Home

Context Navigation

source: palm/trunk/SCRIPTS/mrun @ 1234

Last change on this file since 1234 was 1230, checked in by raasch, 12 years ago
last commit documented
Property svn:keywords set to `Id Rev`
File size: 184.7 KB

Rev	Line
[1103]	1	#!/bin/ksh
[1046]	2
[1059]	3	# mrun - script for running PALM jobs
	4
[1046]	5	#--------------------------------------------------------------------------------#
	6	# This file is part of PALM.
	7	#
	8	# PALM is free software: you can redistribute it and/or modify it under the terms
	9	# of the GNU General Public License as published by the Free Software Foundation,
	10	# either version 3 of the License, or (at your option) any later version.
	11	#
	12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	15	#
	16	# You should have received a copy of the GNU General Public License along with
	17	# PALM. If not, see <http://www.gnu.org/licenses/>.
	18	#
	19	# Copyright 1997-2012 Leibniz University Hannover
	20	#--------------------------------------------------------------------------------#
	21	#
	22	# Current revisions:
[1090]	23	# ------------------
[1230]	24	#
[1200]	25	#
	26	# Former revisions:
	27	# -----------------
	28	# $Id: mrun 1230 2013-09-20 06:56:52Z kanani $
	29	#
[1230]	30	# 1229 2013-09-20 06:55:19Z raasch
	31	# further adjustments for lccrayb
	32	#
[1225]	33	# 1224 2013-09-16 07:27:23Z raasch
	34	# first adjustments for lccrayb
	35	#
[1211]	36	# 1210 2013-08-14 10:58:20Z raasch
	37	# fftw support added
	38	#
[1203]	39	# 1201 2013-07-10 16:17:59Z witha
	40	# adjustments for Forwind cluster (lcflow)
	41	#
[1200]	42	# 1199 2013-07-05 14:52:22Z raasch
[1199]	43	# adjustments for CSC Helsinki (lccrayf),
	44	# executables for batch jobs can be created in advance, in order to avoid calling
	45	# the compiler within the batch job (only works if batch jobs are submitted on
	46	# local host)
[1104]	47	#
[1191]	48	# 1190 2013-06-25 09:39:21Z heinze
	49	# enable use of automatic restarts for ibmh
[1185]	50	# use of cluster/express queue enabled (ibmh)
[1104]	51	#
[1125]	52	# 1124 2013-04-09 15:46:52Z raasch
	53	# variable "memory" is exported via typeset option -x, because otherwise an unknown
	54	# side effect may lead to data loss while getopts is reading the script-option arguments
	55	#
[1123]	56	# 1122 2013-04-09 08:37:16Z heinze
	57	# Bugfix: change type of variable last_char
	58	#
[1121]	59	# 1119 2013-04-05 15:11:19Z raasch
	60	# Bugfix for setting -T option for subjob
	61	#
[1109]	62	# 1108 2013-03-05 07:03:32Z raasch
	63	# bugfix for coupled runs on lckyut/lckyuh
	64	#
[1107]	65	# 1106 2013-03-04 05:31:38Z raasch
	66	# --stdin argument for mpiexec on lckyuh
	67	# -y and -Y settings output to header
	68	#
[1104]	69	# 1103 2013-02-20 02:15:53Z raasch
[1103]	70	# default script runs again under ksh, because of unsolved problems with read
	71	# from stdin: when bash script is called from a ksh, message "read error: 0:
	72	# Resource temporarily unavailable" appears and script does not stop,
	73	# further bash compatibility adjustments,
	74	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
	75	# on lckyuh, but mrun does not terminate and issues a warning instead
[1046]	76	#
[1102]	77	# 1101 2013-02-17 10:20:21Z raasch
	78	# script now running under bash instead of ksh, which required small adjustments
	79	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
	80	# read from stdin),
	81	# cross compilername on lckyuh compute nodes replaced by real compiler name
	82	#
[1100]	83	# 1099 2013-02-10 01:47:43Z raasch
	84	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
	85	# and for Forwind cluster (lcflow)
	86	# small further adjustments for lckyut
	87	#
[1096]	88	# 1094 2013-02-03 01:52:12Z raasch
	89	# explicit ssh/scp port can be set in config file with environment variable
	90	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
	91	# decalpha parts (yonsei) removed
	92	#
[1091]	93	# 2013-02-02 07:06:13Z raasch
[1099]	94	# adjustments for Kyushu-University computing center (lckyut - tatara)
[1091]	95	#
[1084]	96	# 1083 2013-01-04 10:22:09Z maronga
	97	# bugfix in parameter file check (read %cpp_options was missing)
	98	#
[1070]	99	# 1069 2012-11-28 16:18:43Z maronga
	100	# bugfix: coupling mode was always set to mpi2, typos removed
	101	#
[1059]	102	# 1058 2012-11-21 07:00:35Z raasch
	103	# Intel inspector (inspxe) is given the number of PEs instead of the number of
	104	# nodes
	105	#
[1047]	106	# 1046 2012-11-09 14:38:45Z maronga
	107	# code put under GPL (PALM 3.9)
	108	#
[1090]	109	# 21/03/94 - Siggi - first version finished
	110	# 03/03/94 - Siggi - script development started
	111	#
[1059]	112	#--------------------------------------------------------------------------------#
[1090]	113	# mrun - script for running PALM jobs
	114	#--------------------------------------------------------------------------------#
[1]	115
[1047]	116
[1]	117
	118	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	119
	120	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	121	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	122	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	123
	124	AddFilenames=""
	125	additional_conditions=""
	126	add_source_path=""
	127	afname=""
	128	archive_save=true
	129	archive_system=none
[807]	130	check_namelist_files=true
[920]	131	combine_plot_fields=true
[1]	132	compiler_name=""
	133	cond1=""
	134	cond2=""
	135	config_file=.mrun.config
[206]	136	coupled_dist=""
	137	coupled_mode="mpi1"
[1]	138	cpp_opts=""
[82]	139	cpp_options=""
[1]	140	cpumax=0
	141	cpurest=0
[1199]	142	create_executable_for_batch=false
[1]	143	delete_temporary_catalog=true
	144	do_batch=false
	145	do_compile=true
	146	do_remote=false
	147	do_stagein=true
	148	do_stageout=true
	149	do_trace=false
[352]	150	email_notification="none"
[1]	151	exclude=""
	152	executable=""
	153	execution_error=false
[1210]	154	fftw_inc=""
	155	fftw_lib=""
	156	fftw_support=false
[67]	157	fimm=false
[1]	158	fname=test
	159	fromhost=""
[78]	160	global_revision=""
[122]	161	group_number=none
[1]	162	host=""
	163	host_file=""
	164	hp=""
	165	ignore_archive_error=false
	166	input_list=""
	167	interpreted_config_file=""
[164]	168	job_catalog="~/job_queue"
[1]	169	job_on_file=""
	170	keep_data_from_previous_run=false
[183]	171	link_local_input=false
[149]	172	link_local_output=false
[1]	173	localhost_realname=$(hostname)
	174	local_compile=false
[260]	175	local_dvrserver_running=.FALSE.
[1]	176	locat=normal
	177	mainprog=""
	178	makefile=""
[759]	179	max_par_io_str=""
[1]	180	mc=$0
	181	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	182	do
	183	mc=`echo $mc \| cut -f2- -d"/"`
	184	done
[493]	185	module_calls=""
[1]	186	mrun_script_name=$mc
[82]	187	netcdf_inc=""
	188	netcdf_lib=""
[1]	189	netcdf_support=false
	190	node_usage=default
	191	numprocs=""
[206]	192	numprocs_atmos=0
	193	numprocs_ocean=0
[1]	194	OOPT=""
	195	openmp=false
	196	output_list=""
	197	package_list=""
	198	punkte="..........................................................."
	199	queue=none
	200	read_from_config=""
[5]	201	restart_run=false
[622]	202	if [[ `hostname` = rte10 ]]
[1]	203	then
[1103]	204	return_addres=133.5.185.60
	205	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
[693]	206	elif [[ `hostname` = climate0 ]]
	207	then
[1103]	208	return_addres=165.132.26.68
	209	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
[1021]	210	elif [[ `hostname` = urban00 ]]
	211	then
[1103]	212	return_addres=147.46.30.151
	213	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
[622]	214	else
	215	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	216	fi
	217	return_password=""
	218	return_username=$LOGNAME
	219	remotecall=false
	220	remote_username=""
[102]	221	run_coupled_model=false
[1]	222	run_mode=""
	223	scirocco=false
[397]	224	store_on_archive_system=false
[1]	225	striche=" ----------------------------------------------------------------------------"
	226	silent=false
	227	source_list=""
	228	source_path=SOURCE
	229	tasks_per_node=""
	230	threads_per_task=1
	231	tmpcreate=false
	232	tmp_data_catalog=""
	233	transfer_problems=false
	234	usern=$LOGNAME
[377]	235	use_openmp=false
[1101]	236	version="MRUN 2.0 Rev$Rev: 1230 $"
[1]	237	working_directory=`pwd`
	238	TOPT=""
	239	XOPT=""
	240	zeit=$( date \| cut -c 12-19 )
	241
[1124]	242	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
	243	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
	244	# effect may cause data loss when getopts is reading the
	245	# script-option arguments
[1122]	246	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes sekunden tp1
[1]	247
	248
	249
	250
	251	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	252	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	253
	254	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	255	# EXPORTIERT WERDEN
	256	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[1124]	257	export group_number input_list numprocs output_list queue run_mode
[1]	258
	259
	260
	261	# FEHLERBEHANDLUNG
	262	# BEI EXIT:
[83]	263	trap 'rm -rf $working_directory/tmp_mrun
[69]	264	if [[ $locat != localhost ]]
[1]	265	then
[22]	266	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	267	# then
	268	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	269	#MRUN-calls on $localhost
	270	#
	271	#date and time user localhost remotehost termination mrun-command
	272	#--------------------------------------------------------------------------------------------------------------------
	273	#%STATEND%
	274	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	275	# fi
	276	#
	277	# # EINTRAG IN DIE STATISTIK-DATEI
[1101]	278	# string1=`date` #-L35
	279	# string2=$usern #-L12
	280	# string3=$localhost_realname #-L12
	281	# string4=$host #-L12
	282	# string5=$locat #-L12
[22]	283	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	284	# then
	285	# if [[ $do_batch = true ]]
	286	# then
	287	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	288	# else
	289	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	290	# fi
	291	# fi
[69]	292	echo " " > /dev/null
[1]	293	fi
	294
	295	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	296	then
	297
	298	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	299	(( i = 0 ))
	300	while (( i < iec ))
	301	do
	302	(( i = i + 1 ))
	303	printf "\n *** Execution of ERROR-command:\n"
	304	printf " >>> ${err_command[$i]}\n"
	305	eval ${err_command[$i]}
	306	done
[1101]	307	if [[ -n $interpreted_config_file ]]
	308	then
[1]	309	rm -rf $interpreted_config_file
	310	fi
[1101]	311	if [[ -n .mrun_environment ]]
	312	then
[71]	313	rm -rf .mrun_environment
	314	fi
[1]	315	if [[ $tmpcreate = true ]]
	316	then
	317	printf "\n *** Contents of \"$TEMPDIR\":\n"
	318	ls -al; cd
	319	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	320	fi
[260]	321	if [[ "$dvrserver_id" != "" ]]
	322	then
	323	echo "+++ killing dvrserver_id=$dvrserver_id"
	324	kill $dvrserver_id
	325	fi
[1]	326	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	327	then
	328	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	329	fi
	330	printf "\n\n+++ MRUN killed \n\n"
	331	elif [[ $locat != control_c ]]
	332	then
	333	printf "\n\n --> all actions finished\n\n"
	334	printf " Bye, bye $usern !!\n\n"
	335	fi' exit
	336
	337
	338	# BEI TERMINAL-BREAK:
[83]	339	trap 'rm -rf $working_directory/tmp_mrun
[807]	340	rm -rf $working_directory/tmp_check_namelist_files
[69]	341	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	342	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	343	then
	344	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	345	fi
[260]	346	if [[ "$dvrserver_id" != "" ]]
	347	then
	348	echo "+++ killing dvrserver_id=$dvrserver_id"
	349	kill $dvrserver_id
	350	fi
[1]	351	printf "\n+++ MRUN killed by \"^C\" \n\n"
	352	locat=control_c
	353	exit
	354	' 2
	355
	356
[22]	357	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	358	# BEEN SET
	359	if [[ "$PALM_BIN" = "" ]]
	360	then
	361	printf "\n +++ environment variable PALM_BIN has not been set"
	362	printf "\n please set it to the directory where the PALM scripts are located"
	363	locat=palm_bin; exit
	364	fi
[180]	365	export PATH=$PALM_BIN:$PATH
[22]	366
	367
[1]	368
	369	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	370	# FUER FOLGEJOBS BENOETIGT WIRD
[920]	371	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
[1]	372	do
	373	case $option in
	374	(a) afname=$OPTARG;;
[397]	375	(A) store_on_archive_system=true; mc="$mc -A";;
[1]	376	(b) do_batch=true; mc="$mc -b";;
	377	(B) delete_temporary_catalog=false; mc="$mc -B";;
	378	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	379	(C) restart_run=true; mc="$mc -C";;
[1]	380	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	381	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	382	(F) job_on_file="-D"; mc="$mc -F";;
[122]	383	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	384	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	385	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	386	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	387	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	388	(I) ignore_archive_error=true; mc="$mc -I";;
	389	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	390	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	391	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	392	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	393	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	394	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
[622]	395	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
[1]	396	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	397	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	398	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	399	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	400	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	401	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	402	(S) read_from_config=false; mc="$mc -S";;
	403	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
[759]	404	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
[1]	405	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	406	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	407	(v) silent=true; mc="$mc -v";;
[759]	408	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
[1]	409	(x) do_trace=true;set -x; mc="$mc -x";;
	410	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	411	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	412	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[807]	413	(z) check_namelist_files=false; mc="$mc -z";;
[920]	414	(Z) combine_plot_fields=false; mc="$mc -Z";;
[1]	415	(\?) printf "\n +++ unknown option $OPTARG \n"
	416	printf "\n --> type \"$0 ?\" for available options \n"
	417	locat=parameter;exit;;
	418	esac
	419	done
	420
	421
	422	# EVTL. POSITIONSPARAMETER EINLESEN
	423	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
[1101]	424	(( to_shift = $OPTIND - 1 ))
	425	shift $to_shift
[1]	426
	427	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	428	if [[ "$1" = "?" ]]
	429	then
	430	(printf "\n *** mrun can be called as follows:\n"
[920]	431	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
[1]	432	printf "\n Description of available options:\n"
	433	printf "\n Option Description Default-Value"
	434	printf "\n -a base name of input files equiv. -d"
[400]	435	printf "\n -A archiving when using file-attribute fl"
[1]	436	printf "\n -b batch-job on local machine ---"
	437	printf "\n -B do not delete temporary directory at end ---"
	438	printf "\n -c configuration file .mrun.config"
	439	printf "\n -d base name of files attached to program test"
	440	printf "\n -D preprocessor(cpp)-directives \"\" "
	441	printf "\n -F create remote job file only ---"
	442	printf "\n -h execution host $localhost_realname"
	443	printf "\n -i INPUT control list \"\" "
	444	printf "\n -I archiving errors of previous batch-jobs"
	445	printf "\n will be ignored"
	446	printf "\n -k keep data from previous run"
	447	printf "\n -K additional conditions for controling"
	448	printf "\n usage of conditional code and"
	449	printf "\n env-variables in configuration file \"\" "
	450	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	451	printf "\n -M Makefile name Makefile"
	452	printf "\n -n node usage (shared/not_shared) depending on -h"
	453	printf "\n -o OUTPUT control list \"\" "
	454	printf "\n -O use OpenMP ---"
	455	printf "\n -p software package list \"\" "
	456	printf "\n -q queue \"$queue\" "
	457	printf "\n -r run control list (combines -i -o) \"\" "
	458	printf "\n -s filenames of routines to be compiled \"\" "
	459	printf "\n must end with .f, .f90, .F, or .c !"
	460	printf "\n use \"..\" for more than one file and wildcards"
[837]	461	printf "\n -s LM compiles all locally modified files"
[1]	462	printf "\n -S config file interpreted by shellscript ---"
	463	printf "\n -t allowed cpu-time in seconds (batch) 0"
	464	printf "\n -T tasks per node depending on -h"
	465	printf "\n -u username on remote machine \"\" "
	466	printf "\n -v no prompt for confirmation ---"
[759]	467	printf "\n -w maximum parallel io streams as given by -X"
[1]	468	printf "\n -x tracing of mrun for debug purposes ---"
	469	printf "\n -X # of processors (on parallel machines) 1"
[291]	470	printf "\n -y add appendix \"_O\" to all local output"
	471	printf "\n files (ocean precursor runs followed by"
	472	printf "\n coupled atmosphere-ocean runs) ---"
[206]	473	printf "\n -Y run coupled model, \"#1 #2\" with"
	474	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[920]	475	printf "\n -z disable a priori parameter file check ---"
	476	printf "\n -Z skip combine_plot_fields at the end of "
	477	printf "\n the simulation ---"
[1]	478	printf "\n "
	479	printf "\n Possible values of positional parameter <modus>:"
	480	printf "\n \"?\" - this outline \n\n") \| more
	481	exit
	482	elif [[ "$1" != "" ]]
	483	then
	484	printf "\n +++ positional parameter $1 unknown \n"
	485	locat=parameter; exit
	486	fi
	487
	488
	489
	490	# KURZE STARTMELDUNG
	491	printf "\n*** $version "
	492	printf "\n will be executed. Please wait ..."
