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source: palm/trunk/SCRIPTS/mrun @ 416

Last change on this file since 416 was 416, checked in by weinreis, 15 years ago
mrun and subjob modified for archiving
Property svn:keywords set to `Id Rev`
File size: 168.3 KB

Rev	Line
[71]	1	#!/bin/ksh
[66]	2	# mrun - Plot-Shellskript
[169]	3	# $Id: mrun 416 2009-12-18 08:42:25Z weinreis $
[1]	4
	5	# Prozedur zum Starten von Modellaeufen
	6
	7	# letzte Aenderung:
	8	# 03/03/94 - Siggi - Entwicklungsbeginn
	9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
	10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
	11	# zelne Variable exportiert. Dies ist noetig, weil an-
	12	# sonsten irgendein Speicher ueberlaeuft und von mrun
	13	# aufgerufene Programme (z.B. stageout) mit Fehlern
	14	# abbrechen (too many arguments)
	15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
	16	# defaultmaessig im RRZN-Profile eingeschaltet
	17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
	18	# wegfallen
	19	# 25/04/00 - Siggi - Version 1.5
	20	# remote_addres und remote_user in return_addres bzw.
	21	# return_username umbenannt, return_username wird dem
	22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
	23	# Neue Variable remote_username, die beim interaktiven
	24	# mrun-Aufruf zwingend ueber die neue Option -u oder
	25	# in der Konfigurationsdatei angegeben werden muss.
	26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
	27	# Version 1.7
	28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
	29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
	30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
	31	# zu bestimmen; Praeprozessoroptionen haben nun alle
	32	# die Form -Dtext=text, weil auf IBM sonst text durch
	33	# die leere Zeichenkette ersetzt wird
	34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
	35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
	36	# (-D$OMP=OMP) in order to avoid problems with
	37	# OMP_NUM_THREADS
	38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
	39	# tar files, one for each node used
	40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
	41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
	42	# 17/01/05 - Siggi - job for data transfer to local machine now within
	43	# job class c1 (HLRN)
	44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
	45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
	46	# base filename and cycle number
	47	# 16/02/05 - Gerald - hababai validated
	48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
	49	# 29/03/05 - Marcus - berni*-en0 validated
	50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
	51	# 24/04/05 - Siggi - netcdf support on lcmuk
	52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
	53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
	54	# number) can now be used within interactive runs
	55	# 12/05/05 - Siggi - netcdf support on ibm
	56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
	57	# 18/05/05 - Siggi - netcdf support on nec
	58	# 24/05/05 - Siggi - netcdf support on ibms
	59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
	60	# to 30 seconds
	61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
	62	# PATH is temporarily set)
	63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
	64	# caused warnings in the job protocol
	65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
	66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
	67	# removed
	68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
	69	# realized by file attribute trpe
	70	# 28/10/05 - Siggi - if existing, the file extension is output in case
	71	# of missing input file - no job abort in case of
	72	# missing input files with file extensions
	73	# (preliminary solution)
	74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
	75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
	76	# 07/12/05 - Siggi - gallego and elephanta admitted
	77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
	78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
	79	# 20/01/06 - Siggi - cpp directive for ibmy
	80	# 09/02/06 - Siggi - ibmy admitted for batch mode
	81	# 13/04/06 - Siggi - ostria admitted
	82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
	83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
	84	# optimization of OpenMP runs (option stacksize is
	85	# necessary for large gridpoint numbers because
	86	# otherwise a segmentation fault occurs)
	87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
	88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
	89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
	90	# 20/09/06 - Marcus - add DVRP library on nech
	91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
	92	# on local NAMELIST file ENVPAR
	93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
	94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
	95	# 06/02/07 - Siggi - add DVRP library on lcmuk
	96	# 07/02/07 - Siggi - revision of source code handling, source code is
	97	# now expected in directory given by source_path and
	98	# not in the current working directory, source code
	99	# files provided in add_source_path are allways
	100	# compiled, source code to be compiled is allways
	101	# sampled in SOURCES_FOR_RUN_$fname which is a
	102	# subdirectory of the current working directory,
[5]	103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
[1]	104	# adapted for RIAM (neck)
[5]	105	# bugfix for cycle number of output file (extout)
	106	# all hpmuk-related code removed
[14]	107	# 14/02/07 - Siggi - dvrp support for neck added
[21]	108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
[26]	109	# mrun_path replaced by PALM_BIN,
	110	# all machines are calling interpret_config.x
[66]	111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
	112	# output
[69]	113	# 16/03/07 - Siggi - adjustments for lctit
[78]	114	# 29/03/07 - Siggi - global revision transfered to batch job by new
	115	# option -G
[82]	116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
	117	# + netcdf/dvrp-options are read from configuration
	118	# file, host identifier (local_host) is read from
	119	# config file, code related to ftp filetransfer
	120	# removed (incl. option -f)
[97]	121	# 19/06/07 - Siggi - time limit for cdata jobs increased
[102]	122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
	123	# if new option -Y (coupling) is given,
	124	# output of executables to aout_output removed,
	125	# messages are immediately written to stdout instead
[108]	126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
	127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
	128	# variables out to the nodes in coupled mode -disabled-
	129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
[109]	130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
	131	# environment variables out to the nodes in coupled mode
[118]	132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
	133	# suggestions
[122]	134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
	135	# argument -g group_number, admit all sla* node_usage
	136	# queues
[129]	137	# 30/10/07 - Marcus - further adjustments for queues on lctit
[149]	138	# 14/02/08 - Bjoern - link of restart files with long file name possible
	139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
	140	# true, mrun tries "ln -f" on local output and resorts
	141	# to "cp" or "cp -r" on error
[164]	142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
	143	# which allows the user to choose his own job catalog
	144	# by setting job_catalog in the configuration file
	145	# (default is ~/job_queue),
[172]	146	# workaround for mpiexec with -env option,
[164]	147	# adjustments for lcxt4 (Bergen Center for Computational
	148	# Science)
[183]	149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
	150	# true, mrun tries "ln -f" on local input and resorts
	151	# to "cp" or "cp -r" on error
[180]	152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
[179]	153	# 14/07/08 - Siggi - adjustments for lcsgih
[188]	154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
[204]	155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
[210]	156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
	157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
	158	# argument
[211]	159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
	160	# file
	161	# 11/11/08 - Siggi - rules for using user code files changed: user
	162	# code splitted into one file per subroutine,
	163	# user can provide his/her own makefile, only
	164	# default source-code filenames are allowed
[215]	165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
[221]	166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
	167	# with environment variable mpilib
[223]	168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
	169	# using environment variable totalview
[246]	170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
	171	# interactive runs
[253]	172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
[260]	173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
	174	# dvr streaming server is automatically started using
	175	# new variable dvr_server and a configuration file
	176	# .dvrserver.config,
[261]	177	# processing of dvr output files using new script
	178	# process_dvr_output implemented, in order to make
	179	# dvr application more user friendly
[265]	180	# 20/03/09 - Marcus - update of n1ge command for lctit
[291]	181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
	182	# to be followed by a coupled atmosphere-ocean run
[343]	183	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
	184	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
[352]	185	# 08/07/09 - Siggi - default value for email_notification is none,
	186	# option -e added to subjob
[359]	187	# 19/08/09 - Marcus - MPI debug option
[362]	188	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
[367]	189	# 25/08/09 - BjornM - adpated for lck
[369]	190	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
[372]	191	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
[397]	192	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
	193	# switches on archiving, archiving on SGI-ICE enabled
[416]	194	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
	195	# adjustment for special1q
	196	# 18/12/09 - Carolin- modification of archiving (permq)
	197	#
[1]	198
	199	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	200
	201	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	202	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	203	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	204
	205	AddFilenames=""
	206	additional_conditions=""
	207	add_source_path=""
	208	afname=""
	209	archive_save=true
	210	archive_system=none
	211	compiler_name=""
	212	cond1=""
	213	cond2=""
	214	config_file=.mrun.config
[206]	215	coupled_dist=""
	216	coupled_mode="mpi1"
[1]	217	cpp_opts=""
[82]	218	cpp_options=""
[1]	219	cpumax=0
	220	cpurest=0
	221	delete_temporary_catalog=true
	222	do_batch=false
	223	do_compile=true
	224	do_remote=false
	225	do_stagein=true
	226	do_stageout=true
	227	do_trace=false
[352]	228	email_notification="none"
[1]	229	exclude=""
	230	executable=""
	231	execution_error=false
[67]	232	fimm=false
[1]	233	fname=test
	234	fromhost=""
[78]	235	global_revision=""
[122]	236	group_number=none
[1]	237	host=""
	238	host_file=""
	239	hp=""
	240	ignore_archive_error=false
	241	input_list=""
	242	interpreted_config_file=""
[164]	243	job_catalog="~/job_queue"
[1]	244	job_on_file=""
	245	keep_data_from_previous_run=false
[183]	246	link_local_input=false
[149]	247	link_local_output=false
[1]	248	localhost_realname=$(hostname)
	249	local_compile=false
[260]	250	local_dvrserver_running=.FALSE.
[1]	251	locat=normal
	252	mainprog=""
	253	makefile=""
	254	mc=$0
	255	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	256	do
	257	mc=`echo $mc \| cut -f2- -d"/"`
	258	done
	259	module_files=""
	260	mrun_script_name=$mc
[82]	261	netcdf_inc=""
	262	netcdf_lib=""
[1]	263	netcdf_support=false
	264	node_usage=default
	265	numprocs=""
[206]	266	numprocs_atmos=0
	267	numprocs_ocean=0
[1]	268	OOPT=""
	269	openmp=false
	270	output_list=""
	271	package_list=""
	272	punkte="..........................................................."
	273	queue=none
	274	read_from_config=""
[5]	275	restart_run=false
[146]	276	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	277	if [[ $return_addres = 130.75.105.158 ]]
	278	then
	279	return_addres=172.20.25.41
	280	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
	281	fi
	282	return_password=""
	283	return_username=$LOGNAME
	284	remotecall=false
	285	remote_username=""
[102]	286	run_coupled_model=false
[1]	287	run_mode=""
	288	scirocco=false
[397]	289	store_on_archive_system=false
[1]	290	striche=" ----------------------------------------------------------------------------"
	291	silent=false
	292	source_list=""
	293	source_path=SOURCE
	294	tasks_per_node=""
	295	threads_per_task=1
	296	tmpcreate=false
	297	tmp_data_catalog=""
	298	transfer_problems=false
	299	usern=$LOGNAME
[377]	300	use_openmp=false
[1]	301	working_directory=`pwd`
	302	TOPT=""
	303	XOPT=""
	304	zeit=$( date \| cut -c 12-19 )
	305
	306	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	307	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	308
[66]	309	typeset -R30 calltime
[1]	310	typeset -L20 spalte1
	311	typeset -L40 spalte2
	312	typeset -L60 spalte3
	313	typeset -L35 string1=`date`
	314	typeset -L12 string2=$usern
	315	typeset -L12 string3=$localhost_realname
	316	typeset -L12 string4
	317	typeset -L12 string5
[201]	318	typeset -L30 version="MRUN 2.0 Rev$Rev: 416 $"
[1]	319
	320
	321
	322	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	323	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	324
	325	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	326	# EXPORTIERT WERDEN
	327	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	328	export group_number input_list memory numprocs output_list queue run_mode
[1]	329
	330
	331
	332	# FEHLERBEHANDLUNG
	333	# BEI EXIT:
[83]	334	trap 'rm -rf $working_directory/tmp_mrun
[69]	335	if [[ $locat != localhost ]]
[1]	336	then
[22]	337	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	338	# then
	339	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	340	#MRUN-calls on $localhost
	341	#
	342	#date and time user localhost remotehost termination mrun-command
	343	#--------------------------------------------------------------------------------------------------------------------
	344	#%STATEND%
	345	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	346	# fi
	347	#
	348	# # EINTRAG IN DIE STATISTIK-DATEI
	349	# string4=$host
	350	# string5=$locat
	351	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	352	# then
	353	# if [[ $do_batch = true ]]
	354	# then
	355	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	356	# else
	357	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	358	# fi
	359	# fi
[69]	360	echo " " > /dev/null
[1]	361	fi
	362
	363	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	364	then
	365
	366	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	367	(( i = 0 ))
	368	while (( i < iec ))
	369	do
	370	(( i = i + 1 ))
	371	printf "\n *** Execution of ERROR-command:\n"
	372	printf " >>> ${err_command[$i]}\n"
	373	eval ${err_command[$i]}
	374	done
	375	if [[ -n $interpreted_config_file ]] then
	376	rm -rf $interpreted_config_file
	377	fi
[71]	378	if [[ -n .mrun_environment ]] then
	379	rm -rf .mrun_environment
	380	fi
[1]	381	if [[ $tmpcreate = true ]]
	382	then
	383	printf "\n *** Contents of \"$TEMPDIR\":\n"
	384	ls -al; cd
	385	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	386	fi
[260]	387	if [[ "$dvrserver_id" != "" ]]
	388	then
	389	echo "+++ killing dvrserver_id=$dvrserver_id"
	390	kill $dvrserver_id
	391	fi
[1]	392	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	393	then
	394	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	395	fi
	396	printf "\n\n+++ MRUN killed \n\n"
	397	elif [[ $locat != control_c ]]
	398	then
	399	printf "\n\n --> all actions finished\n\n"
	400	printf " Bye, bye $usern !!\n\n"
	401	fi' exit
	402
	403
	404	# BEI TERMINAL-BREAK:
[83]	405	trap 'rm -rf $working_directory/tmp_mrun
[69]	406	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	407	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	408	then
	409	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	410	fi
[260]	411	if [[ "$dvrserver_id" != "" ]]
	412	then
	413	echo "+++ killing dvrserver_id=$dvrserver_id"
	414	kill $dvrserver_id
	415	fi
[1]	416	printf "\n+++ MRUN killed by \"^C\" \n\n"
	417	locat=control_c
	418	exit
	419	' 2
	420
	421
[22]	422	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	423	# BEEN SET
	424	if [[ "$PALM_BIN" = "" ]]
	425	then
	426	printf "\n +++ environment variable PALM_BIN has not been set"
	427	printf "\n please set it to the directory where the PALM scripts are located"
	428	locat=palm_bin; exit
	429	fi
[180]	430	export PATH=$PALM_BIN:$PATH
[22]	431
	432
[1]	433
	434	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	435	# FUER FOLGEJOBS BENOETIGT WIRD
[291]	436	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
[1]	437	do
	438	case $option in
	439	(a) afname=$OPTARG;;
[397]	440	(A) store_on_archive_system=true; mc="$mc -A";;
[1]	441	(b) do_batch=true; mc="$mc -b";;
	442	(B) delete_temporary_catalog=false; mc="$mc -B";;
	443	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	444	(C) restart_run=true; mc="$mc -C";;
[1]	445	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	446	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	447	(F) job_on_file="-D"; mc="$mc -F";;
[122]	448	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	449	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	450	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	451	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	452	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	453	(I) ignore_archive_error=true; mc="$mc -I";;
	454	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	455	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	456	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	457	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	458	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	459	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
	460	(O) use_openmp=true; mc="$mc -O";;
	461	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	462	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	463	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	464	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	465	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	466	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	467	(S) read_from_config=false; mc="$mc -S";;
	468	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
	469	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
	470	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	471	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	472	(v) silent=true; mc="$mc -v";;
	473	(x) do_trace=true;set -x; mc="$mc -x";;
	474	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	475	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	476	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[1]	477	(\?) printf "\n +++ unknown option $OPTARG \n"
	478	printf "\n --> type \"$0 ?\" for available options \n"
	479	locat=parameter;exit;;
	480	esac
	481	done
	482
	483
	484	# EVTL. POSITIONSPARAMETER EINLESEN
	485	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	486	shift OPTIND-1
	487
	488
	489	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	490	if [[ "$1" = "?" ]]
	491	then
	492	(printf "\n *** mrun can be called as follows:\n"
[291]	493	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
[1]	494	printf "\n Description of available options:\n"
	495	printf "\n Option Description Default-Value"
	496	printf "\n -a base name of input files equiv. -d"
[400]	497	printf "\n -A archiving when using file-attribute fl"
[1]	498	printf "\n -b batch-job on local machine ---"
	499	printf "\n -B do not delete temporary directory at end ---"
	500	printf "\n -c configuration file .mrun.config"
	501	printf "\n -d base name of files attached to program test"
	502	printf "\n -D preprocessor(cpp)-directives \"\" "
	503	printf "\n -F create remote job file only ---"
	504	printf "\n -h execution host $localhost_realname"
	505	printf "\n -i INPUT control list \"\" "
	506	printf "\n -I archiving errors of previous batch-jobs"
	507	printf "\n will be ignored"
	508	printf "\n -k keep data from previous run"
	509	printf "\n -K additional conditions for controling"
	510	printf "\n usage of conditional code and"
	511	printf "\n env-variables in configuration file \"\" "
	512	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	513	printf "\n -M Makefile name Makefile"
	514	printf "\n -n node usage (shared/not_shared) depending on -h"
	515	printf "\n -o OUTPUT control list \"\" "
	516	printf "\n -O use OpenMP ---"
	517	printf "\n -p software package list \"\" "
	518	printf "\n -q queue \"$queue\" "
	519	printf "\n -r run control list (combines -i -o) \"\" "
	520	printf "\n -s filenames of routines to be compiled \"\" "
	521	printf "\n must end with .f, .f90, .F, or .c !"
