]
3996	then
3997	printf " using ln -f\n"
3998	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3999	fi
4000	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4001	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4002	then
4003	if [[ $link_local_output = true ]]
4004	then
4005	printf " ln failed, using cp...\n"
4006	fi
4007	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4008	fi
4009	else
4010	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4011	if [[ $link_local_output = true ]]
4012	then
4013	printf " using ln -f\n"
4014	ln -f ${localout[$i]} ${pathout[$i]}
4015	fi
4016	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4017	if [[ ! -f "${pathout[$i]}" ]]
4018	then
4019	if [[ $link_local_output = true ]]
4020	then
4021	printf " ln failed, using cp...\n"
4022	fi
4023	cp ${localout[$i]} ${pathout[$i]}
4024	fi
4025	fi
4026
4027	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4028	then
4029
4030	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4031	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4032	# WIRD DANN KOPIERT
4033	# PER MOVE UMBENANNT WERDEN
4034	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4035	if [[ $link_local_output = true ]]
4036	then
4037	printf " using ln -f\n"
4038	mkdir ${pathout[$i]}
4039	cd ${localout[$i]}
4040	for file in $(ls *)
4041	do
4042	ln -f $file ${pathout[$i]}
4043	done
4044	cd $TEMPDIR
4045	fi
4046	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4047	if [[ ! -f "${pathout[$i]}/_0000" ]]
4048	then
4049	if [[ $link_local_output = true ]]
4050	then
4051	printf " ln failed for .../_0000, using cp...\n"
4052	fi
4053	cp -r ${localout[$i]} ${pathout[$i]}
4054	fi
4055
4056	fi
4057	fi
4058	done
4059	if (( i != 0 ))
4060	then
4061	if [[ $transfer_problems = true ]]
4062	then
4063	printf "\n$striche\n *** OUTPUT-files saved"
4064	printf "\n +++ WARNING: some data transfers failed! \n"
4065	else
4066	printf "\n$striche\n *** all OUTPUT-files saved \n"
4067	fi
4068	fi
4069
4070
4071	# EVENTUELL FOLGEJOB STARTEN
4072	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4073	if [[ -f CONTINUE_RUN ]]
4074	then
4075
4076	if [[ $archive_save = true ]]
4077	then
4078
4079	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4080	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4081	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4082	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4083	# HANDEN
4084	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4085	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4086	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4087	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4088	then
4089	mc=`echo $mc \| sed 's/#/f/g'`
4090	fi
4091
4092
4093	# JOB STARTEN
4094	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4095	echo " $mc"
4096	printf "\n$striche\n"
4097	if [[ $localhost != $fromhost ]]
4098	then
4099
4100	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
4101	then
4102	echo "*** ssh will be used to initiate restart-runs!"
4103	echo " return_addres=\"$return_addres\" "
4104	echo " return_username=\"$return_username\" "
4105	if [[ $return_addres = 172.20.25.41 ]]
4106	then
4107	# WORKAROUND AUF SCIROCCO AM TIT
4108	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
4109	elif [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4110	then
4111	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4112	else
4113	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4114	fi
4115	else
4116	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4117	locat=restart; exit
4118	fi
4119
4120	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4121	# DER AKTUELLE JOB ENDET
4122	if [[ $queue = special1q ]]
4123	then
4124	sleep 120
4125	else
4126	sleep 30
4127	fi
4128
4129	else
4130
4131	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4132	# RUFEN WERDEN, AUSSER AUF lcfimm
4133	cd $LOCAL_PWD
4134	if [[ $localhost = lcfimm ]]
4135	then
4136	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4137	else
4138	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4139	fi
4140	cd - > /dev/null
4141	fi
4142	printf "\n$striche\n *** restart-run initiated \n"
4143
4144
4145	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4146	# GEHOLT WORDEN SIND, LOESCHEN
4147	(( i = 0 ))
4148	while (( i < iin ))
4149	do
4150	(( i = i + 1 ))
4151	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4152	then
4153	rm -r $tmp_data_catalog/${frelin[$i]}
4154	fi
4155	done
4156
4157	else
4158
4159	printf "\n +++ no restart-run possible, since errors occured"
4160	printf "\n during the archive process"
4161	fi
4162
4163	fi
4164
4165
4166
4167	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4168	if [[ "$email_notification" != "none" ]]
4169	then
4170
4171	if [[ $localhost != $fromhost ]]
4172	then
4173	if [[ -f CONTINUE_RUN ]]
4174	then
4175	echo "PALM restart run necessary" > email_text
4176	echo "description header of actual run:" >> email_text
4177	cat CONTINUE_RUN >> email_text
4178	echo "mrun-command to restart:" >> email_text
4179	echo "$mc" >> email_text
4180	else
4181	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4182	fi
4183	mail $email_notification < email_text
4184	printf "\n *** email notification sent to \"$email_notification\" "
4185	fi
4186	fi
4187
4188
4189
4190	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4191	cd $HOME
4192	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4193
4194	else
4195
4196
4197	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4198	# CHENDE AKTIONEN DURCHGEFUEHRT
4199
4200	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4201	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4202	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4203	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4204	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4205	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4206	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4207	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4208	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4209	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4210	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4211	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4212	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4213	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4214	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4215	if [[ $use_openmp = true ]]