	493
	494
[82]	495
	496	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	497	if [[ ! -f $config_file ]]
	498	then
	499	printf "\n\n +++ configuration file: "
	500	printf "\n $config_file"
	501	printf "\n does not exist"
	502	locat=connect; exit
	503	fi
	504
	505
	506	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	507	line=""
	508	grep "%host_identifier" $config_file > tmp_mrun
	509	while read line
	510	do
[206]	511	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	512	then
	513	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	514	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	515	if [[ $localhost_realname = $HOSTNAME ]]
[82]	516	then
	517	localhost=$host_identifier
	518	break
	519	fi
	520	fi
	521	done < tmp_mrun
	522
	523	if [[ "$localhost" = "" ]]
	524	then
	525	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	526	printf "\n for local host \"$localhost_realname\"."
	527	printf "\n Please add line"
	528	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	529	printf "\n to the configuration file."
	530	locat=localhost; exit
	531	fi
	532
	533
	534	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	535	case $localhost_realname in
[397]	536	(r1\|r2\|h01\|b01) archive_system=tivoli;;
[82]	537	(cs*) archive_system=ut;;
	538	(fimm.bccs.uib.no) fimm=true;;
	539	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	540	(scirocco) scirocco=true;;
	541	esac
	542
	543
	544
[1]	545	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	546	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	547	[[ "$afname" = "" ]] && afname=$fname
	548
	549
	550	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	551	if [[ "$run_mode" != "" ]]
	552	then
	553	input_list="$input_list $run_mode"
	554	output_list="$output_list $run_mode"
	555	fi
	556
	557
	558	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	559	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	560	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	561	# STARTET)
	562	if [[ "$fromhost" = "" ]]
	563	then
	564	fromhost=$localhost
	565	fi
	566
	567
	568	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	569	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	570	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	571	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	572	if [[ -n $host && "$host" != $localhost ]]
	573	then
	574	do_batch=true
	575	do_remote=true
	576	case $host in
[1224]	577	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
[1]	578	(*) printf "\n"
[83]	579	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	580	printf "\n is not available"
[1]	581	locat=nqs; (( iec = 0 )); exit;;
	582	esac
	583	else
	584	host=$localhost
	585	fi
	586
	587
	588	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	589	if [[ -n $additional_conditions ]]
	590	then
[69]	591	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	592	cond1=`echo $additional_conditions \| cut -d" " -f1`
	593	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	594	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	595	if [[ -n $dummy ]]
	596	then
	597	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	598	locat=options; exit
	599	fi
[503]	600	block=_$cond1
	601	[[ -n $cond2 ]] && block=${block}_$cond2
[1]	602	fi
	603
	604
[206]	605	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	606	if [[ $run_coupled_model = true ]]
	607	then
	608
	609	if [[ -n $coupled_dist ]]
	610	then
	611
	612	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	613	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	614
	615	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	616	then
	617
	618	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	619	printf "\n PEs (total) : $numprocs"
	620	printf "\n PEs (atmosphere): $numprocs_atmos"
	621	printf "\n PEs (ocean) : $numprocs_ocean"
	622	locat=coupling; exit
	623
	624	fi
	625
	626	else
	627
	628	(( numprocs_ocean = $numprocs / 2 ))
	629	(( numprocs_atmos = $numprocs / 2 ))
	630
	631	fi
	632	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	633
	634	# GET coupled_mode FROM THE CONFIG FILE
	635	line=""
	636	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	637	while read line
	638	do
[1069]	639	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
[206]	640	then
	641	coupled_mode="mpi2"
	642	fi
	643	done < tmp_mrun
	644
	645	fi
	646
	647
[1]	648	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	649	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	650	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	651	then
	652	if [[ $ignore_archive_error = false ]]
	653	then
	654	printf "\n +++ data archiving of previous run failed"
	655	printf "\n see directory \~/job_queue on remote machine"
	656	locat=archive; exit
	657	else
	658	printf "\n +++ warning: data archiving in a previous run failed"
	659	printf "\n MRUN continues, trying to get backup copy"
	660	fi
	661	fi
	662
	663
[1099]	664	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	665	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	666	mrun_memory=$memory
	667	mrun_group_number=$group_number
	668	mrun_cpumax=$cpumax
	669	mrun_numprocs=$numprocs
[1]	670
[1099]	671
[1]	672	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	673	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	674	if [[ "$read_from_config" = false ]]
	675	then
	676
	677	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	678	while read zeile
	679	do
	680	[[ $silent = false ]] && printf "."
	681
	682
	683	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	684	# ERSETZEN
	685	eval zeile=\"$zeile\"
	686
	687
	688	# INTERPRETATION DER ZEILE
[21]	689	if [[ "$(echo $zeile)" = "" ]]
[1]	690	then
[21]	691	# LEERZEILE, KEINE AKTION
	692	continue
[1]	693
[21]	694	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	695	then
	696
[1]	697	# ZEILE IST KOMMENTARZEILE
	698	true
	699
	700	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	701	then
	702
	703	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	704	zeile=$(echo $zeile \| cut -c2-)
[69]	705	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	706	var=`echo $zeile \| cut -d" " -f1`
	707	value=`echo $zeile \| cut -d" " -s -f2`
	708	for_host=`echo $zeile \| cut -d" " -s -f3`
	709	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	710	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	711
	712	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	713	then
	714
	715	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	716	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	717	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	718
	719
	720	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	721	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	722	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	723	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	724	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	725	# KONFIGURATIONSDATEI
	726	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	727	then
	728	eval $var=\$value
	729
	730	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	731	if [[ $do_trace = true ]]
	732	then
	733	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	734	fi
	735	fi
	736
	737	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	738	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	739	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	740	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	741	if [[ $var = host ]]
	742	then
	743	if [[ -n $host && "$host" != $localhost ]]
	744	then
	745	do_batch=true
	746	do_remote=true
	747	case $host in
[1224]	748	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
[83]	749	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	750	printf "\n is not available"
[1]	751	locat=nqs; exit;;
	752	esac
	753	else
	754	host=$localhost
	755	fi
	756	fi
	757
	758	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	759	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	760	# DEN PROGRAMMEN BENOETIGT WERDEN
	761	export $var
	762	fi
	763
	764
	765
	766
	767	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	768	then
	769
	770	# ZEILE DEFINIERT ERROR-KOMMANDO
	771	(( iec = iec + 1 ))
	772	zeile=$(echo $zeile \| cut -c4-)
	773	err_command[$iec]="$zeile"
	774
	775	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	776	then
	777
	778	# ZEILE DEFINIERT INPUT-KOMMANDO
	779	(( iic = iic + 1 ))
	780	zeile=$(echo $zeile \| cut -c4-)
	781	in_command[$iic]="$zeile"
	782
	783	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	784	then
	785
	786	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	787	(( ioc = ioc + 1 ))
	788	zeile=$(echo $zeile \| cut -c4-)
	789	out_command[$ioc]="$zeile"
	790
	791	else
	792
	793	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	794	# s2a: in/out - Feld
	795	# s2b: loc - Feld (optional)
	796	# s2c: tr/ar - Feld (optional)
[69]	797	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	798	s1=`echo $zeile \| cut -d" " -f1`
	799	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	800	s2a=$(echo $s2 \| cut -d":" -f1)
	801	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	802	then
	803	s2b=""
	804	s2c=""
	805	else
[69]	806	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	807	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	808	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	809	fi
[69]	810	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	811	s3=`echo $zeile \| cut -d" " -f3`
	812	s4=`echo $zeile \| cut -d" " -s -f4`
	813	s5=`echo $zeile \| cut -d" " -s -f5`
	814	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	815
	816
	817	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	818	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	819	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	820	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	821	# HANDEN SEIN MUSS (D.H. s2b = loc)
	822	IFSALT="$IFS"; IFS="$IFS:"
	823	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	824	then
	825	found=false
	826	for actual in $input_list
	827	do
	828	for formal in $s3
	829	do
	830	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	831	done
	832	done
	833	if [[ $found = true ]]
	834	then
	835	(( iin = iin + 1 ))
	836	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	837	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	838	extin[$iin]=$s6
	839	fi
	840	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	841	then
	842	found=false
	843	for actual in $output_list
	844	do
	845	for formal in $s3
	846	do
	847	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	848	done
	849	done
	850	if [[ $found = true ]]
	851	then
	852	(( iout = iout + 1 ))
	853	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	854	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	855	fi
	856	elif [[ "$s2a" != in && "$s2a" != out ]]
	857	then
	858	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	859	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	860	locat=connect; exit
	861	fi
	862	IFS="$IFSALT"
	863	fi
	864	done < $config_file
	865
	866	else
	867
	868
	869	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	870	[[ $silent = false ]] && printf "..."
	871	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	872	export interpreted_config_file=.icf.$RANDOM
	873
	874
[69]	875
	876	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	877	# VERFUEGUNG STELLEN
	878	cat > .mrun_environment << %%END%%
	879	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	880	config_file = '$config_file', do_remote = '$do_remote',
	881	do_trace = '$do_trace', host = '$host',
	882	input_list = '$input_list', icf = '$interpreted_config_file',
	883	localhost = '$localhost', output_list = '$output_list' /
	884
	885	%%END%%
	886
[251]	887	if [[ $localhost_realname = "sx-fep" ]]
[66]	888	then
[251]	889	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	890	else
[503]	891
	892	if [[ "$host" != $localhost ]]
	893	then
	894
	895	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
	896	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
	897	if [[ $? != 0 ]]
	898	then
	899	printf "\n\n +++ no interpret_config found"
	900	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
	901	locat=interpret_config; exit
	902	fi
	903	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
	904	$interpret_config_executable
	905
	906	else
	907
	908	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
	909	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
	910	then
	911	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
	912	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
	913	locat=interpret_config; exit
	914	else
	915	interpret_config${block}.x
	916	fi
	917
	918	fi
[66]	919	fi
[71]	920	rm .mrun_environment
[1]	921
[71]	922
[1]	923	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	924	chmod u+x $interpreted_config_file
	925	export PATH=$PATH:.
	926	. $interpreted_config_file
[71]	927	rm $interpreted_config_file
[1]	928
[1099]	929	fi
[71]	930
[69]	931
[1099]	932	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
	933	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
	934	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
	935	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	936	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
	937	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
	938	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
[1]	939
	940
	941	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	942	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	943	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	944	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	945	if [[ "$SOURCES_COMPLETE" = "" ]]
	946	then
	947
	948	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	949	# VEREINBART WURDE
	950	source_path=""
	951	line=""
	952	grep "%source_path" $config_file > tmp_mrun
	953	while read line
	954	do
	955	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	956	then
	957	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	958	then
	959	global_source_path=`echo $line \| cut -d" " -f2`
	960	fi
	961	fi
	962	done < tmp_mrun
	963
	964	line=""
	965	found=false
	966	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	967	while read line
	968	do
	969	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	970	then
	971	if [[ $found = true ]]
	972	then
	973	printf "\n\n +++ more than one source path found in configuration file"
	974	printf "\n for local host \"$localhost\" "
	975	locat=source_path; exit
	976	fi
	977	source_path=`echo $line \| cut -d" " -f2`
	978	found=true
	979	fi
	980	done < tmp_mrun
	981	rm tmp_mrun
	982
	983	if [[ "$source_path" = "" ]]
	984	then
	985	if [[ "$global_source_path" != "" ]]
	986	then
	987	source_path=$global_source_path
	988	else
	989	printf "\n\n +++ no source path found in configuration file"
	990	printf "\n for local host \"$localhost\" "
	991	locat=source_path; exit
	992	fi
	993	fi
	994	eval source_path=$source_path
	995
	996	if [[ ! -d $source_path ]]
	997	then
	998	printf "\n\n +++ source path \"$source_path\" on local host"
	999	printf "\n \"$localhost\" does not exist"
	1000	locat=source_path; exit
	1001	fi
	1002
	1003	fi
	1004
	1005
[78]	1006	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	1007	# DURCH OPTION -G MITGETEILT)
[693]	1008	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
[78]	1009	then
	1010	global_revision=`svnversion $source_path 2>/dev/null`
	1011	global_revision="Rev: $global_revision"
	1012	fi
[1]	1013
[78]	1014
[1]	1015	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1016	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1017	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1018	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1019	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1020	if [[ -n $host && "$host" != $localhost ]]
	1021	then
	1022	do_batch=true
	1023	do_remote=true
	1024	case $host in
[1224]	1025	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
[1]	1026	(*) printf "\n"
[83]	1027	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1028	printf "\n is not available"
[1]	1029	locat=nqs; (( iec = 0 )); exit;;
	1030	esac
	1031	else
	1032	host=$localhost
	1033	fi
	1034
	1035
	1036	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1037	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1038	then
	1039
	1040	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1041	if [[ ! -n $numprocs ]]
	1042	then
	1043	printf "\n"
	1044	printf "\n +++ option \"-K parallel\" requires additional specification"
	1045	printf "\n of the number of processors to be used by"
	1046	printf "\n mrun-option \"-X\" or by environment-variable"
	1047	printf "\n \"numprocs\" in the configuration file"
	1048	locat=numprocs; (( iec = 0 )); exit
	1049	fi
	1050
	1051	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1052	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1053	# GESAMTPROZESSORANZAHL IST
[1039]	1054	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
[1]	1055	then
[759]	1056	printf "\n"
	1057	printf "\n +++ option \"-T\" (tasks per node) is missing"
	1058	printf "\n set -T option or define tasks_per_node in the config file"
	1059	locat=tasks_per_node; (( iec = 0 )); exit
	1060	fi
[1039]	1061	if [[ $host != lcflow && $host != lcxt5m ]]
[759]	1062	then
[848]	1063	(( ival = $tasks_per_node ))
	1064	(( pes = numprocs ))
	1065	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1066	# then
	1067	# (( pes = pes - 1 ))
	1068	# fi
	1069	(( ii = pes / ival ))
	1070	if (( pes - ii * ival > 0 ))
	1071	then
	1072	printf "\n"
	1073	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1074	printf "\n divisor of the total number of processors (option \"-X\")"
	1075	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1076	locat=tasks_per_node; (( iec = 0 )); exit
	1077	fi
[1]	1078	fi
	1079
[759]	1080
[1]	1081	# IBMY HAT NUR EINEN KNOTEN
	1082	if [[ $host = ibmy ]]
	1083	then
	1084	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1085	then
	1086	printf "\n"
	1087	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1088	printf "\n total number of processors (option \"-X\")"
	1089	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1090	locat=tasks_per_node; (( iec = 0 )); exit
	1091	fi
	1092	fi
	1093
[377]	1094
	1095	# SETTINGS FOR SUBJOB-COMMAND
[1]	1096	OOPT="-O $threads_per_task"
	1097
	1098	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1099	if [[ "$tasks_per_node" != "" ]]
	1100	then
[1119]	1101	TOPT="-T $tasks_per_node"
[1]	1102	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1103	fi
	1104
	1105	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1106	# SETZEN
	1107	if [[ $node_usage = default ]]
	1108	then
	1109	if [[ $host = ibms ]]
	1110	then
	1111	node_usage=shared
[181]	1112	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1113	then
	1114	node_usage=singlejob
[1]	1115	else
	1116	node_usage=not_shared
	1117	fi
	1118	fi
[181]	1119
[635]	1120	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
[1]	1121	then
	1122	printf "\n"
	1123	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1124	printf "\n \"shared\" or \"not_shared\""
	1125	locat=tasks_per_node; (( iec = 0 )); exit
	1126	fi
	1127
	1128	fi
	1129
	1130	# PRUEFEN, OB HOSTFILE EXISTIERT
	1131	if [[ -n $hostfile ]]
	1132	then
	1133	if [[ ! -f $hostfile ]]
	1134	then
	1135	printf "\n"
	1136	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1137	locat=hostfile; exit
	1138	fi
	1139	fi
	1140
	1141	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1142	if [[ $host = ibmy && $do_remote = false ]]
	1143	then
	1144	if [[ ! -f $HOME/.rhosts ]]
	1145	then
	1146	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1147	printf "\n\n *** file:"
	1148	printf "\n $HOME/.rhosts"
	1149	printf "\n was created\n"
	1150	fi
	1151	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1152	then
	1153	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1154	printf "\n\n *** file:"
	1155	printf "\n $HOME/.rhosts"
	1156	printf "\n was extended by the name of the current host\n"
	1157	fi
	1158	fi
	1159
	1160
[759]	1161	# Set default value for the maximum number of parallel io streams
	1162	if [[ "$maximum_parallel_io_streams" = "" ]]
	1163	then
	1164	maximum_parallel_io_streams=$numprocs
	1165	fi
[1]	1166
[759]	1167
[1094]	1168	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
	1169	if [[ "$scp_port" != "" ]]
	1170	then
	1171	PORTOPT="-P $scp_port"
	1172	SSH_PORTOPT="-p $scp_port"
	1173	fi
	1174
	1175
[1]	1176	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1177	if [[ $queue = none ]]
	1178	then
	1179	case $host in
[1184]	1180	(ibmh) queue=cluster;;
[693]	1181	(ibmkisti) queue=class.32plus;;
[1]	1182	(ibmy) queue=parallel;;
[1040]	1183	(lckiaps) queue=normal;;
[440]	1184	(lckyoto) queue=ph;;
[1099]	1185	(lckyuh) queue=fx-single;;
	1186	(lckyut) queue=cx-single;;
[821]	1187	(lcsgib) queue=testq;;
	1188	(lcsgih) queue=testq;;
[635]	1189	(lctit) queue=S;;
[1]	1190	(nech) queue=none;;
[253]	1191	(necriam) queue=SP;;
[1]	1192	(unics) queue=unics;;
	1193	esac
	1194	fi
	1195
	1196
	1197	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1198	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1199	# ERMITTELN
	1200	(( i = 0 ))
	1201	while (( i < iin ))
	1202	do
	1203	(( i = i + 1 ))
	1204	(( maxcycle = 0 ))
	1205
	1206	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1207	if [[ "${actionin[$i]}" = di ]]
	1208	then
	1209	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1210	# REM-MASCHINE AUSWERTEN
	1211	eval filename=${pathin[$i]}/${endin[$i]}
	1212	else
	1213	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1214	# REM-MASCHINE AUSWERTEN
	1215	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1216	fi
[892]	1217	eval pathname=${pathin[$i]}
[1]	1218
[920]	1219	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
	1220	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
	1221	then
	1222	filename_input=$filename
	1223	fi
[892]	1224
[1]	1225	# PRUEFEN AUF VORHANDENSEIN
	1226	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
[746]	1227	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
[1]	1228	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1229	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1230	then
	1231	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1232	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1233	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1234	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1235	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1236	if [[ "${transin[$i]}" != "locopt" ]]
	1237	then
	1238	printf "\n\n +++ INPUT-file: "
	1239	if [[ "${extin[$i]}" = "" ]]
	1240	then
	1241	printf "\n $filename"
	1242	else
	1243	printf "\n $filename.${extin[$i]}"
	1244	fi
	1245	printf "\n does not exist\n"
	1246	locat=input; exit
	1247	else
	1248	transin[$i]="unavailable"
	1249	fi
	1250	else
	1251
	1252	# ZYKLUSNUMMER FESTSTELLEN
	1253	ls -1 -d $filename > filelist 2>/dev/null
	1254	ls -1 -d $filename.* >> filelist 2>/dev/null
	1255	while read zeile
	1256	do
[1101]	1257	cycle=$(echo $zeile \| cut -f2 -d".")