	522	printf "\n use \"..\" for more than one file and wildcards"
	523	printf "\n -s TEST compiles all files with w-permit"
	524	printf "\n -S config file interpreted by shellscript ---"
	525	printf "\n -t allowed cpu-time in seconds (batch) 0"
	526	printf "\n -T tasks per node depending on -h"
	527	printf "\n -u username on remote machine \"\" "
	528	printf "\n -v no prompt for confirmation ---"
	529	printf "\n -x tracing of mrun for debug purposes ---"
	530	printf "\n -X # of processors (on parallel machines) 1"
[291]	531	printf "\n -y add appendix \"_O\" to all local output"
	532	printf "\n files (ocean precursor runs followed by"
	533	printf "\n coupled atmosphere-ocean runs) ---"
[206]	534	printf "\n -Y run coupled model, \"#1 #2\" with"
	535	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[1]	536	printf "\n "
	537	printf "\n Possible values of positional parameter <modus>:"
	538	printf "\n \"?\" - this outline \n\n") \| more
	539	exit
	540	elif [[ "$1" != "" ]]
	541	then
	542	printf "\n +++ positional parameter $1 unknown \n"
	543	locat=parameter; exit
	544	fi
	545
	546
	547
	548	# KURZE STARTMELDUNG
	549	printf "\n*** $version "
	550	printf "\n will be executed. Please wait ..."
	551
	552
[82]	553
	554	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	555	if [[ ! -f $config_file ]]
	556	then
	557	printf "\n\n +++ configuration file: "
	558	printf "\n $config_file"
	559	printf "\n does not exist"
	560	locat=connect; exit
	561	fi
	562
	563
	564	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	565	line=""
	566	grep "%host_identifier" $config_file > tmp_mrun
	567	while read line
	568	do
[206]	569	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	570	then
	571	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	572	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	573	if [[ $localhost_realname = $HOSTNAME ]]
[82]	574	then
	575	localhost=$host_identifier
	576	break
	577	fi
	578	fi
	579	done < tmp_mrun
	580
	581	if [[ "$localhost" = "" ]]
	582	then
	583	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	584	printf "\n for local host \"$localhost_realname\"."
	585	printf "\n Please add line"
	586	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	587	printf "\n to the configuration file."
	588	locat=localhost; exit
	589	fi
	590
	591
	592	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	593	case $localhost_realname in
[397]	594	(r1\|r2\|h01\|b01) archive_system=tivoli;;
[82]	595	(cs*) archive_system=ut;;
	596	(fimm.bccs.uib.no) fimm=true;;
	597	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	598	(scirocco) scirocco=true;;
	599	esac
	600
	601
	602
[1]	603	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	604	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	605	[[ "$afname" = "" ]] && afname=$fname
	606
	607
	608	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	609	if [[ "$run_mode" != "" ]]
	610	then
	611	input_list="$input_list $run_mode"
	612	output_list="$output_list $run_mode"
	613	fi
	614
	615
	616	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	617	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	618	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	619	# STARTET)
	620	if [[ "$fromhost" = "" ]]
	621	then
	622	fromhost=$localhost
	623	fi
	624
	625
	626	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
	627	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
	628	then
	629	source_list=TEST
	630	local_compile=true
	631	host=$localhost
	632	fi
	633
	634
	635	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	636	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	637	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	638	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	639	if [[ -n $host && "$host" != $localhost ]]
	640	then
	641	do_batch=true
	642	do_remote=true
	643	case $host in
[367]	644	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lck) true;;
[1]	645	(*) printf "\n"
[83]	646	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	647	printf "\n is not available"
[1]	648	locat=nqs; (( iec = 0 )); exit;;
	649	esac
	650	else
	651	host=$localhost
	652	fi
	653
	654
	655	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	656	if [[ -n $additional_conditions ]]
	657	then
[69]	658	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	659	cond1=`echo $additional_conditions \| cut -d" " -f1`
	660	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	661	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	662	if [[ -n $dummy ]]
	663	then
	664	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	665	locat=options; exit
	666	fi
	667	fi
	668
	669
[206]	670	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	671	if [[ $run_coupled_model = true ]]
	672	then
	673
	674	if [[ -n $coupled_dist ]]
	675	then
	676
	677	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	678	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	679
	680	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	681	then
	682
	683	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	684	printf "\n PEs (total) : $numprocs"
	685	printf "\n PEs (atmosphere): $numprocs_atmos"
	686	printf "\n PEs (ocean) : $numprocs_ocean"
	687	locat=coupling; exit
	688
	689	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
	690	# THIS SHOULD BE REMOVED IN FUTURE
	691	elif (( $numprocs_ocean != $numprocs_atmos ))
	692	then
	693
	694	printf "\n +++ currently only 1:1 topologies are supported"
	695	printf "\n PEs (total) : $numprocs"
	696	printf "\n PEs (atmosphere): $numprocs_atmos"
	697	printf "\n PEs (ocean) : $numprocs_ocean"
	698	(( numprocs_atmos = $numprocs / 2 ))
	699	(( numprocs_ocean = $numprocs / 2 ))
	700	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
	701
	702	fi
	703
	704	else
	705
	706	(( numprocs_ocean = $numprocs / 2 ))
	707	(( numprocs_atmos = $numprocs / 2 ))
	708
	709	fi
	710	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	711
	712	# GET coupled_mode FROM THE CONFIG FILE
	713	line=""
	714	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	715	while read line
	716	do
	717	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
	718	then
	719	coupled_mode="mpi2"
	720	fi
	721	done < tmp_mrun
	722
	723	fi
	724
	725
[1]	726	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	727	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	728	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	729	then
	730	if [[ $ignore_archive_error = false ]]
	731	then
	732	printf "\n +++ data archiving of previous run failed"
	733	printf "\n see directory \~/job_queue on remote machine"
	734	locat=archive; exit
	735	else
	736	printf "\n +++ warning: data archiving in a previous run failed"
	737	printf "\n MRUN continues, trying to get backup copy"
	738	fi
	739	fi
	740
	741
	742
	743	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	744	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	745	if [[ "$read_from_config" = false ]]
	746	then
	747
	748	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	749	while read zeile
	750	do
	751	[[ $silent = false ]] && printf "."
	752
	753
	754	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	755	# ERSETZEN
	756	eval zeile=\"$zeile\"
	757
	758
	759	# INTERPRETATION DER ZEILE
[21]	760	if [[ "$(echo $zeile)" = "" ]]
[1]	761	then
[21]	762	# LEERZEILE, KEINE AKTION
	763	continue
[1]	764
[21]	765	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	766	then
	767
[1]	768	# ZEILE IST KOMMENTARZEILE
	769	true
	770
	771	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	772	then
	773
	774	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	775	zeile=$(echo $zeile \| cut -c2-)
[69]	776	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	777	var=`echo $zeile \| cut -d" " -f1`
	778	value=`echo $zeile \| cut -d" " -s -f2`
	779	for_host=`echo $zeile \| cut -d" " -s -f3`
	780	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	781	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	782
	783	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	784	then
	785
	786	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	787	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	788	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	789
	790
	791	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	792	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	793	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	794	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	795	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	796	# KONFIGURATIONSDATEI
	797	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	798	then
	799	eval $var=\$value
	800
	801	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	802	if [[ $do_trace = true ]]
	803	then
	804	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	805	fi
	806	fi
	807
	808	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	809	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	810	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	811	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	812	if [[ $var = host ]]
	813	then
	814	if [[ -n $host && "$host" != $localhost ]]
	815	then
	816	do_batch=true
	817	do_remote=true
	818	case $host in
[367]	819	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lck) true;;
[83]	820	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	821	printf "\n is not available"
[1]	822	locat=nqs; exit;;
	823	esac
	824	else
	825	host=$localhost
	826	fi
	827	fi
	828
	829	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	830	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	831	# DEN PROGRAMMEN BENOETIGT WERDEN
	832	export $var
	833	fi
	834
	835
	836
	837
	838	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	839	then
	840
	841	# ZEILE DEFINIERT ERROR-KOMMANDO
	842	(( iec = iec + 1 ))
	843	zeile=$(echo $zeile \| cut -c4-)
	844	err_command[$iec]="$zeile"
	845
	846	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	847	then
	848
	849	# ZEILE DEFINIERT INPUT-KOMMANDO
	850	(( iic = iic + 1 ))
	851	zeile=$(echo $zeile \| cut -c4-)
	852	in_command[$iic]="$zeile"
	853
	854	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	855	then
	856
	857	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	858	(( ioc = ioc + 1 ))
	859	zeile=$(echo $zeile \| cut -c4-)
	860	out_command[$ioc]="$zeile"
	861
	862	else
	863
	864	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	865	# s2a: in/out - Feld
	866	# s2b: loc - Feld (optional)
	867	# s2c: tr/ar - Feld (optional)
[69]	868	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	869	s1=`echo $zeile \| cut -d" " -f1`
	870	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	871	s2a=$(echo $s2 \| cut -d":" -f1)
	872	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	873	then
	874	s2b=""
	875	s2c=""
	876	else
[69]	877	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	878	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	879	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	880	fi
[69]	881	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	882	s3=`echo $zeile \| cut -d" " -f3`
	883	s4=`echo $zeile \| cut -d" " -s -f4`
	884	s5=`echo $zeile \| cut -d" " -s -f5`
	885	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	886
	887
	888	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	889	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	890	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	891	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	892	# HANDEN SEIN MUSS (D.H. s2b = loc)
	893	IFSALT="$IFS"; IFS="$IFS:"
	894	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	895	then
	896	found=false
	897	for actual in $input_list
	898	do
	899	for formal in $s3
	900	do
	901	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	902	done
	903	done
	904	if [[ $found = true ]]
	905	then
	906	(( iin = iin + 1 ))
	907	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	908	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	909	extin[$iin]=$s6
	910	fi
	911	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	912	then
	913	found=false
	914	for actual in $output_list
	915	do
	916	for formal in $s3
	917	do
	918	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	919	done
	920	done
	921	if [[ $found = true ]]
	922	then
	923	(( iout = iout + 1 ))
	924	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	925	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	926	fi
	927	elif [[ "$s2a" != in && "$s2a" != out ]]
	928	then
	929	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	930	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	931	locat=connect; exit
	932	fi
	933	IFS="$IFSALT"
	934	fi
	935	done < $config_file
	936
	937	else
	938
	939
	940	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	941	[[ $silent = false ]] && printf "..."
	942	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	943	export interpreted_config_file=.icf.$RANDOM
	944
	945
[69]	946
	947	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	948	# VERFUEGUNG STELLEN
	949	cat > .mrun_environment << %%END%%
	950	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	951	config_file = '$config_file', do_remote = '$do_remote',
	952	do_trace = '$do_trace', host = '$host',
	953	input_list = '$input_list', icf = '$interpreted_config_file',
	954	localhost = '$localhost', output_list = '$output_list' /
	955
	956	%%END%%
	957
	958	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	959	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	960	mrun_memory=$memory
[127]	961	mrun_group_number=$group_number
[69]	962	mrun_cpumax=$cpumax
	963	mrun_numprocs=$numprocs
	964
[251]	965	if [[ $localhost_realname = "sx-fep" ]]
[66]	966	then
[251]	967	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	968	else
	969	interpret_config.x
	970	fi
[71]	971	rm .mrun_environment
[1]	972
[71]	973
[1]	974	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	975	chmod u+x $interpreted_config_file
	976	export PATH=$PATH:.