4216	then
4217	mrun_com=${mrun_com}" -O"
4218	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
4219	else
4220	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4221	fi
4222	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4223	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4224	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4225	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4226	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4227	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4228	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4229	if [[ $do_remote = true ]]
4230	then
4231	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4232	fi
4233
4234
4235	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4236	jobfile=jobfile.$RANDOM
4237
4238
4239	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4240	echo "mkdir $TEMPDIR" >> $jobfile
4241	echo "cd $TEMPDIR" >> $jobfile
4242
4243
4244	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4245	if [[ $do_trace = true ]]
4246	then
4247	echo "set -x" >> $jobfile
4248	else
4249	echo "set +vx" >> $jobfile
4250	fi
4251
4252
4253	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4254	# DATEI FUER DEN JOB
4255	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4256	then
4257
4258	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4259	# KOPIEREN
4260	if [[ $restart_run != true ]]
4261	then
4262	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4263	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4264	fi
4265
4266	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4267	echo "set -x" >> $jobfile
4268	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4269	echo "export SOURCES_COMPLETE=true" >> $jobfile
4270
4271	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4272	# ARBEITSVERZEICHNIS VERSCHIEBEN
4273	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4274	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4275	echo "execute_mrun=true" >> $jobfile
4276	echo " " >> $jobfile
4277
4278	else
4279
4280	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4281	# SOWIE GEGEBENENFALLS DES MAKEFILES
4282	if [[ $do_compile = true ]]
4283	then
4284
4285	source_catalog=SOURCES_FOR_RUN_$fname
4286
4287	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4288	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4289	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4290	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4291	echo "export SOURCES_COMPLETE=true" >> $jobfile
4292	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4293
4294	for filename in $source_list
4295	do
4296	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4297	echo "cat > $filename << \"%END%\"" >> $jobfile
4298	cat $source_catalog/$filename >> $jobfile
4299	echo " " >> $jobfile
4300	echo "%END%" >> $jobfile
4301	echo " " >> $jobfile
4302	done
4303
4304	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4305	echo "cat > Makefile << \"%END%\"" >> $jobfile
4306	cat $source_catalog/Makefile >> $jobfile
4307	echo " " >> $jobfile
4308	echo "%END%" >> $jobfile
4309	echo " " >> $jobfile
4310
4311	echo "cd - > /dev/null" >> $jobfile
4312
4313	fi
4314
4315
4316	# ABSPEICHERN DER KONFIGURATIONSDATEI
4317	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4318	echo "cat > $config_file << \"%END%\"" >> $jobfile
4319	cat $config_file >> $jobfile
4320	echo "%END%" >> $jobfile
4321	echo " " >> $jobfile
4322
4323
4324	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4325	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4326	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4327	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4328	echo "%END%" >> $jobfile
4329	if [[ $host = lctit ]]
4330	then
4331	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
4332	echo "mv mrun_new $mrun_script_name" >> $jobfile
4333	fi
4334	echo "chmod u+x $mrun_script_name" >> $jobfile
4335	echo "execute_mrun=true" >> $jobfile
4336	echo " " >> $jobfile
4337
4338	fi
4339
4340
4341	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4342	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4343	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4344	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4345	if [[ $do_remote = true ]]
4346	then
4347	(( i = 0 ))
4348	while (( i < iin ))
4349	do
4350	(( i = i + 1 ))
4351	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4352	if [[ "${transin[$i]}" = job ]]
4353	then
4354	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4355	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4356	echo " " >> $jobfile
4357	echo "%END%" >> $jobfile
4358	else
4359	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4360	fi
4361
4362	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4363	echo "if [[ \$? = 1 ]]" >> $jobfile
4364	echo "then" >> $jobfile
4365	echo " echo \" \" " >> $jobfile
4366	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4367	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4368	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4369	echo " execute_mrun=false" >> $jobfile
4370	echo "fi" >> $jobfile
4371	done
4372	fi
4373
4374	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4375	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4376	echo "LOCAL_PWD=$working_directory" >> $jobfile
4377	echo "export LOCAL_PWD" >> $jobfile
4378
4379	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4380	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4381	echo "export LOCAL_MRUN_PATH" >> $jobfile
4382
4383	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4384	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4385	then
4386	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4387	fi
4388
4389	# MRUN AUF ZIELRECHNER AUFRUFEN
4390	echo "set -x" >> $jobfile
4391	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4392
4393	echo 'ls -al; echo `pwd`' >> $jobfile
4394	echo "cd \$HOME" >> $jobfile
4395	echo "rm -rf $TEMPDIR" >> $jobfile
4396
4397
4398
4399
4400	# JOB PER SUBJOB STARTEN
4401	if [[ $silent = false ]]
4402	then
4403	printf "\n "
4404	else
4405	printf "\n\n"
4406	fi
4407
4408	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4409	rm -rf $jobfile
4410
4411
4412	fi # ENDE REMOTE-TEIL
4413
4414
4415
4416	# ENDE DER PROZEDUR

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