[1]	1258	if [[ "$cycle" = "$zeile" ]]
	1259	then
	1260	(( icycle = 0 ))
	1261	elif [[ "$cycle" = "${extin[$i]}" ]]
	1262	then
	1263	(( icycle = 0 ))
	1264	else
	1265	(( icycle = $cycle ))
	1266	fi
	1267	if (( icycle > maxcycle ))
	1268	then
	1269	(( maxcycle = icycle ))
	1270	file_to_be_used=$zeile
	1271	fi
	1272	done <filelist
	1273	rm filelist
	1274
	1275	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1276	if (( maxcycle > 0 ))
	1277	then
	1278	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1279	then
	1280	filename=${filename}.$maxcycle.${extin[$i]}
	1281	else
	1282	filename=${filename}.$maxcycle
	1283	fi
	1284	else
	1285	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1286	then
	1287	filename=${filename}.${extin[$i]}
	1288	fi
	1289	fi
	1290
	1291	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1292	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1293	absnamein[$i]=$filename
	1294	if (( maxcycle > 0 ))
	1295	then
	1296	if [[ "${actionin[$i]}" = di ]]
	1297	then
	1298	frelin[$i]=${endin[$i]}.$maxcycle
	1299	else
	1300	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1301	fi
	1302	else
	1303	if [[ "${actionin[$i]}" = di ]]
	1304	then
	1305	frelin[$i]=${endin[$i]}
	1306	else
	1307	frelin[$i]=${afname}${endin[$i]}
	1308	fi
	1309	fi
	1310
	1311	fi
	1312	done
[920]	1313
[1]	1314	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1315	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1316	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1317	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1318	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1319	(( i = 0 ))
	1320	while (( i < iout ))
	1321	do
	1322	(( i = i + 1 ))
	1323	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1324	then
[260]	1325	if [[ "${actionout[$i]}" = tr ]]
[1]	1326	then
	1327	actionout[$i]=""
[260]	1328	elif [[ "${actionout[$i]}" = trpe ]]
	1329	then
	1330	actionout[$i]=pe
[1]	1331	elif [[ "${actionout[$i]}" = tra ]]
	1332	then
	1333	actionout[$i]=a
	1334	fi
	1335	(( maxcycle = 0 ))
	1336	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1337	eval catalogname=${pathout[$i]}
	1338	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
[746]	1339	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
[1]	1340	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1341	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1342	then
	1343
	1344	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1345	if cat /dev/null > $filename
	1346	then
	1347	rm $filename
	1348	else
	1349
	1350	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1351	if [[ ! -d $catalogname ]]
	1352	then
	1353	if mkdir -p $catalogname
	1354	then
	1355	printf "\n\n *** directory:"
	1356	printf "\n $catalogname"
	1357	printf "\n was created\n"
	1358	else
	1359	printf "\n\n +++ OUTPUT-file:"
	1360	printf "\n $filename"
	1361	printf "\n cannot be created, because directory does not exist"
	1362	printf "\n and cannot be created either"
	1363	printf "\n"
	1364	locat=output ; exit
	1365	fi 2>/dev/null
	1366	else
	1367	printf "\n\n +++ OUTPUT-file:"
	1368	printf "\n $filename"
	1369	printf "\n cannot be created, although directory exists"
	1370	printf "\n"
	1371	locat=output ; exit
	1372	fi
	1373	fi 2>/dev/null
	1374	else
	1375
	1376	# ZYKLUSNUMMER FESTSTELLEN
	1377	ls -1 -d $filename > filelist 2>/dev/null
	1378	ls -1 -d $filename.* >> filelist 2>/dev/null
	1379	while read zeile
	1380	do
[1101]	1381	cycle=$(echo $zeile \| cut -f2 -d".")
[1]	1382	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1383	then
	1384	(( icycle = 1 ))
	1385	else
	1386	(( icycle = $cycle + 1 ))
	1387	fi
	1388	if (( icycle > maxcycle ))
	1389	then
	1390	(( maxcycle = icycle ))
	1391	fi
	1392	done <filelist
	1393	rm filelist
	1394	fi
	1395
	1396	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1397	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1398	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1399	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1400	if [[ "${actionout[$i]}" != a ]]
	1401	then
	1402	if (( maxcycle > 0 ))
	1403	then
	1404	filename=${filename}.$maxcycle
	1405	if cat /dev/null > $filename
	1406	then
	1407	rm $filename
	1408	else
	1409	printf "\n +++ OUTPUT-file:"
	1410	printf "\n $filename"
	1411	printf "\n cannot be created"
	1412	locat=output ; exit
	1413	fi
	1414	fi
	1415	else
	1416	(( maxcycle = maxcycle - 1 ))
	1417	if (( maxcycle > 0 ))
	1418	then
	1419	filename=${filename}.$maxcycle
	1420	fi
	1421	fi
	1422
	1423	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1424	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1425	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1426	pathout[$i]=$filename
	1427	if (( maxcycle > 0 ))
	1428	then
	1429	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1430	else
	1431	frelout[$i]=${fname}${endout[$i]}
	1432	fi
	1433
	1434	fi
	1435	done
	1436
	1437
[260]	1438	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1439	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1440	then
[260]	1441	if [[ "$dvr_inc" = "" ]]
[83]	1442	then
[260]	1443	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1444	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1445	locat=dvr; exit
[83]	1446	fi
[260]	1447	if [[ "$dvr_lib" = "" ]]
[83]	1448	then
[260]	1449	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1450	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1451	locat=dvr; exit
[83]	1452	fi
	1453	fi
	1454
	1455
[1]	1456	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1457	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1458	# UEBERSETZT ZU WERDEN)
	1459	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1460	then
	1461	printf "\n +++ neither main program nor executable defined"
	1462	locat=source; exit
	1463	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1464	then
	1465	printf "\n +++ main program as well as executable defined"
	1466	locat=source; exit
	1467	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1468	then
	1469	do_compile=false
	1470	fi
	1471
	1472
[191]	1473	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1474	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1475	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1476	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1477	then
	1478	rm -rf SOURCES_FOR_RUN_$fname
	1479	mkdir SOURCES_FOR_RUN_$fname
	1480	fi
	1481
	1482
[1]	1483	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1484	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1485	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1486	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1487	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1488	then
	1489
[5]	1490	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
[1]	1491
[838]	1492	if [[ "$source_list" = LOCALLY_MODIFIED ]]
[1]	1493	then
	1494
[5]	1495	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1496	source_list=""
	1497	cd $source_path
	1498
	1499
	1500	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1501	if [[ ! -d .svn ]]
	1502	then
	1503	printf "\n\n +++ source directory"
	1504	printf "\n \"$source_path\" "
	1505	printf "\n is not under control of \"subversion\"."
[306]	1506	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1507	fi
	1508
	1509
	1510	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1511	Filenames=""
[69]	1512	svn status > tmp_mrun
	1513	while read line
[5]	1514	do
	1515	firstc=`echo $line \| cut -c1`
	1516	if [[ $firstc = M \|\| $firstc = "?" ]]
	1517	then
	1518	Name=`echo "$line" \| cut -c8-`
	1519	extension=`echo $Name \| cut -d. -f2`
	1520	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1521	then
	1522	Filenames="$Filenames "$Name
	1523	fi
	1524	fi
[69]	1525	done < tmp_mrun
[5]	1526
	1527
	1528	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1529	for dateiname in $Filenames
	1530	do
	1531	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1532	source_list=$source_list"$dateiname "
	1533	done
	1534
	1535	cd - > /dev/null
	1536
	1537
[1]	1538	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1539	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1540	# VORHANDEN
[5]	1541	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1542	then
	1543
	1544	cd $source_path
	1545
	1546	for filename in $source_list
	1547	do
	1548
	1549	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
[1103]	1550	if [[ $(echo $filename \| grep -c "/") != 0 ]]
[1]	1551	then
	1552	printf "\n +++ source code file: $filename"
	1553	printf "\n must not contain (\"/\") "
	1554	locat=source; exit
	1555	fi
	1556
	1557	if [[ ! -f $filename ]]
	1558	then
	1559	printf "\n +++ source code file: $filename"
	1560	printf "\n does not exist"
	1561	locat=source; exit
	1562	else
	1563	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1564	fi
	1565
	1566	done
	1567
	1568	cd - > /dev/null
	1569
	1570	fi
	1571
	1572
	1573	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1574	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1575	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1576	if [[ $restart_run != true ]]
[1]	1577	then
	1578
	1579	if [[ ! -f "$source_path/$mainprog" ]]
	1580	then
	1581	printf "\n\n +++ main program: $mainprog"
	1582	printf "\n does not exist in source directory"
	1583	printf "\n \"$source_path\"\n"
	1584	locat=source; exit
	1585	else
	1586	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1587	then
	1588	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1589	source_list=${mainprog}" $source_list"
	1590	fi
	1591	fi
	1592	fi
	1593
	1594
[211]	1595	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1596	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1597	if [[ "$restart_run" != true ]]
	1598	then
	1599	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1600	if [[ ! -f $makefile ]]
	1601	then
	1602	printf "\n +++ file \"$makefile\" does not exist"
	1603	locat=make; exit
	1604	else
	1605	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1606	fi
	1607	fi
	1608
	1609
[1]	1610	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1611	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1612	then
	1613
	1614	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1615	if [[ ! -d $add_source_path ]]
	1616	then
	1617	printf "\n\n +++ WARNING: additional source code directory"
	1618	printf "\n \"$add_source_path\" "
	1619	printf "\n does not exist or is not a directory."
	1620	printf "\n No source code will be used from this directory!\n"
	1621	add_source_path=""
[931]	1622	if [[ $silent == false ]]
	1623	then
	1624	sleep 3
	1625	fi
[1]	1626	else
	1627
	1628	cd $add_source_path
[211]	1629	found=false
[1]	1630
	1631	Names=$(ls -1 *.f90 2>&1)
	1632	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1633	Names=$(ls -1 *.F90 2>&1)
	1634	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1635	Names=$(ls -1 *.F 2>&1)
	1636	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1637	Names=$(ls -1 *.f 2>&1)
	1638	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1639	Names=$(ls -1 *.c 2>&1)
	1640	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1641
	1642	cd - > /dev/null
	1643	cd SOURCES_FOR_RUN_$fname
	1644
[211]	1645	# COPY MAKEFILE IF EXISTING
	1646	if [[ -f $add_source_path/Makefile ]]
	1647	then
	1648	printf "\n\n *** user Makefile from directory"
	1649	printf "\n \"$add_source_path\" is used \n"
[931]	1650	if [[ $silent == false ]]
	1651	then
	1652	sleep 1
	1653	fi
[211]	1654	cp $add_source_path/Makefile .
	1655	fi
	1656
[1]	1657	for dateiname in $AddFilenames
	1658	do
	1659	if [[ -f $dateiname ]]
	1660	then
	1661	printf "\n +++ source code file \"$dateiname\" found in additional"
	1662	printf "\n source code directory \"$add_source_path\" "
[211]	1663	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1664	printf "\n from directory \"$source_path\"."
[1]	1665	locat=source; exit
	1666	fi
	1667
	1668	cp $add_source_path/$dateiname .
	1669	source_list="$source_list $dateiname"
	1670
[211]	1671	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1672	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1673	then
	1674	printf "\n\n +++ user file \"$dateiname\" "
	1675	printf "\n is not listed in Makefile \n"
	1676	locat=source; exit
	1677	else
	1678
[1]	1679	# Default User-Interface von der Liste entfernen, falls Datei
	1680	# ein User-Interface enthaelt
[211]	1681	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1682	# then
	1683	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1684	# then
	1685	# rm -rf user_interface.f90
	1686	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1687	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1688	# printf "\n since a user-interface is found in file"
	1689	# printf "\n \"$add_source_path/$dateiname\" \n"
	1690	# sleep 3
	1691	# else
	1692	if [[ $found = false ]]
[1]	1693	then
[211]	1694	found=true
	1695	printf "\n\n *** following user file(s) added to the"
	1696	printf " files to be translated:\n "
[1]	1697	fi
[211]	1698	printf "$dateiname "
[931]	1699	if [[ $silent == false ]]
	1700	then
	1701	sleep 0.5
	1702	fi
	1703
[1]	1704	fi
	1705	done
[211]	1706	[[ $found = true ]] && printf "\n"
[1]	1707	cd - > /dev/null
	1708	fi
	1709	fi
	1710
	1711
	1712	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1713	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1714	if [[ $restart_run != true && -n $package_list ]]
[1]	1715	then
	1716
	1717	cd $source_path
	1718
	1719	for package in $package_list
	1720	do
	1721
	1722	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1723
	1724	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1725	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1726	# LIEFERT
	1727	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1728
	1729
	1730	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1731	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1732	for source_list_name in $package_source_list
	1733	do
	1734	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1735	then
	1736
	1737	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1738	ending=`echo $source_list_name \| cut -f2 -d.`
	1739	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1740	then
	1741	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1742	source_list="$source_list $source_list_name"
	1743	fi
	1744	fi
	1745	done
	1746	done
	1747
	1748	cd - > /dev/null
	1749	fi
	1750
	1751
	1752	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1753	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1754	# if [[ "$restart_run" != true ]]
	1755	# then
	1756	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1757	# if [[ ! -f $makefile ]]
	1758	# then
	1759	# printf "\n +++ file \"$makefile\" does not exist"
	1760	# locat=make; exit
	1761	# else
	1762	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1763	# fi
	1764	# fi
[1]	1765
	1766	fi # do_compile=true
	1767
	1768
	1769	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1770	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
[1199]	1771	if [[ $do_compile = true \|\| $create_executable_for_batch = true ]]
[1]	1772	then
	1773
	1774	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1775	# ZUSAMMENSETZEN
[83]	1776	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1777	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1778	then
[82]	1779	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1780	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1781	then
[82]	1782	cpp_options="$cpp_options -D__nec"
	1783	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1784	then
	1785	cpp_options="$cpp_options -D__lc"
[1]	1786	else
[82]	1787	cpp_options="$cpp_options -D__$localhost"
[1]	1788	fi
[83]	1789
	1790	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1791	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1792	then
[82]	1793	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1794	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1795	else
[82]	1796	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1797	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1798	fi
[83]	1799
	1800	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1801	if [[ -n $package_list ]]
	1802	then
	1803	for package in $package_list
	1804	do
	1805	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1806	then
	1807	if [[ $package != "dvrp_graphics+1PE" ]]
	1808	then
[82]	1809	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1810	else
[82]	1811	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1812	export use_seperate_pe_for_dvrp_output=true
	1813	fi
	1814	else
	1815	if [[ $package != "dvrp_graphics+1PE" ]]
	1816	then
[82]	1817	cpp_options="$cpp_options -D__$package"
[1]	1818	else
[82]	1819	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1820	export use_seperate_pe_for_dvrp_output=true
	1821	fi
	1822	fi
	1823	done
	1824	fi
[83]	1825
	1826	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1827	if [[ -n $cpp_opts ]]
	1828	then
	1829	for popts in $cpp_opts
	1830	do
[82]	1831	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1832	then
	1833	cpp_options="${cpp_options},-D__$popts=__$popts"
	1834	else
	1835	cpp_options="$cpp_options -D__$popts"
	1836	fi
[1]	1837	done
	1838	fi
	1839
	1840	else
	1841
	1842
	1843	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1844	if [[ $do_remote = false ]]
	1845	then
	1846	if [[ ! -f $executable ]]
	1847	then
	1848	printf "\n +++ executable file: $executable"
	1849	printf "\n does not exist"
	1850	locat=executable; exit
	1851	fi
	1852	fi
	1853	fi
	1854
	1855
	1856	# JOBMODUS FESTSTELLEN
[635]	1857	if [[ "$ENVIRONMENT" = BATCH ]]
[1]	1858	then
	1859	jobmo=BATCH
	1860	else
	1861	jobmo=INTERACTIVE
	1862	fi
	1863
	1864
[635]	1865	# no interactive runs on lctit
	1866	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
	1867	then
	1868	printf "\n +++ no interactive runs allowed on host \"$host\" "
	1869	printf "\n please submit batch job using mrun option \"-b\" \n"
	1870	locat=normal; exit
	1871	fi
	1872
	1873
[1]	1874	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1875	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1876	if [[ "$compiler_name" = "" ]]
	1877	then
[82]	1878
[220]	1879	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1880	locat=compiler_name; exit
	1881
[1]	1882	fi
	1883
	1884