	977	. $interpreted_config_file
[71]	978	rm $interpreted_config_file
[1]	979
[71]	980
[69]	981	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[71]	982	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	983	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[71]	984	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	985	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
[69]	986
[1]	987	fi
	988
	989
	990	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	991	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	992	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	993	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	994	if [[ "$SOURCES_COMPLETE" = "" ]]
	995	then
	996
	997	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	998	# VEREINBART WURDE
	999	source_path=""
	1000	line=""
	1001	grep "%source_path" $config_file > tmp_mrun
	1002	while read line
	1003	do
	1004	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1005	then
	1006	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	1007	then
	1008	global_source_path=`echo $line \| cut -d" " -f2`
	1009	fi
	1010	fi
	1011	done < tmp_mrun
	1012
	1013	line=""
	1014	found=false
	1015	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	1016	while read line
	1017	do
	1018	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1019	then
	1020	if [[ $found = true ]]
	1021	then
	1022	printf "\n\n +++ more than one source path found in configuration file"
	1023	printf "\n for local host \"$localhost\" "
	1024	locat=source_path; exit
	1025	fi
	1026	source_path=`echo $line \| cut -d" " -f2`
	1027	found=true
	1028	fi
	1029	done < tmp_mrun
	1030	rm tmp_mrun
	1031
	1032	if [[ "$source_path" = "" ]]
	1033	then
	1034	if [[ "$global_source_path" != "" ]]
	1035	then
	1036	source_path=$global_source_path
	1037	else
	1038	printf "\n\n +++ no source path found in configuration file"
	1039	printf "\n for local host \"$localhost\" "
	1040	locat=source_path; exit
	1041	fi
	1042	fi
	1043	eval source_path=$source_path
	1044
	1045	if [[ ! -d $source_path ]]
	1046	then
	1047	printf "\n\n +++ source path \"$source_path\" on local host"
	1048	printf "\n \"$localhost\" does not exist"
	1049	locat=source_path; exit
	1050	fi
	1051
	1052	fi
	1053
	1054
[78]	1055	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	1056	# DURCH OPTION -G MITGETEILT)
	1057	if [[ "$global_revision" = "" ]]
	1058	then
	1059	global_revision=`svnversion $source_path 2>/dev/null`
	1060	global_revision="Rev: $global_revision"
	1061	fi
[1]	1062
[78]	1063
[1]	1064	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1065	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1066	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1067	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1068	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1069	if [[ -n $host && "$host" != $localhost ]]
	1070	then
	1071	do_batch=true
	1072	do_remote=true
	1073	case $host in
[367]	1074	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lck) true;;
[1]	1075	(*) printf "\n"
[83]	1076	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1077	printf "\n is not available"
[1]	1078	locat=nqs; (( iec = 0 )); exit;;
	1079	esac
	1080	else
	1081	host=$localhost
	1082	fi
	1083
	1084
	1085	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1086	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1087	then
	1088
	1089	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1090	if [[ ! -n $numprocs ]]
	1091	then
	1092	printf "\n"
	1093	printf "\n +++ option \"-K parallel\" requires additional specification"
	1094	printf "\n of the number of processors to be used by"
	1095	printf "\n mrun-option \"-X\" or by environment-variable"
	1096	printf "\n \"numprocs\" in the configuration file"
	1097	locat=numprocs; (( iec = 0 )); exit
	1098	fi
	1099
	1100	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1101	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1102	# GESAMTPROZESSORANZAHL IST
[251]	1103	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
[1]	1104	then
	1105	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
	1106	(( ival = $tasks_per_node ))
	1107	(( pes = numprocs ))
	1108	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1109	# then
	1110	# (( pes = pes - 1 ))
	1111	# fi
	1112	(( ii = pes / ival ))
	1113	if (( pes - ii * ival > 0 ))
	1114	then
	1115	printf "\n"
	1116	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1117	printf "\n divisor of the total number of processors (option \"-X\")"
	1118	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1119	locat=tasks_per_node; (( iec = 0 )); exit
	1120	fi
	1121	fi
	1122
	1123	# IBMY HAT NUR EINEN KNOTEN
	1124	if [[ $host = ibmy ]]
	1125	then
	1126	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1127	then
	1128	printf "\n"
	1129	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1130	printf "\n total number of processors (option \"-X\")"
	1131	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1132	locat=tasks_per_node; (( iec = 0 )); exit
	1133	fi
	1134	fi
	1135
	1136	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
	1137	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
	1138	if [[ $use_openmp = true ]]
	1139	then
	1140	threads_per_task=$tasks_per_node
	1141	tasks_per_node=1
	1142	fi
[377]	1143
	1144	# SETTINGS FOR SUBJOB-COMMAND
	1145	if [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1146	then
	1147	(( tp1 = tasks_per_node * threads_per_task ))
	1148	TOPT="-T $tp1"
	1149	else
	1150	TOPT="-T $tasks_per_node"
	1151	fi
[1]	1152	OOPT="-O $threads_per_task"
	1153
	1154	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1155	if [[ "$tasks_per_node" != "" ]]
	1156	then
	1157	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1158	fi
	1159
	1160	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1161	# SETZEN
	1162	if [[ $node_usage = default ]]
	1163	then
	1164	if [[ $host = ibms ]]
	1165	then
	1166	node_usage=shared
[118]	1167	elif [[ $host = lctit ]]
	1168	then
[265]	1169	node_usage=RAM64GB
[181]	1170	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1171	then
	1172	node_usage=singlejob
[1]	1173	else
	1174	node_usage=not_shared
	1175	fi
	1176	fi
[181]	1177
[265]	1178	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
[1]	1179	then
	1180	printf "\n"
	1181	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1182	printf "\n \"shared\" or \"not_shared\""
	1183	locat=tasks_per_node; (( iec = 0 )); exit
	1184	fi
	1185
	1186	fi
	1187
	1188	# PRUEFEN, OB HOSTFILE EXISTIERT
	1189	if [[ -n $hostfile ]]
	1190	then
	1191	if [[ ! -f $hostfile ]]
	1192	then
	1193	printf "\n"
	1194	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1195	locat=hostfile; exit
	1196	fi
	1197	fi
	1198
	1199	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1200	if [[ $host = ibmy && $do_remote = false ]]
	1201	then
	1202	if [[ ! -f $HOME/.rhosts ]]
	1203	then
	1204	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1205	printf "\n\n *** file:"
	1206	printf "\n $HOME/.rhosts"
	1207	printf "\n was created\n"
	1208	fi
	1209	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1210	then
	1211	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1212	printf "\n\n *** file:"
	1213	printf "\n $HOME/.rhosts"
	1214	printf "\n was extended by the name of the current host\n"
	1215	fi
	1216	fi
	1217
	1218
	1219
	1220	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1221	if [[ $queue = none ]]
	1222	then
	1223	case $host in
	1224	(ibmb) if [[ $node_usage = shared ]]
	1225	then
	1226	queue=cshare
	1227	else
	1228	queue=csolo
	1229	fi;;
[312]	1230	(ibmh) queue=no_class;;
[1]	1231	(ibmy) queue=parallel;;
[191]	1232	(lcsgib) queue=bigq;;
	1233	(lcsgih) queue=bigq;;
[265]	1234	(lctit) queue=RAM64GB;;
[1]	1235	(nech) queue=none;;
[253]	1236	(necriam) queue=SP;;
[1]	1237	(unics) queue=unics;;
	1238	esac
	1239	fi
	1240
	1241
	1242	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1243	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1244	# ERMITTELN
	1245	(( i = 0 ))
	1246	while (( i < iin ))
	1247	do
	1248	(( i = i + 1 ))
	1249	(( maxcycle = 0 ))
	1250
	1251	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1252	if [[ "${actionin[$i]}" = di ]]
	1253	then
	1254	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1255	# REM-MASCHINE AUSWERTEN
	1256	eval filename=${pathin[$i]}/${endin[$i]}
	1257	else
	1258	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1259	# REM-MASCHINE AUSWERTEN
	1260	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1261	fi
	1262
	1263	# PRUEFEN AUF VORHANDENSEIN
	1264	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1265	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1266	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1267	then
	1268	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1269	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1270	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1271	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1272	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1273	if [[ "${transin[$i]}" != "locopt" ]]
	1274	then
	1275	printf "\n\n +++ INPUT-file: "
	1276	if [[ "${extin[$i]}" = "" ]]
	1277	then
	1278	printf "\n $filename"
	1279	else
	1280	printf "\n $filename.${extin[$i]}"
	1281	fi
	1282	printf "\n does not exist\n"
	1283	locat=input; exit
	1284	else
	1285	transin[$i]="unavailable"
	1286	fi
	1287	else
	1288
	1289	# ZYKLUSNUMMER FESTSTELLEN
	1290	ls -1 -d $filename > filelist 2>/dev/null
	1291	ls -1 -d $filename.* >> filelist 2>/dev/null
	1292	while read zeile
	1293	do
	1294	cycle=$(print $zeile \| cut -f2 -d".")
	1295	if [[ "$cycle" = "$zeile" ]]
	1296	then
	1297	(( icycle = 0 ))
	1298	elif [[ "$cycle" = "${extin[$i]}" ]]
	1299	then
	1300	(( icycle = 0 ))
	1301	else
	1302	(( icycle = $cycle ))
	1303	fi
	1304	if (( icycle > maxcycle ))
	1305	then
	1306	(( maxcycle = icycle ))
	1307	file_to_be_used=$zeile
	1308	fi
	1309	done <filelist
	1310	rm filelist
	1311
	1312	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1313	if (( maxcycle > 0 ))
	1314	then
	1315	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1316	then
	1317	filename=${filename}.$maxcycle.${extin[$i]}
	1318	else
	1319	filename=${filename}.$maxcycle
	1320	fi
	1321	else
	1322	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1323	then
	1324	filename=${filename}.${extin[$i]}
	1325	fi
	1326	fi
	1327
	1328	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1329	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1330	absnamein[$i]=$filename
	1331	if (( maxcycle > 0 ))
	1332	then
	1333	if [[ "${actionin[$i]}" = di ]]
	1334	then
	1335	frelin[$i]=${endin[$i]}.$maxcycle
	1336	else
	1337	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1338	fi
	1339	else
	1340	if [[ "${actionin[$i]}" = di ]]
	1341	then
	1342	frelin[$i]=${endin[$i]}
	1343	else
	1344	frelin[$i]=${afname}${endin[$i]}
	1345	fi
	1346	fi
	1347
	1348	fi
	1349	done
	1350
	1351
	1352	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1353	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1354	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1355	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1356	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1357	(( i = 0 ))
	1358	while (( i < iout ))
	1359	do
	1360	(( i = i + 1 ))
	1361	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1362	then
[260]	1363	if [[ "${actionout[$i]}" = tr ]]
[1]	1364	then
	1365	actionout[$i]=""
[260]	1366	elif [[ "${actionout[$i]}" = trpe ]]
	1367	then
	1368	actionout[$i]=pe
[1]	1369	elif [[ "${actionout[$i]}" = tra ]]
	1370	then
	1371	actionout[$i]=a
	1372	fi
	1373	(( maxcycle = 0 ))
	1374	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1375	eval catalogname=${pathout[$i]}
	1376	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1377	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1378	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1379	then
	1380
	1381	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1382	if cat /dev/null > $filename
	1383	then
	1384	rm $filename
	1385	else
	1386
	1387	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1388	if [[ ! -d $catalogname ]]
	1389	then
	1390	if mkdir -p $catalogname
	1391	then
	1392	printf "\n\n *** directory:"
	1393	printf "\n $catalogname"
	1394	printf "\n was created\n"
	1395	else
	1396	printf "\n\n +++ OUTPUT-file:"
	1397	printf "\n $filename"
	1398	printf "\n cannot be created, because directory does not exist"
	1399	printf "\n and cannot be created either"
	1400	printf "\n"
	1401	locat=output ; exit
	1402	fi 2>/dev/null
	1403	else
	1404	printf "\n\n +++ OUTPUT-file:"
	1405	printf "\n $filename"
	1406	printf "\n cannot be created, although directory exists"
	1407	printf "\n"
	1408	locat=output ; exit
	1409	fi
	1410	fi 2>/dev/null
	1411	else
	1412
	1413	# ZYKLUSNUMMER FESTSTELLEN
	1414	ls -1 -d $filename > filelist 2>/dev/null
	1415	ls -1 -d $filename.* >> filelist 2>/dev/null
	1416	while read zeile
	1417	do
	1418	cycle=$(print $zeile \| cut -f2 -d".")
	1419	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1420	then
	1421	(( icycle = 1 ))
	1422	else
	1423	(( icycle = $cycle + 1 ))
	1424	fi
	1425	if (( icycle > maxcycle ))
	1426	then
	1427	(( maxcycle = icycle ))
	1428	fi
	1429	done <filelist
	1430	rm filelist
	1431	fi
	1432
	1433	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1434	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1435	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1436	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1437	if [[ "${actionout[$i]}" != a ]]
	1438	then
	1439	if (( maxcycle > 0 ))
	1440	then
	1441	filename=${filename}.$maxcycle
	1442	if cat /dev/null > $filename
	1443	then
	1444	rm $filename
	1445	else
	1446	printf "\n +++ OUTPUT-file:"
	1447	printf "\n $filename"
	1448	printf "\n cannot be created"
	1449	locat=output ; exit
	1450	fi
	1451	fi
	1452	else
	1453	(( maxcycle = maxcycle - 1 ))
	1454	if (( maxcycle > 0 ))
	1455	then
	1456	filename=${filename}.$maxcycle
	1457	fi
	1458	fi
	1459
	1460	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1461	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1462	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1463	pathout[$i]=$filename
	1464	if (( maxcycle > 0 ))
	1465	then
	1466	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1467	else
	1468	frelout[$i]=${fname}${endout[$i]}
	1469	fi
	1470
	1471	fi
	1472	done
	1473
	1474
[260]	1475	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1476	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1477	then
[260]	1478	if [[ "$dvr_inc" = "" ]]
[83]	1479	then
[260]	1480	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1481	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1482	locat=dvr; exit
[83]	1483	fi
[260]	1484	if [[ "$dvr_lib" = "" ]]
[83]	1485	then
[260]	1486	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1487	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1488	locat=dvr; exit
[83]	1489	fi
	1490	fi
	1491
	1492
[1]	1493	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1494	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1495	# UEBERSETZT ZU WERDEN)
	1496	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1497	then
	1498	printf "\n +++ neither main program nor executable defined"
	1499	locat=source; exit
	1500	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1501	then
	1502	printf "\n +++ main program as well as executable defined"
	1503	locat=source; exit
	1504	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1505	then
	1506	do_compile=false
	1507	fi
	1508
	1509
[191]	1510	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1511	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1512	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1513	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1514	then
	1515	rm -rf SOURCES_FOR_RUN_$fname
	1516	mkdir SOURCES_FOR_RUN_$fname
	1517	fi
	1518
	1519
[1]	1520	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1521	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1522	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1523	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1524	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1525	then
	1526
[5]	1527	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
	1528	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
[1]	1529
	1530
	1531	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
	1532	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
	1533	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
	1534	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
	1535	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
	1536	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
	1537	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
	1538	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
	1539	# GESAMMELT
[5]	1540	if [[ "$source_list" = WRITE_PERMIT ]]
[1]	1541	then
	1542
	1543	source_list=""
	1544	cd $source_path
	1545
	1546
	1547	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
	1548	Names=$(ls -1 *.f90 2>&1)
	1549	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
	1550	Names=$(ls -1 *.F90 2>&1)
	1551	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
	1552	Names=$(ls -1 *.F 2>&1)
	1553	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
	1554	Names=$(ls -1 *.f 2>&1)
	1555	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
	1556	Names=$(ls -1 *.c 2>&1)
	1557	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
	1558
	1559
	1560	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
	1561	for dateiname in $Filenames
	1562	do
	1563	if [[ -w $dateiname ]]
	1564	then
	1565	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
	1566	then
	1567	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1568	source_list=$source_list"$dateiname "
	1569	fi
	1570	fi
	1571	done
	1572
	1573	cd - > /dev/null
	1574
	1575
[5]	1576	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
	1577	then
	1578
	1579	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1580	source_list=""
	1581	cd $source_path
	1582
	1583
	1584	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1585	if [[ ! -d .svn ]]
	1586	then
	1587	printf "\n\n +++ source directory"
	1588	printf "\n \"$source_path\" "
	1589	printf "\n is not under control of \"subversion\"."