[251]	1885	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	1886	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	1887
	1888
	1889
	1890	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	1891	kennung=$RANDOM
	1892	if [[ "$tmp_user_catalog" = "" ]]
	1893	then
[312]	1894	if [[ $localhost = ibmh ]]
[1]	1895	then
[312]	1896	tmp_user_catalog=$SCRATCH
[1]	1897	elif [[ $localhost = nech ]]
	1898	then
	1899	tmp_user_catalog=$WRKSHR
	1900	else
	1901	tmp_user_catalog=/tmp
	1902	fi
	1903	fi
	1904	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	1905
	1906
	1907	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	1908	# BESTIMMEN
	1909	if [[ "$tmp_data_catalog" = "" ]]
	1910	then
[622]	1911	if [[ $localhost = nech ]]
[1]	1912	then
	1913	tmp_data_catalog=$WRKSHR/mrun_restart_data
	1914	else
	1915	tmp_data_catalog=/tmp/mrun_restart_data
	1916	fi
	1917	fi
	1918
	1919
	1920	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	1921	# ERSETZEN
[1199]	1922	if [[ $do_remote = false && $do_compile = true \|\| $create_executable_for_batch = true ]]
[1]	1923	then
	1924	eval fopts=\"$fopts\"
	1925	eval lopts=\"$lopts\"
	1926	fi
	1927
	1928
	1929
	1930	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[1210]	1931	fopts="$fopts $netcdf_inc $fftw_inc $dvr_inc"
	1932	lopts="$lopts $netcdf_lib $fftw_lib $dvr_lib"
[1]	1933	ROPTS="$ropts"
[1099]	1934	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
[1090]	1935	# then
[1]	1936	XOPT="-X $numprocs"
[1090]	1937	# fi
[1]	1938
	1939
	1940
	1941	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	1942	# GRAMM BENOETIGT
	1943	done=false
	1944	while [[ $done = false ]]
	1945	do
	1946	cputime=$cpumax
	1947	if (( $cputime == 0 ))
	1948	then
[246]	1949	if [[ $do_batch = true ]]
	1950	then
	1951	printf "\n +++ cpu-time is undefined"
	1952	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	1953	printf "\n >>> "
	1954	read cputime 1>/dev/null 2>&1
	1955	else
	1956	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	1957	fi
[1]	1958	else
	1959	done=true
	1960	fi
	1961	cpumax=$cputime
	1962	done
	1963
	1964	(( minuten = cputime / 60 ))
	1965	(( sekunden = cputime - minuten * 60 ))
	1966
	1967
	1968	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	1969	if [[ $do_batch = true ]]
	1970	then
	1971	done=false
	1972	while [[ $done = false ]]
	1973	do
	1974	if (( memory == 0 ))
	1975	then
	1976	printf "\n +++ memory demand is undefined"
	1977	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	1978	printf "\n >>> "
	1979	read memory 1>/dev/null 2>&1
	1980	else
	1981	done=true
	1982	fi
	1983	done
	1984	fi
	1985
	1986
	1987	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	1988	if [[ $do_remote = true && -z $remote_username ]]
	1989	then
	1990	while [[ -z $remote_username ]]
	1991	do
	1992	printf "\n +++ username on remote host \"$host\" is undefined"
	1993	printf "\n >>> Please type username:"
	1994	printf "\n >>> "
	1995	read remote_username
	1996	done
	1997	mc="$mc -u$remote_username"
	1998	fi
	1999
[892]	2000	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
	2001	if [[ "$login_init_cmd" != "" ]]
	2002	then
	2003	export init_cmds="${login_init_cmd};"
	2004	fi
[221]	2005
[892]	2006
[493]	2007	# set module load command and export for subjob
	2008	if [[ "$modules" != "" ]]
	2009	then
[678]	2010	if [[ $host = lctit ]]
	2011	then
	2012	export module_calls=". $modules"
	2013	else
	2014	export module_calls="module load ${modules};"
	2015	fi
[493]	2016	fi
	2017
[683]	2018	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
[562]	2019	if [[ $host = lcsgib \|\| $host = lcsgih ]]
[555]	2020	then
	2021	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
	2022	then
[562]	2023	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
[555]	2024	fi
[721]	2025	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
	2026	# then
	2027	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
	2028	# echo "*** module_calls = $module_calls"
	2029	# fi
[555]	2030	fi
[493]	2031
[555]	2032
[221]	2033	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2034	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2035	then
[493]	2036	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
	2037	then
	2038	mpilib=mpt
	2039	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
	2040	then
	2041	mpilib=mvapich
[738]	2042	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
	2043	then
	2044	mpilib=impi
[493]	2045	fi
[221]	2046	fi
	2047
	2048
	2049
[1]	2050	###########################################################################
	2051	# HEADER-AUSGABE
	2052	###########################################################################
	2053
	2054
	2055	calltime=$(date)
	2056	printf "\n"
	2057	# [[ $silent = false ]] && clear
[1101]	2058	printf "#------------------------------------------------------------------------# \n"
	2059	printf "\| %-35s%35s \| \n" "$version" "$calltime"
	2060	printf "\| \| \n"
[1]	2061	spalte1="called on:"; spalte2=$localhost_realname
[1101]	2062	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2063	if [[ $local_compile = false ]]
	2064	then
	2065	if [[ $do_remote = true ]]
	2066	then
	2067	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2068	else
	2069	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2070	fi
	2071	else
	2072	spalte1="compiling test only!"; spalte2=""
	2073	fi
[1101]	2074	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2075	if [[ -n $numprocs ]]
	2076	then
[1106]	2077	if [[ $run_coupled_model = false ]]
	2078	then
	2079	spalte1="number of PEs:"; spalte2=$numprocs
	2080	else
	2081	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
	2082	fi
[1101]	2083	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2084	fi
	2085	if [[ -n $tasks_per_node ]]
	2086	then
	2087	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
[1101]	2088	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2089	fi
[759]	2090	if [[ $maximum_parallel_io_streams != $numprocs ]]
	2091	then
	2092	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
[1101]	2093	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[759]	2094	fi
[622]	2095	if [[ $use_openmp = true ]]
[1]	2096	then
	2097	spalte1="threads per task:"; spalte2="$threads_per_task"
[1101]	2098	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2099	fi
[1101]	2100	printf "\| \| \n"
[1]	2101	if [[ $do_compile = true ]]
	2102	then
[475]	2103	if [[ "$mopts" != "" ]]
	2104	then
[1101]	2105	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
	2106	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2107	zeile=$(echo "$mopts" \| cut -c46-)
[475]	2108	while [[ "$zeile" != "" ]]
	2109	do
	2110	spalte1=""
[1101]	2111	spalte2=$(echo "$zeile" \| cut -c-45)
	2112	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2113	zeile=$(echo "$zeile" \| cut -c46-)
[475]	2114	done
	2115	fi
	2116
[1101]	2117	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
	2118	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2119	zeile=$(echo "$cpp_options" \| cut -c46-)
[1]	2120	while [[ "$zeile" != "" ]]
	2121	do
	2122	spalte1=""
[1101]	2123	spalte2=$(echo "$zeile" \| cut -c-45)
	2124	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2125	zeile=$(echo "$zeile" \| cut -c46-)
[1]	2126	done
	2127
[1101]	2128	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
	2129	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2130	zeile=$(echo "$fopts" \| cut -c46-)
[1]	2131	while [[ "$zeile" != "" ]]
	2132	do
	2133	spalte1=""
[1101]	2134	spalte2=$(echo "$zeile" \| cut -c-45)
	2135	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2136	zeile=$(echo "$zeile" \| cut -c46-)
[1]	2137	done
	2138
[1101]	2139	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
	2140	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2141	zeile=$(echo "$lopts" \| cut -c46-)
[1]	2142	while [[ "$zeile" != "" ]]
	2143	do
	2144	spalte1=""
[1101]	2145	spalte2=$(echo "$zeile" \| cut -c-45)
	2146	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2147	zeile=$(echo "$zeile" \| cut -c46-)
[1]	2148	done
	2149
[1101]	2150	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
	2151	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2152	zeile=$(echo "$modules" \| cut -c46-)
[493]	2153	while [[ "$zeile" != "" ]]
	2154	do
	2155	spalte1=""
[1101]	2156	spalte2=$(echo "$zeile" \| cut -c-45)
	2157	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2158	zeile=$(echo "$zeile" \| cut -c46-)
[493]	2159	done
	2160
[1101]	2161	spalte1="main program:"; spalte2=$mainprog
	2162	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2163	else
	2164	spalte1=executable:; spalte2=$executable
[1101]	2165	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2166	fi
[1101]	2167	printf "\| \| \n"
	2168	spalte1="base name of files:"; spalte2=$fname
	2169	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2170	if [[ $fname != $afname ]]
	2171	then
[1101]	2172	spalte1="base name of input files:"; spalte2=$afname
	2173	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2174	fi
[1101]	2175	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
	2176	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2177	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
	2178	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2179
[1106]	2180	if [[ "$ocean_file_appendix" = true ]]
	2181	then
	2182	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
	2183	fi
	2184
[1]	2185	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2186	then
	2187	spalte1="memory demand / PE":; spalte2="$memory MB"
[1101]	2188	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2189	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
[1101]	2190	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2191	fi
	2192
	2193	if [[ $do_compile = true ]]
	2194	then
[1101]	2195	printf "\| \| \n"
	2196	printf "\| Files to be compiled: \| \n"
[1]	2197	zeile=$source_list
	2198	while [[ "$zeile" != "" ]]
	2199	do
[1101]	2200	linestart=$(echo $zeile \| cut -c-70)
	2201	printf "\| %-70s \| \n" "$linestart"
	2202	zeile=$(echo "$zeile" \| cut -c71-)
[1]	2203	done
	2204	fi
[1101]	2205	printf "#------------------------------------------------------------------------#"
[1]	2206
	2207
	2208
	2209	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2210	if [[ $do_trace = true ]]
	2211	then
	2212	(( i = 0 ))
	2213	while (( i < iin ))
	2214	do
	2215	(( i = i + 1 ))
	2216	if (( i == 1 ))
	2217	then
	2218	printf "\n\n >>> INPUT-file assignments:\n"
	2219	fi
	2220	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2221	done
	2222	(( i = 0 ))
	2223	while (( i < iout ))
	2224	do
	2225	(( i = i + 1 ))
	2226	if (( i == 1 ))
	2227	then
	2228	printf "\n\n >>> OUTPUT-file assignments:\n"
	2229	fi
	2230	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2231	done
	2232	(( i = 0 ))
	2233	while (( i < iic ))
	2234	do
	2235	(( i = i + 1 ))
	2236	if (( i == 1 ))
	2237	then
	2238	printf "\n\n >>> INPUT-commands:\n"
	2239	fi
	2240	printf "\n ${in_command[$i]}"
	2241	done
	2242	(( i = 0 ))
	2243	while (( i < ioc ))
	2244	do
	2245	(( i = i + 1 ))
	2246	if (( i == 1 ))
	2247	then
	2248	printf "\n\n >>> OUTPUT-commands:\n"
	2249	fi
	2250	printf "\n ${out_command[$i]}"
	2251	done
	2252	fi
	2253
	2254
	2255	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2256	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2257	then
	2258	antwort=dummy
	2259	printf "\n\n"
[1101]	2260	printf " >>> everything o.k. (y/n) ? "
	2261	while read antwort
[1]	2262	do
[1101]	2263	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2264	then
	2265	printf " >>> everything o.k. (y/n) ? "
	2266	else
	2267	break
	2268	fi
[1]	2269	done
	2270	if [[ $antwort = n \|\| $antwort = N ]]
	2271	then
	2272	locat=user_abort; (( iec = 0 )); exit
	2273	fi
	2274	if [[ $do_batch = true ]]
	2275	then
	2276	printf " >>> batch-job will be created and submitted"
	2277	else
	2278	if [[ $local_compile = false ]]
	2279	then
	2280	printf " >>> MRUN will now continue to execute on this machine"
	2281	else
	2282	printf " >>> a test compilation will now be carried out on this machine"
	2283	fi
	2284	fi
	2285	fi
	2286
[841]	2287
[1101]	2288	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
	2289	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
[841]	2290	check_depository="${working_directory}/trunk/UTIL"
	2291	check_sources="${working_directory}/tmp_check_namelist_files"
[818]	2292	skip_check=false
[841]	2293
[1101]	2294	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
[920]	2295	if [[ ! -f $check_depository/check_namelist_files.tar ]]
[841]	2296	then
[1101]	2297	skip_check=true
	2298	reason="run on remote host or parameter file check has not been compiled."
[920]	2299	fi
	2300	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
	2301	then
[1101]	2302	skip_check=true
	2303	reason="parameter file check has not been compiled."
[892]	2304	fi
[841]	2305
[1101]	2306	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
[892]	2307	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
	2308	then
[1101]	2309	skip_check=true
	2310	reason="serial run."
[841]	2311	fi
	2312
[1101]	2313	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
	2314	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
	2315	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
	2316	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
[892]	2317	if [[ $check_namelist_files == false ]]
[807]	2318	then
[1101]	2319	skip_check=true
	2320	reason="-z option set."
[815]	2321	fi
[892]	2322
	2323	if [[ $fromhost != $localhost ]]
[815]	2324	then
[1101]	2325	skip_check=true
	2326	reason="submitting host is local host."
[892]	2327	fi
[1]	2328
[892]	2329	if [[ $run_coupled_model == true ]]
	2330	then
	2331	skip_check=true
	2332	reason="coupled run."
	2333	fi
[1]	2334
[892]	2335	if [[ $restart_run == true ]]
	2336	then
	2337	skip_check=true
	2338	reason="restart run."
	2339	fi
[807]	2340
[1101]	2341	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
[1122]	2342	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
	2343	last_char=`echo $filename_input \| cut -c $last_char_int`
[892]	2344	if [[ "$last_char" == "f" ]]
	2345	then
	2346	skip_check=true
[1069]	2347	reason="restart run."
[892]	2348	fi
[807]	2349
[892]	2350	if [[ $skip_check == false ]]
	2351	then
	2352	tmp_check=${working_directory}/tmp_check
[841]	2353
[1101]	2354	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
	2355	# NOT NECESSARILY REQUIRED
[818]	2356	line=""
	2357	found=false
[892]	2358	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
[818]	2359	while read line1
	2360	do
	2361	line="$line1"
	2362	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2363	then
	2364	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
	2365	found=true
	2366	fi
	2367	done < $tmp_check
[807]	2368
[818]	2369	if [[ $found = false ]]
	2370	then
	2371	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
	2372	fi
	2373
[807]	2374	rm -rf ${working_directory}/tmp_check
	2375
[1101]	2376	# CHECK IF THE A P3DF FILE MUST BE CHECKED
[807]	2377	for item in $input_list
	2378	do
[892]	2379	if [[ "$item" == "restart" ]]
[807]	2380	then
	2381	check_restart=1
	2382	else
	2383	check_restart=0
	2384	fi
	2385	done
	2386
[1101]	2387	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
	2388	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
[807]	2389	then
[920]	2390	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
[807]	2391	locat=check_namelist; exit
	2392	fi
	2393
[1101]	2394	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
[807]	2395	if [[ $check_restart == 1 ]]
	2396	then
[892]	2397
[920]	2398	filenamef="${filename_input}f"
[892]	2399	if [[ ! -f $filenamef ]]
[807]	2400	then
[892]	2401	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
[807]	2402	check_restart=0
	2403	answer=dummy
	2404	printf "\n\n"
	2405
[818]	2406	if [[ $silent == false ]]
[807]	2407	then
[818]	2408	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2409	do
	2410	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2411	read answer
	2412	done
	2413	if [[ $answer = a \|\| $answer = A ]]
	2414	then
	2415	printf "\n +++ Aborting...."
	2416	locat=normal; exit
	2417	fi
[807]	2418	fi
	2419	else
	2420	check_restart=1
	2421	fi
	2422	fi
	2423
[1101]	2424	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
[807]	2425	mkdir $check_sources
	2426	cd $check_sources
	2427
[892]	2428
[1101]	2429	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
[892]	2430	if [[ -d $add_source_path ]]
[807]	2431	then
	2432	printf "\n\n *** copying files from $check_depository"
	2433	cp $check_depository/check_namelist_files.tar ./
	2434
	2435	printf "\n\n *** untar of makefile and source files in $check_sources"
	2436	tar -xf check_namelist_files.tar > /dev/null 2>&1
	2437
	2438	printf "\n\n *** adding user code."
[892]	2439	cp $add_source_path/* ./
[807]	2440	touch check_namelist_files.f90
	2441
[1101]	2442	# GET COMPILER OPTIONS AND PERFORM MAKE
[807]	2443	printf "\n\n *** compiling code if necessary...\n"
[1045]	2444
[1101]	2445	# workaround for batch jobs on local machine (lcxe6)
[1045]	2446	if [[ $do_batch == true && $do_remote == false ]]
	2447	then
	2448	eval $init_cmds
	2449	fi
	2450
[1101]	2451	# GET CHECK OPTIONS
[1083]	2452	line=""
	2453	found=false
	2454
	2455	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
	2456
	2457	while read line1
	2458	do
	2459
	2460	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
	2461	then
	2462	line="$line1"
	2463	fi
	2464
	2465	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2466	then
[1101]	2467	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
	2468	line="$line "
[1083]	2469	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
	2470	found=true
	2471	fi
	2472
	2473	done < $tmp_check
	2474	copts_check="$copts_check -D__check -D__parallel"
	2475
[807]	2476	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
	2477
[1101]	2478	# GET MAKE OUTPUT
[807]	2479	if [[ $? != 0 ]]
	2480	then
[815]	2481	printf "\n +++ error during make."
	2482	answer=dummy
	2483	printf "\n\n"
[818]	2484	if [[ $silent == false ]]
[815]	2485	then
[818]	2486	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2487	do
	2488	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2489	read answer
	2490	done
	2491	if [[ $answer = a \|\| $answer = A ]]
	2492	then
	2493	printf "\n +++ Aborting..."
	2494	rm -rf $check_sources
	2495	locat=normal; exit
	2496	else
	2497	skip_check=true
	2498	fi
[815]	2499	else
	2500	skip_check=true
	2501	fi
[807]	2502	fi
	2503	else
	2504	cp $PALM_BIN/check_namelist_files.x ./
	2505	fi
	2506
[920]	2507	cp $filename_input ./PARIN
[807]	2508	if [[ $check_restart == 1 ]]
	2509	then
[892]	2510	cp $filenamef ./PARINF
[807]	2511	fi
	2512
[892]	2513	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
[818]	2514	then
	2515	printf "\n *** adding topography data"
[892]	2516	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
[818]	2517
[1101]	2518	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
	2519	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
	2520	# WHICH REQUIRE SUFFICIENT MEMORY
[818]	2521	ulimit -s unlimited
	2522	fi
	2523
[1101]	2524	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
[807]	2525	cat > ENVPAR << %%END%%
[823]	2526	&envpar run_identifier = '$fname', host = '$host',
[807]	2527	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2528	maximum_parallel_io_streams = $maximum_parallel_io_streams,
	2529	maximum_cpu_time_allowed = ${cpumax}.,
	2530	revision = '$global_revision',
	2531	local_dvrserver_running = $local_dvrserver_running /
	2532
	2533	%%END%%
	2534
[1101]	2535	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
	2536	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
	2537	then
[807]	2538	printf "\n +++ WARNING: check_namelist_files.x not found."
	2539	answer=dummy
	2540	printf "\n\n"
[818]	2541
	2542	if [[ $silent == false ]]
[807]	2543	then
[818]	2544	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2545	do
	2546	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2547	read answer
	2548	done
	2549	if [[ $answer = a \|\| $answer = A ]]
	2550	then
	2551	printf "\n +++ Aborting..."
	2552	rm -rf $check_sources
	2553	locat=normal; exit
	2554	else
[1101]	2555	printf "\n *** skipping parameter file check."
[818]	2556	fi
	2557	fi
	2558
[815]	2559	elif [[ $skip_check == false ]]
	2560	then
[1101]	2561	# STARTING THE PARAMETER FILE CHECK
[807]	2562	printf "\n\n *** starting parameter file check..."
	2563
[1101]	2564	# CHECKING THE P3D FILE
[920]	2565	printf "\n\n (1) checking $filename_input"
[931]	2566	echo "$numprocs 0 0" > VARIN
[807]	2567	errors=`./check_namelist_files.x < VARIN 2>&1`
	2568
	2569	check_error=false
	2570	if [[ "$errors" == "" ]]
	2571	then
	2572	printf " --> o.k."
	2573	else
	2574	printf " --> failed."
	2575	check_error=true
	2576	printf "\n\n $errors"
	2577	fi
	2578
[1101]	2579	# CHECKING THE PD3F FILE IF NECESSARY
[807]	2580	if [[ $check_restart == 1 && $check_error == false ]]
	2581	then
[892]	2582	printf "\n\n (2) checking $filenamef"
[807]	2583
[1101]	2584	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
	2585	# IN &INIPAR LIST
[807]	2586	found=false
[1101]	2587	cat PARINF \| while read line
[807]	2588	do
	2589	line=$(echo $line\|sed 's/ //g')
	2590	if [[ $line == "&inipar" ]]
	2591	then
	2592	start_search=true
	2593	fi
	2594
	2595	if [[ $start_search == true ]]
	2596	then
	2597	if [[ $line == "initializing_actions='read_restart_data'" ]]
	2598	then
	2599	found=true
	2600	break
	2601	fi
	2602	fi
	2603
	2604	if [[ $line == "/" ]]
	2605	then
	2606	start_search=false
	2607	fi
	2608
	2609	done
	2610
	2611	if [[ $found = false ]]
	2612	then
	2613	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
	2614	printf "\n in &inipar list in $fname$p3df_suffix."
	2615	rm -rf $check_sources
	2616	locat=check_namelist; exit
	2617	fi
	2618
[1101]	2619	# READ max_user_pr FROM FILES
[931]	2620	if [[ -f parin_for_check ]]
	2621	then
	2622	read max_pr_user < parin_for_check
	2623	else
	2624	max_user_pr=0
	2625	fi
	2626
	2627	echo "$numprocs 1 $max_pr_user" > VARIN
[807]	2628	errors=`./check_namelist_files.x < VARIN 2>&1`
	2629
	2630	if [[ "$errors" == "" ]]
	2631	then
	2632	printf " --> o.k."
	2633	else
	2634	printf " --> failed."
	2635	check_error=true
	2636	printf "\n\n $errors"
	2637	fi
	2638	fi
	2639
[1101]	2640	# REPORT ERRORS AND CONTINUE/EXIT
[807]	2641	if [[ $check_error == true ]]
	2642	then
	2643	printf "\n +++ errors found in the parameter file!\n"
	2644	answer=dummy
	2645	printf "\n\n"
	2646
	2647	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2648	do
[1101]	2649	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2650	read answer
[807]	2651	done
	2652
	2653	if [[ $answer = a \|\| $answer = A ]]
	2654	then
	2655	printf "\n +++ Aborting..."
	2656	rm -rf $check_sources
	2657	locat=normal; exit
	2658	fi
	2659	else
	2660	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
	2661	fi
	2662	rm -rf $check_sources
	2663	fi
	2664	else
[1103]	2665	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
[807]	2666	fi
	2667
[818]	2668	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
	2669	rm -rf $check_sources
[807]	2670	cd $working_directory
	2671
[892]	2672
[1199]	2673	# DETERMINE PATH FOR MAKE DEPOSITORY
	2674	if [[ $do_batch = false \|\| $create_executable_for_batch = true ]]
	2675	then
	2676
	2677	line=""
	2678	grep "%depository_path" $config_file > tmp_mrun
	2679	while read line
	2680	do
	2681	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2682	then
	2683	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
	2684	then
	2685	global_depository_path=`echo $line \| cut -d" " -s -f2`
	2686	fi
	2687	fi
	2688	done < tmp_mrun
	2689
	2690	line=""
	2691	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2692	while read line
	2693	do
	2694	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2695	then
	2696	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2697	then
	2698	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2699	fi
	2700	fi
	2701	done < tmp_mrun
	2702
	2703	if [[ "$local_depository_path" = "" ]]
	2704	then
	2705	if [[ "$global_depository_path" != "" ]]
	2706	then
	2707	local_depository_path=$global_depository_path
	2708	else
	2709	printf "\n\n +++ no depository path found in configuration file"
	2710	printf "\n for local host \"$localhost\" "
	2711	printf "\n please set \"\%depository_path\" in configuration file\n"
	2712	locat=config_file; exit
	2713	fi
	2714	fi
	2715	eval local_depository_path=$local_depository_path
	2716	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2717	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
	2718
	2719
	2720	basename=`echo $mainprog \| cut -f1 -d"."`
	2721	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2722	if [[ ! -f $make_depository ]]
	2723	then
	2724	printf "\n"
	2725	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2726	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2727	fi
	2728
	2729	fi
	2730
	2731
[807]	2732	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2733	# CHENDE AKTIONEN DURCHGEFUEHRT
[1]	2734	if [[ $do_batch = false ]]
	2735	then
	2736
	2737
	2738	# TEMPORAEREN KATALOG ERZEUGEN
	2739	mkdir -p $TEMPDIR
	2740	chmod go+rx $TEMPDIR
	2741	tmpcreate=true
	2742
	2743
	2744	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2745	# TEMPORAERES VERZEICHNIS KOPIEREN
	2746	if [[ $do_compile = true ]]
	2747	then
	2748
	2749	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2750	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2751	if [[ $localhost = nech ]]
	2752	then
	2753	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2754	if mkdir -p $TEMPDIR_COMPILE
	2755	then
	2756	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2757	printf "\n is generated as temporary directory for cross compiling\n"
	2758	else
	2759	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2760	printf "\n needed for cross compilation failed"
	2761	locat=compile
	2762	exit
	2763	fi
	2764	else
	2765	TEMPDIR_COMPILE=$TEMPDIR
	2766	fi
	2767
[1199]	2768	cp $make_depository $TEMPDIR_COMPILE
	2769	cd $TEMPDIR_COMPILE
	2770	tar -xf $make_depository > /dev/null 2>&1
	2771	cd - > /dev/null
[1]	2772
[82]	2773	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2774
[1]	2775	else
[475]	2776
[1]	2777	cp $executable ${TEMPDIR}/a.out
[475]	2778
[1]	2779	fi
	2780
	2781
	2782	# WECHSEL IN TEMPORAEREN KATALOG
[475]	2783	cd $TEMPDIR
[1]	2784	printf "\n *** changed to temporary directory: $TEMPDIR"
	2785
	2786
	2787	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2788	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2789	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2790	# ERMITTELN
	2791	(( i = 0 ))
	2792	while (( i < iout ))
	2793	do
	2794	(( i = i + 1 ))
	2795	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2796	then
	2797	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2798	else
	2799	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2800	fi
	2801	done
	2802
	2803
[1199]	2804	# IF REQUIRED, START WITH COMPILING ACTIONS
[1]	2805	if [[ $do_compile = true ]]
	2806	then
	2807
	2808
[1199]	2809	if [[ -f a.out ]]
[475]	2810	then
[82]	2811
[1199]	2812	# EXECUTABLE WAS CREATED DURING INTERACTIVE CALL OF MRUN
	2813	printf "\n\n\n *** executable a.out found"
	2814	printf "\n no compilation required \n"
	2815
[1]	2816	else
[807]	2817
[1199]	2818	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
	2819	printf "\n\n\n *** compilation starts \n$striche\n"
	2820	printf " *** compilation with make using following options:\n"
	2821	printf " make depository: $make_depository"
	2822	if [[ "$mopts" != "" ]]
	2823	then
	2824	printf " make options: $mopts\n"
	2825	fi
	2826	printf " compilername: $compiler_name\n"
	2827	printf " compiler options: $fopts\n"
	2828	printf " preprocessor directives: $cpp_options \n"
	2829	printf " linker options: $lopts \n"
	2830	if [[ "$modules" != "" ]]
	2831	then
	2832	printf " modules to be load: $modules \n"
	2833	fi
	2834	printf " source code files: $source_list \n"
[1]	2835
[1199]	2836	if [[ $localhost = nech ]]
	2837	then
	2838	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2839	cp $TEMPDIR_COMPILE/a.out .
	2840	[[ $? != 0 ]] && compile_error=true
	2841	rm -rf $TEMPDIR_COMPILE
	2842	elif [[ $localhost = ibmh ]]
	2843	then
	2844	printf " compiler is called via ssh on \"plogin1\" \n"
	2845	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2846	[[ ! -f a.out ]] && compile_error=true
	2847	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2848	elif [[ $localhost = lcsgib ]]
	2849	then
	2850	printf " compiler is called via ssh on \"bicegate0\" \n"
	2851	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2852	[[ ! -f a.out ]] && compile_error=true
	2853	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2854	elif [[ $localhost = lcsgih ]]
	2855	then
	2856	printf " compiler is called via ssh on \"hicegate0\" \n"
	2857	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
	2858	[[ ! -f a.out ]] && compile_error=true
	2859	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2860	elif [[ $localhost = lcflow ]]
	2861	then
	2862	printf " compiler is called via ssh on \"flow\" \n"
[1201]	2863	/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[1199]	2864	[[ ! -f a.out ]] && compile_error=true
	2865	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1229]	2866	elif [[ $localhost = lccrayf ]]
[1199]	2867	then
	2868	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	2869	else
	2870	[[ "$init_cmds" != "" ]] && eval $init_cmds
	2871	[[ "$module_calls" != "" ]] && eval $module_calls
	2872	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	2873	fi
[181]	2874
[1199]	2875	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2876	then
	2877	printf "\n +++ error occured while compiling or linking"
	2878	locat=compile
	2879
[181]	2880	exit
[1199]	2881	else
	2882	printf "$striche\n *** compilation finished \n"
	2883	fi
	2884
[1]	2885	fi
[1199]	2886
[1]	2887	fi
	2888
	2889
	2890	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2891	if [[ $local_compile = true ]]
	2892	then
	2893	cd $HOME
	2894	rm -rf $TEMPDIR
	2895	locat=local_compile; exit
	2896	fi
	2897
	2898
	2899	# BEREITSTELLEN DER INPUT-DATEIEN
	2900	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2901	(( i = 0 ))
	2902	while (( i < iin ))
	2903	do
	2904	(( i = i + 1 ))
	2905	if (( i == 1 ))
	2906	then
	2907	printf "\n\n *** providing INPUT-files:\n$striche"
	2908	fi
	2909
	2910
	2911	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2912	if [[ "${transin[$i]}" = unavailable ]]
	2913	then
	2914	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2915	then
	2916	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2917	printf "\n is not available!"
	2918	else
	2919	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2920	printf "\n is not available!"
	2921	fi
	2922	continue
	2923	fi
	2924
	2925	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2926	files_for_pes=false; datentyp=file
	2927	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2928	then
	2929	files_for_pes=true; datentyp=directory
	2930	actionin[$i]=""
	2931	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2932	then
	2933	actionin[$i]=""
	2934	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2935	then
	2936	files_for_pes=true; datentyp=directory
	2937	actionin[$i]="ar"
	2938	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2939	then
	2940	actionin[$i]="ar"
	2941	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2942	then
	2943	files_for_pes=true; datentyp=directory
	2944	actionin[$i]="fl"
	2945	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2946	then
	2947	actionin[$i]="fl"
	2948	fi
	2949
	2950	if [[ $files_for_pes = true ]]
	2951	then
	2952	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2953	else
	2954	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2955	fi
	2956
	2957	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2958	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2959	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2960	# SERVER ZU HOLEN
	2961	if [[ "${actionin[$i]}" = fl ]]
	2962	then
	2963	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2964	if [[ $files_for_pes = false ]]
	2965	then
	2966	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2967	then
	2968	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2969	got_tmp[$i]=true
	2970	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2971	then
	2972	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2973	printf "\n *** trying to use backup copy in \"$WORK\" "
	2974	cp $WORK/${frelin[$i]} ${localin[$i]}
	2975	else
	2976	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2977	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2978	printf "\n *** trying to get copy from archive"
	2979	actionin[$i]=ar
	2980	fi
	2981	else
	2982	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2983	then
	2984	mkdir ${localin[$i]}
[149]	2985	cd $tmp_data_catalog/${frelin[$i]}
	2986	for file in $(ls *)
	2987	do
	2988	ln $file $TEMPDIR/${localin[$i]}
	2989	done
	2990	cd $TEMPDIR
[1]	2991	got_tmp[$i]=true
	2992	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2993	then
	2994	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2995	printf "\n *** trying to use backup copy in \"$WORK\" "
	2996	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2997	else
	2998	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2999	printf "\n or \"$tmp_data_catalog\" does not exist!"
	3000	printf "\n *** trying to get copy from archive"
	3001	actionin[$i]=ar
	3002	fi
	3003	fi
	3004	fi
	3005
	3006
	3007	# DATEI LIEGT AUF ARCHIV-SERVER
	3008	if [[ "${actionin[$i]}" = ar ]]
	3009	then
	3010
	3011	if [[ $files_for_pes = false ]]
	3012	then
	3013	printf "\n file will be restored from archive-system ($archive_system)!"
	3014	else
	3015	printf "\n directory will be restored from archive-system ($archive_system)!"
	3016	fi
	3017
	3018	file_restored=false
	3019
	3020	if [[ $archive_system = asterix ]]
	3021	then
	3022	do_stagein=true
	3023	(( stagein_anz = 0 ))
	3024	while [[ $do_stagein = true ]]
	3025	do
	3026	if [[ $files_for_pes = false ]]
	3027	then
	3028	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	3029	else
	3030	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	3031	fi
	3032	cat STAGEIN_OUTPUT
	3033	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	3034	then
	3035	file_restored=true
	3036	do_stagein=false
	3037	else
	3038	(( stagein_anz = stagein_anz + 1 ))
	3039	if (( stagein_anz == 10 ))
	3040	then
	3041	printf "\n +++ stagein stoped after 10 tries"
	3042	locat=stage
	3043	exit
	3044	fi
	3045	printf "\n +++ restoring from archive failed, trying again:"
	3046	sleep 900
	3047	fi
	3048	done
	3049	elif [[ $archive_system = DMF ]]
	3050	then
	3051	if [[ $files_for_pes = false ]]
	3052	then
	3053	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	3054	locat=DMF
	3055	exit
	3056	else
	3057	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	3058	cp -r $ARCHIVE/${frelin[$i]} $PWD
	3059	file_restored=true
	3060	fi
	3061	elif [[ $archive_system = tivoli ]]
	3062	then
	3063	if [[ $files_for_pes = false ]]
	3064	then
[399]	3065	if [[ $localhost = lcsgih ]]
[1]	3066	then
[1094]	3067	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	3068	else
[1094]	3069	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	3070	fi
	3071	else
	3072	(( inode = 0 ))
	3073	while (( inode < nodes ))
	3074	do
[399]	3075	if [[ $localhost = lcsgih ]]
[1]	3076	then
[1094]	3077	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	3078	else
[1094]	3079	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	3080	fi
	3081	(( inode = inode + 1 ))
	3082	done
	3083	fi
	3084	file_restored=true
	3085	elif [[ $archive_system = ut ]]
	3086	then
	3087	if [[ $files_for_pes = false ]]
	3088	then
	3089	cp $UT/${frelin[$i]} .