[306]	1590	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1591	fi
	1592
	1593
	1594	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1595	Filenames=""
[69]	1596	svn status > tmp_mrun
	1597	while read line
[5]	1598	do
	1599	firstc=`echo $line \| cut -c1`
	1600	if [[ $firstc = M \|\| $firstc = "?" ]]
	1601	then
	1602	Name=`echo "$line" \| cut -c8-`
	1603	extension=`echo $Name \| cut -d. -f2`
	1604	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1605	then
	1606	Filenames="$Filenames "$Name
	1607	fi
	1608	fi
[69]	1609	done < tmp_mrun
[5]	1610
	1611
	1612	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1613	for dateiname in $Filenames
	1614	do
	1615	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1616	source_list=$source_list"$dateiname "
	1617	done
	1618
	1619	cd - > /dev/null
	1620
	1621
[1]	1622	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1623	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1624	# VORHANDEN
[5]	1625	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1626	then
	1627
	1628	cd $source_path
	1629
	1630	for filename in $source_list
	1631	do
	1632
	1633	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1634	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1635	then
	1636	printf "\n +++ source code file: $filename"
	1637	printf "\n must not contain (\"/\") "
	1638	locat=source; exit
	1639	fi
	1640
	1641	if [[ ! -f $filename ]]
	1642	then
	1643	printf "\n +++ source code file: $filename"
	1644	printf "\n does not exist"
	1645	locat=source; exit
	1646	else
	1647	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1648	fi
	1649
	1650	done
	1651
	1652	cd - > /dev/null
	1653
	1654	fi
	1655
	1656
	1657	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1658	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1659	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1660	if [[ $restart_run != true ]]
[1]	1661	then
	1662
	1663	if [[ ! -f "$source_path/$mainprog" ]]
	1664	then
	1665	printf "\n\n +++ main program: $mainprog"
	1666	printf "\n does not exist in source directory"
	1667	printf "\n \"$source_path\"\n"
	1668	locat=source; exit
	1669	else
	1670	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1671	then
	1672	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1673	source_list=${mainprog}" $source_list"
	1674	fi
	1675	fi
	1676	fi
	1677
	1678
[211]	1679	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1680	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1681	if [[ "$restart_run" != true ]]
	1682	then
	1683	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1684	if [[ ! -f $makefile ]]
	1685	then
	1686	printf "\n +++ file \"$makefile\" does not exist"
	1687	locat=make; exit
	1688	else
	1689	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1690	fi
	1691	fi
	1692
	1693
[1]	1694	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1695	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1696	then
	1697
	1698	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1699	if [[ ! -d $add_source_path ]]
	1700	then
	1701	printf "\n\n +++ WARNING: additional source code directory"
	1702	printf "\n \"$add_source_path\" "
	1703	printf "\n does not exist or is not a directory."
	1704	printf "\n No source code will be used from this directory!\n"
	1705	add_source_path=""
	1706	sleep 3
	1707	else
	1708
	1709	cd $add_source_path
[211]	1710	found=false
[1]	1711
	1712	Names=$(ls -1 *.f90 2>&1)
	1713	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1714	Names=$(ls -1 *.F90 2>&1)
	1715	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1716	Names=$(ls -1 *.F 2>&1)
	1717	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1718	Names=$(ls -1 *.f 2>&1)
	1719	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1720	Names=$(ls -1 *.c 2>&1)
	1721	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1722
	1723	cd - > /dev/null
	1724	cd SOURCES_FOR_RUN_$fname
	1725
[211]	1726	# COPY MAKEFILE IF EXISTING
	1727	if [[ -f $add_source_path/Makefile ]]
	1728	then
	1729	printf "\n\n *** user Makefile from directory"
	1730	printf "\n \"$add_source_path\" is used \n"
	1731	sleep 1
	1732	cp $add_source_path/Makefile .
	1733	fi
	1734
[1]	1735	for dateiname in $AddFilenames
	1736	do
	1737	if [[ -f $dateiname ]]
	1738	then
	1739	printf "\n +++ source code file \"$dateiname\" found in additional"
	1740	printf "\n source code directory \"$add_source_path\" "
[211]	1741	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1742	printf "\n from directory \"$source_path\"."
[1]	1743	locat=source; exit
	1744	fi
	1745
	1746	cp $add_source_path/$dateiname .
	1747	source_list="$source_list $dateiname"
	1748
[211]	1749	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1750	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1751	then
	1752	printf "\n\n +++ user file \"$dateiname\" "
	1753	printf "\n is not listed in Makefile \n"
	1754	locat=source; exit
	1755	else
	1756
[1]	1757	# Default User-Interface von der Liste entfernen, falls Datei
	1758	# ein User-Interface enthaelt
[211]	1759	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1760	# then
	1761	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1762	# then
	1763	# rm -rf user_interface.f90
	1764	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1765	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1766	# printf "\n since a user-interface is found in file"
	1767	# printf "\n \"$add_source_path/$dateiname\" \n"
	1768	# sleep 3
	1769	# else
	1770	if [[ $found = false ]]
[1]	1771	then
[211]	1772	found=true
	1773	printf "\n\n *** following user file(s) added to the"
	1774	printf " files to be translated:\n "
[1]	1775	fi
[211]	1776	printf "$dateiname "
	1777	sleep 0.5
[1]	1778	fi
	1779	done
[211]	1780	[[ $found = true ]] && printf "\n"
[1]	1781	cd - > /dev/null
	1782	fi
	1783	fi
	1784
	1785
	1786	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1787	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1788	if [[ $restart_run != true && -n $package_list ]]
[1]	1789	then
	1790
	1791	cd $source_path
	1792
	1793	for package in $package_list
	1794	do
	1795
	1796	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1797
	1798	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1799	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1800	# LIEFERT
	1801	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1802
	1803
	1804	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1805	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1806	for source_list_name in $package_source_list
	1807	do
	1808	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1809	then
	1810
	1811	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1812	ending=`echo $source_list_name \| cut -f2 -d.`
	1813	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1814	then
	1815	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1816	source_list="$source_list $source_list_name"
	1817	fi
	1818	fi
	1819	done
	1820	done
	1821
	1822	cd - > /dev/null
	1823	fi
	1824
	1825
	1826	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1827	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1828	# if [[ "$restart_run" != true ]]
	1829	# then
	1830	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1831	# if [[ ! -f $makefile ]]
	1832	# then
	1833	# printf "\n +++ file \"$makefile\" does not exist"
	1834	# locat=make; exit
	1835	# else
	1836	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1837	# fi
	1838	# fi
[1]	1839
	1840	fi # do_compile=true
	1841
	1842
	1843	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1844	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1845	if [[ $do_compile = true ]]
	1846	then
	1847
	1848	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1849	# ZUSAMMENSETZEN
[83]	1850	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1851	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1852	then
[82]	1853	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1854	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1855	then
[82]	1856	cpp_options="$cpp_options -D__nec"
	1857	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1858	then
	1859	cpp_options="$cpp_options -D__lc"
[1]	1860	else
[82]	1861	cpp_options="$cpp_options -D__$localhost"
[1]	1862	fi
[83]	1863
	1864	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1865	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1866	then
[82]	1867	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1868	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1869	else
[82]	1870	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1871	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1872	fi
[83]	1873
	1874	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1875	if [[ -n $package_list ]]
	1876	then
	1877	for package in $package_list
	1878	do
	1879	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1880	then
	1881	if [[ $package != "dvrp_graphics+1PE" ]]
	1882	then
[82]	1883	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1884	else
[82]	1885	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1886	export use_seperate_pe_for_dvrp_output=true
	1887	fi
	1888	else
	1889	if [[ $package != "dvrp_graphics+1PE" ]]
	1890	then
[82]	1891	cpp_options="$cpp_options -D__$package"
[1]	1892	else
[82]	1893	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1894	export use_seperate_pe_for_dvrp_output=true
	1895	fi
	1896	fi
	1897	done
	1898	fi
[83]	1899
	1900	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1901	if [[ -n $cpp_opts ]]
	1902	then
	1903	for popts in $cpp_opts
	1904	do
[82]	1905	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1906	then
	1907	cpp_options="${cpp_options},-D__$popts=__$popts"
	1908	else
	1909	cpp_options="$cpp_options -D__$popts"
	1910	fi
[1]	1911	done
	1912	fi
	1913
	1914	else
	1915
	1916
	1917	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1918	if [[ $do_remote = false ]]
	1919	then
	1920	if [[ ! -f $executable ]]
	1921	then
	1922	printf "\n +++ executable file: $executable"
	1923	printf "\n does not exist"
	1924	locat=executable; exit
	1925	fi
	1926	fi
	1927	fi
	1928
	1929
	1930	# JOBMODUS FESTSTELLEN
	1931	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
	1932	then
	1933	jobmo=BATCH
	1934	else
	1935	jobmo=INTERACTIVE
	1936	fi
	1937
	1938
	1939	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1940	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1941	if [[ "$compiler_name" = "" ]]
	1942	then
[82]	1943
[220]	1944	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1945	locat=compiler_name; exit
	1946
[1]	1947	fi
	1948
	1949
[251]	1950	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	1951	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	1952
	1953
	1954
	1955	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	1956	kennung=$RANDOM
	1957	if [[ "$tmp_user_catalog" = "" ]]
	1958	then
[312]	1959	if [[ $localhost = ibmh ]]
[1]	1960	then
[312]	1961	tmp_user_catalog=$SCRATCH
[1]	1962	elif [[ $localhost = nech ]]
	1963	then
	1964	tmp_user_catalog=$WRKSHR
	1965	else
	1966	tmp_user_catalog=/tmp
	1967	fi
	1968	fi
	1969	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	1970
	1971
	1972	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	1973	# BESTIMMEN
	1974	if [[ "$tmp_data_catalog" = "" ]]
	1975	then
[312]	1976	if [[ $localhost = ibmb ]]
[1]	1977	then
	1978	tmp_data_catalog=$WORK/mrun_restart_data
	1979	elif [[ $localhost = nech ]]
	1980	then
	1981	tmp_data_catalog=$WRKSHR/mrun_restart_data
	1982	else
	1983	tmp_data_catalog=/tmp/mrun_restart_data
	1984	fi
	1985	fi
	1986
	1987
	1988	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	1989	# ERSETZEN
	1990	if [[ $do_remote = false && $do_compile = true ]]
	1991	then
	1992	eval fopts=\"$fopts\"
	1993	eval lopts=\"$lopts\"
	1994	fi
	1995
	1996
	1997
	1998	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	1999	fopts="$fopts $netcdf_inc $dvr_inc"
	2000	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	2001	ROPTS="$ropts"
[367]	2002	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lck ) && -n $numprocs ]]
[1]	2003	then
	2004	XOPT="-X $numprocs"
	2005	fi
	2006
	2007
	2008
	2009	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	2010	# GRAMM BENOETIGT
	2011	done=false
	2012	while [[ $done = false ]]
	2013	do
	2014	cputime=$cpumax
	2015	if (( $cputime == 0 ))
	2016	then
[246]	2017	if [[ $do_batch = true ]]
	2018	then
	2019	printf "\n +++ cpu-time is undefined"
	2020	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	2021	printf "\n >>> "
	2022	read cputime 1>/dev/null 2>&1
	2023	else
	2024	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	2025	fi
[1]	2026	else
	2027	done=true
	2028	fi
	2029	cpumax=$cputime
	2030	done
	2031
	2032	(( minuten = cputime / 60 ))
	2033	(( sekunden = cputime - minuten * 60 ))
	2034
	2035
	2036	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	2037	if [[ $do_batch = true ]]
	2038	then
	2039	done=false
	2040	while [[ $done = false ]]
	2041	do
	2042	if (( memory == 0 ))
	2043	then
	2044	printf "\n +++ memory demand is undefined"
	2045	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	2046	printf "\n >>> "
	2047	read memory 1>/dev/null 2>&1
	2048	else
	2049	done=true
	2050	fi
	2051	done
	2052	fi
	2053
	2054
	2055	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	2056	if [[ $do_remote = true && -z $remote_username ]]
	2057	then
	2058	while [[ -z $remote_username ]]
	2059	do
	2060	printf "\n +++ username on remote host \"$host\" is undefined"
	2061	printf "\n >>> Please type username:"
	2062	printf "\n >>> "
	2063	read remote_username
	2064	done
	2065	mc="$mc -u$remote_username"
	2066	fi
	2067
[221]	2068
	2069	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2070	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2071	then
	2072	[[ "$mpilib" = "" ]] && export mpilib=mpt
	2073	fi
	2074
	2075
	2076
[1]	2077	###########################################################################
	2078	# HEADER-AUSGABE
	2079	###########################################################################
	2080
	2081
	2082	calltime=$(date)
	2083	printf "\n"
	2084	# [[ $silent = false ]] && clear
	2085	printf "#--------------------------------------------------------------# \n"
	2086	printf "\| $version$calltime \| \n"
	2087	printf "\| \| \n"
	2088	spalte1="called on:"; spalte2=$localhost_realname
	2089	printf "\| $spalte1$spalte2 \| \n"
	2090	if [[ $local_compile = false ]]
	2091	then
	2092	if [[ $do_remote = true ]]
	2093	then
	2094	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2095	else
	2096	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2097	fi
	2098	else
	2099	spalte1="compiling test only!"; spalte2=""
	2100	fi
	2101	printf "\| $spalte1$spalte2 \| \n"
	2102	if [[ -n $numprocs ]]
	2103	then
	2104	spalte1="number of PEs:"; spalte2=$numprocs
	2105	printf "\| $spalte1$spalte2 \| \n"
	2106	fi
	2107	if [[ -n $tasks_per_node ]]
	2108	then
	2109	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	2110	printf "\| $spalte1$spalte2 \| \n"
	2111	fi
	2112	if [[ $threads_per_task != 1 ]]
	2113	then
	2114	spalte1="threads per task:"; spalte2="$threads_per_task"
	2115	printf "\| $spalte1$spalte2 \| \n"
	2116	fi
	2117	printf "\| \| \n"
	2118	if [[ $do_compile = true ]]
	2119	then
[82]	2120	spalte1=cpp-directives:; spalte2=$cpp_options
[1]	2121	printf "\| $spalte1$spalte2 \| \n"
[82]	2122	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2123	while [[ "$zeile" != "" ]]
	2124	do
	2125	spalte1=""
	2126	spalte2=$zeile
	2127	printf "\| $spalte1$spalte2 \| \n"
	2128	zeile=$(echo "$zeile" \| cut -c41-)
	2129	done
	2130
[82]	2131	spalte1=compiler-options:; spalte2="$fopts"
[1]	2132	printf "\| $spalte1$spalte2 \| \n"
[82]	2133	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2134	while [[ "$zeile" != "" ]]
	2135	do
	2136	spalte1=""
	2137	spalte2=$zeile
	2138	printf "\| $spalte1$spalte2 \| \n"
	2139	zeile=$(echo "$zeile" \| cut -c41-)
	2140	done
	2141
[82]	2142	spalte1=linker-options:; spalte2=$lopts
[1]	2143	printf "\| $spalte1$spalte2 \| \n"
[82]	2144	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2145	while [[ "$zeile" != "" ]]
	2146	do
	2147	spalte1=""
	2148	spalte2=$zeile
	2149	printf "\| $spalte1$spalte2 \| \n"
	2150	zeile=$(echo "$zeile" \| cut -c41-)
	2151	done
	2152
	2153	spalte1="main program":; spalte2=$mainprog
	2154	printf "\| $spalte1$spalte2 \| \n"
	2155	else
	2156	spalte1=executable:; spalte2=$executable
	2157	printf "\| $spalte1$spalte2 \| \n"
	2158	fi
	2159	printf "\| \| \n"
	2160	spalte1="base name of files":; spalte2=$fname
	2161	printf "\| $spalte1$spalte2 \| \n"
	2162	if [[ $fname != $afname ]]
	2163	then
	2164	spalte1="base name of input files":; spalte2=$afname
	2165	printf "\| $spalte1$spalte2 \| \n"
	2166	fi
	2167	spalte1="INPUT control list":; spalte2=$input_list
	2168	printf "\| $spalte1$spalte2 \| \n"
	2169	spalte1="OUTPUT control list":; spalte2=$output_list
	2170	printf "\| $spalte1$spalte2 \| \n"
	2171
	2172	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2173	then
	2174	spalte1="memory demand / PE":; spalte2="$memory MB"
	2175	printf "\| $spalte1$spalte2 \| \n"
	2176	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2177	printf "\| $spalte1$spalte2 \| \n"
	2178	fi
	2179
	2180	if [[ $do_compile = true ]]
	2181	then
	2182	printf "\| \| \n"
	2183	printf "\| Files to be compiled: \| \n"
	2184	zeile=$source_list
	2185	while [[ "$zeile" != "" ]]
	2186	do
	2187	spalte3=$zeile
	2188	printf "\| $spalte3 \| \n"
	2189	zeile=$(echo "$zeile" \| cut -c61-)
	2190	done
	2191	fi
	2192	printf "#--------------------------------------------------------------#"
	2193
	2194
	2195
	2196	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2197	if [[ $do_trace = true ]]
	2198	then
	2199	(( i = 0 ))
	2200	while (( i < iin ))
	2201	do
	2202	(( i = i + 1 ))
	2203	if (( i == 1 ))
	2204	then
	2205	printf "\n\n >>> INPUT-file assignments:\n"
	2206	fi
	2207	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2208	done
	2209	(( i = 0 ))
	2210	while (( i < iout ))
	2211	do
	2212	(( i = i + 1 ))
	2213	if (( i == 1 ))
	2214	then
	2215	printf "\n\n >>> OUTPUT-file assignments:\n"
	2216	fi
	2217	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2218	done
	2219	(( i = 0 ))
	2220	while (( i < iic ))
	2221	do
	2222	(( i = i + 1 ))
	2223	if (( i == 1 ))
	2224	then
	2225	printf "\n\n >>> INPUT-commands:\n"
	2226	fi
	2227	printf "\n ${in_command[$i]}"
	2228	done
	2229	(( i = 0 ))
	2230	while (( i < ioc ))
	2231	do
	2232	(( i = i + 1 ))
	2233	if (( i == 1 ))
	2234	then
	2235	printf "\n\n >>> OUTPUT-commands:\n"
	2236	fi
	2237	printf "\n ${out_command[$i]}"
	2238	done
	2239	fi
	2240
	2241
	2242	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2243	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2244	then
	2245	antwort=dummy
	2246	printf "\n\n"
	2247	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2248	do
	2249	printf " >>> everything o.k. (y/n) ? "
	2250	read antwort
	2251	done
	2252	if [[ $antwort = n \|\| $antwort = N ]]
	2253	then
	2254	locat=user_abort; (( iec = 0 )); exit
	2255	fi
	2256	if [[ $do_batch = true ]]
	2257	then
	2258	printf " >>> batch-job will be created and submitted"
	2259	else
	2260	if [[ $local_compile = false ]]
	2261	then
	2262	printf " >>> MRUN will now continue to execute on this machine"
	2263	else
	2264	printf " >>> a test compilation will now be carried out on this machine"
	2265	fi
	2266	fi
	2267	fi
	2268
	2269
	2270
	2271
	2272	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2273	# CHENDE AKTIONEN DURCHGEFUEHRT
	2274	if [[ $do_batch = false ]]
	2275	then
	2276
	2277
	2278	# TEMPORAEREN KATALOG ERZEUGEN
	2279	mkdir -p $TEMPDIR
	2280	chmod go+rx $TEMPDIR
	2281	tmpcreate=true
	2282
	2283
	2284	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2285	# TEMPORAERES VERZEICHNIS KOPIEREN
	2286	if [[ $do_compile = true ]]
	2287	then
	2288
	2289	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2290	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2291	if [[ $localhost = nech ]]
	2292	then
	2293	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2294	if mkdir -p $TEMPDIR_COMPILE
	2295	then
	2296	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2297	printf "\n is generated as temporary directory for cross compiling\n"
	2298	else
	2299	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2300	printf "\n needed for cross compilation failed"
	2301	locat=compile
	2302	exit
	2303	fi
	2304	else
	2305	TEMPDIR_COMPILE=$TEMPDIR
	2306	fi
	2307
	2308
[82]	2309	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2310	line=""
	2311	grep "%depository_path" $config_file > tmp_mrun
	2312	while read line
	2313	do
	2314	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2315	then
	2316	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2317	then
[82]	2318	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2319	fi
[82]	2320	fi
	2321	done < tmp_mrun
[1]	2322
[82]	2323	line=""
	2324	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2325	while read line
	2326	do
	2327	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2328	then
[211]	2329	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2330	then
	2331	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2332	fi
[1]	2333	fi
[82]	2334	done < tmp_mrun
[1]	2335
[82]	2336	if [[ "$local_depository_path" = "" ]]
	2337	then
	2338	if [[ "$global_depository_path" != "" ]]
[1]	2339	then
[82]	2340	local_depository_path=$global_depository_path
[1]	2341	else
[82]	2342	printf "\n\n +++ no depository path found in configuration file"
	2343	printf "\n for local host \"$localhost\" "
	2344	printf "\n please set \"\%depository_path\" in configuration file\n"
	2345	locat=config_file; exit
[1]	2346	fi
[82]	2347	fi
	2348	eval local_depository_path=$local_depository_path
[215]	2349	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2350	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2351
[215]	2352
[82]	2353	basename=`print $mainprog \| cut -f1 -d"."`
	2354	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2355	if [[ ! -f $make_depository ]]
	2356	then
	2357	printf "\n"
	2358	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2359	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2360	else
	2361	cp $make_depository $TEMPDIR_COMPILE
[1]	2362	cd $TEMPDIR_COMPILE
[82]	2363	tar -xf $make_depository > /dev/null 2>&1
[1]	2364	cd - > /dev/null
	2365	fi
[82]	2366
	2367	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2368
	2369	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
	2370	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
	2371	# MAKEFILE EINTRAGEN
[211]	2372	# cd $TEMPDIR_COMPILE
	2373	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
	2374	# if [[ "$interface_file" != "" ]]
	2375	# then
	2376	# interface_file=`echo $interface_file \| cut -d"." -f1`
	2377	# mv Makefile Makefile_old
	2378	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
	2379	# fi
	2380	# cd - > /dev/null
[1]	2381	else
	2382	cp $executable ${TEMPDIR}/a.out
	2383	fi
	2384
	2385
	2386	# WECHSEL IN TEMPORAEREN KATALOG
	2387	cd $TEMPDIR
	2388	printf "\n *** changed to temporary directory: $TEMPDIR"
	2389
	2390
	2391	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2392	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2393	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2394	# ERMITTELN
	2395	(( i = 0 ))
	2396	while (( i < iout ))
	2397	do
	2398	(( i = i + 1 ))
	2399	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2400	then
	2401	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2402	else
	2403	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2404	fi
	2405	done
	2406
	2407
	2408	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2409	if [[ $do_compile = true ]]
	2410	then
	2411
	2412
	2413	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2414	printf "\n\n\n *** compilation starts \n$striche\n"
	2415	printf " *** compilation with make using following options:\n"
[211]	2416	printf " make depository: $make_depository"
[82]	2417	printf " compilername: $compiler_name\n"
	2418	printf " options: $fopts\n"
	2419	printf " preprocessor-directives: $cpp_options \n"
	2420	printf " linker-options: $lopts \n"
	2421	printf " source code files: $source_list \n"
	2422
	2423	if [[ $localhost = nech ]]
[1]	2424	then
[82]	2425	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2426	cp $TEMPDIR_COMPILE/a.out .
	2427	[[ $? != 0 ]] && compile_error=true
	2428	rm -rf $TEMPDIR_COMPILE
[312]	2429	elif [[ $localhost = ibmh ]]
	2430	then
[325]	2431	printf " compiler is called via ssh on \"plogin1\" \n"
	2432	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[312]	2433	[[ ! -f a.out ]] && compile_error=true
	2434	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[197]	2435	elif [[ $localhost = lcsgib ]]
	2436	then
[221]	2437	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
[372]	2438	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2439	[[ ! -f a.out ]] && compile_error=true
	2440	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2441	elif [[ $localhost = lcsgih ]]
	2442	then
[221]	2443	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
[366]	2444	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2445	[[ ! -f a.out ]] && compile_error=true
	2446	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2447	else
[118]	2448	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
[82]	2449	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	2450	fi
[1]	2451
	2452	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2453	then
	2454	printf "\n +++ error occured while compiling or linking"
	2455	locat=compile
[181]	2456
[182]	2457	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2458	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2459	# then
[181]	2460	exit
[197]	2461	# else
	2462	# locat=normal
	2463	# fi
[1]	2464	else
	2465	printf "$striche\n *** compilation finished \n"
	2466	fi
	2467	fi
	2468
	2469
	2470	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2471	if [[ $local_compile = true ]]
	2472	then
	2473	cd $HOME
	2474	rm -rf $TEMPDIR
	2475	locat=local_compile; exit
	2476	fi
	2477
	2478
	2479	# BEREITSTELLEN DER INPUT-DATEIEN
	2480	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2481	(( i = 0 ))
	2482	while (( i < iin ))
	2483	do
	2484	(( i = i + 1 ))
	2485	if (( i == 1 ))
	2486	then
	2487	printf "\n\n *** providing INPUT-files:\n$striche"
	2488	fi
	2489
	2490
	2491	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2492	if [[ "${transin[$i]}" = unavailable ]]
	2493	then
	2494	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2495	then
	2496	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2497	printf "\n is not available!"
	2498	else
	2499	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2500	printf "\n is not available!"
	2501	fi
	2502	continue
	2503	fi
	2504
	2505	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2506	files_for_pes=false; datentyp=file
	2507	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2508	then
	2509	files_for_pes=true; datentyp=directory
	2510	actionin[$i]=""
	2511	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2512	then
	2513	actionin[$i]=""
	2514	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2515	then
	2516	files_for_pes=true; datentyp=directory
	2517	actionin[$i]="ar"
	2518	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2519	then
	2520	actionin[$i]="ar"
	2521	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2522	then
	2523	files_for_pes=true; datentyp=directory
	2524	actionin[$i]="fl"
	2525	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2526	then
	2527	actionin[$i]="fl"
	2528	fi
	2529
	2530	if [[ $files_for_pes = true ]]
	2531	then
	2532	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2533	else
	2534	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2535	fi
	2536
	2537	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2538	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2539	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2540	# SERVER ZU HOLEN
	2541	if [[ "${actionin[$i]}" = fl ]]
	2542	then
	2543	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2544	if [[ $files_for_pes = false ]]
	2545	then
	2546	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2547	then
	2548	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2549	got_tmp[$i]=true
	2550	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2551	then
	2552	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2553	printf "\n *** trying to use backup copy in \"$WORK\" "
	2554	cp $WORK/${frelin[$i]} ${localin[$i]}
	2555	else
	2556	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2557	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2558	printf "\n *** trying to get copy from archive"
	2559	actionin[$i]=ar
	2560	fi
	2561	else
	2562	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2563	then
	2564	mkdir ${localin[$i]}
[149]	2565	cd $tmp_data_catalog/${frelin[$i]}
	2566	for file in $(ls *)
	2567	do
	2568	ln $file $TEMPDIR/${localin[$i]}
	2569	done
	2570	cd $TEMPDIR
[1]	2571	got_tmp[$i]=true
	2572	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2573	then
	2574	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2575	printf "\n *** trying to use backup copy in \"$WORK\" "
	2576	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2577	else
	2578	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2579	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2580	printf "\n *** trying to get copy from archive"
	2581	actionin[$i]=ar
	2582	fi
	2583	fi
	2584	fi
	2585
	2586
	2587	# DATEI LIEGT AUF ARCHIV-SERVER
	2588	if [[ "${actionin[$i]}" = ar ]]
	2589	then
	2590
	2591	if [[ $files_for_pes = false ]]
	2592	then
	2593	printf "\n file will be restored from archive-system ($archive_system)!"
	2594	else
	2595	printf "\n directory will be restored from archive-system ($archive_system)!"
	2596	fi
	2597
	2598	file_restored=false
	2599
	2600	if [[ $archive_system = asterix ]]
	2601	then
	2602	do_stagein=true
	2603	(( stagein_anz = 0 ))
	2604	while [[ $do_stagein = true ]]
	2605	do
	2606	if [[ $files_for_pes = false ]]
	2607	then
	2608	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2609	else
	2610	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2611	fi
	2612	cat STAGEIN_OUTPUT
	2613	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2614	then
	2615	file_restored=true
	2616	do_stagein=false
	2617	else
	2618	(( stagein_anz = stagein_anz + 1 ))
	2619	if (( stagein_anz == 10 ))
	2620	then
	2621	printf "\n +++ stagein stoped after 10 tries"
	2622	locat=stage
	2623	exit
	2624	fi
	2625	printf "\n +++ restoring from archive failed, trying again:"
	2626	sleep 900
	2627	fi
	2628	done
	2629	elif [[ $archive_system = DMF ]]
	2630	then
	2631	if [[ $files_for_pes = false ]]
	2632	then
	2633	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	2634	locat=DMF
	2635	exit
	2636	else
	2637	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	2638	cp -r $ARCHIVE/${frelin[$i]} $PWD
	2639	file_restored=true
	2640	fi
	2641	elif [[ $archive_system = tivoli ]]
	2642	then
	2643	if [[ $files_for_pes = false ]]
	2644	then
[399]	2645	if [[ $localhost = lcsgih ]]
[1]	2646	then
[399]	2647	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2648	else
[399]	2649	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2650	fi
	2651	else
	2652	(( inode = 0 ))
	2653	while (( inode < nodes ))
	2654	do
[399]	2655	if [[ $localhost = lcsgih ]]
[1]	2656	then
[399]	2657	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2658	else
[399]	2659	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2660	fi
	2661	(( inode = inode + 1 ))
	2662	done
	2663	fi
	2664	file_restored=true
	2665	elif [[ $archive_system = ut ]]
	2666	then
	2667	if [[ $files_for_pes = false ]]
	2668	then
	2669	cp $UT/${frelin[$i]} .