	3090	else
	3091	(( inode = 0 ))
	3092	while (( inode < nodes ))
	3093	do
	3094	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	3095	(( inode = inode + 1 ))
	3096	done
	3097	fi
	3098	file_restored=true
	3099	else
	3100	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	3101	locat=rearchive
	3102	exit
	3103	fi
	3104
	3105	if [[ $file_restored = true ]]
	3106	then
	3107
	3108	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	3109	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	3110	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	3111	if [[ $files_for_pes = false ]]
	3112	then
	3113	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	3114	else
	3115	mkdir $tmp_data_catalog/${frelin[$i]}
	3116	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	3117	fi
	3118	got_tmp[$i]=true
	3119
	3120	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	3121	mv ${frelin[$i]} ${localin[$i]}
	3122
	3123	fi
	3124	fi
	3125
	3126
	3127	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	3128	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	3129	then
	3130
	3131	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	3132	then
	3133
	3134	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	3135	printf "\n file will be provided for $numprocs processors"
	3136	mkdir ${localin[$i]}
	3137	ival=$numprocs
	3138	(( ii = 0 ))
	3139	while (( ii <= ival-1 ))
	3140	do
	3141	if (( ii < 10 ))
	3142	then
	3143	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	3144	elif (( ii < 100 ))
	3145	then
	3146	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	3147	elif (( ii < 1000 ))
	3148	then
	3149	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	3150	else
	3151	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	3152	fi
	3153	(( ii = ii + 1 ))
	3154	done
	3155
	3156	else
	3157
	3158	if [[ $files_for_pes = true ]]
	3159	then
	3160
	3161	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	3162	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	3163	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	3164	# PER MOVE UMBENANNT WERDEN
	3165	printf "\n providing $numprocs files for the respective processors"
	3166	mkdir ${localin[$i]}
[183]	3167	if [[ $link_local_input = true ]]
	3168	then
	3169	printf " using ln -f\n"
	3170	cd ${absnamein[$i]}
	3171	for file in $(ls *)
	3172	do
	3173	ln -f $file ${localin[$i]}
	3174	done
	3175	cd $TEMPDIR
	3176	fi
	3177	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	3178	if [[ ! -f "${localin[$i]}/_0000" ]]
	3179	then
	3180	if [[ $link_local_input = true ]]
	3181	then
	3182	printf " ln failed for .../_0000, using cp...\n"
	3183	fi
	3184	cp -r ${absnamein[$i]}/* ${localin[$i]}
	3185	fi
[1]	3186
	3187	else
	3188	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	3189	if [[ $link_local_input = true ]]
	3190	then
	3191	printf " using ln -f\n"
	3192	ln -f ${absnamein[$i]} ${localin[$i]}
	3193	fi
	3194	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	3195	if [[ ! -f "${localin[$i]}" ]]
	3196	then
	3197	if [[ $link_local_input = true ]]
	3198	then
	3199	printf " ln failed, using cp...\n"
	3200	fi
	3201	cp ${absnamein[$i]} ${localin[$i]}
	3202	fi
[1]	3203	fi
	3204	fi
	3205	fi
	3206
	3207	done
	3208	if (( i != 0 ))
	3209	then
	3210	printf "\n$striche\n *** all INPUT-files provided \n"
	3211	fi
	3212
	3213
	3214	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	3215	(( i = 0 ))
	3216	while (( i < iic ))
	3217	do
	3218	(( i = i + 1 ))
	3219	if (( i == 1 ))
	3220	then
	3221	printf "\n\n *** execution of INPUT-commands:\n$striche"
	3222	fi
	3223	printf "\n >>> ${in_command[$i]}"
	3224	eval ${in_command[$i]}
	3225	if (( i == iic ))
	3226	then
	3227	printf "\n$striche\n"
	3228	fi
	3229	done
	3230
	3231
	3232	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	3233	cpurest=${cpumax}.
	3234
	3235
[260]	3236	# START DVR STREAMING SERVER
	3237	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3238	then
	3239	if [[ "$dvr_server" != "" ]]
	3240	then
	3241
	3242	printf "\n\n *** preparing the dvr streaming server configuration file"
	3243
	3244	# Check, if a dvr server is already running
	3245	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	3246	if [[ "$running_dvrserver_id" != "" ]]
	3247	then
	3248
[261]	3249	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	3250	printf "\n This server is used instead starting a new one!"
[261]	3251	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	3252
	3253	else
	3254
	3255	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	3256	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	3257	then
	3258	cp ${PALM_BIN}/.dvrserver.config .
	3259
	3260	# Entering the BASEDIR, UID and GID into this file
	3261	user_id=`id -u`
	3262	group_id=`id -g`
	3263	# & is needed as seperator, because TEMPDIR contains /
	3264	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	3265	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	3266	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	3267	mv .dvrserver.3 .dvrserver.config
	3268	rm .dvrserver.1 .dvrserver.2
	3269
	3270	# Start dvr server in background, get his id and print on terminal
	3271	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	3272	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	3273	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	3274	local_dvrserver_running=.TRUE.
	3275	else
	3276	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	3277	printf "\n \"$PALM_BIN\" "
	3278	locat=dvr
	3279	exit
	3280	fi
	3281
	3282	fi
	3283
	3284	else
	3285	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	3286	fi
	3287	fi
	3288
	3289
	3290	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	3291	# LESEN VON PALM)
	3292	cat > ENVPAR << %%END%%
	3293	&envpar run_identifier = '$fname', host = '$localhost',
	3294	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
[759]	3295	maximum_parallel_io_streams = $maximum_parallel_io_streams,
[260]	3296	maximum_cpu_time_allowed = ${cpumax}.,
	3297	revision = '$global_revision',
	3298	local_dvrserver_running = $local_dvrserver_running /
	3299
	3300	%%END%%
	3301
	3302
[1]	3303	# PROGRAMMSTART
	3304	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	3305	PATH=$PATH:$TEMPDIR
	3306
[359]	3307	# MPI debug option (argument checking, slows down execution due to increased latency)
	3308	if [[ "$mpi_debug" = true ]]
	3309	then
	3310	export MPI_CHECK_ARGS=1
	3311	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	3312	fi
	3313
[693]	3314	if [[ "$totalview" = true ]]
	3315	then
	3316	printf "\n *** totalview debugger will be used"
	3317	tv_opt="-tv"
	3318	else
	3319	tv_opt=""
	3320	fi
	3321
[1]	3322	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	3323	then
	3324	if [[ "$ENVIRONMENT" = BATCH ]]
	3325	then
[211]	3326	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	3327	then
	3328	printf "\n +++ debug is allowed in interactive mode only"
	3329	locat=debug
	3330	exit
	3331	fi
[1]	3332	fi
[1096]	3333	if [[ $localhost = ibmh ]]
[1]	3334	then
	3335
	3336	# SETUP THE IBM MPI ENVIRONMENT
	3337	export MP_SHARED_MEMORY=yes
	3338	export AIXTHREADS_SCOPE=S
	3339	export OMP_NUM_THREADS=$threads_per_task
	3340	export AUTHSTATE=files
	3341	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3342
	3343	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	3344	export MP_ADAPTER_USE=shared
	3345	export MP_CPU_USE=multiple
	3346	export MP_TIMEOUT=1200
	3347
	3348	unset MP_TASK_AFFINITY
	3349
	3350	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	3351	#(( ii = 1 ))
	3352	#while (( ii <= $numprocs ))
	3353	#do
	3354	# echo $localhost_realname >> hostfile
	3355	# (( ii = ii + 1 ))
	3356	#done
	3357	#export MP_HOSTFILE=hostfile
	3358
	3359	if [[ "$LOADLBATCH" = yes ]]
	3360	then
	3361	totalview poe a.out $ROPTS
	3362	else
	3363	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3364	export TVDSVRLAUNCHCMD=ssh
	3365	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3366	fi
[211]	3367	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	3368	then
	3369	# CURRENTLY NO DEBUGGER ON LCSGI
	3370	if [[ $run_coupled_model = true ]]
	3371	then
	3372	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	3373	locat=debug
	3374	exit
[223]	3375	else
	3376	echo "no_coupling" > runfile_atmos
[211]	3377	fi
	3378	(( ii = $numprocs / $threads_per_task ))
	3379	export OMP_NUM_THREADS=$threads_per_task
	3380	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3381	if [[ $threads_per_task != 1 ]]
	3382	then
	3383	printf "\n threads per task: $threads_per_task"
	3384	fi
	3385	printf "\n\n"
[223]	3386	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3387	then
	3388	# export MPI_LAUNCH_TIMEOUT=360
	3389	if [[ "$totalview" = true ]]
	3390	then
	3391	printf "\n running totalview debugger"
[693]	3392	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
[223]	3393	else
	3394	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3395	fi
	3396	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3397	then
	3398	# ulimit -s 300000 # A too large stack size causes problems
	3399	# export MV2_NUM_PORTS=2
	3400	# export MV2_CPU_MAPPING=0:1:2:3
[362]	3401	if [[ "$totalview" = true ]]
	3402	then
	3403	printf "\n running totalview debugger"
[693]	3404	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
[362]	3405	else
	3406	mpiexec ./a.out $ROPTS < runfile_atmos
	3407	fi
[223]	3408	fi
[1]	3409	else
	3410	printf "\n +++ no debug available on \"$localhost\" "
	3411	printf "\n or not implemented in mrun so far"
	3412	locat=debug
	3413	exit
	3414	fi
[622]	3415
	3416	# end debug mode
[1]	3417	else
[622]	3418
	3419	# normal execution
[1]	3420	if [[ -n $numprocs ]]
	3421	then
	3422	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	3423	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	3424	then
	3425	# SETUP THE IBM MPI ENVIRONMENT
[693]	3426	if [[ $host != ibmh && $host != ibmkisti ]]
[312]	3427	then
	3428	export MP_SHARED_MEMORY=yes
	3429	export AIXTHREAD_SCOPE=S
	3430	export OMP_NUM_THREADS=$threads_per_task
	3431	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	3432	export AUTHSTATE=files
	3433	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3434	# export MP_PRINTENV=yes
[1]	3435
[312]	3436	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	3437	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	3438	export MP_WAIT_MODE=poll
	3439	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	3440	fi
[693]	3441
	3442	if [[ $host = ibmkisti ]]
	3443	then
	3444	export LANG=en_US
	3445	export MP_SHARED_MEMORY=yes
[696]	3446	if [[ $threads_per_task = 1 ]]
	3447	then
	3448	export MP_SINGLE_THREAD=yes
	3449	export MEMORY_AFFINITY=MCM
	3450	else
	3451	export OMP_NUM_THREADS=$threads_per_task
	3452	fi
[693]	3453	fi
	3454
[1]	3455	if [[ "$LOADLBATCH" = yes ]]
	3456	then
	3457	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	3458	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3459	then
[102]	3460	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3461	else
[343]	3462	if [[ $run_coupled_model = false ]]
	3463	then
	3464	if [[ "$ocean_file_appendix" = true ]]
	3465	then
	3466	echo "precursor_ocean" > runfile_atmos
	3467	else
	3468	echo "precursor_atmos" > runfile_atmos
	3469	fi
	3470	else
	3471	(( iia = $numprocs_atmos / $threads_per_task ))
	3472	(( iio = $numprocs_ocean / $threads_per_task ))
	3473	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3474	printf "\n using $coupled_mode coupling"
	3475	printf "\n\n"
	3476	echo "coupled_run $iia $iio" > runfile_atmos
	3477	fi
	3478	poe ./a.out $ROPTS < runfile_atmos
[1]	3479	fi
	3480	else
[622]	3481	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
[1]	3482	then
[102]	3483	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[693]	3484	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
[1]	3485	then
	3486	if [[ -f $hostfile ]]
	3487	then
	3488	cp $hostfile hostfile
	3489	else
	3490	(( ii = 1 ))
	3491	while (( ii <= $numprocs ))
	3492	do
	3493	echo $localhost_realname >> hostfile
	3494	(( ii = ii + 1 ))
	3495	done
	3496	fi
	3497	export MP_HOSTFILE=hostfile
[331]	3498	if [[ $run_coupled_model = false ]]
	3499	then
	3500	if [[ "$ocean_file_appendix" = true ]]
	3501	then
	3502	echo "precursor_ocean" > runfile_atmos
	3503	else
	3504	echo "precursor_atmos" > runfile_atmos
	3505	fi
	3506	else
	3507	(( iia = $numprocs_atmos / $threads_per_task ))
	3508	(( iio = $numprocs_ocean / $threads_per_task ))
	3509	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3510	printf "\n using $coupled_mode coupling"
	3511	printf "\n\n"
	3512	echo "coupled_run $iia $iio" > runfile_atmos
	3513	fi
[622]	3514	if [[ $localhost = ibmy ]]
	3515	then
	3516	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3517	else
	3518	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
	3519	fi
[331]	3520
[1]	3521	else
	3522	if [[ "$host_file" = "" ]]
	3523	then
	3524	printf "\n +++ no hostfile given in configuration file"
	3525	locat=config_file
	3526	exit
	3527	else
	3528	eval host_file=$host_file
	3529	fi
	3530	export MP_HOSTFILE=$host_file
[102]	3531	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3532	fi
	3533	fi
[251]	3534	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3535	then
	3536	(( ii = nodes ))
	3537	if [[ $ii = 1 ]]
	3538	then
	3539	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3540	export MPIPROGINF=YES
[61]	3541	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3542	echo "*** execution on single node with mpirun"
[102]	3543	mpirun -np $numprocs ./a.out $ROPTS
[1]	3544	else
	3545	(( i = 0 ))
	3546	while (( i < ii ))
	3547	do
	3548	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3549	(( i = i + 1 ))
	3550	done
	3551
	3552	echo "#!/bin/sh" > mpi_exec_shell
	3553	echo " " >> mpi_exec_shell
	3554	echo "set -u" >> mpi_exec_shell
	3555	echo "F_ERRCNT=0" >> mpi_exec_shell
	3556	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3557	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3558	echo "cpurest=$cpurest" >> mpi_exec_shell
	3559	echo "fname=$fname" >> mpi_exec_shell
	3560	echo "localhost=$localhost" >> mpi_exec_shell
	3561	echo "return_addres=$return_addres" >> mpi_exec_shell
	3562	echo "return_username=$return_username" >> mpi_exec_shell
	3563	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3564	echo "write_binary=$write_binary" >> mpi_exec_shell
	3565	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3566	echo " " >> mpi_exec_shell
	3567	echo "export F_ERRCNT" >> mpi_exec_shell
	3568	echo "export MPIPROGINV" >> mpi_exec_shell
	3569	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3570	echo "export cpurest" >> mpi_exec_shell
	3571	echo "export fname" >> mpi_exec_shell
	3572	echo "export localhost" >> mpi_exec_shell
	3573	echo "export return_addres" >> mpi_exec_shell
	3574	echo "export return_username" >> mpi_exec_shell
	3575	echo "export tasks_per_node" >> mpi_exec_shell
	3576	echo "export write_binary" >> mpi_exec_shell
	3577	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3578	echo " " >> mpi_exec_shell
[102]	3579	echo "exec ./a.out" >> mpi_exec_shell
[1]	3580
	3581	chmod u+x mpi_exec_shell
	3582	export MPIPROGINF=YES
	3583	mpirun -f multinode_config &
	3584	wait
	3585
	3586	fi
[440]	3587	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
[1]	3588	then
	3589
	3590	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3591	# DOES NOT EXIST
[1224]	3592	if [[ $host != lccrayb &&$host != lccrayf && $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
[1]	3593	then
[179]	3594	if [[ -f $hostfile ]]
	3595	then
	3596	cp $hostfile hostfile
[746]	3597	(( ii = $numprocs / $threads_per_task ))
[179]	3598	else
	3599	(( ii = 1 ))
	3600	while (( ii <= $numprocs / $threads_per_task ))
	3601	do
	3602	echo $localhost_realname >> hostfile
	3603	(( ii = ii + 1 ))
	3604	done
	3605	fi
	3606	eval zeile=\"`head -n $ii hostfile`\"
	3607	printf "\n *** running on: $zeile"
[1]	3608	fi
[179]	3609
[1]	3610	(( ii = $numprocs / $threads_per_task ))
	3611	export OMP_NUM_THREADS=$threads_per_task
[696]	3612	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3613	if [[ $threads_per_task != 1 ]]
	3614	then
[405]	3615	# increase stack size to unlimited, because large runs
	3616	# may abort otherwise
	3617	ulimit -Ss unlimited
	3618	printf "\n threads per task: $threads_per_task stacksize: unlimited"
[1]	3619	fi
[102]	3620	if [[ $run_coupled_model = false ]]
[1]	3621	then
[291]	3622	if [[ "$ocean_file_appendix" = true ]]
	3623	then
	3624	echo "precursor_ocean" > runfile_atmos
	3625	else
	3626	echo "precursor_atmos" > runfile_atmos
	3627	fi
[102]	3628	printf "\n\n"
[179]	3629	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3630	then
[221]	3631	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3632	then
[366]	3633	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
	3634	# export MPI_DSM_DISTRIBUTE=1
	3635	# MPI_DSM_CPULIST: pin MPI processes to cores
[377]	3636	if [[ $use_openmp = false ]]
	3637	then
[412]	3638	if [[ "$sgi_feature" = ice2 ]]
	3639	then
	3640	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
	3641	else
	3642	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
	3643	fi
[622]	3644	else
	3645	unset MPI_DSM_CPULIST
[377]	3646	fi
[366]	3647	# MPI_IB_RAILS: use both IB rails on ICE2
	3648	export MPI_BUFS_PER_HOST=512
	3649	export MPI_IB_RAILS=2
[369]	3650	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
	3651	export MPI_CONNECTIONS_THRESHOLD=8192
[738]	3652	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
[562]	3653	export MPI_TYPE_DEPTH=20
[738]	3654	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
[683]	3655	export MPI_GROUP_MAX=64
[738]	3656	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
[693]	3657	if [[ $use_openmp = true ]]
	3658	then
	3659	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
	3660	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
	3661	else
	3662	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
	3663	fi
[388]	3664
	3665	# next is test for openmp usage
[622]	3666	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
	3667	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
[221]	3668	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3669	then
[374]	3670	export MV2_NUM_PORTS=2
[376]	3671	# The default setting of MV2_CPU_MAPPING gives best results
[405]	3672	# export MV2_ENABLE_AFFINITY=1
[376]	3673	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
[412]	3674	# if [[ "$sgi_feature" = ice2 ]]
	3675	# then
	3676	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
	3677	# else
	3678	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
	3679	# fi
[678]	3680	if [[ $use_openmp = true ]]
	3681	then
	3682	unset MV2_CPU_MAPPING
	3683	export MV2_ENABLE_AFFINITY=0
	3684	fi
[412]	3685	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
[678]	3686	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
[622]	3687	if [[ $use_openmp = true ]]
[405]	3688	then
[678]	3689	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
[693]	3690	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
[405]	3691	else
[693]	3692	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
[405]	3693	fi
[738]	3694	elif [[ "$mpilib" = impi ]]
	3695	then
[1058]	3696	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
	3697	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
[221]	3698	fi
[1224]	3699	elif [[ $host = lccrayb ]]
	3700	then
	3701	echo "--- aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos"
	3702	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
	3703	# aprun -n $ii -ss -r2 -j1 a.out $ROPTS < runfile_atmos
[1197]	3704	elif [[ $host = lccrayf ]]
	3705	then
	3706	aprun -n $ii -N $tasks_per_node -m ${memory}M a.out $ROPTS < runfile_atmos
[892]	3707	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
[179]	3708	then
[544]	3709	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[755]	3710	elif [[ $host = lcflow ]]
	3711	then
[1201]	3712	mpirun -bootstrap sge -np $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
[1021]	3713	elif [[ $host = lcsb ]]
	3714	then
	3715	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
[1040]	3716	elif [[ $host = lckiaps ]]
	3717	then
	3718	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
[1090]	3719	elif [[ $host = lckyu* ]]
	3720	then
[1106]	3721	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
[164]	3722	else
[1106]	3723	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3724	fi
[1]	3725	else
[164]	3726
[206]	3727	# currently there is no full MPI-2 support on ICE and XT4
	3728	(( iia = $numprocs_atmos / $threads_per_task ))
	3729	(( iio = $numprocs_ocean / $threads_per_task ))
	3730	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3731	printf "\n using $coupled_mode coupling"
[102]	3732	printf "\n\n"
[164]	3733
[206]	3734	if [[ $coupled_mode = "mpi2" ]]
[164]	3735	then
[206]	3736	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3737	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3738	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3739	then
[197]	3740
[221]	3741	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3742	then
	3743	# export MPI_LAUNCH_TIMEOUT=360
	3744	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3745	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3746	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3747	then
	3748	# ulimit -s 300000 # A too large stack size causes problems
	3749	# export MV2_NUM_PORTS=2
	3750	# export MV2_CPU_MAPPING=0:1:2:3
	3751	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3752	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3753	fi
[197]	3754
[1197]	3755	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
[206]	3756	then
[197]	3757
[206]	3758	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3759	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3760
	3761	else
	3762	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3763	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3764	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3765	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3766	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3767	fi
	3768	wait
	3769
[164]	3770	else
	3771
[206]	3772	echo "coupled_run $iia $iio" > runfile_atmos
	3773	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3774	then
	3775
[221]	3776	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3777	then
	3778	# export MPI_LAUNCH_TIMEOUT=360
	3779	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3780	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3781	then
	3782	# ulimit -s 300000 # A too large stack size causes problems
	3783	# export MV2_NUM_PORTS=2
	3784	# export MV2_CPU_MAPPING=0:1:2:3
	3785	mpiexec ./a.out $ROPTS < runfile_atmos
	3786	fi
[206]	3787
[1197]	3788	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
[206]	3789	then
	3790
	3791	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3792
[718]	3793	elif [[ $host = lck \|\| $host = lckordi ]]
[367]	3794	then
[1108]	3795
	3796	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
	3797
	3798	elif [[ $host = lckyu* ]]
	3799	then
	3800
	3801	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
	3802
[206]	3803	fi
	3804	wait
[164]	3805	fi
[102]	3806
[206]	3807	fi
[440]	3808	elif [[ $host = lckyoto ]]
	3809	then
	3810	set -xv
	3811	export P4_RSHCOMMAND=plesh
	3812	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
	3813	if [[ "$ENVIRONMENT" = BATCH ]]
	3814	then
[505]	3815	if [[ "$cond2" = fujitsu ]]
	3816	then
	3817	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
	3818	elif [[ "cond2" = pgi ]]
	3819	then
	3820	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
	3821	else
	3822	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
	3823	fi
[440]	3824	else
[505]	3825	if [[ "$cond2" = "" ]]
	3826	then
	3827	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
	3828	else
	3829	mpirun -np $numprocs ./a.out $ROPTS
	3830	fi
[440]	3831	fi
	3832	set +xv
[1]	3833	elif [[ $host = lctit ]]
	3834	then
[678]	3835	export OMP_NUM_THREADS=$threads_per_task
	3836	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3837	if [[ "$threads_per_task" != 1 ]]
	3838	then
	3839	export MV2_ENABLE_AFFINITY=0
	3840	fi
	3841	echo "----- PBS_NODEFILE content:"
	3842	cat $PBS_NODEFILE
	3843	echo "-----"
	3844	(( ii = $numprocs / $threads_per_task ))
	3845	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
	3846	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
[1]	3847	else
[102]	3848	mpprun -n $numprocs a.out $ROPTS
[1]	3849	fi
	3850	[[ $? != 0 ]] && execution_error=true
	3851
	3852
	3853	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3854	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3855	then
	3856	apprentice
	3857	fi
	3858	else
[102]	3859	a.out $ROPTS
[1]	3860	fi
	3861	fi
	3862	if [[ $? != 0 \|\| $execution_error = true ]]
	3863	then
	3864
	3865	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3866	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3867	printf "\n +++ runtime error occured"
	3868	locat=execution
	3869	exit
	3870	else
[102]	3871	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3872	printf "\n$striche\n *** execution finished \n"
[260]	3873
[261]	3874	# Stop the dvr streaming server and process the dvr output in order
	3875	# to create dvrs- and html-files containing all streams
[260]	3876	if [[ "$dvrserver_id" != "" ]]
	3877	then
	3878	kill $dvrserver_id
	3879	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3880
[262]	3881	# If there is a directory, data have been output by the
	3882	# streaming server. Otherwise, user has chosen dvrp_output=local
	3883	if [[ -d DATA_DVR ]]
	3884	then
[261]	3885
[262]	3886	# Add the current dvr configuration file to the dvr output
	3887	# directory
	3888	cp .dvrserver.config DATA_DVR
	3889
	3890	# Process the dvr output (option -s for also generating
	3891	# sequence mode data)
	3892	process_dvr_output -d DATA_DVR -f $fname -s
	3893
	3894	else
	3895
	3896	# Process the local output
	3897	process_dvr_output -l -d DATA_DVR -f $fname
	3898
	3899	fi
	3900
	3901	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3902	then
	3903
	3904	# Process dvr output generated in local mode (dvrp_output=local)
	3905	process_dvr_output -l -d DATA_DVR -f $fname
	3906
[260]	3907	fi
[1]	3908	fi
	3909
	3910
	3911
[503]	3912	# Call of combine_plot_fields in order to merge single files written
	3913	# by each PE into one file.
[920]	3914	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
	3915	then
	3916	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
	3917	printf "\n 2d- and/or 3d-data may be incomplete!"
	3918	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
	3919	elif [[ "$combine_plot_fields" == true ]]
	3920	then
	3921	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
	3922	combine_plot_fields${block}.x
	3923	else
	3924	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
	3925	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
	3926	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
	3927	fi
[503]	3928
	3929
	3930
[1]	3931	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3932	(( i = 0 ))
	3933	while (( i < ioc ))
	3934	do
	3935	(( i = i + 1 ))
	3936	if (( i == 1 ))
	3937	then
	3938	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3939	fi
	3940	printf "\n >>> ${out_command[$i]}"
	3941	eval ${out_command[$i]}
	3942	if (( i == ioc ))
	3943	then
	3944	printf "\n$striche\n"
	3945	fi
	3946	done
	3947
	3948
	3949	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3950	if [[ $do_trace = true ]]
	3951	then
	3952	printf "\n\n"
	3953	ls -al
	3954	fi
	3955
	3956
	3957
	3958	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3959	(( i = 0 ))
	3960	while (( i < iout ))
	3961	do
	3962	(( i = i + 1 ))
	3963	if (( i == 1 ))
	3964	then
	3965	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3966	fi
	3967
	3968	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3969	files_for_pes=false; filetyp=file
	3970	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3971	then
	3972	files_for_pes=true; filetyp=directory
	3973	actionout[$i]=""
	3974	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3975	then
	3976	actionout[$i]=""
	3977	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3978	then
	3979	files_for_pes=true; filetyp=directory
	3980	actionout[$i]="ar"
	3981	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3982	then
	3983	actionout[$i]="ar"
	3984	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3985	then
	3986	files_for_pes=true; filetyp=directory
	3987	actionout[$i]="fl"
	3988	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3989	then
	3990	actionout[$i]="fl"
	3991	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3992	then
	3993	files_for_pes=true; filetyp=directory
	3994	actionout[$i]="tr"
	3995	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3996	then
	3997	actionout[$i]="tr"
	3998	fi
	3999
	4000	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	4001	then
	4002	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	4003	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	4004	then
	4005	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	4006	else
	4007
	4008
	4009	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	4010	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	4011	# REMOTE-RECHNUNGEN
	4012	if [[ "${actionout[$i]}" = tr ]]
	4013	then
	4014	if [[ $localhost != $fromhost ]]
	4015	then
	4016	if [[ $files_for_pes = false ]]
	4017	then
	4018	cps=""
	4019	cst=""
	4020	else
	4021	cps=-c
	4022	cst="/"
	4023	fi
[622]	4024	if [[ $localhost = nech ]]
[1]	4025	then
	4026
	4027	# TRANSFER IN EIGENSTAENDIGEM JOB
	4028	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	4029	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	4030	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	4031	if [[ $files_for_pes = false ]]
	4032	then
	4033	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	4034	else
	4035	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	4036	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	4037	fi
	4038
	4039	echo "set -x" > transfer_${localout[$i]}
	4040	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	4041
	4042	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	4043	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	4044	printf "\n or higher cycle\n"
[1094]	4045	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
[82]	4046
[1]	4047	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	4048
	4049	if [[ $localhost = nech ]]
	4050	then
[1094]	4051	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
[1]	4052	else
	4053	if [[ "$LOGNAME" = b323013 ]]
	4054	then
[1094]	4055	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	4056	else
[1094]	4057	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	4058	fi
	4059	fi
	4060
	4061	else
	4062
	4063	# TRANSFER INNERHALB DIESES JOBS
	4064	transfer_failed=false
[82]	4065	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	4066	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
[1094]	4067	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
[82]	4068	[[ $? != 0 ]] && transfer_failed=true
[1]	4069
	4070	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	4071	# LOKALER MASCHINE ANLEGEN
	4072	if [[ $transfer_failed = true ]]
	4073	then
	4074	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	4075	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	4076
	4077	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	4078	# ANLEGEN.
	4079	eval local_catalog=${pathout[$i]}
	4080	if [[ ! -d $local_catalog ]]
	4081	then
	4082	printf " *** local directory does not exist. Trying to create:\n"
	4083	printf " $local_catalog \n"
	4084	mkdir -p $local_catalog
	4085	fi
	4086	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	4087	transfer_problems=true
	4088	fi
	4089	fi
	4090	else
	4091
	4092	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	4093	actionout[$i]=""
	4094	fi
	4095	fi
	4096
	4097
	4098	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	4099	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	4100	# REMOTE-RECHNUNGEN
	4101	if [[ "${actionout[$i]}" = tra ]]
	4102	then
	4103	if [[ $localhost != $fromhost ]]
	4104	then
[622]	4105	if [[ $localhost = ibmh \|\| $localhost = nech ]]
[1]	4106	then
	4107
	4108	# TRANSFER IN EIGENSTAENDIGEM JOB
	4109	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	4110	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	4111	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	4112	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	4113
	4114	echo "set -x" > transfer_${localout[$i]}
	4115	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	4116
	4117	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	4118	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	4119	printf "\n or higher cycle\n"
[1094]	4120	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
[82]	4121
[1]	4122	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	4123
	4124	if [[ $localhost = nech ]]
	4125	then
[1094]	4126	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
[1]	4127	else
	4128	if [[ $LOGNAME = b323013 ]]
	4129	then
[1094]	4130	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	4131	else
[1094]	4132	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	4133	fi
	4134	fi
	4135
	4136	else
	4137
	4138	# TRANSFER INNERHALB DIESES JOBS
	4139	transfer_failed=false
[82]	4140	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	4141	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
[1094]	4142	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
[82]	4143	[[ $? != 0 ]] && transfer_failed=true
[1]	4144
	4145	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	4146	# LOKALER MASCHINE ANLEGEN
	4147	if [[ $transfer_failed = true ]]
	4148	then
	4149	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	4150	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	4151
	4152	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	4153	# ANLEGEN
	4154	eval local_catalog=${pathout[$i]}
	4155	if [[ ! -d $local_catalog ]]
	4156	then
	4157	printf " *** local directory does not exist. Trying to create:\n"
	4158	printf " $local_catalog \n"
	4159	mkdir -p $local_catalog
	4160	fi
	4161
	4162	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	4163	transfer_problems=true
	4164	fi
	4165	fi
	4166	else
	4167
	4168	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	4169	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	4170	actionout[$i]=a
	4171	fi
	4172	fi
	4173
	4174
	4175	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	4176	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	4177	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	4178	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	4179	if [[ "${actionout[$i]}" = fl ]]
	4180	then
	4181	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4182	chmod g+rx $tmp_data_catalog
	4183	if [[ $files_for_pes = false ]]
	4184	then
	4185	printf "\n >>> OUTPUT: ${localout[$i]} to"
	4186	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	4187	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	4188	else
	4189	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	4190	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	4191	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	4192	cd ${localout[$i]}
	4193	for file in $(ls *)
	4194	do
	4195	ln -f $file $tmp_data_catalog/${frelout[$i]}
	4196	done
	4197	cd $TEMPDIR
[1]	4198	fi
	4199
	4200
	4201	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	4202	if [[ $store_on_archive_system = true ]]
	4203	then
	4204
	4205	if [[ $archive_system = asterix ]]
	4206	then
	4207	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4208	if [[ $files_for_pes = false ]]
	4209	then
	4210	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4211	else
	4212	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4213	fi
	4214	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4215	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	4216	echo "then" >> archive_${frelout[$i]}
	4217	echo " do_stageout=false" >> archive_${frelout[$i]}
	4218	echo "else" >> archive_${frelout[$i]}
	4219	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	4220	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	4221	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	4222	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	4223	if [[ $files_for_pes = false ]]
	4224	then
	4225	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	4226	else
	4227	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	4228	fi
	4229	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	4230	echo "fi" >> archive_${frelout[$i]}
	4231	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4232	elif [[ $archive_system = DMF ]]
	4233	then
	4234	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4235	if [[ $files_for_pes = false ]]
	4236	then
	4237	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	4238	locat=DMF
	4239	exit
	4240	else
	4241	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	4242	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	4243	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	4244	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	4245	fi
	4246	elif [[ $archive_system = tivoli ]]
	4247	then
	4248	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4249	if [[ $files_for_pes = false ]]
	4250	then
	4251	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4252	echo "set -x" >> archive_${frelout[$i]}
	4253	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4254	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4255	else
	4256
	4257	echo "set -x" >> archive_${frelout[$i]}
	4258	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	4259	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4260	cd $tmp_data_catalog
	4261	all_files=`ls -1 ${frelout[$i]}/*`
	4262	cd - > /dev/null
	4263	(( inode = 0 ))
	4264	(( tp1 = tasks_per_node + 1 ))
	4265	while (( inode < nodes ))
	4266	do
	4267	# echo "*** all_files = \"$all_files\" "
	4268	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	4269	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	4270	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	4271	# echo "*** files = \"$files\" "
	4272	# echo "*** all_files = \"$all_files\" "
[416]	4273	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4274	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4275	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
	4276	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[397]	4277	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	4278	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[1]	4279	(( inode = inode + 1 ))
	4280	done
	4281	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4282	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4283	fi
	4284	elif [[ $archive_system = ut ]]
	4285	then
	4286	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4287	if [[ $files_for_pes = false ]]
	4288	then
	4289	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4290	echo "set -x" >> archive_${frelout[$i]}
	4291	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4292	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4293	else
	4294
	4295	echo "set -x" >> archive_${frelout[$i]}
	4296	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	4297	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4298	cd $tmp_data_catalog
	4299	all_files=`ls -1 ${frelout[$i]}/*`
	4300	cd - > /dev/null
	4301	(( inode = 0 ))
	4302	(( tp1 = tasks_per_node + 1 ))
	4303	while (( inode < nodes ))
	4304	do
	4305	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	4306	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	4307	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4308	(( inode = inode + 1 ))
	4309	done
	4310	fi
	4311	elif [[ $archive_system = none ]]
	4312	then
	4313	printf " +++ archiving on $localhost not available!\n"
	4314	fi
	4315
	4316	if [[ $archive_system != none ]]
	4317	then
[399]	4318	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
[1]	4319	then
[1094]	4320	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
	4321	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
[1]	4322	elif [[ $localhost = nech ]]
	4323	then
[1094]	4324	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
[1]	4325	fi
	4326	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4327	fi
	4328	else
[399]	4329	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
[1]	4330	fi
	4331
	4332
	4333	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	4334	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	4335	if [[ $files_for_pes = false ]]
	4336	then
	4337	cat /dev/null > ${pathout[$i]}
	4338	else
	4339	mkdir -p ${pathout[$i]}
	4340	fi
	4341
	4342	fi
	4343
	4344
	4345	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	4346	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	4347	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	4348	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	4349	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	4350	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	4351	if [[ "${actionout[$i]}" = ar ]]
	4352	then
	4353	if [[ $files_for_pes = false ]]
	4354	then
	4355	printf "\n >>> OUTPUT: ${localout[$i]} to"
	4356	printf "\n ${pathout[$i]}"
	4357	printf "\n File will be copied to archive-system ($archive_system) !\n"
	4358	else
	4359	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	4360	printf "\n ${pathout[$i]}"
	4361	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	4362	fi
	4363	mv ${localout[$i]} ${frelout[$i]}
	4364
	4365	file_saved=false
	4366
	4367	if [[ $archive_system = asterix ]]
	4368	then
	4369	do_stageout=true
	4370	(( stageout_anz = 0 ))
	4371	while [[ $do_stageout = true ]]
	4372	do
	4373	if [[ $files_for_pes = false ]]
	4374	then
	4375	stageout ${frelout[$i]} > STAGE_OUTPUT
	4376	else
	4377	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	4378	fi
	4379	cat STAGE_OUTPUT
	4380	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	4381	then
	4382	file_saved=true
	4383	do_stageout=false
	4384	else
	4385	if [[ $files_for_pes = false ]]
	4386	then
	4387	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	4388	else
	4389	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	4390	fi
	4391	(( stageout_anz = stageout_anz + 1 ))
	4392	if (( stageout_anz == 10 ))
	4393	then
	4394	printf "\n +++ stoped after 10 unsuccessful tries!"