	2670	else
	2671	(( inode = 0 ))
	2672	while (( inode < nodes ))
	2673	do
	2674	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	2675	(( inode = inode + 1 ))
	2676	done
	2677	fi
	2678	file_restored=true
	2679	else
	2680	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	2681	locat=rearchive
	2682	exit
	2683	fi
	2684
	2685	if [[ $file_restored = true ]]
	2686	then
	2687
	2688	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	2689	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	2690	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	2691	if [[ $files_for_pes = false ]]
	2692	then
	2693	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	2694	else
	2695	mkdir $tmp_data_catalog/${frelin[$i]}
	2696	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	2697	fi
	2698	got_tmp[$i]=true
	2699
	2700	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	2701	mv ${frelin[$i]} ${localin[$i]}
	2702
	2703	fi
	2704	fi
	2705
	2706
	2707	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	2708	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	2709	then
	2710
	2711	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	2712	then
	2713
	2714	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	2715	printf "\n file will be provided for $numprocs processors"
	2716	mkdir ${localin[$i]}
	2717	ival=$numprocs
	2718	(( ii = 0 ))
	2719	while (( ii <= ival-1 ))
	2720	do
	2721	if (( ii < 10 ))
	2722	then
	2723	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	2724	elif (( ii < 100 ))
	2725	then
	2726	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	2727	elif (( ii < 1000 ))
	2728	then
	2729	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	2730	else
	2731	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	2732	fi
	2733	(( ii = ii + 1 ))
	2734	done
	2735
	2736	else
	2737
	2738	if [[ $files_for_pes = true ]]
	2739	then
	2740
	2741	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	2742	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	2743	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	2744	# PER MOVE UMBENANNT WERDEN
	2745	printf "\n providing $numprocs files for the respective processors"
	2746	mkdir ${localin[$i]}
[183]	2747	if [[ $link_local_input = true ]]
	2748	then
	2749	printf " using ln -f\n"
	2750	cd ${absnamein[$i]}
	2751	for file in $(ls *)
	2752	do
	2753	ln -f $file ${localin[$i]}
	2754	done
	2755	cd $TEMPDIR
	2756	fi
	2757	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	2758	if [[ ! -f "${localin[$i]}/_0000" ]]
	2759	then
	2760	if [[ $link_local_input = true ]]
	2761	then
	2762	printf " ln failed for .../_0000, using cp...\n"
	2763	fi
	2764	cp -r ${absnamein[$i]}/* ${localin[$i]}
	2765	fi
[1]	2766
	2767	else
	2768	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	2769	if [[ $link_local_input = true ]]
	2770	then
	2771	printf " using ln -f\n"
	2772	ln -f ${absnamein[$i]} ${localin[$i]}
	2773	fi
	2774	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	2775	if [[ ! -f "${localin[$i]}" ]]
	2776	then
	2777	if [[ $link_local_input = true ]]
	2778	then
	2779	printf " ln failed, using cp...\n"
	2780	fi
	2781	cp ${absnamein[$i]} ${localin[$i]}
	2782	fi
[1]	2783	fi
	2784	fi
	2785	fi
	2786
	2787	done
	2788	if (( i != 0 ))
	2789	then
	2790	printf "\n$striche\n *** all INPUT-files provided \n"
	2791	fi
	2792
	2793
	2794	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	2795	(( i = 0 ))
	2796	while (( i < iic ))
	2797	do
	2798	(( i = i + 1 ))
	2799	if (( i == 1 ))
	2800	then
	2801	printf "\n\n *** execution of INPUT-commands:\n$striche"
	2802	fi
	2803	printf "\n >>> ${in_command[$i]}"
	2804	eval ${in_command[$i]}
	2805	if (( i == iic ))
	2806	then
	2807	printf "\n$striche\n"
	2808	fi
	2809	done
	2810
	2811
	2812	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	2813	cpurest=${cpumax}.
	2814
	2815
[260]	2816	# START DVR STREAMING SERVER
	2817	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	2818	then
	2819	if [[ "$dvr_server" != "" ]]
	2820	then
	2821
	2822	printf "\n\n *** preparing the dvr streaming server configuration file"
	2823
	2824	# Check, if a dvr server is already running
	2825	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	2826	if [[ "$running_dvrserver_id" != "" ]]
	2827	then
	2828
[261]	2829	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	2830	printf "\n This server is used instead starting a new one!"
[261]	2831	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	2832
	2833	else
	2834
	2835	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	2836	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	2837	then
	2838	cp ${PALM_BIN}/.dvrserver.config .
	2839
	2840	# Entering the BASEDIR, UID and GID into this file
	2841	user_id=`id -u`
	2842	group_id=`id -g`
	2843	# & is needed as seperator, because TEMPDIR contains /
	2844	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	2845	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	2846	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	2847	mv .dvrserver.3 .dvrserver.config
	2848	rm .dvrserver.1 .dvrserver.2
	2849
	2850	# Start dvr server in background, get his id and print on terminal
	2851	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	2852	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	2853	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	2854	local_dvrserver_running=.TRUE.
	2855	else
	2856	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	2857	printf "\n \"$PALM_BIN\" "
	2858	locat=dvr
	2859	exit
	2860	fi
	2861
	2862	fi
	2863
	2864	else
	2865	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	2866	fi
	2867	fi
	2868
	2869
	2870	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	2871	# LESEN VON PALM)
	2872	cat > ENVPAR << %%END%%
	2873	&envpar run_identifier = '$fname', host = '$localhost',
	2874	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2875	maximum_cpu_time_allowed = ${cpumax}.,
	2876	revision = '$global_revision',
	2877	local_dvrserver_running = $local_dvrserver_running /
	2878
	2879	%%END%%
	2880
	2881
[1]	2882	# PROGRAMMSTART
	2883	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	2884	PATH=$PATH:$TEMPDIR
	2885
[359]	2886	# MPI debug option (argument checking, slows down execution due to increased latency)
	2887	if [[ "$mpi_debug" = true ]]
	2888	then
	2889	export MPI_CHECK_ARGS=1
	2890	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	2891	fi
	2892
[1]	2893	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	2894	then
	2895	if [[ "$ENVIRONMENT" = BATCH ]]
	2896	then
[211]	2897	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	2898	then
	2899	printf "\n +++ debug is allowed in interactive mode only"
	2900	locat=debug
	2901	exit
	2902	fi
[1]	2903	fi
[5]	2904	if [[ $localhost = decalpha ]]
[1]	2905	then
	2906	dxladebug a.out
	2907	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	2908	then
	2909
	2910	# SETUP THE IBM MPI ENVIRONMENT
	2911	export MP_SHARED_MEMORY=yes
	2912	export AIXTHREADS_SCOPE=S
	2913	export OMP_NUM_THREADS=$threads_per_task
	2914	export AUTHSTATE=files
	2915	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2916
	2917	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	2918	export MP_ADAPTER_USE=shared
	2919	export MP_CPU_USE=multiple
	2920	export MP_TIMEOUT=1200
	2921
	2922	unset MP_TASK_AFFINITY
	2923
	2924	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	2925	#(( ii = 1 ))
	2926	#while (( ii <= $numprocs ))
	2927	#do
	2928	# echo $localhost_realname >> hostfile
	2929	# (( ii = ii + 1 ))
	2930	#done
	2931	#export MP_HOSTFILE=hostfile
	2932
	2933	if [[ "$LOADLBATCH" = yes ]]
	2934	then
	2935	totalview poe a.out $ROPTS
	2936	else
	2937	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2938	export TVDSVRLAUNCHCMD=ssh
	2939	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2940	fi
[211]	2941	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	2942	then
	2943	# CURRENTLY NO DEBUGGER ON LCSGI
	2944	if [[ $run_coupled_model = true ]]
	2945	then
	2946	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	2947	locat=debug
	2948	exit
[223]	2949	else
	2950	echo "no_coupling" > runfile_atmos
[211]	2951	fi
	2952	(( ii = $numprocs / $threads_per_task ))
	2953	export OMP_NUM_THREADS=$threads_per_task
	2954	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	2955	if [[ $threads_per_task != 1 ]]
	2956	then
	2957	printf "\n threads per task: $threads_per_task"
	2958	fi
	2959	printf "\n\n"
[223]	2960	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	2961	then
	2962	# export MPI_LAUNCH_TIMEOUT=360
	2963	if [[ "$totalview" = true ]]
	2964	then
	2965	printf "\n running totalview debugger"
	2966	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
	2967	else
	2968	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	2969	fi
	2970	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	2971	then
	2972	# ulimit -s 300000 # A too large stack size causes problems
	2973	# export MV2_NUM_PORTS=2
	2974	# export MV2_CPU_MAPPING=0:1:2:3
[362]	2975	if [[ "$totalview" = true ]]
	2976	then
	2977	printf "\n running totalview debugger"
	2978	mpiexec -tv ./a.out $ROPTS < runfile_atmos
	2979	else
	2980	mpiexec ./a.out $ROPTS < runfile_atmos
	2981	fi
[223]	2982	fi
[1]	2983	else
	2984	printf "\n +++ no debug available on \"$localhost\" "
	2985	printf "\n or not implemented in mrun so far"
	2986	locat=debug
	2987	exit
	2988	fi
	2989	else
	2990	if [[ -n $numprocs ]]
	2991	then
	2992	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	2993	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	2994	then
	2995	# SETUP THE IBM MPI ENVIRONMENT
[312]	2996	if [[ $host != ibmh ]]
	2997	then
	2998	export MP_SHARED_MEMORY=yes
	2999	export AIXTHREAD_SCOPE=S
	3000	export OMP_NUM_THREADS=$threads_per_task
	3001	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	3002	export AUTHSTATE=files
	3003	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3004	# export MP_PRINTENV=yes
[1]	3005
[312]	3006	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	3007	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	3008	export MP_WAIT_MODE=poll
	3009	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	3010	fi
[1]	3011	if [[ "$LOADLBATCH" = yes ]]
	3012	then
	3013	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	3014	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3015	then
[102]	3016	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3017	else
[343]	3018	if [[ $run_coupled_model = false ]]
	3019	then
	3020	if [[ "$ocean_file_appendix" = true ]]
	3021	then
	3022	echo "precursor_ocean" > runfile_atmos
	3023	else
	3024	echo "precursor_atmos" > runfile_atmos
	3025	fi
	3026	else
	3027	(( iia = $numprocs_atmos / $threads_per_task ))
	3028	(( iio = $numprocs_ocean / $threads_per_task ))
	3029	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3030	printf "\n using $coupled_mode coupling"
	3031	printf "\n\n"
	3032	echo "coupled_run $iia $iio" > runfile_atmos
	3033	fi
	3034	poe ./a.out $ROPTS < runfile_atmos
[1]	3035	fi
	3036	else
	3037	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
	3038	then
[102]	3039	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[1]	3040	elif [[ $localhost = ibmy ]]
	3041	then
	3042	if [[ -f $hostfile ]]
	3043	then
	3044	cp $hostfile hostfile
	3045	else
	3046	(( ii = 1 ))
	3047	while (( ii <= $numprocs ))
	3048	do
	3049	echo $localhost_realname >> hostfile
	3050	(( ii = ii + 1 ))
	3051	done
	3052	fi
	3053	export MP_HOSTFILE=hostfile
[331]	3054	if [[ $run_coupled_model = false ]]
	3055	then
	3056	if [[ "$ocean_file_appendix" = true ]]
	3057	then
	3058	echo "precursor_ocean" > runfile_atmos
	3059	else
	3060	echo "precursor_atmos" > runfile_atmos
	3061	fi
	3062	else
	3063	(( iia = $numprocs_atmos / $threads_per_task ))
	3064	(( iio = $numprocs_ocean / $threads_per_task ))
	3065	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3066	printf "\n using $coupled_mode coupling"
	3067	printf "\n\n"
	3068	echo "coupled_run $iia $iio" > runfile_atmos
	3069	fi
	3070	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3071
[1]	3072	else
	3073	if [[ "$host_file" = "" ]]
	3074	then
	3075	printf "\n +++ no hostfile given in configuration file"
	3076	locat=config_file
	3077	exit
	3078	else
	3079	eval host_file=$host_file
	3080	fi
	3081	export MP_HOSTFILE=$host_file
[102]	3082	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3083	fi
	3084	fi
[251]	3085	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3086	then
	3087	(( ii = nodes ))
	3088	if [[ $ii = 1 ]]
	3089	then
	3090	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3091	export MPIPROGINF=YES
[61]	3092	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3093	echo "*** execution on single node with mpirun"
[102]	3094	mpirun -np $numprocs ./a.out $ROPTS
[1]	3095	else
	3096	(( i = 0 ))
	3097	while (( i < ii ))
	3098	do
	3099	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3100	(( i = i + 1 ))
	3101	done
	3102
	3103	echo "#!/bin/sh" > mpi_exec_shell
	3104	echo " " >> mpi_exec_shell
	3105	echo "set -u" >> mpi_exec_shell
	3106	echo "F_ERRCNT=0" >> mpi_exec_shell
	3107	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3108	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3109	echo "cpurest=$cpurest" >> mpi_exec_shell
	3110	echo "fname=$fname" >> mpi_exec_shell
	3111	echo "localhost=$localhost" >> mpi_exec_shell
	3112	echo "return_addres=$return_addres" >> mpi_exec_shell
	3113	echo "return_username=$return_username" >> mpi_exec_shell
	3114	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3115	echo "write_binary=$write_binary" >> mpi_exec_shell
	3116	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3117	echo " " >> mpi_exec_shell
	3118	echo "export F_ERRCNT" >> mpi_exec_shell
	3119	echo "export MPIPROGINV" >> mpi_exec_shell
	3120	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3121	echo "export cpurest" >> mpi_exec_shell
	3122	echo "export fname" >> mpi_exec_shell
	3123	echo "export localhost" >> mpi_exec_shell
	3124	echo "export return_addres" >> mpi_exec_shell
	3125	echo "export return_username" >> mpi_exec_shell
	3126	echo "export tasks_per_node" >> mpi_exec_shell
	3127	echo "export write_binary" >> mpi_exec_shell
	3128	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3129	echo " " >> mpi_exec_shell
[102]	3130	echo "exec ./a.out" >> mpi_exec_shell
[1]	3131
	3132	chmod u+x mpi_exec_shell
	3133	export MPIPROGINF=YES
	3134	mpirun -f multinode_config &
	3135	wait
	3136
	3137	fi
[82]	3138	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
[1]	3139	then
	3140
	3141	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3142	# DOES NOT EXIST
[179]	3143	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	3144	then
[179]	3145	if [[ -f $hostfile ]]
	3146	then
	3147	cp $hostfile hostfile
	3148	else
	3149	(( ii = 1 ))
	3150	while (( ii <= $numprocs / $threads_per_task ))
	3151	do
	3152	echo $localhost_realname >> hostfile
	3153	(( ii = ii + 1 ))
	3154	done
	3155	fi
	3156	eval zeile=\"`head -n $ii hostfile`\"
	3157	printf "\n *** running on: $zeile"
[1]	3158	fi
[179]	3159
[1]	3160	(( ii = $numprocs / $threads_per_task ))
	3161	export OMP_NUM_THREADS=$threads_per_task
[246]	3162	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3163	if [[ $threads_per_task != 1 ]]
	3164	then
[405]	3165	# increase stack size to unlimited, because large runs
	3166	# may abort otherwise
	3167	ulimit -Ss unlimited
	3168	printf "\n threads per task: $threads_per_task stacksize: unlimited"
[1]	3169	fi
[102]	3170	if [[ $run_coupled_model = false ]]
[1]	3171	then
[291]	3172	if [[ "$ocean_file_appendix" = true ]]
	3173	then
	3174	echo "precursor_ocean" > runfile_atmos
	3175	else
	3176	echo "precursor_atmos" > runfile_atmos
	3177	fi
[102]	3178	printf "\n\n"
[179]	3179	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3180	then
[221]	3181	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3182	then
[366]	3183	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
	3184	# export MPI_DSM_DISTRIBUTE=1
	3185	# MPI_DSM_CPULIST: pin MPI processes to cores
[377]	3186	if [[ $use_openmp = false ]]
	3187	then
[412]	3188	if [[ "$sgi_feature" = ice2 ]]
	3189	then
	3190	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
	3191	else
	3192	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
	3193	fi
[377]	3194	fi
[366]	3195	# MPI_IB_RAILS: use both IB rails on ICE2
	3196	export MPI_BUFS_PER_HOST=512
	3197	export MPI_IB_RAILS=2
[369]	3198	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
	3199	export MPI_CONNECTIONS_THRESHOLD=8192
[412]	3200	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
[223]	3201	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
[388]	3202
	3203	# next is test for openmp usage
	3204	# mpiexec -n $ii -pernode ./a.out $ROPTS < runfile_atmos
[221]	3205	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3206	then
[374]	3207	export MV2_NUM_PORTS=2
[376]	3208	# The default setting of MV2_CPU_MAPPING gives best results
[405]	3209	# export MV2_ENABLE_AFFINITY=1
[376]	3210	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
[412]	3211	# if [[ "$sgi_feature" = ice2 ]]
	3212	# then
	3213	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
	3214	# else
	3215	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
	3216	# fi
	3217	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
[405]	3218	if [[ $threads_per_task != 1 ]]
	3219	then
	3220	mpiexec -npernode 1 ./a.out $ROPTS < runfile_atmos
	3221	else
	3222	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
	3223	fi
[221]	3224	fi
[179]	3225	elif [[ $host = lcxt4 ]]
	3226	then
[223]	3227	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[164]	3228	else
[223]	3229	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3230	fi
[1]	3231	else
[164]	3232
[206]	3233	# currently there is no full MPI-2 support on ICE and XT4
	3234	(( iia = $numprocs_atmos / $threads_per_task ))
	3235	(( iio = $numprocs_ocean / $threads_per_task ))
	3236	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3237	printf "\n using $coupled_mode coupling"
[102]	3238	printf "\n\n"
[164]	3239
[206]	3240	if [[ $coupled_mode = "mpi2" ]]
[164]	3241	then
[206]	3242	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3243	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3244	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3245	then
[197]	3246
[221]	3247	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3248	then
	3249	# export MPI_LAUNCH_TIMEOUT=360
	3250	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3251	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3252	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3253	then
	3254	# ulimit -s 300000 # A too large stack size causes problems
	3255	# export MV2_NUM_PORTS=2
	3256	# export MV2_CPU_MAPPING=0:1:2:3
	3257	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3258	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3259	fi
[197]	3260
[206]	3261	elif [[ $host = lcxt4 ]]
	3262	then
[197]	3263
[206]	3264	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3265	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3266
	3267	else
	3268	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3269	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3270	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3271	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3272	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3273	fi
	3274	wait
	3275
[164]	3276	else
	3277
[206]	3278	echo "coupled_run $iia $iio" > runfile_atmos
	3279	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3280	then
	3281
[221]	3282	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3283	then
	3284	# export MPI_LAUNCH_TIMEOUT=360
	3285	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3286	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3287	then
	3288	# ulimit -s 300000 # A too large stack size causes problems
	3289	# export MV2_NUM_PORTS=2
	3290	# export MV2_CPU_MAPPING=0:1:2:3
	3291	mpiexec ./a.out $ROPTS < runfile_atmos
	3292	fi
[206]	3293
	3294	elif [[ $host = lcxt4 ]]
	3295	then
	3296
	3297	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3298
[367]	3299	elif [[ $host = lck ]]
	3300	then
	3301	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
[206]	3302	fi
	3303	wait
[164]	3304	fi
[102]	3305
	3306	# if [[ $scirocco = true ]]
	3307	# then
	3308	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
	3309	# else
	3310	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
	3311	# fi
[206]	3312	fi
[1]	3313	elif [[ $host = decalpha ]]
	3314	then
[102]	3315	dmpirun -np $numprocs a.out $ROPTS
[1]	3316	elif [[ $host = lctit ]]
	3317	then
	3318	export runfile=runfile.$kennung
	3319
	3320	echo "cd $PWD" > $runfile
	3321	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
	3322	echo "export cpurest=$cpurest" >> $runfile
	3323	echo "export fname=$fname" >> $runfile
	3324	echo "export localhost=$localhost" >> $runfile
	3325	echo "export return_addres=$return_addres" >> $runfile
	3326	echo "export return_username=$return_username" >> $runfile
	3327	echo "export tasks_per_node=$tasks_per_node" >> $runfile
	3328	echo "export write_binary=$write_binary" >> $runfile
	3329	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
	3330	echo "./a.out" >> $runfile
	3331	chmod u+x $runfile
	3332
	3333	if [[ "$QUEUE" = interactive ]]
	3334	then
[102]	3335	mpirun -np $numprocs a.out $ROPTS
[1]	3336	else
[127]	3337	(( mem_tsubame = $memory / 1024.0 ))
	3338	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
[118]	3339	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
[265]	3340	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
	3341	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
[1]	3342	fi
	3343
	3344	rm $runfile
	3345	else
[102]	3346	mpprun -n $numprocs a.out $ROPTS
[1]	3347	fi
	3348	[[ $? != 0 ]] && execution_error=true
	3349
	3350
	3351	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3352	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3353	then
	3354	apprentice
	3355	fi
	3356	else
[102]	3357	a.out $ROPTS
[1]	3358	fi
	3359	fi
	3360	if [[ $? != 0 \|\| $execution_error = true ]]
	3361	then
	3362
	3363	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3364	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3365	printf "\n +++ runtime error occured"
	3366	locat=execution
	3367	exit
	3368	else
[102]	3369	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3370	printf "\n$striche\n *** execution finished \n"
[260]	3371
[261]	3372	# Stop the dvr streaming server and process the dvr output in order
	3373	# to create dvrs- and html-files containing all streams
[260]	3374	if [[ "$dvrserver_id" != "" ]]
	3375	then
	3376	kill $dvrserver_id
	3377	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3378
[262]	3379	# If there is a directory, data have been output by the
	3380	# streaming server. Otherwise, user has chosen dvrp_output=local
	3381	if [[ -d DATA_DVR ]]
	3382	then
[261]	3383
[262]	3384	# Add the current dvr configuration file to the dvr output
	3385	# directory
	3386	cp .dvrserver.config DATA_DVR
	3387
	3388	# Process the dvr output (option -s for also generating
	3389	# sequence mode data)
	3390	process_dvr_output -d DATA_DVR -f $fname -s
	3391
	3392	else
	3393
	3394	# Process the local output
	3395	process_dvr_output -l -d DATA_DVR -f $fname
	3396
	3397	fi
	3398
	3399	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3400	then
	3401
	3402	# Process dvr output generated in local mode (dvrp_output=local)
	3403	process_dvr_output -l -d DATA_DVR -f $fname
	3404
[260]	3405	fi
[1]	3406	fi
	3407
	3408
	3409
	3410	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3411	(( i = 0 ))
	3412	while (( i < ioc ))
	3413	do
	3414	(( i = i + 1 ))
	3415	if (( i == 1 ))
	3416	then
	3417	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3418	fi
	3419	printf "\n >>> ${out_command[$i]}"
	3420	eval ${out_command[$i]}
	3421	if (( i == ioc ))
	3422	then
	3423	printf "\n$striche\n"
	3424	fi
	3425	done
	3426
	3427
	3428	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3429	if [[ $do_trace = true ]]
	3430	then
	3431	printf "\n\n"
	3432	ls -al
	3433	fi
	3434
	3435
	3436
	3437	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3438	(( i = 0 ))
	3439	while (( i < iout ))
	3440	do
	3441	(( i = i + 1 ))
	3442	if (( i == 1 ))
	3443	then
	3444	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3445	fi
	3446
	3447	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3448	files_for_pes=false; filetyp=file
	3449	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3450	then
	3451	files_for_pes=true; filetyp=directory
	3452	actionout[$i]=""
	3453	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3454	then
	3455	actionout[$i]=""
	3456	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3457	then
	3458	files_for_pes=true; filetyp=directory
	3459	actionout[$i]="ar"
	3460	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3461	then
	3462	actionout[$i]="ar"
	3463	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3464	then
	3465	files_for_pes=true; filetyp=directory
	3466	actionout[$i]="fl"
	3467	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3468	then
	3469	actionout[$i]="fl"
	3470	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3471	then
	3472	files_for_pes=true; filetyp=directory
	3473	actionout[$i]="tr"
	3474	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3475	then
	3476	actionout[$i]="tr"
	3477	fi
	3478
	3479	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3480	then
	3481	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3482	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3483	then
	3484	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3485	else
	3486
	3487
	3488	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3489	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3490	# REMOTE-RECHNUNGEN
	3491	if [[ "${actionout[$i]}" = tr ]]
	3492	then
	3493	if [[ $localhost != $fromhost ]]
	3494	then
	3495	if [[ $files_for_pes = false ]]
	3496	then
	3497	cps=""
	3498	cst=""
	3499	else
	3500	cps=-c
	3501	cst="/"
	3502	fi
[325]	3503	if [[ $localhost = ibmb \|\| $localhost = nech ]]
[1]	3504	then
	3505
	3506	# TRANSFER IN EIGENSTAENDIGEM JOB
	3507	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3508	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3509	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3510	if [[ $files_for_pes = false ]]
	3511	then
	3512	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3513	else
	3514	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3515	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3516	fi
	3517
	3518	echo "set -x" > transfer_${localout[$i]}
	3519	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3520
	3521	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	3522	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	3523	printf "\n or higher cycle\n"
	3524	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3525
[1]	3526	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3527
	3528	if [[ $localhost = nech ]]
	3529	then
[82]	3530	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3531	else
	3532	if [[ "$LOGNAME" = b323013 ]]
	3533	then
[164]	3534	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3535	else
[164]	3536	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3537	fi
	3538	fi
	3539
	3540	else
	3541
	3542	# TRANSFER INNERHALB DIESES JOBS
	3543	transfer_failed=false
[82]	3544	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	3545	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	3546	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3547	[[ $? != 0 ]] && transfer_failed=true
[1]	3548
	3549	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3550	# LOKALER MASCHINE ANLEGEN
	3551	if [[ $transfer_failed = true ]]
	3552	then
	3553	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3554	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3555
	3556	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3557	# ANLEGEN.
	3558	eval local_catalog=${pathout[$i]}
	3559	if [[ ! -d $local_catalog ]]
	3560	then
	3561	printf " *** local directory does not exist. Trying to create:\n"
	3562	printf " $local_catalog \n"
	3563	mkdir -p $local_catalog
	3564	fi
	3565	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3566	transfer_problems=true
	3567	fi
	3568	fi
	3569	else
	3570
	3571	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	3572	actionout[$i]=""
	3573	fi
	3574	fi
	3575
	3576
	3577	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3578	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3579	# REMOTE-RECHNUNGEN
	3580	if [[ "${actionout[$i]}" = tra ]]
	3581	then
	3582	if [[ $localhost != $fromhost ]]
	3583	then
	3584	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
	3585	then
	3586
	3587	# TRANSFER IN EIGENSTAENDIGEM JOB
	3588	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3589	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3590	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3591	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3592
	3593	echo "set -x" > transfer_${localout[$i]}
	3594	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3595
	3596	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	3597	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	3598	printf "\n or higher cycle\n"
	3599	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3600
[1]	3601	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3602
	3603	if [[ $localhost = nech ]]
	3604	then
[82]	3605	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3606	else
	3607	if [[ $LOGNAME = b323013 ]]
	3608	then
[164]	3609	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3610	else
[164]	3611	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3612	fi
	3613	fi
	3614
	3615	else
	3616
	3617	# TRANSFER INNERHALB DIESES JOBS
	3618	transfer_failed=false
[82]	3619	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	3620	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	3621	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3622	[[ $? != 0 ]] && transfer_failed=true
[1]	3623
	3624	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3625	# LOKALER MASCHINE ANLEGEN
	3626	if [[ $transfer_failed = true ]]
	3627	then
	3628	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3629	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3630
	3631	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3632	# ANLEGEN
	3633	eval local_catalog=${pathout[$i]}
	3634	if [[ ! -d $local_catalog ]]
	3635	then
	3636	printf " *** local directory does not exist. Trying to create:\n"
	3637	printf " $local_catalog \n"
	3638	mkdir -p $local_catalog
	3639	fi
	3640
	3641	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3642	transfer_problems=true
	3643	fi
	3644	fi
	3645	else
	3646
	3647	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	3648	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	3649	actionout[$i]=a
	3650	fi
	3651	fi
	3652
	3653
	3654	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	3655	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	3656	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	3657	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	3658	if [[ "${actionout[$i]}" = fl ]]
	3659	then
	3660	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3661	chmod g+rx $tmp_data_catalog
	3662	if [[ $files_for_pes = false ]]
	3663	then
	3664	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3665	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3666	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	3667	else
	3668	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	3669	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3670	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	3671	cd ${localout[$i]}
	3672	for file in $(ls *)
	3673	do
	3674	ln -f $file $tmp_data_catalog/${frelout[$i]}
	3675	done
	3676	cd $TEMPDIR
[1]	3677	fi
	3678
	3679
	3680	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	3681	if [[ $store_on_archive_system = true ]]
	3682	then
	3683
	3684	if [[ $archive_system = asterix ]]
	3685	then
	3686	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3687	if [[ $files_for_pes = false ]]
	3688	then
	3689	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3690	else
	3691	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3692	fi
	3693	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3694	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	3695	echo "then" >> archive_${frelout[$i]}
	3696	echo " do_stageout=false" >> archive_${frelout[$i]}
	3697	echo "else" >> archive_${frelout[$i]}
	3698	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	3699	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	3700	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	3701	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	3702	if [[ $files_for_pes = false ]]
	3703	then
	3704	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	3705	else
	3706	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	3707	fi
	3708	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	3709	echo "fi" >> archive_${frelout[$i]}
	3710	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3711	elif [[ $archive_system = DMF ]]
	3712	then
	3713	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3714	if [[ $files_for_pes = false ]]
	3715	then
	3716	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	3717	locat=DMF
	3718	exit
	3719	else
	3720	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	3721	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	3722	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	3723	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	3724	fi
	3725	elif [[ $archive_system = tivoli ]]
	3726	then
	3727	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3728	if [[ $files_for_pes = false ]]
	3729	then
	3730	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3731	echo "set -x" >> archive_${frelout[$i]}
	3732	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3733	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3734	else
	3735
	3736	echo "set -x" >> archive_${frelout[$i]}
	3737	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3738	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3739	cd $tmp_data_catalog
	3740	all_files=`ls -1 ${frelout[$i]}/*`
	3741	cd - > /dev/null
	3742	(( inode = 0 ))
	3743	(( tp1 = tasks_per_node + 1 ))
	3744	while (( inode < nodes ))
	3745	do
	3746	# echo "*** all_files = \"$all_files\" "
	3747	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3748	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3749	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	3750	# echo "*** files = \"$files\" "
	3751	# echo "*** all_files = \"$all_files\" "
[416]	3752	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3753	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3754	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
	3755	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[397]	3756	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3757	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[1]	3758	(( inode = inode + 1 ))
	3759	done
	3760	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3761	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3762	fi
	3763	elif [[ $archive_system = ut ]]
	3764	then
	3765	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3766	if [[ $files_for_pes = false ]]
	3767	then
	3768	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3769	echo "set -x" >> archive_${frelout[$i]}
	3770	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3771	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3772	else
	3773
	3774	echo "set -x" >> archive_${frelout[$i]}
	3775	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3776	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3777	cd $tmp_data_catalog
	3778	all_files=`ls -1 ${frelout[$i]}/*`
	3779	cd - > /dev/null
	3780	(( inode = 0 ))
	3781	(( tp1 = tasks_per_node + 1 ))
	3782	while (( inode < nodes ))
	3783	do
	3784	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3785	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3786	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3787	(( inode = inode + 1 ))
	3788	done
	3789	fi
	3790	elif [[ $archive_system = none ]]
	3791	then
	3792	printf " +++ archiving on $localhost not available!\n"
	3793	fi
	3794
	3795	if [[ $archive_system != none ]]
	3796	then
[399]	3797	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
[1]	3798	then
[164]	3799	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[416]	3800	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
[1]	3801	elif [[ $localhost = nech ]]
	3802	then
[82]	3803	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3804	fi
	3805	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3806	fi
	3807	else
[399]	3808	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
[1]	3809	fi
	3810
	3811
	3812	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	3813	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3814	if [[ $files_for_pes = false ]]
	3815	then
	3816	cat /dev/null > ${pathout[$i]}
	3817	else
	3818	mkdir -p ${pathout[$i]}
	3819	fi
	3820
	3821	fi
	3822
	3823
	3824	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	3825	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	3826	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3827	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	3828	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	3829	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	3830	if [[ "${actionout[$i]}" = ar ]]
	3831	then
	3832	if [[ $files_for_pes = false ]]
	3833	then
	3834	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3835	printf "\n ${pathout[$i]}"
	3836	printf "\n File will be copied to archive-system ($archive_system) !\n"
	3837	else
	3838	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	3839	printf "\n ${pathout[$i]}"
	3840	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	3841	fi
	3842	mv ${localout[$i]} ${frelout[$i]}
	3843
	3844	file_saved=false
	3845
	3846	if [[ $archive_system = asterix ]]
	3847	then
	3848	do_stageout=true
	3849	(( stageout_anz = 0 ))
	3850	while [[ $do_stageout = true ]]
	3851	do
	3852	if [[ $files_for_pes = false ]]
	3853	then
	3854	stageout ${frelout[$i]} > STAGE_OUTPUT
	3855	else
	3856	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	3857	fi
	3858	cat STAGE_OUTPUT
	3859	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	3860	then
	3861	file_saved=true
	3862	do_stageout=false
	3863	else
	3864	if [[ $files_for_pes = false ]]
	3865	then
	3866	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	3867	else
	3868	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	3869	fi
	3870	(( stageout_anz = stageout_anz + 1 ))
	3871	if (( stageout_anz == 10 ))
	3872	then
	3873	printf "\n +++ stoped after 10 unsuccessful tries!"
	3874	archive_save=false
	3875	do_stageout=false
	3876	else
	3877	printf "\n *** new try to store on archive after 15 min:"
	3878	sleep 900
	3879	fi
	3880	fi
	3881	done
	3882	elif [[ $archive_system = DMF ]]
	3883	then
	3884	if [[ $files_for_pes = false ]]
	3885	then
	3886	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	3887	locat=DMF
	3888	exit
	3889	else
	3890	rm -rf $ARCHIVE/${frelout[$i]}
	3891	cp -r ${frelout[$i]} $ARCHIVE
	3892	fi
	3893	file_saved=true
	3894	elif [[ $archive_system = tivoli ]]
	3895	then
	3896	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3897	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3898	# GELEGT WERDEN
	3899	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3900	chmod g+rx $tmp_data_catalog
	3901	if [[ $files_for_pes = false ]]
	3902	then
	3903	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3904	else
	3905	mkdir $tmp_data_catalog/${frelout[$i]}
	3906	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3907	fi
	3908
	3909	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3910	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3911	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3912	if [[ $files_for_pes = false ]]
	3913	then
	3914	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3915	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3916	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3917	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3918	else
	3919	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3920	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3921	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3922	fi
	3923
[164]	3924	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3925	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3926	file_saved=true
	3927
	3928	elif [[ $archive_system = ut ]]
	3929	then
	3930	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3931	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3932	# GELEGT WERDEN
	3933	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3934	chmod g+rx $tmp_data_catalog
	3935	if [[ $files_for_pes = false ]]
	3936	then
	3937	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3938	else
	3939	mkdir $tmp_data_catalog/${frelout[$i]}
	3940	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3941	fi
	3942
	3943	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3944	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3945	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3946	if [[ $files_for_pes = false ]]
	3947	then
	3948	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3949	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3950	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3951	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3952	else
	3953	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3954	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3955	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3956	fi
	3957
[82]	3958	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3959	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3960	file_saved=true
	3961
	3962	else
	3963	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	3964	archive_save=false
	3965	fi
	3966	if [[ $file_saved = true ]]
	3967	then
	3968	if [[ $files_for_pes = false ]]
	3969	then
	3970	cat /dev/null > ${pathout[$i]}
	3971	else
	3972	mkdir -p ${pathout[$i]}
	3973	fi
	3974	fi
	3975	fi
	3976
	3977	# APPEND AUF LOKALER MASCHINE
	3978	if [[ "${actionout[$i]}" = "a" ]]
	3979	then
	3980	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	3981	cat ${localout[$i]} >> ${pathout[$i]}
	3982	fi
	3983
	3984	# KOPIEREN AUF LOKALER MASCHINE
	3985	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	3986	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	3987	then
	3988
	3989	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	3990	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	3991	then
	3992	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	3993	if [[ $link_local_output = true ]]
	3994	then
	3995	printf " using ln -f\n"
	3996	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3997	fi
	3998	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	3999	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	4000	then
	4001	if [[ $link_local_output = true ]]
	4002	then
	4003	printf " ln failed, using cp...\n"
	4004	fi
	4005	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4006	fi
[1]	4007	else
	4008	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	4009	if [[ $link_local_output = true ]]
	4010	then
	4011	printf " using ln -f\n"
	4012	ln -f ${localout[$i]} ${pathout[$i]}
	4013	fi
	4014	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4015	if [[ ! -f "${pathout[$i]}" ]]
	4016	then
	4017	if [[ $link_local_output = true ]]
	4018	then
	4019	printf " ln failed, using cp...\n"
	4020	fi
	4021	cp ${localout[$i]} ${pathout[$i]}
	4022	fi
[1]	4023	fi
	4024
	4025	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	4026	then
	4027
	4028	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	4029	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	4030	# WIRD DANN KOPIERT
	4031	# PER MOVE UMBENANNT WERDEN
	4032	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	4033	if [[ $link_local_output = true ]]
	4034	then
	4035	printf " using ln -f\n"
	4036	mkdir ${pathout[$i]}
	4037	cd ${localout[$i]}
	4038	for file in $(ls *)
	4039	do
	4040	ln -f $file ${pathout[$i]}
	4041	done
	4042	cd $TEMPDIR
	4043	fi
	4044	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	4045	if [[ ! -f "${pathout[$i]}/_0000" ]]
	4046	then
	4047	if [[ $link_local_output = true ]]
	4048	then
	4049	printf " ln failed for .../_0000, using cp...\n"
	4050	fi
	4051	cp -r ${localout[$i]} ${pathout[$i]}
	4052	fi
[1]	4053
	4054	fi
	4055	fi
	4056	done
	4057	if (( i != 0 ))
	4058	then
	4059	if [[ $transfer_problems = true ]]
	4060	then
	4061	printf "\n$striche\n *** OUTPUT-files saved"
	4062	printf "\n +++ WARNING: some data transfers failed! \n"
	4063	else
	4064	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4065	fi
	4066	fi
	4067
	4068
	4069	# EVENTUELL FOLGEJOB STARTEN
	4070	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4071	if [[ -f CONTINUE_RUN ]]
	4072	then
	4073
	4074	if [[ $archive_save = true ]]
	4075	then
	4076
	4077	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4078	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4079	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4080	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4081	# HANDEN
	4082	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4083	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4084	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4085	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4086	then
	4087	mc=`echo $mc \| sed 's/#/f/g'`
	4088	fi
	4089
	4090
	4091	# JOB STARTEN
	4092	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4093	echo " $mc"
	4094	printf "\n$striche\n"
	4095	if [[ $localhost != $fromhost ]]
	4096	then
	4097
[204]	4098	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
[1]	4099	then
	4100	echo "*** ssh will be used to initiate restart-runs!"
	4101	echo " return_addres=\"$return_addres\" "
	4102	echo " return_username=\"$return_username\" "
	4103	if [[ $return_addres = 172.20.25.41 ]]
	4104	then
	4105	# WORKAROUND AUF SCIROCCO AM TIT
[374]	4106	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
	4107	elif [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
	4108	then
	4109	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4110	else
[33]	4111	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4112	fi
	4113	else
	4114	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4115	locat=restart; exit
	4116	fi
	4117
	4118	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4119	# DER AKTUELLE JOB ENDET
[399]	4120	if [[ $queue = special1q ]]
	4121	then
	4122	sleep 120
	4123	else
	4124	sleep 30
	4125	fi
[1]	4126
	4127	else
	4128
	4129	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4130	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4131	cd $LOCAL_PWD
[108]	4132	if [[ $localhost = lcfimm ]]
	4133	then
	4134	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4135	else
	4136	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4137	fi
[1]	4138	cd - > /dev/null
	4139	fi
	4140	printf "\n$striche\n *** restart-run initiated \n"
	4141
	4142
	4143	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4144	# GEHOLT WORDEN SIND, LOESCHEN
	4145	(( i = 0 ))
	4146	while (( i < iin ))
	4147	do
	4148	(( i = i + 1 ))
	4149	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4150	then
	4151	rm -r $tmp_data_catalog/${frelin[$i]}
	4152	fi
	4153	done
	4154
	4155	else
	4156
	4157	printf "\n +++ no restart-run possible, since errors occured"
	4158	printf "\n during the archive process"
	4159	fi
	4160
	4161	fi
	4162
	4163
	4164
	4165	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4166	if [[ "$email_notification" != "none" ]]
[1]	4167	then
	4168
	4169	if [[ $localhost != $fromhost ]]
	4170	then
	4171	if [[ -f CONTINUE_RUN ]]
	4172	then
	4173	echo "PALM restart run necessary" > email_text
	4174	echo "description header of actual run:" >> email_text
	4175	cat CONTINUE_RUN >> email_text
	4176	echo "mrun-command to restart:" >> email_text
	4177	echo "$mc" >> email_text
	4178	else
	4179	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4180	fi
	4181	mail $email_notification < email_text
	4182	printf "\n *** email notification sent to \"$email_notification\" "
	4183	fi
	4184	fi
	4185
	4186
	4187
	4188	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4189	cd $HOME
	4190	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4191
	4192	else
	4193
	4194
	4195	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4196	# CHENDE AKTIONEN DURCHGEFUEHRT
	4197
	4198	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[82]	4199	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	4200	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4201	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4202	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4203	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4204	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4205	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4206	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4207	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4208	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4209	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4210	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4211	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4212	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4213	if [[ $use_openmp = true ]]
	4214	then
	4215	mrun_com=${mrun_com}" -O"
	4216	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
	4217	else
	4218	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
	4219	fi
[397]	4220	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
[1]	4221	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4222	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4223	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4224	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4225	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4226	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[1]	4227	if [[ $do_remote = true ]]
	4228	then
	4229	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4230	fi
	4231
	4232
	4233	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4234	jobfile=jobfile.$RANDOM
	4235
	4236
	4237	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4238	echo "mkdir $TEMPDIR" >> $jobfile
	4239	echo "cd $TEMPDIR" >> $jobfile
	4240
	4241
	4242	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4243	if [[ $do_trace = true ]]
	4244	then
	4245	echo "set -x" >> $jobfile
	4246	else
	4247	echo "set +vx" >> $jobfile
	4248	fi
	4249
	4250
[191]	4251	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4252	# DATEI FUER DEN JOB
	4253	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
[1]	4254	then
	4255
[191]	4256	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4257	# KOPIEREN
	4258	if [[ $restart_run != true ]]
	4259	then
	4260	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4261	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4262	fi
[1]	4263
[191]	4264	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[193]	4265	echo "set -x" >> $jobfile
	4266	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4267	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4268
[193]	4269	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4270	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4271	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4272	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4273	echo "execute_mrun=true" >> $jobfile
	4274	echo " " >> $jobfile
	4275
[191]	4276	else
	4277
	4278	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4279	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4280	if [[ $do_compile = true ]]
	4281	then
	4282
	4283	source_catalog=SOURCES_FOR_RUN_$fname
	4284
	4285	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4286	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4287	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4288	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4289	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4290	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4291
	4292	for filename in $source_list
	4293	do
	4294	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4295	echo "cat > $filename << \"%END%\"" >> $jobfile
	4296	cat $source_catalog/$filename >> $jobfile
	4297	echo " " >> $jobfile
	4298	echo "%END%" >> $jobfile
	4299	echo " " >> $jobfile
	4300	done
	4301
[1]	4302	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4303	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4304	cat $source_catalog/Makefile >> $jobfile
[1]	4305	echo " " >> $jobfile
	4306	echo "%END%" >> $jobfile
	4307	echo " " >> $jobfile
	4308
[191]	4309	echo "cd - > /dev/null" >> $jobfile
[1]	4310
[191]	4311	fi
[1]	4312
	4313
[191]	4314	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4315	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4316	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4317	cat $config_file >> $jobfile
	4318	echo "%END%" >> $jobfile
	4319	echo " " >> $jobfile
[1]	4320
	4321
[191]	4322	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4323	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4324	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4325	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4326	echo "%END%" >> $jobfile
	4327	if [[ $host = lctit ]]
	4328	then
	4329	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
	4330	echo "mv mrun_new $mrun_script_name" >> $jobfile
	4331	fi
	4332	echo "chmod u+x $mrun_script_name" >> $jobfile
	4333	echo "execute_mrun=true" >> $jobfile
	4334	echo " " >> $jobfile
[1]	4335
	4336	fi
	4337
[191]	4338
[1]	4339	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4340	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4341	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4342	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4343	if [[ $do_remote = true ]]
	4344	then
	4345	(( i = 0 ))
	4346	while (( i < iin ))
	4347	do
	4348	(( i = i + 1 ))
	4349	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4350	if [[ "${transin[$i]}" = job ]]
	4351	then
	4352	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4353	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4354	echo " " >> $jobfile
	4355	echo "%END%" >> $jobfile
	4356	else
[82]	4357	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4358	fi
	4359
	4360	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4361	echo "if [[ \$? = 1 ]]" >> $jobfile
	4362	echo "then" >> $jobfile
	4363	echo " echo \" \" " >> $jobfile
	4364	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4365	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4366	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4367	echo " execute_mrun=false" >> $jobfile
	4368	echo "fi" >> $jobfile
	4369	done
	4370	fi
	4371
	4372	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4373	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4374	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4375	echo "export LOCAL_PWD" >> $jobfile
	4376
	4377	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4378	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4379	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4380
[66]	4381	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4382	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4383	then
	4384	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4385	fi
[1]	4386
	4387	# MRUN AUF ZIELRECHNER AUFRUFEN
	4388	echo "set -x" >> $jobfile
	4389	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4390
	4391	echo 'ls -al; echo `pwd`' >> $jobfile
	4392	echo "cd \$HOME" >> $jobfile
	4393	echo "rm -rf $TEMPDIR" >> $jobfile
	4394
	4395
	4396
	4397
	4398	# JOB PER SUBJOB STARTEN
	4399	if [[ $silent = false ]]
	4400	then
	4401	printf "\n "
	4402	else
	4403	printf "\n\n"
	4404	fi
	4405
[352]	4406	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
[1]	4407	rm -rf $jobfile
	4408
	4409
	4410	fi # ENDE REMOTE-TEIL
	4411
	4412
	4413
	4414	# ENDE DER PROZEDUR

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