	4395	archive_save=false
	4396	do_stageout=false
	4397	else
	4398	printf "\n *** new try to store on archive after 15 min:"
	4399	sleep 900
	4400	fi
	4401	fi
	4402	done
	4403	elif [[ $archive_system = DMF ]]
	4404	then
	4405	if [[ $files_for_pes = false ]]
	4406	then
	4407	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	4408	locat=DMF
	4409	exit
	4410	else
	4411	rm -rf $ARCHIVE/${frelout[$i]}
	4412	cp -r ${frelout[$i]} $ARCHIVE
	4413	fi
	4414	file_saved=true
	4415	elif [[ $archive_system = tivoli ]]
	4416	then
	4417	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4418	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4419	# GELEGT WERDEN
	4420	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4421	chmod g+rx $tmp_data_catalog
	4422	if [[ $files_for_pes = false ]]
	4423	then
	4424	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4425	else
	4426	mkdir $tmp_data_catalog/${frelout[$i]}
	4427	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4428	fi
	4429
	4430	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4431	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4432	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4433	if [[ $files_for_pes = false ]]
	4434	then
	4435	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4436	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4437	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4438	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4439	else
	4440	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4441	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4442	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4443	fi
	4444
[1094]	4445	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
[1]	4446	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4447	file_saved=true
	4448
	4449	elif [[ $archive_system = ut ]]
	4450	then
	4451	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4452	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4453	# GELEGT WERDEN
	4454	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4455	chmod g+rx $tmp_data_catalog
	4456	if [[ $files_for_pes = false ]]
	4457	then
	4458	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4459	else
	4460	mkdir $tmp_data_catalog/${frelout[$i]}
	4461	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4462	fi
	4463
	4464	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4465	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4466	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4467	if [[ $files_for_pes = false ]]
	4468	then
	4469	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4470	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4471	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4472	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4473	else
	4474	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4475	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4476	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4477	fi
	4478
[1094]	4479	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
[1]	4480	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4481	file_saved=true
	4482
	4483	else
	4484	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	4485	archive_save=false
	4486	fi
	4487	if [[ $file_saved = true ]]
	4488	then
	4489	if [[ $files_for_pes = false ]]
	4490	then
	4491	cat /dev/null > ${pathout[$i]}
	4492	else
	4493	mkdir -p ${pathout[$i]}
	4494	fi
	4495	fi
	4496	fi
	4497
	4498	# APPEND AUF LOKALER MASCHINE
	4499	if [[ "${actionout[$i]}" = "a" ]]
	4500	then
[741]	4501	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
	4502	then
	4503	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
	4504	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
	4505	else
	4506	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	4507	cat ${localout[$i]} >> ${pathout[$i]}
	4508	fi
[1]	4509	fi
	4510
	4511	# KOPIEREN AUF LOKALER MASCHINE
	4512	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	4513	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	4514	then
	4515
	4516	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	4517	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	4518	then
	4519	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	4520	if [[ $link_local_output = true ]]
	4521	then
	4522	printf " using ln -f\n"
	4523	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4524	fi
	4525	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4526	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	4527	then
	4528	if [[ $link_local_output = true ]]
	4529	then
	4530	printf " ln failed, using cp...\n"
	4531	fi
	4532	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4533	fi
[1]	4534	else
	4535	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	4536	if [[ $link_local_output = true ]]
	4537	then
	4538	printf " using ln -f\n"
	4539	ln -f ${localout[$i]} ${pathout[$i]}
	4540	fi
	4541	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4542	if [[ ! -f "${pathout[$i]}" ]]
	4543	then
	4544	if [[ $link_local_output = true ]]
	4545	then
	4546	printf " ln failed, using cp...\n"
	4547	fi
	4548	cp ${localout[$i]} ${pathout[$i]}
	4549	fi
[1]	4550	fi
	4551
	4552	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	4553	then
	4554
	4555	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	4556	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	4557	# WIRD DANN KOPIERT
	4558	# PER MOVE UMBENANNT WERDEN
	4559	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	4560	if [[ $link_local_output = true ]]
	4561	then
	4562	printf " using ln -f\n"
	4563	mkdir ${pathout[$i]}
	4564	cd ${localout[$i]}
	4565	for file in $(ls *)
	4566	do
	4567	ln -f $file ${pathout[$i]}
	4568	done
	4569	cd $TEMPDIR
	4570	fi
	4571	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	4572	if [[ ! -f "${pathout[$i]}/_0000" ]]
	4573	then
	4574	if [[ $link_local_output = true ]]
	4575	then
	4576	printf " ln failed for .../_0000, using cp...\n"
	4577	fi
	4578	cp -r ${localout[$i]} ${pathout[$i]}
	4579	fi
[1]	4580
	4581	fi
	4582	fi
	4583	done
	4584	if (( i != 0 ))
	4585	then
	4586	if [[ $transfer_problems = true ]]
	4587	then
	4588	printf "\n$striche\n *** OUTPUT-files saved"
	4589	printf "\n +++ WARNING: some data transfers failed! \n"
	4590	else
	4591	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4592	fi
	4593	fi
	4594
	4595
	4596	# EVENTUELL FOLGEJOB STARTEN
	4597	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4598	if [[ -f CONTINUE_RUN ]]
	4599	then
	4600
	4601	if [[ $archive_save = true ]]
	4602	then
	4603
	4604	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4605	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4606	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4607	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4608	# HANDEN
	4609	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4610	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4611	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4612	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4613	then
	4614	mc=`echo $mc \| sed 's/#/f/g'`
	4615	fi
	4616
	4617
	4618	# JOB STARTEN
	4619	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4620	echo " $mc"
	4621	printf "\n$striche\n"
	4622	if [[ $localhost != $fromhost ]]
	4623	then
	4624
[1099]	4625	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
[1]	4626	then
	4627	echo "*** ssh will be used to initiate restart-runs!"
	4628	echo " return_addres=\"$return_addres\" "
	4629	echo " return_username=\"$return_username\" "
[635]	4630	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
[1]	4631	then
[1190]	4632	if [[ $localhost = ibmh ]]
	4633	then
	4634	ssh $SSH_PORTOPT $usern@136.172.40.15 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
	4635	else
	4636	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4637	fi
[1]	4638	else
[693]	4639	if [[ $localhost = ibmkisti ]]
	4640	then
[1094]	4641	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
[693]	4642	else
[1201]	4643	if [[ $localhost = lcflow ]]
	4644	then
	4645	/usr/bin/ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4646	else
	4647	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4648	fi
[693]	4649	fi
[1]	4650	fi
	4651	else
	4652	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4653	locat=restart; exit
	4654	fi
	4655
	4656	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4657	# DER AKTUELLE JOB ENDET
[399]	4658	if [[ $queue = special1q ]]
	4659	then
	4660	sleep 120
	4661	else
	4662	sleep 30
	4663	fi
[1]	4664
	4665	else
	4666
	4667	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4668	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4669	cd $LOCAL_PWD
[108]	4670	if [[ $localhost = lcfimm ]]
	4671	then
[1094]	4672	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1103]	4673	elif [[ $localhost = lckyuh ]]
	4674	then
	4675	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
	4676	printf "\n please restart job manually using command:\n"
	4677	printf "\n \"$mc\" "
[108]	4678	else
	4679	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4680	fi
[1]	4681	cd - > /dev/null
	4682	fi
[1103]	4683	if [[ $localhost = lckyuh ]]
	4684	then
	4685	printf "\n$striche\n *** restart-run to be initiated manually\n"
	4686	else
	4687	printf "\n$striche\n *** restart-run initiated \n"
	4688	fi
[1]	4689
	4690
	4691	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4692	# GEHOLT WORDEN SIND, LOESCHEN
	4693	(( i = 0 ))
	4694	while (( i < iin ))
	4695	do
	4696	(( i = i + 1 ))
	4697	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4698	then
	4699	rm -r $tmp_data_catalog/${frelin[$i]}
	4700	fi
	4701	done
	4702
	4703	else
	4704
	4705	printf "\n +++ no restart-run possible, since errors occured"
	4706	printf "\n during the archive process"
	4707	fi
	4708
	4709	fi
	4710
	4711
	4712
	4713	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4714	if [[ "$email_notification" != "none" ]]
[1]	4715	then
	4716
	4717	if [[ $localhost != $fromhost ]]
	4718	then
	4719	if [[ -f CONTINUE_RUN ]]
	4720	then
	4721	echo "PALM restart run necessary" > email_text
	4722	echo "description header of actual run:" >> email_text
	4723	cat CONTINUE_RUN >> email_text
	4724	echo "mrun-command to restart:" >> email_text
	4725	echo "$mc" >> email_text
	4726	else
	4727	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4728	fi
	4729	mail $email_notification < email_text
	4730	printf "\n *** email notification sent to \"$email_notification\" "
	4731	fi
	4732	fi
	4733
	4734
	4735
	4736	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4737	cd $HOME
	4738	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4739
	4740	else
	4741
	4742
	4743	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4744	# CHENDE AKTIONEN DURCHGEFUEHRT
	4745
	4746	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[821]	4747	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	4748	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4749	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4750	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4751	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4752	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4753	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4754	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4755	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4756	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4757	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4758	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4759	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4760	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4761	if [[ $use_openmp = true ]]
	4762	then
[622]	4763	mrun_com=${mrun_com}" -O $threads_per_task"
[1]	4764	fi
[759]	4765	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
[397]	4766	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
[1]	4767	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4768	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4769	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4770	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4771	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4772	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[920]	4773	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
	4774	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
[759]	4775	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
[1]	4776	if [[ $do_remote = true ]]
	4777	then
	4778	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4779	fi
	4780
	4781
[1199]	4782	# create executable for batch job
	4783	if [[ $create_executable_for_batch = true && $restart_run != true ]]
	4784	then
	4785
	4786	printf "\n *** creating the executable for batch job\n"
	4787
	4788	# method only works for batch jobs on local hosts
	4789	if [[ $host != $localhost ]]
	4790	then
	4791	printf "\n +++ creation of executables is only allowed for batch jobs on local hosts."
	4792	printf "\n Please set create_executable_for_batch = false in the config-file.\n"
	4793	locat=create_executable; exit
	4794	fi
	4795
	4796	mkdir $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
	4797	cd $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
	4798
	4799	cp $make_depository .
	4800	tar -xf $make_depository > /dev/null 2>&1
	4801	cp ../* . > /dev/null 2>&1
	4802
	4803	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	4804
	4805	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	4806	then
	4807	printf "\n +++ error occured while compiling or linking"
	4808	locat=compile
	4809	exit
	4810	fi
	4811
	4812	mv a.out ..
	4813	cd - > /dev/null 2>&1
	4814	rm -rf $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
	4815
	4816	printf " *** executable created in \"$working_directory/SOURCES_FOR_RUN_${fname}\"\n "
	4817
	4818	fi
	4819
	4820
[1]	4821	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4822	jobfile=jobfile.$RANDOM
	4823
	4824
	4825	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4826	echo "mkdir $TEMPDIR" >> $jobfile
	4827	echo "cd $TEMPDIR" >> $jobfile
	4828
	4829
	4830	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4831	if [[ $do_trace = true ]]
	4832	then
	4833	echo "set -x" >> $jobfile
	4834	else
	4835	echo "set +vx" >> $jobfile
	4836	fi
	4837
	4838
[1043]	4839	# initialize the environment and load modules
	4840	if [[ "$init_cmds" != "" ]]
	4841	then
	4842	echo "$init_cmds" >> $jobfile
	4843	fi
	4844	if [[ "$module_calls" != "" ]]
	4845	then
	4846	echo "$module_calls" >> $jobfile
	4847	fi
	4848
	4849
[191]	4850	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4851	# DATEI FUER DEN JOB
[1224]	4852	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti \|\| $host = lccrayb \|\| $host = lccrayf ]]
[1]	4853	then
	4854
[191]	4855	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4856	# KOPIEREN
	4857	if [[ $restart_run != true ]]
	4858	then
	4859	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4860	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4861	fi
[1]	4862
[191]	4863	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[693]	4864	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
[193]	4865	echo "set -x" >> $jobfile
[693]	4866	if [[ $host = $localhost ]]
	4867	then
[1199]	4868
	4869	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
	4870	# FILES ON CRAY XC30 SYSTEMS (CSC HELSINKI), rsync IS USED INSTEAD
	4871	echo "rsync -ae -t $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4872
[693]	4873	else
	4874	if [[ $host != ibmkisti ]]
	4875	then
[1094]	4876	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
[693]	4877	else
	4878	# on KISTI's IBM firewall is only opened on interactive node
	4879	echo "localdir=\`pwd\`" >> $jobfile
[1094]	4880	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
[693]	4881	fi
	4882	fi
[193]	4883	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4884
[193]	4885	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4886	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4887	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4888	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
[1199]	4889	echo "chmod u+rwx $mrun_script_name" >> $jobfile
[193]	4890	echo "execute_mrun=true" >> $jobfile
	4891	echo " " >> $jobfile
	4892
[191]	4893	else
	4894
	4895	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4896	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4897	if [[ $do_compile = true ]]
	4898	then
	4899
	4900	source_catalog=SOURCES_FOR_RUN_$fname
	4901
	4902	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4903	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4904	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4905	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4906	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4907	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4908
	4909	for filename in $source_list
	4910	do
	4911	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4912	echo "cat > $filename << \"%END%\"" >> $jobfile
	4913	cat $source_catalog/$filename >> $jobfile
	4914	echo " " >> $jobfile
	4915	echo "%END%" >> $jobfile
	4916	echo " " >> $jobfile
	4917	done
	4918
[1]	4919	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4920	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4921	cat $source_catalog/Makefile >> $jobfile
[1]	4922	echo " " >> $jobfile
	4923	echo "%END%" >> $jobfile
	4924	echo " " >> $jobfile
	4925
[191]	4926	echo "cd - > /dev/null" >> $jobfile
[1]	4927
[191]	4928	fi
[1]	4929
	4930
[191]	4931	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4932	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[1099]	4933	# Lines with #$ coming from the svn keyword substitution are
	4934	# removed from the config file in order to avoid problems
	4935	# with the SGE batch system
[191]	4936	echo "cat > $config_file << \"%END%\"" >> $jobfile
[1101]	4937	if [[ $host = lckyuh ]]
	4938	then
	4939	# no cross compiler on compute node
	4940	sed 's/frtpx/frt/g' $config_file >> $jobfile
	4941	else
	4942	sed 's/#$.*//g' $config_file >> $jobfile
	4943	fi
[191]	4944	echo "%END%" >> $jobfile
	4945	echo " " >> $jobfile
[1]	4946
	4947
[191]	4948	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4949	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[1101]	4950	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
[1103]	4951	if [[ $host = lckyuh ]]
	4952	then
	4953	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
	4954	else
	4955	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4956	fi
[1101]	4957	echo "%END%" >> $jobfile
[191]	4958	echo "chmod u+x $mrun_script_name" >> $jobfile
	4959	echo "execute_mrun=true" >> $jobfile
	4960	echo " " >> $jobfile
[1]	4961
	4962	fi
	4963
[191]	4964
[1]	4965	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4966	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4967	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4968	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4969	if [[ $do_remote = true ]]
	4970	then
	4971	(( i = 0 ))
	4972	while (( i < iin ))
	4973	do
	4974	(( i = i + 1 ))
	4975	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4976	if [[ "${transin[$i]}" = job ]]
	4977	then
	4978	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4979	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4980	echo " " >> $jobfile
	4981	echo "%END%" >> $jobfile
	4982	else
[1094]	4983	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4984	fi
	4985
	4986	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4987	echo "if [[ \$? = 1 ]]" >> $jobfile
	4988	echo "then" >> $jobfile
	4989	echo " echo \" \" " >> $jobfile
	4990	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4991	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4992	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4993	echo " execute_mrun=false" >> $jobfile
	4994	echo "fi" >> $jobfile
	4995	done
	4996	fi
	4997
	4998	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4999	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	5000	echo "LOCAL_PWD=$working_directory" >> $jobfile
	5001	echo "export LOCAL_PWD" >> $jobfile
	5002
	5003	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	5004	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	5005	echo "export LOCAL_MRUN_PATH" >> $jobfile
	5006
[66]	5007	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	5008	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	5009	then
	5010	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
[1099]	5011	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
	5012	then
	5013	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
	5014	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
[66]	5015	fi
[1]	5016
[693]	5017	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
[1101]	5018	echo "set -x" >> $jobfile
	5019	echo "queue=$queue" >> $jobfile
[1]	5020	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
[1101]	5021	echo 'ls -al; echo `pwd`' >> $jobfile
	5022	echo "cd \$HOME" >> $jobfile
	5023	echo "rm -rf $TEMPDIR" >> $jobfile
[1]	5024
	5025
	5026
	5027
	5028	# JOB PER SUBJOB STARTEN
	5029	if [[ $silent = false ]]
	5030	then
	5031	printf "\n "
	5032	else
	5033	printf "\n\n"
	5034	fi
	5035
[1094]	5036	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
[1]	5037	rm -rf $jobfile
	5038
	5039
	5040	fi # ENDE REMOTE-TEIL
	5041
	5042
	5043
	5044	# ENDE DER PROZEDUR

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |