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source: palm/trunk/SCRIPTS/mrun @ 1241

Last change on this file since 1241 was 1241, checked in by heinze, 10 years ago
Nudging and large scale forcing from external file implemented
Property svn:keywords set to `Id Rev`
File size: 186.3 KB

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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	# Enable use of nudging input and input of large scale forcing from
25	# external files
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: mrun 1241 2013-10-30 11:36:58Z heinze $
30	#
31	# 1229 2013-09-20 06:55:19Z raasch
32	# further adjustments for lccrayb
33	#
34	# 1224 2013-09-16 07:27:23Z raasch
35	# first adjustments for lccrayb
36	#
37	# 1210 2013-08-14 10:58:20Z raasch
38	# fftw support added
39	#
40	# 1201 2013-07-10 16:17:59Z witha
41	# adjustments for Forwind cluster (lcflow)
42	#
43	# 1199 2013-07-05 14:52:22Z raasch
44	# adjustments for CSC Helsinki (lccrayf),
45	# executables for batch jobs can be created in advance, in order to avoid calling
46	# the compiler within the batch job (only works if batch jobs are submitted on
47	# local host)
48	#
49	# 1190 2013-06-25 09:39:21Z heinze
50	# enable use of automatic restarts for ibmh
51	# use of cluster/express queue enabled (ibmh)
52	#
53	# 1124 2013-04-09 15:46:52Z raasch
54	# variable "memory" is exported via typeset option -x, because otherwise an unknown
55	# side effect may lead to data loss while getopts is reading the script-option arguments
56	#
57	# 1122 2013-04-09 08:37:16Z heinze
58	# Bugfix: change type of variable last_char
59	#
60	# 1119 2013-04-05 15:11:19Z raasch
61	# Bugfix for setting -T option for subjob
62	#
63	# 1108 2013-03-05 07:03:32Z raasch
64	# bugfix for coupled runs on lckyut/lckyuh
65	#
66	# 1106 2013-03-04 05:31:38Z raasch
67	# --stdin argument for mpiexec on lckyuh
68	# -y and -Y settings output to header
69	#
70	# 1103 2013-02-20 02:15:53Z raasch
71	# default script runs again under ksh, because of unsolved problems with read
72	# from stdin: when bash script is called from a ksh, message "read error: 0:
73	# Resource temporarily unavailable" appears and script does not stop,
74	# further bash compatibility adjustments,
75	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
76	# on lckyuh, but mrun does not terminate and issues a warning instead
77	#
78	# 1101 2013-02-17 10:20:21Z raasch
79	# script now running under bash instead of ksh, which required small adjustments
80	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
81	# read from stdin),
82	# cross compilername on lckyuh compute nodes replaced by real compiler name
83	#
84	# 1099 2013-02-10 01:47:43Z raasch
85	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
86	# and for Forwind cluster (lcflow)
87	# small further adjustments for lckyut
88	#
89	# 1094 2013-02-03 01:52:12Z raasch
90	# explicit ssh/scp port can be set in config file with environment variable
91	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
92	# decalpha parts (yonsei) removed
93	#
94	# 2013-02-02 07:06:13Z raasch
95	# adjustments for Kyushu-University computing center (lckyut - tatara)
96	#
97	# 1083 2013-01-04 10:22:09Z maronga
98	# bugfix in parameter file check (read %cpp_options was missing)
99	#
100	# 1069 2012-11-28 16:18:43Z maronga
101	# bugfix: coupling mode was always set to mpi2, typos removed
102	#
103	# 1058 2012-11-21 07:00:35Z raasch
104	# Intel inspector (inspxe) is given the number of PEs instead of the number of
105	# nodes
106	#
107	# 1046 2012-11-09 14:38:45Z maronga
108	# code put under GPL (PALM 3.9)
109	#
110	# 21/03/94 - Siggi - first version finished
111	# 03/03/94 - Siggi - script development started
112	#
113	#--------------------------------------------------------------------------------#
114	# mrun - script for running PALM jobs
115	#--------------------------------------------------------------------------------#
116
117
118
119	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
120
121	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
122	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
123	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
124
125	AddFilenames=""
126	additional_conditions=""
127	add_source_path=""
128	afname=""
129	archive_save=true
130	archive_system=none
131	check_namelist_files=true
132	combine_plot_fields=true
133	compiler_name=""
134	cond1=""
135	cond2=""
136	config_file=.mrun.config
137	coupled_dist=""
138	coupled_mode="mpi1"
139	cpp_opts=""
140	cpp_options=""
141	cpumax=0
142	cpurest=0
143	create_executable_for_batch=false
144	delete_temporary_catalog=true
145	do_batch=false
146	do_compile=true
147	do_remote=false
148	do_stagein=true
149	do_stageout=true
150	do_trace=false
151	email_notification="none"
152	exclude=""
153	executable=""
154	execution_error=false
155	fftw_inc=""
156	fftw_lib=""
157	fftw_support=false
158	fimm=false
159	fname=test
160	fromhost=""
161	global_revision=""
162	group_number=none
163	host=""
164	host_file=""
165	hp=""
166	ignore_archive_error=false
167	input_list=""
168	interpreted_config_file=""
169	job_catalog="~/job_queue"
170	job_on_file=""
171	keep_data_from_previous_run=false
172	link_local_input=false
173	link_local_output=false
174	localhost_realname=$(hostname)
175	local_compile=false
176	local_dvrserver_running=.FALSE.
177	locat=normal
178	mainprog=""
179	makefile=""
180	max_par_io_str=""
181	mc=$0
182	while [[ $(echo $mc \| grep -c "/") != 0 ]]
183	do
184	mc=`echo $mc \| cut -f2- -d"/"`
185	done
186	module_calls=""
187	mrun_script_name=$mc
188	netcdf_inc=""
189	netcdf_lib=""
190	netcdf_support=false
191	node_usage=default
192	numprocs=""
193	numprocs_atmos=0
194	numprocs_ocean=0
195	OOPT=""
196	openmp=false
197	output_list=""
198	package_list=""
199	punkte="..........................................................."
200	queue=none
201	read_from_config=""
202	restart_run=false
203	if [[ `hostname` = rte10 ]]
204	then
205	return_addres=133.5.185.60
206	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
207	elif [[ `hostname` = climate0 ]]
208	then
209	return_addres=165.132.26.68
210	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
211	elif [[ `hostname` = urban00 ]]
212	then
213	return_addres=147.46.30.151
214	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
215	else
216	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
217	fi
218	return_password=""
219	return_username=$LOGNAME
220	remotecall=false
221	remote_username=""
222	run_coupled_model=false
223	run_mode=""
224	scirocco=false
225	store_on_archive_system=false
226	striche=" ----------------------------------------------------------------------------"
227	silent=false
228	source_list=""
229	source_path=SOURCE
230	tasks_per_node=""
231	threads_per_task=1
232	tmpcreate=false
233	tmp_data_catalog=""
234	transfer_problems=false
235	usern=$LOGNAME
236	use_openmp=false
237	version="MRUN 2.0 Rev$Rev: 1241 $"
238	working_directory=`pwd`
239	TOPT=""
240	XOPT=""
241	zeit=$( date \| cut -c 12-19 )
242
243	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
244	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
245	# effect may cause data loss when getopts is reading the
246	# script-option arguments
247	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes sekunden tp1
248
249
250
251
252	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
253	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
254
255	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
256	# EXPORTIERT WERDEN
257	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
258	export group_number input_list numprocs output_list queue run_mode
259
260
261
262	# FEHLERBEHANDLUNG
263	# BEI EXIT:
264	trap 'rm -rf $working_directory/tmp_mrun
265	if [[ $locat != localhost ]]
266	then
267	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
268	# then
269	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
270	#MRUN-calls on $localhost
271	#
272	#date and time user localhost remotehost termination mrun-command
273	#--------------------------------------------------------------------------------------------------------------------
274	#%STATEND%
275	# chmod 666 ${mrun_path}/statistik/mrun_statistik
276	# fi
277	#
278	# # EINTRAG IN DIE STATISTIK-DATEI
279	# string1=`date` #-L35
280	# string2=$usern #-L12
281	# string3=$localhost_realname #-L12
282	# string4=$host #-L12
283	# string5=$locat #-L12
284	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
285	# then
286	# if [[ $do_batch = true ]]
287	# then
288	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
289	# else
290	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
291	# fi
292	# fi
293	echo " " > /dev/null
294	fi
295
296	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
297	then
298
299	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
300	(( i = 0 ))
301	while (( i < iec ))
302	do
303	(( i = i + 1 ))
304	printf "\n *** Execution of ERROR-command:\n"
305	printf " >>> ${err_command[$i]}\n"
306	eval ${err_command[$i]}
307	done
308	if [[ -n $interpreted_config_file ]]
309	then
310	rm -rf $interpreted_config_file
311	fi
312	if [[ -n .mrun_environment ]]
313	then
314	rm -rf .mrun_environment
315	fi
316	if [[ $tmpcreate = true ]]
317	then
318	printf "\n *** Contents of \"$TEMPDIR\":\n"
319	ls -al; cd
320	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
321	fi
322	if [[ "$dvrserver_id" != "" ]]
323	then
324	echo "+++ killing dvrserver_id=$dvrserver_id"
325	kill $dvrserver_id
326	fi
327	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
328	then
329	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
330	fi
331	printf "\n\n+++ MRUN killed \n\n"
332	elif [[ $locat != control_c ]]
333	then
334	printf "\n\n --> all actions finished\n\n"
335	printf " Bye, bye $usern !!\n\n"
336	fi' exit
337
338
339	# BEI TERMINAL-BREAK:
340	trap 'rm -rf $working_directory/tmp_mrun
341	rm -rf $working_directory/tmp_check_namelist_files
342	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
343	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
344	then
345	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
346	fi
347	if [[ "$dvrserver_id" != "" ]]
348	then
349	echo "+++ killing dvrserver_id=$dvrserver_id"
350	kill $dvrserver_id
351	fi
352	printf "\n+++ MRUN killed by \"^C\" \n\n"
353	locat=control_c
354	exit
355	' 2
356
357
358	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
359	# BEEN SET
360	if [[ "$PALM_BIN" = "" ]]
361	then
362	printf "\n +++ environment variable PALM_BIN has not been set"
363	printf "\n please set it to the directory where the PALM scripts are located"
364	locat=palm_bin; exit
365	fi
366	export PATH=$PALM_BIN:$PATH
367
368
369
370	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
371	# FUER FOLGEJOBS BENOETIGT WIRD
372	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
373	do
374	case $option in
375	(a) afname=$OPTARG;;
376	(A) store_on_archive_system=true; mc="$mc -A";;
377	(b) do_batch=true; mc="$mc -b";;
378	(B) delete_temporary_catalog=false; mc="$mc -B";;
379	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
380	(C) restart_run=true; mc="$mc -C";;
381	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
382	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
383	(F) job_on_file="-D"; mc="$mc -F";;
384	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
385	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
386	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
387	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
388	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
389	(I) ignore_archive_error=true; mc="$mc -I";;
390	(k) keep_data_from_previous_run=true; mc="$mc -k";;
391	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
392	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
393	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
394	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
395	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
396	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
397	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
398	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
399	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
400	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
401	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
402	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
403	(S) read_from_config=false; mc="$mc -S";;
404	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
405	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
406	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
407	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
408	(v) silent=true; mc="$mc -v";;
409	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
410	(x) do_trace=true;set -x; mc="$mc -x";;
411	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
412	(y) ocean_file_appendix=true; mc="$mc -y";;
413	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
414	(z) check_namelist_files=false; mc="$mc -z";;
415	(Z) combine_plot_fields=false; mc="$mc -Z";;
416	(\?) printf "\n +++ unknown option $OPTARG \n"
417	printf "\n --> type \"$0 ?\" for available options \n"
418	locat=parameter;exit;;
419	esac
420	done
421
422
423	# EVTL. POSITIONSPARAMETER EINLESEN
424	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
425	(( to_shift = $OPTIND - 1 ))
426	shift $to_shift
427
428	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
429	if [[ "$1" = "?" ]]
430	then
431	(printf "\n *** mrun can be called as follows:\n"
432	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
433	printf "\n Description of available options:\n"
434	printf "\n Option Description Default-Value"
435	printf "\n -a base name of input files equiv. -d"
436	printf "\n -A archiving when using file-attribute fl"
437	printf "\n -b batch-job on local machine ---"
438	printf "\n -B do not delete temporary directory at end ---"
439	printf "\n -c configuration file .mrun.config"
440	printf "\n -d base name of files attached to program test"
441	printf "\n -D preprocessor(cpp)-directives \"\" "
442	printf "\n -F create remote job file only ---"
443	printf "\n -h execution host $localhost_realname"
444	printf "\n -i INPUT control list \"\" "
445	printf "\n -I archiving errors of previous batch-jobs"
446	printf "\n will be ignored"
447	printf "\n -k keep data from previous run"
448	printf "\n -K additional conditions for controling"
449	printf "\n usage of conditional code and"
450	printf "\n env-variables in configuration file \"\" "
451	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
452	printf "\n -M Makefile name Makefile"
453	printf "\n -n node usage (shared/not_shared) depending on -h"
454	printf "\n -o OUTPUT control list \"\" "
455	printf "\n -O use OpenMP ---"
456	printf "\n -p software package list \"\" "
457	printf "\n -q queue \"$queue\" "
458	printf "\n -r run control list (combines -i -o) \"\" "
459	printf "\n -s filenames of routines to be compiled \"\" "
460	printf "\n must end with .f, .f90, .F, or .c !"
461	printf "\n use \"..\" for more than one file and wildcards"
462	printf "\n -s LM compiles all locally modified files"
463	printf "\n -S config file interpreted by shellscript ---"
464	printf "\n -t allowed cpu-time in seconds (batch) 0"
465	printf "\n -T tasks per node depending on -h"
466	printf "\n -u username on remote machine \"\" "
467	printf "\n -v no prompt for confirmation ---"
468	printf "\n -w maximum parallel io streams as given by -X"
469	printf "\n -x tracing of mrun for debug purposes ---"
470	printf "\n -X # of processors (on parallel machines) 1"
471	printf "\n -y add appendix \"_O\" to all local output"
472	printf "\n files (ocean precursor runs followed by"
473	printf "\n coupled atmosphere-ocean runs) ---"
474	printf "\n -Y run coupled model, \"#1 #2\" with"
475	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
476	printf "\n -z disable a priori parameter file check ---"
477	printf "\n -Z skip combine_plot_fields at the end of "
478	printf "\n the simulation ---"
479	printf "\n "
480	printf "\n Possible values of positional parameter <modus>:"
481	printf "\n \"?\" - this outline \n\n") \| more
482	exit
483	elif [[ "$1" != "" ]]
484	then
485	printf "\n +++ positional parameter $1 unknown \n"
486	locat=parameter; exit
487	fi
488
489
490
491	# KURZE STARTMELDUNG
492	printf "\n*** $version "
493	printf "\n will be executed. Please wait ..."
494
495
496
497	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
498	if [[ ! -f $config_file ]]
499	then
500	printf "\n\n +++ configuration file: "
501	printf "\n $config_file"
502	printf "\n does not exist"
503	locat=connect; exit
504	fi
505
506
507	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
508	line=""
509	grep "%host_identifier" $config_file > tmp_mrun
510	while read line
511	do
512	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
513	then
514	HOSTNAME=`echo $line \| cut -d" " -s -f2`
515	host_identifier=`echo $line \| cut -d" " -s -f3`
516	if [[ $localhost_realname = $HOSTNAME ]]
517	then
518	localhost=$host_identifier
519	break
520	fi
521	fi
522	done < tmp_mrun
523
524	if [[ "$localhost" = "" ]]
525	then
526	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
527	printf "\n for local host \"$localhost_realname\"."
528	printf "\n Please add line"
529	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
530	printf "\n to the configuration file."
531	locat=localhost; exit
532	fi
533
534
535	# HOSTSPEZIFISCHE VARIABLEN SETZEN
536	case $localhost_realname in
537	(r1\|r2\|h01\|b01) archive_system=tivoli;;
538	(cs*) archive_system=ut;;
539	(fimm.bccs.uib.no) fimm=true;;
540	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
541	(scirocco) scirocco=true;;
542	esac
543
544
545
546	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
547	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
548	[[ "$afname" = "" ]] && afname=$fname
549
550
551	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
552	if [[ "$run_mode" != "" ]]
553	then
554	input_list="$input_list $run_mode"
555	output_list="$output_list $run_mode"
556	fi
557
558
559	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
560	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
561	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
562	# STARTET)
563	if [[ "$fromhost" = "" ]]
564	then
565	fromhost=$localhost
566	fi
567
568
569	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
570	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
571	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
572	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
573	if [[ -n $host && "$host" != $localhost ]]
574	then
575	do_batch=true
576	do_remote=true
577	case $host in
578	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
579	(*) printf "\n"
580	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
581	printf "\n is not available"
582	locat=nqs; (( iec = 0 )); exit;;
583	esac
584	else
585	host=$localhost
586	fi
587
588
589	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
590	if [[ -n $additional_conditions ]]
591	then
592	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
593	cond1=`echo $additional_conditions \| cut -d" " -f1`
594	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
595	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
596	if [[ -n $dummy ]]
597	then
598	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
599	locat=options; exit
600	fi
601	block=_$cond1
602	[[ -n $cond2 ]] && block=${block}_$cond2
603	fi
604
605
606	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
607	if [[ $run_coupled_model = true ]]
608	then
609
610	if [[ -n $coupled_dist ]]
611	then
612
613	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
614	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
615
616	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
617	then
618
619	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
620	printf "\n PEs (total) : $numprocs"
621	printf "\n PEs (atmosphere): $numprocs_atmos"
622	printf "\n PEs (ocean) : $numprocs_ocean"
623	locat=coupling; exit
624
625	fi
626
627	else
628
629	(( numprocs_ocean = $numprocs / 2 ))
630	(( numprocs_atmos = $numprocs / 2 ))
631
632	fi
633	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
634
635	# GET coupled_mode FROM THE CONFIG FILE
636	line=""
637	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
638	while read line
639	do
640	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
641	then
642	coupled_mode="mpi2"
643	fi
644	done < tmp_mrun
645
646	fi
647
648
649	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
650	# ARCHIVIERUNG FEHLGESCHLAGEN IST
651	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
652	then
653	if [[ $ignore_archive_error = false ]]
654	then
655	printf "\n +++ data archiving of previous run failed"
656	printf "\n see directory \~/job_queue on remote machine"
657	locat=archive; exit
658	else
659	printf "\n +++ warning: data archiving in a previous run failed"
660	printf "\n MRUN continues, trying to get backup copy"
661	fi
662	fi
663
664
665	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
666	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
667	mrun_memory=$memory
668	mrun_group_number=$group_number
669	mrun_cpumax=$cpumax
670	mrun_numprocs=$numprocs
671
672
673	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
674	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
675	if [[ "$read_from_config" = false ]]
676	then
677
678	[[ $silent = false ]] && printf "\n Reading the configuration file... "
679	while read zeile
680	do
681	[[ $silent = false ]] && printf "."
682
683
684	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
685	# ERSETZEN
686	eval zeile=\"$zeile\"
687
688
689	# INTERPRETATION DER ZEILE
690	if [[ "$(echo $zeile)" = "" ]]
691	then
692	# LEERZEILE, KEINE AKTION
693	continue
694
695	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
696	then
697
698	# ZEILE IST KOMMENTARZEILE
699	true
700
701	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
702	then
703
704	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
705	zeile=$(echo $zeile \| cut -c2-)
706	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
707	var=`echo $zeile \| cut -d" " -f1`
708	value=`echo $zeile \| cut -d" " -s -f2`
709	for_host=`echo $zeile \| cut -d" " -s -f3`
710	for_cond1=`echo $zeile \| cut -d" " -s -f4`
711	for_cond2=`echo $zeile \| cut -d" " -s -f5`
712
713	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
714	then
715
716	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
717	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
718	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
719
720
721	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
722	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
723	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
724	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
725	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
726	# KONFIGURATIONSDATEI
727	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
728	then
729	eval $var=\$value
730
731	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
732	if [[ $do_trace = true ]]
733	then
734	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
735	fi
736	fi
737
738	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
739	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
740	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
741	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
742	if [[ $var = host ]]
743	then
744	if [[ -n $host && "$host" != $localhost ]]
745	then
746	do_batch=true
747	do_remote=true
748	case $host in
749	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
750	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
751	printf "\n is not available"
752	locat=nqs; exit;;
753	esac
754	else
755	host=$localhost
756	fi
757	fi
758
759	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
760	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
761	# DEN PROGRAMMEN BENOETIGT WERDEN
762	export $var
763	fi
764
765
766
767
768	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
769	then
770
771	# ZEILE DEFINIERT ERROR-KOMMANDO
772	(( iec = iec + 1 ))
773	zeile=$(echo $zeile \| cut -c4-)
774	err_command[$iec]="$zeile"
775
776	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
777	then
778
779	# ZEILE DEFINIERT INPUT-KOMMANDO
780	(( iic = iic + 1 ))
781	zeile=$(echo $zeile \| cut -c4-)
782	in_command[$iic]="$zeile"
783
784	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
785	then
786
787	# ZEILE DEFINIERT OUTPUT-KOMMANDO
788	(( ioc = ioc + 1 ))
789	zeile=$(echo $zeile \| cut -c4-)
790	out_command[$ioc]="$zeile"
791
792	else
793
794	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
795	# s2a: in/out - Feld
796	# s2b: loc - Feld (optional)
797	# s2c: tr/ar - Feld (optional)
798	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
799	s1=`echo $zeile \| cut -d" " -f1`
800	s2=`echo $zeile \| cut -d" " -s -f2`
801	s2a=$(echo $s2 \| cut -d":" -f1)
802	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
803	then
804	s2b=""
805	s2c=""
806	else
807	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
808	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
809	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
810	fi
811	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
812	s3=`echo $zeile \| cut -d" " -f3`
813	s4=`echo $zeile \| cut -d" " -s -f4`
814	s5=`echo $zeile \| cut -d" " -s -f5`
815	s6=`echo $zeile \| cut -d" " -s -f6`
816
817
818	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
819	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
820	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
821	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
822	# HANDEN SEIN MUSS (D.H. s2b = loc)
823	IFSALT="$IFS"; IFS="$IFS:"
824	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
825	then
826	found=false
827	for actual in $input_list
828	do
829	for formal in $s3
830	do
831	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
832	done
833	done
834	if [[ $found = true ]]
835	then
836	(( iin = iin + 1 ))
837	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
838	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
839	extin[$iin]=$s6
840	fi
841	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
842	then
843	found=false
844	for actual in $output_list
845	do
846	for formal in $s3
847	do
848	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
849	done
850	done
851	if [[ $found = true ]]
852	then
853	(( iout = iout + 1 ))
854	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
855	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
856	fi
857	elif [[ "$s2a" != in && "$s2a" != out ]]
858	then
859	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
860	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
861	locat=connect; exit
862	fi
863	IFS="$IFSALT"
864	fi
865	done < $config_file
866
867	else
868
869
870	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
871	[[ $silent = false ]] && printf "..."
872	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
873	export interpreted_config_file=.icf.$RANDOM
874
875
876
877	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
878	# VERFUEGUNG STELLEN
879	cat > .mrun_environment << %%END%%
880	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
881	config_file = '$config_file', do_remote = '$do_remote',
882	do_trace = '$do_trace', host = '$host',
883	input_list = '$input_list', icf = '$interpreted_config_file',
884	localhost = '$localhost', output_list = '$output_list' /
885
886	%%END%%
887
888	if [[ $localhost_realname = "sx-fep" ]]
889	then
890	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
891	else
892
893	if [[ "$host" != $localhost ]]
894	then
895
896	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
897	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
898	if [[ $? != 0 ]]
899	then
900	printf "\n\n +++ no interpret_config found"
901	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
902	locat=interpret_config; exit
903	fi
904	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
905	$interpret_config_executable
906
907	else
908
909	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
910	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
911	then
912	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
913	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
914	locat=interpret_config; exit
915	else
916	interpret_config${block}.x
917	fi
918
919	fi
920	fi
921	rm .mrun_environment
922
923
924	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
925	chmod u+x $interpreted_config_file
926	export PATH=$PATH:.
927	. $interpreted_config_file
928	rm $interpreted_config_file
929
930	fi
931
932
933	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
934	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
935	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
936	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
937	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
938	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
939	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
940
941
942	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
943	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
944	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
945	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
946	if [[ "$SOURCES_COMPLETE" = "" ]]
947	then
948
949	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
950	# VEREINBART WURDE
951	source_path=""
952	line=""
953	grep "%source_path" $config_file > tmp_mrun
954	while read line
955	do
956	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
957	then
958	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
959	then
960	global_source_path=`echo $line \| cut -d" " -f2`
961	fi
962	fi
963	done < tmp_mrun
964
965	line=""
966	found=false
967	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
968	while read line
969	do
970	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
971	then
972	if [[ $found = true ]]
973	then
974	printf "\n\n +++ more than one source path found in configuration file"
975	printf "\n for local host \"$localhost\" "
976	locat=source_path; exit
977	fi
978	source_path=`echo $line \| cut -d" " -f2`
979	found=true
980	fi
981	done < tmp_mrun
982	rm tmp_mrun
983
984	if [[ "$source_path" = "" ]]
985	then
986	if [[ "$global_source_path" != "" ]]
987	then
988	source_path=$global_source_path
989	else
990	printf "\n\n +++ no source path found in configuration file"
991	printf "\n for local host \"$localhost\" "
992	locat=source_path; exit
993	fi
994	fi
995	eval source_path=$source_path
996
997	if [[ ! -d $source_path ]]
998	then
999	printf "\n\n +++ source path \"$source_path\" on local host"
1000	printf "\n \"$localhost\" does not exist"
1001	locat=source_path; exit
1002	fi
1003
1004	fi
1005
1006
1007	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1008	# DURCH OPTION -G MITGETEILT)
1009	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1010	then
1011	global_revision=`svnversion $source_path 2>/dev/null`
1012	global_revision="Rev: $global_revision"
1013	fi
1014
1015
1016	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1017	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1018	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1019	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1020	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1021	if [[ -n $host && "$host" != $localhost ]]
1022	then
1023	do_batch=true
1024	do_remote=true
1025	case $host in
1026	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
1027	(*) printf "\n"
1028	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1029	printf "\n is not available"
1030	locat=nqs; (( iec = 0 )); exit;;
1031	esac
1032	else
1033	host=$localhost
1034	fi
1035
1036
1037	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1038	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1039	then
1040
1041	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1042	if [[ ! -n $numprocs ]]
1043	then
1044	printf "\n"
1045	printf "\n +++ option \"-K parallel\" requires additional specification"
1046	printf "\n of the number of processors to be used by"
1047	printf "\n mrun-option \"-X\" or by environment-variable"
1048	printf "\n \"numprocs\" in the configuration file"
1049	locat=numprocs; (( iec = 0 )); exit
1050	fi
1051
1052	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1053	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1054	# GESAMTPROZESSORANZAHL IST
1055	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1056	then
1057	printf "\n"
1058	printf "\n +++ option \"-T\" (tasks per node) is missing"
1059	printf "\n set -T option or define tasks_per_node in the config file"
1060	locat=tasks_per_node; (( iec = 0 )); exit
1061	fi
1062	if [[ $host != lcflow && $host != lcxt5m ]]
1063	then
1064	(( ival = $tasks_per_node ))
1065	(( pes = numprocs ))
1066	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1067	# then
1068	# (( pes = pes - 1 ))
1069	# fi
1070	(( ii = pes / ival ))
1071	if (( pes - ii * ival > 0 ))
1072	then
1073	printf "\n"
1074	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1075	printf "\n divisor of the total number of processors (option \"-X\")"
1076	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1077	locat=tasks_per_node; (( iec = 0 )); exit
1078	fi
1079	fi
1080
1081
1082	# IBMY HAT NUR EINEN KNOTEN
1083	if [[ $host = ibmy ]]
1084	then
1085	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1086	then
1087	printf "\n"
1088	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1089	printf "\n total number of processors (option \"-X\")"
1090	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1091	locat=tasks_per_node; (( iec = 0 )); exit
1092	fi
1093	fi
1094
1095
1096	# SETTINGS FOR SUBJOB-COMMAND
1097	OOPT="-O $threads_per_task"
1098
1099	# GESAMTZAHL DER KNOTEN BESTIMMEN
1100	if [[ "$tasks_per_node" != "" ]]
1101	then
1102	TOPT="-T $tasks_per_node"
1103	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1104	fi
1105
1106	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1107	# SETZEN
1108	if [[ $node_usage = default ]]
1109	then
1110	if [[ $host = ibms ]]
1111	then
1112	node_usage=shared
1113	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1114	then
1115	node_usage=singlejob
1116	else
1117	node_usage=not_shared
1118	fi
1119	fi
1120
1121	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1122	then
1123	printf "\n"
1124	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1125	printf "\n \"shared\" or \"not_shared\""
1126	locat=tasks_per_node; (( iec = 0 )); exit
1127	fi
1128
1129	fi
1130
1131	# PRUEFEN, OB HOSTFILE EXISTIERT
1132	if [[ -n $hostfile ]]
1133	then
1134	if [[ ! -f $hostfile ]]
1135	then
1136	printf "\n"
1137	printf "\n +++ hostfile \"$hostfile\" does not exist"
1138	locat=hostfile; exit
1139	fi
1140	fi
1141
1142	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1143	if [[ $host = ibmy && $do_remote = false ]]
1144	then
1145	if [[ ! -f $HOME/.rhosts ]]
1146	then
1147	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1148	printf "\n\n *** file:"
1149	printf "\n $HOME/.rhosts"
1150	printf "\n was created\n"
1151	fi
1152	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1153	then
1154	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1155	printf "\n\n *** file:"
1156	printf "\n $HOME/.rhosts"
1157	printf "\n was extended by the name of the current host\n"
1158	fi
1159	fi
1160
1161
1162	# Set default value for the maximum number of parallel io streams
1163	if [[ "$maximum_parallel_io_streams" = "" ]]
1164	then
1165	maximum_parallel_io_streams=$numprocs
1166	fi
1167
1168
1169	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1170	if [[ "$scp_port" != "" ]]
1171	then
1172	PORTOPT="-P $scp_port"
1173	SSH_PORTOPT="-p $scp_port"
1174	fi
1175
1176
1177	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1178	if [[ $queue = none ]]
1179	then
1180	case $host in
1181	(ibmh) queue=cluster;;
1182	(ibmkisti) queue=class.32plus;;
1183	(ibmy) queue=parallel;;
1184	(lckiaps) queue=normal;;
1185	(lckyoto) queue=ph;;
1186	(lckyuh) queue=fx-single;;
1187	(lckyut) queue=cx-single;;
1188	(lcsgib) queue=testq;;
1189	(lcsgih) queue=testq;;
1190	(lctit) queue=S;;
1191	(nech) queue=none;;
1192	(necriam) queue=SP;;
1193	(unics) queue=unics;;
1194	esac
1195	fi
1196
1197
1198	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1199	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1200	# ERMITTELN
1201	(( i = 0 ))
1202	while (( i < iin ))
1203	do
1204	(( i = i + 1 ))
1205	(( maxcycle = 0 ))
1206
1207	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1208	if [[ "${actionin[$i]}" = di ]]
1209	then
1210	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1211	# REM-MASCHINE AUSWERTEN
1212	eval filename=${pathin[$i]}/${endin[$i]}
1213	else
1214	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1215	# REM-MASCHINE AUSWERTEN
1216	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1217	fi
1218	eval pathname=${pathin[$i]}
1219
1220	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1221	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1222	then
1223	filename_input=$filename
1224	fi
1225
1226	# PRUEFEN AUF VORHANDENSEIN
1227	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1228	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1229	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1230	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1231	then
1232	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1233	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1234	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1235	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1236	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1237	if [[ "${transin[$i]}" != "locopt" ]]
1238	then
1239	printf "\n\n +++ INPUT-file: "
1240	if [[ "${extin[$i]}" = "" ]]
1241	then
1242	printf "\n $filename"
1243	else
1244	printf "\n $filename.${extin[$i]}"
1245	fi
1246	printf "\n does not exist\n"
1247	locat=input; exit
1248	else
1249	transin[$i]="unavailable"
1250	fi
1251	else
1252
1253	# ZYKLUSNUMMER FESTSTELLEN
1254	ls -1 -d $filename > filelist 2>/dev/null
1255	ls -1 -d $filename.* >> filelist 2>/dev/null
1256	while read zeile
1257	do
1258	cycle=$(echo $zeile \| cut -f2 -d".")
1259	if [[ "$cycle" = "$zeile" ]]
1260	then
1261	(( icycle = 0 ))
1262	elif [[ "$cycle" = "${extin[$i]}" ]]
1263	then
1264	(( icycle = 0 ))
1265	else
1266	(( icycle = $cycle ))
1267	fi
1268	if (( icycle > maxcycle ))
1269	then
1270	(( maxcycle = icycle ))
1271	file_to_be_used=$zeile
1272	fi
1273	done <filelist
1274	rm filelist
1275
1276	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1277	if (( maxcycle > 0 ))
1278	then
1279	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1280	then
1281	filename=${filename}.$maxcycle.${extin[$i]}
1282	else
1283	filename=${filename}.$maxcycle
1284	fi
1285	else
1286	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1287	then
1288	filename=${filename}.${extin[$i]}
1289	fi
1290	fi
1291
1292	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1293	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1294	absnamein[$i]=$filename
1295	if (( maxcycle > 0 ))
1296	then
1297	if [[ "${actionin[$i]}" = di ]]
1298	then
1299	frelin[$i]=${endin[$i]}.$maxcycle
1300	else
1301	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1302	fi
1303	else
1304	if [[ "${actionin[$i]}" = di ]]
1305	then
1306	frelin[$i]=${endin[$i]}
1307	else
1308	frelin[$i]=${afname}${endin[$i]}
1309	fi
1310	fi
1311
1312	fi
1313	done
1314
1315	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1316	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1317	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1318	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1319	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1320	(( i = 0 ))
1321	while (( i < iout ))
1322	do
1323	(( i = i + 1 ))
1324	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1325	then
1326	if [[ "${actionout[$i]}" = tr ]]
1327	then
1328	actionout[$i]=""
1329	elif [[ "${actionout[$i]}" = trpe ]]
1330	then
1331	actionout[$i]=pe
1332	elif [[ "${actionout[$i]}" = tra ]]
1333	then
1334	actionout[$i]=a
1335	fi
1336	(( maxcycle = 0 ))
1337	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1338	eval catalogname=${pathout[$i]}
1339	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1340	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1341	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1342	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1343	then
1344
1345	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1346	if cat /dev/null > $filename
1347	then
1348	rm $filename
1349	else
1350
1351	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1352	if [[ ! -d $catalogname ]]
1353	then
1354	if mkdir -p $catalogname
1355	then
1356	printf "\n\n *** directory:"
1357	printf "\n $catalogname"
1358	printf "\n was created\n"
1359	else
1360	printf "\n\n +++ OUTPUT-file:"
1361	printf "\n $filename"
1362	printf "\n cannot be created, because directory does not exist"
1363	printf "\n and cannot be created either"
1364	printf "\n"
1365	locat=output ; exit
1366	fi 2>/dev/null
1367	else
1368	printf "\n\n +++ OUTPUT-file:"
1369	printf "\n $filename"
1370	printf "\n cannot be created, although directory exists"
1371	printf "\n"
1372	locat=output ; exit
1373	fi
1374	fi 2>/dev/null
1375	else
1376
1377	# ZYKLUSNUMMER FESTSTELLEN
1378	ls -1 -d $filename > filelist 2>/dev/null
1379	ls -1 -d $filename.* >> filelist 2>/dev/null
1380	while read zeile
1381	do
1382	cycle=$(echo $zeile \| cut -f2 -d".")
1383	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1384	then
1385	(( icycle = 1 ))
1386	else
1387	(( icycle = $cycle + 1 ))
1388	fi
1389	if (( icycle > maxcycle ))
1390	then
1391	(( maxcycle = icycle ))
1392	fi
1393	done <filelist
1394	rm filelist
1395	fi
1396
1397	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1398	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1399	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1400	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1401	if [[ "${actionout[$i]}" != a ]]
1402	then
1403	if (( maxcycle > 0 ))
1404	then
1405	filename=${filename}.$maxcycle
1406	if cat /dev/null > $filename
1407	then
1408	rm $filename
1409	else
1410	printf "\n +++ OUTPUT-file:"
1411	printf "\n $filename"
1412	printf "\n cannot be created"
1413	locat=output ; exit
1414	fi
1415	fi
1416	else
1417	(( maxcycle = maxcycle - 1 ))
1418	if (( maxcycle > 0 ))
1419	then
1420	filename=${filename}.$maxcycle
1421	fi
1422	fi
1423
1424	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1425	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1426	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1427	pathout[$i]=$filename
1428	if (( maxcycle > 0 ))
1429	then
1430	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1431	else
1432	frelout[$i]=${fname}${endout[$i]}
1433	fi
1434
1435	fi
1436	done
1437
1438
1439	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1440	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1441	then
1442	if [[ "$dvr_inc" = "" ]]
1443	then
1444	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1445	printf "\n This is required for the dvrp_graphics package.\n"
1446	locat=dvr; exit
1447	fi
1448	if [[ "$dvr_lib" = "" ]]
1449	then
1450	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1451	printf "\n This is required for the dvrp_graphics package.\n"
1452	locat=dvr; exit
1453	fi
1454	fi
1455
1456
1457	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1458	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1459	# UEBERSETZT ZU WERDEN)
1460	if [[ "$mainprog" = "" && "$executable" = "" ]]
1461	then
1462	printf "\n +++ neither main program nor executable defined"
1463	locat=source; exit
1464	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1465	then
1466	printf "\n +++ main program as well as executable defined"
1467	locat=source; exit
1468	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1469	then
1470	do_compile=false
1471	fi
1472
1473
1474	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1475	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1476	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1477	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1478	then
1479	rm -rf SOURCES_FOR_RUN_$fname
1480	mkdir SOURCES_FOR_RUN_$fname
1481	fi
1482
1483
1484	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1485	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1486	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1487	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1488	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1489	then
1490
1491	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1492
1493	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1494	then
1495
1496	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1497	source_list=""
1498	cd $source_path
1499
1500
1501	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1502	if [[ ! -d .svn ]]
1503	then
1504	printf "\n\n +++ source directory"
1505	printf "\n \"$source_path\" "
1506	printf "\n is not under control of \"subversion\"."
1507	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1508	fi
1509
1510
1511	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1512	Filenames=""
1513	svn status > tmp_mrun
1514	while read line
1515	do
1516	firstc=`echo $line \| cut -c1`
1517	if [[ $firstc = M \|\| $firstc = "?" ]]
1518	then
1519	Name=`echo "$line" \| cut -c8-`
1520	extension=`echo $Name \| cut -d. -f2`
1521	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1522	then
1523	Filenames="$Filenames "$Name
1524	fi
1525	fi
1526	done < tmp_mrun
1527
1528
1529	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1530	for dateiname in $Filenames
1531	do
1532	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1533	source_list=$source_list"$dateiname "
1534	done
1535
1536	cd - > /dev/null
1537
1538
1539	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1540	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1541	# VORHANDEN
1542	elif [[ "$source_list" != "" && $restart_run != true ]]
1543	then
1544
1545	cd $source_path
1546
1547	for filename in $source_list
1548	do
1549
1550	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1551	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1552	then
1553	printf "\n +++ source code file: $filename"
1554	printf "\n must not contain (\"/\") "
1555	locat=source; exit
1556	fi
1557
1558	if [[ ! -f $filename ]]
1559	then
1560	printf "\n +++ source code file: $filename"
1561	printf "\n does not exist"
1562	locat=source; exit
1563	else
1564	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1565	fi
1566
1567	done
1568
1569	cd - > /dev/null
1570
1571	fi
1572
1573
1574	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1575	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1576	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1577	if [[ $restart_run != true ]]
1578	then
1579
1580	if [[ ! -f "$source_path/$mainprog" ]]
1581	then
1582	printf "\n\n +++ main program: $mainprog"
1583	printf "\n does not exist in source directory"
1584	printf "\n \"$source_path\"\n"
1585	locat=source; exit
1586	else
1587	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1588	then
1589	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1590	source_list=${mainprog}" $source_list"
1591	fi
1592	fi
1593	fi
1594
1595
1596	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1597	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1598	if [[ "$restart_run" != true ]]
1599	then
1600	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1601	if [[ ! -f $makefile ]]
1602	then
1603	printf "\n +++ file \"$makefile\" does not exist"
1604	locat=make; exit
1605	else
1606	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1607	fi
1608	fi
1609
1610
1611	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1612	if [[ $restart_run != true && "$add_source_path" != "" ]]
1613	then
1614
1615	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1616	if [[ ! -d $add_source_path ]]
1617	then
1618	printf "\n\n +++ WARNING: additional source code directory"
1619	printf "\n \"$add_source_path\" "
1620	printf "\n does not exist or is not a directory."
1621	printf "\n No source code will be used from this directory!\n"
1622	add_source_path=""
1623	if [[ $silent == false ]]
1624	then
1625	sleep 3
1626	fi
1627	else
1628
1629	cd $add_source_path
1630	found=false
1631
1632	Names=$(ls -1 *.f90 2>&1)
1633	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1634	Names=$(ls -1 *.F90 2>&1)
1635	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1636	Names=$(ls -1 *.F 2>&1)
1637	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1638	Names=$(ls -1 *.f 2>&1)
1639	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1640	Names=$(ls -1 *.c 2>&1)
1641	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1642
1643	cd - > /dev/null
1644	cd SOURCES_FOR_RUN_$fname
1645
1646	# COPY MAKEFILE IF EXISTING
1647	if [[ -f $add_source_path/Makefile ]]
1648	then
1649	printf "\n\n *** user Makefile from directory"
1650	printf "\n \"$add_source_path\" is used \n"
1651	if [[ $silent == false ]]
1652	then
1653	sleep 1
1654	fi
1655	cp $add_source_path/Makefile .
1656	fi
1657
1658	for dateiname in $AddFilenames
1659	do
1660	if [[ -f $dateiname ]]
1661	then
1662	printf "\n +++ source code file \"$dateiname\" found in additional"
1663	printf "\n source code directory \"$add_source_path\" "
1664	printf "\n but was also given with option \"-s\" which means that it should be taken"
1665	printf "\n from directory \"$source_path\"."
1666	locat=source; exit
1667	fi
1668
1669	cp $add_source_path/$dateiname .
1670	source_list="$source_list $dateiname"
1671
1672	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1673	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1674	then
1675	printf "\n\n +++ user file \"$dateiname\" "
1676	printf "\n is not listed in Makefile \n"
1677	locat=source; exit
1678	else
1679
1680	# Default User-Interface von der Liste entfernen, falls Datei
1681	# ein User-Interface enthaelt
1682	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1683	# then
1684	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1685	# then
1686	# rm -rf user_interface.f90
1687	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1688	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1689	# printf "\n since a user-interface is found in file"
1690	# printf "\n \"$add_source_path/$dateiname\" \n"
1691	# sleep 3
1692	# else
1693	if [[ $found = false ]]
1694	then
1695	found=true
1696	printf "\n\n *** following user file(s) added to the"
1697	printf " files to be translated:\n "
1698	fi
1699	printf "$dateiname "
1700	if [[ $silent == false ]]
1701	then
1702	sleep 0.5
1703	fi
1704
1705	fi
1706	done
1707	[[ $found = true ]] && printf "\n"
1708	cd - > /dev/null
1709	fi
1710	fi
1711
1712
1713	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1714	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1715	if [[ $restart_run != true && -n $package_list ]]
1716	then
1717
1718	cd $source_path
1719
1720	for package in $package_list
1721	do
1722
1723	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1724
1725	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1726	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1727	# LIEFERT
1728	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1729
1730
1731	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1732	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1733	for source_list_name in $package_source_list
1734	do
1735	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1736	then
1737
1738	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1739	ending=`echo $source_list_name \| cut -f2 -d.`
1740	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1741	then
1742	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1743	source_list="$source_list $source_list_name"
1744	fi
1745	fi
1746	done
1747	done
1748
1749	cd - > /dev/null
1750	fi
1751
1752
1753	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1754	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1755	# if [[ "$restart_run" != true ]]
1756	# then
1757	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1758	# if [[ ! -f $makefile ]]
1759	# then
1760	# printf "\n +++ file \"$makefile\" does not exist"
1761	# locat=make; exit
1762	# else
1763	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1764	# fi
1765	# fi
1766
1767	fi # do_compile=true
1768
1769
1770	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1771	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1772	if [[ $do_compile = true \|\| $create_executable_for_batch = true ]]
1773	then
1774
1775	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1776	# ZUSAMMENSETZEN
1777	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1778	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1779	then
1780	cpp_options="${cpp_options},-D__ibm=__ibm"
1781	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1782	then
1783	cpp_options="$cpp_options -D__nec"
1784	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1785	then
1786	cpp_options="$cpp_options -D__lc"
1787	else
1788	cpp_options="$cpp_options -D__$localhost"
1789	fi
1790
1791	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1792	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1793	then
1794	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1795	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1796	else
1797	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1798	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1799	fi
1800
1801	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1802	if [[ -n $package_list ]]
1803	then
1804	for package in $package_list
1805	do
1806	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1807	then
1808	if [[ $package != "dvrp_graphics+1PE" ]]
1809	then
1810	cpp_options="${cpp_options},-D__$package=__$package"
1811	else
1812	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1813	export use_seperate_pe_for_dvrp_output=true
1814	fi
1815	else
1816	if [[ $package != "dvrp_graphics+1PE" ]]
1817	then
1818	cpp_options="$cpp_options -D__$package"
1819	else
1820	cpp_options="$cpp_options -D__dvrp_graphics"
1821	export use_seperate_pe_for_dvrp_output=true
1822	fi
1823	fi
1824	done
1825	fi
1826
1827	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1828	if [[ -n $cpp_opts ]]
1829	then
1830	for popts in $cpp_opts
1831	do
1832	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1833	then
1834	cpp_options="${cpp_options},-D__$popts=__$popts"
1835	else
1836	cpp_options="$cpp_options -D__$popts"
1837	fi
1838	done
1839	fi
1840
1841	else
1842
1843
1844	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1845	if [[ $do_remote = false ]]
1846	then
1847	if [[ ! -f $executable ]]
1848	then
1849	printf "\n +++ executable file: $executable"
1850	printf "\n does not exist"
1851	locat=executable; exit
1852	fi
1853	fi
1854	fi
1855
1856
1857	# JOBMODUS FESTSTELLEN
1858	if [[ "$ENVIRONMENT" = BATCH ]]
1859	then
1860	jobmo=BATCH
1861	else
1862	jobmo=INTERACTIVE
1863	fi
1864
1865
1866	# no interactive runs on lctit
1867	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1868	then
1869	printf "\n +++ no interactive runs allowed on host \"$host\" "
1870	printf "\n please submit batch job using mrun option \"-b\" \n"
1871	locat=normal; exit
1872	fi
1873
1874
1875	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1876	# DURCH BENUTZER ANDERWEITIG VEREINBART
1877	if [[ "$compiler_name" = "" ]]
1878	then
1879
1880	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1881	locat=compiler_name; exit
1882
1883	fi
1884
1885
1886	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1887	[[ $localhost = necriam ]] && compiler_name=mpif90
1888
1889
1890
1891	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1892	kennung=$RANDOM
1893	if [[ "$tmp_user_catalog" = "" ]]
1894	then
1895	if [[ $localhost = ibmh ]]
1896	then
1897	tmp_user_catalog=$SCRATCH
1898	elif [[ $localhost = nech ]]
1899	then
1900	tmp_user_catalog=$WRKSHR
1901	else
1902	tmp_user_catalog=/tmp
1903	fi
1904	fi
1905	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1906
1907
1908	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1909	# BESTIMMEN
1910	if [[ "$tmp_data_catalog" = "" ]]
1911	then
1912	if [[ $localhost = nech ]]
1913	then
1914	tmp_data_catalog=$WRKSHR/mrun_restart_data
1915	else
1916	tmp_data_catalog=/tmp/mrun_restart_data
1917	fi
1918	fi
1919
1920
1921	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1922	# ERSETZEN
1923	if [[ $do_remote = false && $do_compile = true \|\| $create_executable_for_batch = true ]]
1924	then
1925	eval fopts=\"$fopts\"
1926	eval lopts=\"$lopts\"
1927	fi
1928
1929
1930
1931	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1932	fopts="$fopts $netcdf_inc $fftw_inc $dvr_inc"
1933	lopts="$lopts $netcdf_lib $fftw_lib $dvr_lib"
1934	ROPTS="$ropts"
1935	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1936	# then
1937	XOPT="-X $numprocs"
1938	# fi
1939
1940
1941
1942	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1943	# GRAMM BENOETIGT
1944	done=false
1945	while [[ $done = false ]]
1946	do
1947	cputime=$cpumax
1948	if (( $cputime == 0 ))
1949	then
1950	if [[ $do_batch = true ]]
1951	then
1952	printf "\n +++ cpu-time is undefined"
1953	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1954	printf "\n >>> "
1955	read cputime 1>/dev/null 2>&1
1956	else
1957	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1958	fi
1959	else
1960	done=true
1961	fi
1962	cpumax=$cputime
1963	done
1964
1965	(( minuten = cputime / 60 ))
1966	(( sekunden = cputime - minuten * 60 ))
1967
1968
1969	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1970	if [[ $do_batch = true ]]
1971	then
1972	done=false
1973	while [[ $done = false ]]
1974	do
1975	if (( memory == 0 ))
1976	then
1977	printf "\n +++ memory demand is undefined"
1978	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1979	printf "\n >>> "
1980	read memory 1>/dev/null 2>&1
1981	else
1982	done=true
1983	fi
1984	done
1985	fi
1986
1987
1988	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1989	if [[ $do_remote = true && -z $remote_username ]]
1990	then
1991	while [[ -z $remote_username ]]
1992	do
1993	printf "\n +++ username on remote host \"$host\" is undefined"
1994	printf "\n >>> Please type username:"
1995	printf "\n >>> "
1996	read remote_username
1997	done
1998	mc="$mc -u$remote_username"
1999	fi
2000
2001	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
2002	if [[ "$login_init_cmd" != "" ]]
2003	then
2004	export init_cmds="${login_init_cmd};"
2005	fi
2006
2007
2008	# set module load command and export for subjob
2009	if [[ "$modules" != "" ]]
2010	then
2011	if [[ $host = lctit ]]
2012	then
2013	export module_calls=". $modules"
2014	else
2015	export module_calls="module load ${modules};"
2016	fi
2017	fi
2018
2019	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2020	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2021	then
2022	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2023	then
2024	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2025	fi
2026	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2027	# then
2028	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2029	# echo "*** module_calls = $module_calls"
2030	# fi
2031	fi
2032
2033
2034	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2035	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2036	then
2037	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2038	then
2039	mpilib=mpt
2040	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2041	then
2042	mpilib=mvapich
2043	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2044	then
2045	mpilib=impi
2046	fi
2047	fi
2048
2049
2050
2051	###########################################################################
2052	# HEADER-AUSGABE
2053	###########################################################################
2054
2055
2056	calltime=$(date)
2057	printf "\n"
2058	# [[ $silent = false ]] && clear
2059	printf "#------------------------------------------------------------------------# \n"
2060	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2061	printf "\| \| \n"
2062	spalte1="called on:"; spalte2=$localhost_realname
2063	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2064	if [[ $local_compile = false ]]
2065	then
2066	if [[ $do_remote = true ]]
2067	then
2068	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2069	else
2070	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2071	fi
2072	else
2073	spalte1="compiling test only!"; spalte2=""
2074	fi
2075	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2076	if [[ -n $numprocs ]]
2077	then
2078	if [[ $run_coupled_model = false ]]
2079	then
2080	spalte1="number of PEs:"; spalte2=$numprocs
2081	else
2082	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2083	fi
2084	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2085	fi
2086	if [[ -n $tasks_per_node ]]
2087	then
2088	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2089	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2090	fi
2091	if [[ $maximum_parallel_io_streams != $numprocs ]]
2092	then
2093	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2094	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2095	fi
2096	if [[ $use_openmp = true ]]
2097	then
2098	spalte1="threads per task:"; spalte2="$threads_per_task"
2099	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2100	fi
2101	printf "\| \| \n"
2102	if [[ $do_compile = true ]]
2103	then
2104	if [[ "$mopts" != "" ]]
2105	then
2106	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2107	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2108	zeile=$(echo "$mopts" \| cut -c46-)
2109	while [[ "$zeile" != "" ]]
2110	do
2111	spalte1=""
2112	spalte2=$(echo "$zeile" \| cut -c-45)
2113	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2114	zeile=$(echo "$zeile" \| cut -c46-)
2115	done
2116	fi
2117
2118	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2119	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2120	zeile=$(echo "$cpp_options" \| cut -c46-)
2121	while [[ "$zeile" != "" ]]
2122	do
2123	spalte1=""
2124	spalte2=$(echo "$zeile" \| cut -c-45)
2125	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2126	zeile=$(echo "$zeile" \| cut -c46-)
2127	done
2128
2129	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2130	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2131	zeile=$(echo "$fopts" \| cut -c46-)
2132	while [[ "$zeile" != "" ]]
2133	do
2134	spalte1=""
2135	spalte2=$(echo "$zeile" \| cut -c-45)
2136	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2137	zeile=$(echo "$zeile" \| cut -c46-)
2138	done
2139
2140	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2141	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2142	zeile=$(echo "$lopts" \| cut -c46-)
2143	while [[ "$zeile" != "" ]]
2144	do
2145	spalte1=""
2146	spalte2=$(echo "$zeile" \| cut -c-45)
2147	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2148	zeile=$(echo "$zeile" \| cut -c46-)
2149	done
2150
2151	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2152	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2153	zeile=$(echo "$modules" \| cut -c46-)
2154	while [[ "$zeile" != "" ]]
2155	do
2156	spalte1=""
2157	spalte2=$(echo "$zeile" \| cut -c-45)
2158	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2159	zeile=$(echo "$zeile" \| cut -c46-)
2160	done
2161
2162	spalte1="main program:"; spalte2=$mainprog
2163	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2164	else
2165	spalte1=executable:; spalte2=$executable
2166	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2167	fi
2168	printf "\| \| \n"
2169	spalte1="base name of files:"; spalte2=$fname
2170	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2171	if [[ $fname != $afname ]]
2172	then
2173	spalte1="base name of input files:"; spalte2=$afname
2174	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2175	fi
2176	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2177	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2178	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2179	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2180
2181	if [[ "$ocean_file_appendix" = true ]]
2182	then
2183	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2184	fi
2185
2186	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2187	then
2188	spalte1="memory demand / PE":; spalte2="$memory MB"
2189	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2190	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2191	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2192	fi
2193
2194	if [[ $do_compile = true ]]
2195	then
2196	printf "\| \| \n"
2197	printf "\| Files to be compiled: \| \n"
2198	zeile=$source_list
2199	while [[ "$zeile" != "" ]]
2200	do
2201	linestart=$(echo $zeile \| cut -c-70)
2202	printf "\| %-70s \| \n" "$linestart"
2203	zeile=$(echo "$zeile" \| cut -c71-)
2204	done
2205	fi
2206	printf "#------------------------------------------------------------------------#"
2207
2208
2209
2210	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2211	if [[ $do_trace = true ]]
2212	then
2213	(( i = 0 ))
2214	while (( i < iin ))
2215	do
2216	(( i = i + 1 ))
2217	if (( i == 1 ))
2218	then
2219	printf "\n\n >>> INPUT-file assignments:\n"
2220	fi
2221	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2222	done
2223	(( i = 0 ))
2224	while (( i < iout ))
2225	do
2226	(( i = i + 1 ))
2227	if (( i == 1 ))
2228	then
2229	printf "\n\n >>> OUTPUT-file assignments:\n"
2230	fi
2231	printf "\n ${localout[$i]} : ${pathout[$i]}"
2232	done
2233	(( i = 0 ))
2234	while (( i < iic ))
2235	do
2236	(( i = i + 1 ))
2237	if (( i == 1 ))
2238	then
2239	printf "\n\n >>> INPUT-commands:\n"
2240	fi
2241	printf "\n ${in_command[$i]}"
2242	done
2243	(( i = 0 ))
2244	while (( i < ioc ))
2245	do
2246	(( i = i + 1 ))
2247	if (( i == 1 ))
2248	then
2249	printf "\n\n >>> OUTPUT-commands:\n"
2250	fi
2251	printf "\n ${out_command[$i]}"
2252	done
2253	fi
2254
2255
2256	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2257	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2258	then
2259	antwort=dummy
2260	printf "\n\n"
2261	printf " >>> everything o.k. (y/n) ? "
2262	while read antwort
2263	do
2264	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2265	then
2266	printf " >>> everything o.k. (y/n) ? "
2267	else
2268	break
2269	fi
2270	done
2271	if [[ $antwort = n \|\| $antwort = N ]]
2272	then
2273	locat=user_abort; (( iec = 0 )); exit
2274	fi
2275	if [[ $do_batch = true ]]
2276	then
2277	printf " >>> batch-job will be created and submitted"
2278	else
2279	if [[ $local_compile = false ]]
2280	then
2281	printf " >>> MRUN will now continue to execute on this machine"
2282	else
2283	printf " >>> a test compilation will now be carried out on this machine"
2284	fi
2285	fi
2286	fi
2287
2288
2289	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2290	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2291	check_depository="${working_directory}/trunk/UTIL"
2292	check_sources="${working_directory}/tmp_check_namelist_files"
2293	skip_check=false
2294
2295	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2296	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2297	then
2298	skip_check=true
2299	reason="run on remote host or parameter file check has not been compiled."
2300	fi
2301	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2302	then
2303	skip_check=true
2304	reason="parameter file check has not been compiled."
2305	fi
2306
2307	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2308	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2309	then
2310	skip_check=true
2311	reason="serial run."
2312	fi
2313
2314	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2315	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2316	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2317	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2318	if [[ $check_namelist_files == false ]]
2319	then
2320	skip_check=true
2321	reason="-z option set."
2322	fi
2323
2324	if [[ $fromhost != $localhost ]]
2325	then
2326	skip_check=true
2327	reason="submitting host is local host."
2328	fi
2329
2330	if [[ $run_coupled_model == true ]]
2331	then
2332	skip_check=true
2333	reason="coupled run."
2334	fi
2335
2336	if [[ $restart_run == true ]]
2337	then
2338	skip_check=true
2339	reason="restart run."
2340	fi
2341
2342	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2343	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2344	last_char=`echo $filename_input \| cut -c $last_char_int`
2345	if [[ "$last_char" == "f" ]]
2346	then
2347	skip_check=true
2348	reason="restart run."
2349	fi
2350
2351	if [[ $skip_check == false ]]
2352	then
2353	tmp_check=${working_directory}/tmp_check
2354
2355	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_TOPO"). THIS FILE IS
2356	# NOT NECESSARILY REQUIRED
2357	line=""
2358	found=false
2359	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2360	while read line1
2361	do
2362	line="$line1"
2363	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2364	then
2365	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2366	found=true
2367	fi
2368	done < $tmp_check
2369
2370	if [[ $found = false ]]
2371	then
2372	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2373	fi
2374
2375	# GET NUDGING PARAMETER FILE SUFFIX (USUALLY "_NUDGE"). THIS FILE IS
2376	# NOT NECESSARILY REQUIRED
2377	line=""
2378	found=false
2379	grep "NUDGING_DATA" $config_file > $tmp_check
2380	while read line1
2381	do
2382	line="$line1"
2383	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2384	then
2385	nudge_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2386	found=true
2387	fi
2388	done < $tmp_check
2389
2390	if [[ $found = false ]]
2391	then
2392	printf "\n +++ no NUDGING list entry found in the configuration file."
2393	fi
2394
2395	# GET LARGE SCALE FORCING PARAMETER FILE SUFFIX (USUALLY "_LSF"). THIS FILE IS
2396	# NOT NECESSARILY REQUIRED
2397	line=""
2398	found=false
2399	grep "LSF_DATA" $config_file > $tmp_check
2400	while read line1
2401	do
2402	line="$line1"
2403	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2404	then
2405	lsf_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2406	found=true
2407	fi
2408	done < $tmp_check
2409
2410	if [[ $found = false ]]
2411	then
2412	printf "\n +++ no LSF list entry found in the configuration file."
2413	fi
2414
2415	rm -rf ${working_directory}/tmp_check
2416
2417	# CHECK IF THE P3DF FILE MUST BE CHECKED
2418	for item in $input_list
2419	do
2420	if [[ "$item" == "restart" ]]
2421	then
2422	check_restart=1
2423	else
2424	check_restart=0
2425	fi
2426	done
2427
2428	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2429	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2430	then
2431	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2432	locat=check_namelist; exit
2433	fi
2434
2435	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2436	if [[ $check_restart == 1 ]]
2437	then
2438
2439	filenamef="${filename_input}f"
2440	if [[ ! -f $filenamef ]]
2441	then
2442	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2443	check_restart=0
2444	answer=dummy
2445	printf "\n\n"
2446
2447	if [[ $silent == false ]]
2448	then
2449	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2450	do
2451	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2452	read answer
2453	done
2454	if [[ $answer = a \|\| $answer = A ]]
2455	then
2456	printf "\n +++ Aborting...."
2457	locat=normal; exit
2458	fi
2459	fi
2460	else
2461	check_restart=1
2462	fi
2463	fi
2464
2465	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2466	mkdir $check_sources
2467	cd $check_sources
2468
2469
2470	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2471	if [[ -d $add_source_path ]]
2472	then
2473	printf "\n\n *** copying files from $check_depository"
2474	cp $check_depository/check_namelist_files.tar ./
2475
2476	printf "\n\n *** untar of makefile and source files in $check_sources"
2477	tar -xf check_namelist_files.tar > /dev/null 2>&1
2478
2479	printf "\n\n *** adding user code."
2480	cp $add_source_path/* ./
2481	touch check_namelist_files.f90
2482
2483	# GET COMPILER OPTIONS AND PERFORM MAKE
2484	printf "\n\n *** compiling code if necessary...\n"
2485
2486	# workaround for batch jobs on local machine (lcxe6)
2487	if [[ $do_batch == true && $do_remote == false ]]
2488	then
2489	eval $init_cmds
2490	fi
2491
2492	# GET CHECK OPTIONS
2493	line=""
2494	found=false
2495
2496	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2497
2498	while read line1
2499	do
2500
2501	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2502	then
2503	line="$line1"
2504	fi
2505
2506	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2507	then
2508	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2509	line="$line "
2510	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2511	found=true
2512	fi
2513
2514	done < $tmp_check
2515	copts_check="$copts_check -D__check -D__parallel"
2516
2517	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2518
2519	# GET MAKE OUTPUT
2520	if [[ $? != 0 ]]
2521	then
2522	printf "\n +++ error during make."
2523	answer=dummy
2524	printf "\n\n"
2525	if [[ $silent == false ]]
2526	then
2527	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2528	do
2529	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2530	read answer
2531	done
2532	if [[ $answer = a \|\| $answer = A ]]
2533	then
2534	printf "\n +++ Aborting..."
2535	rm -rf $check_sources
2536	locat=normal; exit
2537	else
2538	skip_check=true
2539	fi
2540	else
2541	skip_check=true
2542	fi
2543	fi
2544	else
2545	cp $PALM_BIN/check_namelist_files.x ./
2546	fi
2547
2548	cp $filename_input ./PARIN
2549	if [[ $check_restart == 1 ]]
2550	then
2551	cp $filenamef ./PARINF
2552	fi
2553
2554	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2555	then
2556	printf "\n *** adding topography data"
2557	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2558
2559	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2560	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2561	# WHICH REQUIRE SUFFICIENT MEMORY
2562	ulimit -s unlimited
2563	fi
2564
2565	if [[ -f ${pathname}/${fname}${nudge_suffix} && $skip_check == false ]]
2566	then
2567	printf "\n *** adding nudging data"
2568	cp ${pathname}/${fname}${nudge_suffix} ./NUDGING_DATA
2569	fi
2570
2571	if [[ -f ${pathname}/${fname}${lsf_suffix} && $skip_check == false ]]
2572	then
2573	printf "\n *** adding large scale forcing data"
2574	cp ${pathname}/${fname}${lsf_suffix} ./LSF_DATA
2575	fi
2576
2577	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2578	cat > ENVPAR << %%END%%
2579	&envpar run_identifier = '$fname', host = '$host',
2580	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2581	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2582	maximum_cpu_time_allowed = ${cpumax}.,
2583	revision = '$global_revision',
2584	local_dvrserver_running = $local_dvrserver_running /
2585
2586	%%END%%
2587
2588	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2589	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2590	then
2591	printf "\n +++ WARNING: check_namelist_files.x not found."
2592	answer=dummy
2593	printf "\n\n"
2594
2595	if [[ $silent == false ]]
2596	then
2597	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2598	do
2599	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2600	read answer
2601	done
2602	if [[ $answer = a \|\| $answer = A ]]
2603	then
2604	printf "\n +++ Aborting..."
2605	rm -rf $check_sources
2606	locat=normal; exit
2607	else
2608	printf "\n *** skipping parameter file check."
2609	fi
2610	fi
2611
2612	elif [[ $skip_check == false ]]
2613	then
2614	# STARTING THE PARAMETER FILE CHECK
2615	printf "\n\n *** starting parameter file check..."
2616
2617	# CHECKING THE P3D FILE
2618	printf "\n\n (1) checking $filename_input"
2619	echo "$numprocs 0 0" > VARIN
2620	errors=`./check_namelist_files.x < VARIN 2>&1`
2621
2622	check_error=false
2623	if [[ "$errors" == "" ]]
2624	then
2625	printf " --> o.k."
2626	else
2627	printf " --> failed."
2628	check_error=true
2629	printf "\n\n $errors"
2630	fi
2631
2632	# CHECKING THE PD3F FILE IF NECESSARY
2633	if [[ $check_restart == 1 && $check_error == false ]]
2634	then
2635	printf "\n\n (2) checking $filenamef"
2636
2637	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2638	# IN &INIPAR LIST
2639	found=false
2640	cat PARINF \| while read line
2641	do
2642	line=$(echo $line\|sed 's/ //g')
2643	if [[ $line == "&inipar" ]]
2644	then
2645	start_search=true
2646	fi
2647
2648	if [[ $start_search == true ]]
2649	then
2650	if [[ $line == "initializing_actions='read_restart_data'" ]]
2651	then
2652	found=true
2653	break
2654	fi
2655	fi
2656
2657	if [[ $line == "/" ]]
2658	then
2659	start_search=false
2660	fi
2661
2662	done
2663
2664	if [[ $found = false ]]
2665	then
2666	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2667	printf "\n in &inipar list in $fname$p3df_suffix."
2668	rm -rf $check_sources
2669	locat=check_namelist; exit
2670	fi
2671
2672	# READ max_user_pr FROM FILES
2673	if [[ -f parin_for_check ]]
2674	then
2675	read max_pr_user < parin_for_check
2676	else
2677	max_user_pr=0
2678	fi
2679
2680	echo "$numprocs 1 $max_pr_user" > VARIN
2681	errors=`./check_namelist_files.x < VARIN 2>&1`
2682
2683	if [[ "$errors" == "" ]]
2684	then
2685	printf " --> o.k."
2686	else
2687	printf " --> failed."
2688	check_error=true
2689	printf "\n\n $errors"
2690	fi
2691	fi
2692
2693	# REPORT ERRORS AND CONTINUE/EXIT
2694	if [[ $check_error == true ]]
2695	then
2696	printf "\n +++ errors found in the parameter file!\n"
2697	answer=dummy
2698	printf "\n\n"
2699
2700	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2701	do
2702	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2703	read answer
2704	done
2705
2706	if [[ $answer = a \|\| $answer = A ]]
2707	then
2708	printf "\n +++ Aborting..."
2709	rm -rf $check_sources
2710	locat=normal; exit
2711	fi
2712	else
2713	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2714	fi
2715	rm -rf $check_sources
2716	fi
2717	else
2718	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2719	fi
2720
2721	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2722	rm -rf $check_sources
2723	cd $working_directory
2724
2725
2726	# DETERMINE PATH FOR MAKE DEPOSITORY
2727	if [[ $do_batch = false \|\| $create_executable_for_batch = true ]]
2728	then
2729
2730	line=""
2731	grep "%depository_path" $config_file > tmp_mrun
2732	while read line
2733	do
2734	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2735	then
2736	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2737	then
2738	global_depository_path=`echo $line \| cut -d" " -s -f2`
2739	fi
2740	fi
2741	done < tmp_mrun
2742
2743	line=""
2744	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2745	while read line
2746	do
2747	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2748	then
2749	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2750	then
2751	local_depository_path=`echo $line \| cut -d" " -s -f2`
2752	fi
2753	fi
2754	done < tmp_mrun
2755
2756	if [[ "$local_depository_path" = "" ]]
2757	then
2758	if [[ "$global_depository_path" != "" ]]
2759	then
2760	local_depository_path=$global_depository_path
2761	else
2762	printf "\n\n +++ no depository path found in configuration file"
2763	printf "\n for local host \"$localhost\" "
2764	printf "\n please set \"\%depository_path\" in configuration file\n"
2765	locat=config_file; exit
2766	fi
2767	fi
2768	eval local_depository_path=$local_depository_path
2769	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2770	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2771
2772
2773	basename=`echo $mainprog \| cut -f1 -d"."`
2774	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2775	if [[ ! -f $make_depository ]]
2776	then
2777	printf "\n"
2778	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2779	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2780	fi
2781
2782	fi
2783
2784
2785	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2786	# CHENDE AKTIONEN DURCHGEFUEHRT
2787	if [[ $do_batch = false ]]
2788	then
2789
2790
2791	# TEMPORAEREN KATALOG ERZEUGEN
2792	mkdir -p $TEMPDIR
2793	chmod go+rx $TEMPDIR
2794	tmpcreate=true
2795
2796
2797	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2798	# TEMPORAERES VERZEICHNIS KOPIEREN
2799	if [[ $do_compile = true ]]
2800	then
2801
2802	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2803	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2804	if [[ $localhost = nech ]]
2805	then
2806	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2807	if mkdir -p $TEMPDIR_COMPILE
2808	then
2809	printf "\n *** \"$TEMPDIR_COMPILE\" "
2810	printf "\n is generated as temporary directory for cross compiling\n"
2811	else
2812	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2813	printf "\n needed for cross compilation failed"
2814	locat=compile
2815	exit
2816	fi
2817	else
2818	TEMPDIR_COMPILE=$TEMPDIR
2819	fi
2820
2821	cp $make_depository $TEMPDIR_COMPILE
2822	cd $TEMPDIR_COMPILE
2823	tar -xf $make_depository > /dev/null 2>&1
2824	cd - > /dev/null
2825
2826	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2827
2828	else
2829
2830	cp $executable ${TEMPDIR}/a.out
2831
2832	fi
2833
2834
2835	# WECHSEL IN TEMPORAEREN KATALOG
2836	cd $TEMPDIR
2837	printf "\n *** changed to temporary directory: $TEMPDIR"
2838
2839
2840	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2841	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2842	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2843	# ERMITTELN
2844	(( i = 0 ))
2845	while (( i < iout ))
2846	do
2847	(( i = i + 1 ))
2848	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2849	then
2850	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2851	else
2852	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2853	fi
2854	done
2855
2856
2857	# IF REQUIRED, START WITH COMPILING ACTIONS
2858	if [[ $do_compile = true ]]
2859	then
2860
2861
2862	if [[ -f a.out ]]
2863	then
2864
2865	# EXECUTABLE WAS CREATED DURING INTERACTIVE CALL OF MRUN
2866	printf "\n\n\n *** executable a.out found"
2867	printf "\n no compilation required \n"
2868
2869	else
2870
2871	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2872	printf "\n\n\n *** compilation starts \n$striche\n"
2873	printf " *** compilation with make using following options:\n"
2874	printf " make depository: $make_depository"
2875	if [[ "$mopts" != "" ]]
2876	then
2877	printf " make options: $mopts\n"
2878	fi
2879	printf " compilername: $compiler_name\n"
2880	printf " compiler options: $fopts\n"
2881	printf " preprocessor directives: $cpp_options \n"
2882	printf " linker options: $lopts \n"
2883	if [[ "$modules" != "" ]]
2884	then
2885	printf " modules to be load: $modules \n"
2886	fi
2887	printf " source code files: $source_list \n"
2888
2889	if [[ $localhost = nech ]]
2890	then
2891	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2892	cp $TEMPDIR_COMPILE/a.out .
2893	[[ $? != 0 ]] && compile_error=true
2894	rm -rf $TEMPDIR_COMPILE
2895	elif [[ $localhost = ibmh ]]
2896	then
2897	printf " compiler is called via ssh on \"plogin1\" \n"
2898	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2899	[[ ! -f a.out ]] && compile_error=true
2900	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2901	elif [[ $localhost = lcsgib ]]
2902	then
2903	printf " compiler is called via ssh on \"bicegate0\" \n"
2904	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2905	[[ ! -f a.out ]] && compile_error=true
2906	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2907	elif [[ $localhost = lcsgih ]]
2908	then
2909	printf " compiler is called via ssh on \"hicegate0\" \n"
2910	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2911	[[ ! -f a.out ]] && compile_error=true
2912	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2913	elif [[ $localhost = lcflow ]]
2914	then
2915	printf " compiler is called via ssh on \"flow\" \n"
2916	/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2917	[[ ! -f a.out ]] && compile_error=true
2918	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2919	elif [[ $localhost = lccrayf ]]
2920	then
2921	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2922	else
2923	[[ "$init_cmds" != "" ]] && eval $init_cmds
2924	[[ "$module_calls" != "" ]] && eval $module_calls
2925	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2926	fi
2927
2928	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2929	then
2930	printf "\n +++ error occured while compiling or linking"
2931	locat=compile
2932
2933	exit
2934	else
2935	printf "$striche\n *** compilation finished \n"
2936	fi
2937
2938	fi
2939
2940	fi
2941
2942
2943	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2944	if [[ $local_compile = true ]]
2945	then
2946	cd $HOME
2947	rm -rf $TEMPDIR
2948	locat=local_compile; exit
2949	fi
2950
2951
2952	# BEREITSTELLEN DER INPUT-DATEIEN
2953	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2954	(( i = 0 ))
2955	while (( i < iin ))
2956	do
2957	(( i = i + 1 ))
2958	if (( i == 1 ))
2959	then
2960	printf "\n\n *** providing INPUT-files:\n$striche"
2961	fi
2962
2963
2964	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2965	if [[ "${transin[$i]}" = unavailable ]]
2966	then
2967	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2968	then
2969	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2970	printf "\n is not available!"
2971	else
2972	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2973	printf "\n is not available!"
2974	fi
2975	continue
2976	fi
2977
2978	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2979	files_for_pes=false; datentyp=file
2980	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2981	then
2982	files_for_pes=true; datentyp=directory
2983	actionin[$i]=""
2984	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2985	then
2986	actionin[$i]=""
2987	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2988	then
2989	files_for_pes=true; datentyp=directory
2990	actionin[$i]="ar"
2991	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2992	then
2993	actionin[$i]="ar"
2994	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2995	then
2996	files_for_pes=true; datentyp=directory
2997	actionin[$i]="fl"
2998	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2999	then
3000	actionin[$i]="fl"
3001	fi
3002
3003	if [[ $files_for_pes = true ]]
3004	then
3005	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
3006	else
3007	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
3008	fi
3009
3010	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
3011	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
3012	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3013	# SERVER ZU HOLEN
3014	if [[ "${actionin[$i]}" = fl ]]
3015	then
3016	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3017	if [[ $files_for_pes = false ]]
3018	then
3019	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3020	then
3021	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3022	got_tmp[$i]=true
3023	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3024	then
3025	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3026	printf "\n *** trying to use backup copy in \"$WORK\" "
3027	cp $WORK/${frelin[$i]} ${localin[$i]}
3028	else
3029	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3030	printf "\n or \"$tmp_data_catalog\" does not exist!"
3031	printf "\n *** trying to get copy from archive"
3032	actionin[$i]=ar
3033	fi
3034	else
3035	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3036	then
3037	mkdir ${localin[$i]}
3038	cd $tmp_data_catalog/${frelin[$i]}
3039	for file in $(ls *)
3040	do
3041	ln $file $TEMPDIR/${localin[$i]}
3042	done
3043	cd $TEMPDIR
3044	got_tmp[$i]=true
3045	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3046	then
3047	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3048	printf "\n *** trying to use backup copy in \"$WORK\" "
3049	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3050	else
3051	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3052	printf "\n or \"$tmp_data_catalog\" does not exist!"
3053	printf "\n *** trying to get copy from archive"
3054	actionin[$i]=ar
3055	fi
3056	fi
3057	fi
3058
3059
3060	# DATEI LIEGT AUF ARCHIV-SERVER
3061	if [[ "${actionin[$i]}" = ar ]]
3062	then
3063
3064	if [[ $files_for_pes = false ]]
3065	then
3066	printf "\n file will be restored from archive-system ($archive_system)!"
3067	else
3068	printf "\n directory will be restored from archive-system ($archive_system)!"
3069	fi
3070
3071	file_restored=false
3072
3073	if [[ $archive_system = asterix ]]
3074	then
3075	do_stagein=true
3076	(( stagein_anz = 0 ))
3077	while [[ $do_stagein = true ]]
3078	do
3079	if [[ $files_for_pes = false ]]
3080	then
3081	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3082	else
3083	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3084	fi
3085	cat STAGEIN_OUTPUT
3086	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3087	then
3088	file_restored=true
3089	do_stagein=false
3090	else
3091	(( stagein_anz = stagein_anz + 1 ))
3092	if (( stagein_anz == 10 ))
3093	then
3094	printf "\n +++ stagein stoped after 10 tries"
3095	locat=stage
3096	exit
3097	fi
3098	printf "\n +++ restoring from archive failed, trying again:"
3099	sleep 900
3100	fi
3101	done
3102	elif [[ $archive_system = DMF ]]
3103	then
3104	if [[ $files_for_pes = false ]]
3105	then
3106	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3107	locat=DMF
3108	exit
3109	else
3110	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3111	cp -r $ARCHIVE/${frelin[$i]} $PWD
3112	file_restored=true
3113	fi
3114	elif [[ $archive_system = tivoli ]]
3115	then
3116	if [[ $files_for_pes = false ]]
3117	then
3118	if [[ $localhost = lcsgih ]]
3119	then
3120	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3121	else
3122	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3123	fi
3124	else
3125	(( inode = 0 ))
3126	while (( inode < nodes ))
3127	do
3128	if [[ $localhost = lcsgih ]]
3129	then
3130	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3131	else
3132	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3133	fi
3134	(( inode = inode + 1 ))
3135	done
3136	fi
3137	file_restored=true
3138	elif [[ $archive_system = ut ]]
3139	then
3140	if [[ $files_for_pes = false ]]
3141	then
3142	cp $UT/${frelin[$i]} .
3143	else
3144	(( inode = 0 ))
3145	while (( inode < nodes ))
3146	do
3147	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3148	(( inode = inode + 1 ))
3149	done
3150	fi
3151	file_restored=true
3152	else
3153	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3154	locat=rearchive
3155	exit
3156	fi
3157
3158	if [[ $file_restored = true ]]
3159	then
3160
3161	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3162	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3163	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3164	if [[ $files_for_pes = false ]]
3165	then
3166	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3167	else
3168	mkdir $tmp_data_catalog/${frelin[$i]}
3169	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3170	fi
3171	got_tmp[$i]=true
3172
3173	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3174	mv ${frelin[$i]} ${localin[$i]}
3175
3176	fi
3177	fi
3178
3179
3180	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3181	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3182	then
3183
3184	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3185	then
3186
3187	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3188	printf "\n file will be provided for $numprocs processors"
3189	mkdir ${localin[$i]}
3190	ival=$numprocs
3191	(( ii = 0 ))
3192	while (( ii <= ival-1 ))
3193	do
3194	if (( ii < 10 ))
3195	then
3196	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3197	elif (( ii < 100 ))
3198	then
3199	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3200	elif (( ii < 1000 ))
3201	then
3202	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3203	else
3204	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3205	fi
3206	(( ii = ii + 1 ))
3207	done
3208
3209	else
3210
3211	if [[ $files_for_pes = true ]]
3212	then
3213
3214	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3215	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3216	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3217	# PER MOVE UMBENANNT WERDEN
3218	printf "\n providing $numprocs files for the respective processors"
3219	mkdir ${localin[$i]}
3220	if [[ $link_local_input = true ]]
3221	then
3222	printf " using ln -f\n"
3223	cd ${absnamein[$i]}
3224	for file in $(ls *)
3225	do
3226	ln -f $file ${localin[$i]}
3227	done
3228	cd $TEMPDIR
3229	fi
3230	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3231	if [[ ! -f "${localin[$i]}/_0000" ]]
3232	then
3233	if [[ $link_local_input = true ]]
3234	then
3235	printf " ln failed for .../_0000, using cp...\n"
3236	fi
3237	cp -r ${absnamein[$i]}/* ${localin[$i]}
3238	fi
3239
3240	else
3241	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3242	if [[ $link_local_input = true ]]
3243	then
3244	printf " using ln -f\n"
3245	ln -f ${absnamein[$i]} ${localin[$i]}
3246	fi
3247	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3248	if [[ ! -f "${localin[$i]}" ]]
3249	then
3250	if [[ $link_local_input = true ]]
3251	then
3252	printf " ln failed, using cp...\n"
3253	fi
3254	cp ${absnamein[$i]} ${localin[$i]}
3255	fi
3256	fi
3257	fi
3258	fi
3259
3260	done
3261	if (( i != 0 ))
3262	then
3263	printf "\n$striche\n *** all INPUT-files provided \n"
3264	fi
3265
3266
3267	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3268	(( i = 0 ))
3269	while (( i < iic ))
3270	do
3271	(( i = i + 1 ))
3272	if (( i == 1 ))
3273	then
3274	printf "\n\n *** execution of INPUT-commands:\n$striche"
3275	fi
3276	printf "\n >>> ${in_command[$i]}"
3277	eval ${in_command[$i]}
3278	if (( i == iic ))
3279	then
3280	printf "\n$striche\n"
3281	fi
3282	done
3283
3284
3285	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3286	cpurest=${cpumax}.
3287
3288
3289	# START DVR STREAMING SERVER
3290	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3291	then
3292	if [[ "$dvr_server" != "" ]]
3293	then
3294
3295	printf "\n\n *** preparing the dvr streaming server configuration file"
3296
3297	# Check, if a dvr server is already running
3298	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3299	if [[ "$running_dvrserver_id" != "" ]]
3300	then
3301
3302	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3303	printf "\n This server is used instead starting a new one!"
3304	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3305
3306	else
3307
3308	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3309	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3310	then
3311	cp ${PALM_BIN}/.dvrserver.config .
3312
3313	# Entering the BASEDIR, UID and GID into this file
3314	user_id=`id -u`
3315	group_id=`id -g`
3316	# & is needed as seperator, because TEMPDIR contains /
3317	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3318	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3319	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3320	mv .dvrserver.3 .dvrserver.config
3321	rm .dvrserver.1 .dvrserver.2
3322
3323	# Start dvr server in background, get his id and print on terminal
3324	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3325	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3326	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3327	local_dvrserver_running=.TRUE.
3328	else
3329	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3330	printf "\n \"$PALM_BIN\" "
3331	locat=dvr
3332	exit
3333	fi
3334
3335	fi
3336
3337	else
3338	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3339	fi
3340	fi
3341
3342
3343	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3344	# LESEN VON PALM)
3345	cat > ENVPAR << %%END%%
3346	&envpar run_identifier = '$fname', host = '$localhost',
3347	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3348	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3349	maximum_cpu_time_allowed = ${cpumax}.,
3350	revision = '$global_revision',
3351	local_dvrserver_running = $local_dvrserver_running /
3352
3353	%%END%%
3354
3355
3356	# PROGRAMMSTART
3357	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3358	PATH=$PATH:$TEMPDIR
3359
3360	# MPI debug option (argument checking, slows down execution due to increased latency)
3361	if [[ "$mpi_debug" = true ]]
3362	then
3363	export MPI_CHECK_ARGS=1
3364	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3365	fi
3366
3367	if [[ "$totalview" = true ]]
3368	then
3369	printf "\n *** totalview debugger will be used"
3370	tv_opt="-tv"
3371	else
3372	tv_opt=""
3373	fi
3374
3375	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3376	then
3377	if [[ "$ENVIRONMENT" = BATCH ]]
3378	then
3379	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3380	then
3381	printf "\n +++ debug is allowed in interactive mode only"
3382	locat=debug
3383	exit
3384	fi
3385	fi
3386	if [[ $localhost = ibmh ]]
3387	then
3388
3389	# SETUP THE IBM MPI ENVIRONMENT
3390	export MP_SHARED_MEMORY=yes
3391	export AIXTHREADS_SCOPE=S
3392	export OMP_NUM_THREADS=$threads_per_task
3393	export AUTHSTATE=files
3394	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3395
3396	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3397	export MP_ADAPTER_USE=shared
3398	export MP_CPU_USE=multiple
3399	export MP_TIMEOUT=1200
3400
3401	unset MP_TASK_AFFINITY
3402
3403	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3404	#(( ii = 1 ))
3405	#while (( ii <= $numprocs ))
3406	#do
3407	# echo $localhost_realname >> hostfile
3408	# (( ii = ii + 1 ))
3409	#done
3410	#export MP_HOSTFILE=hostfile
3411
3412	if [[ "$LOADLBATCH" = yes ]]
3413	then
3414	totalview poe a.out $ROPTS
3415	else
3416	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3417	export TVDSVRLAUNCHCMD=ssh
3418	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3419	fi
3420	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3421	then
3422	# CURRENTLY NO DEBUGGER ON LCSGI
3423	if [[ $run_coupled_model = true ]]
3424	then
3425	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3426	locat=debug
3427	exit
3428	else
3429	echo "no_coupling" > runfile_atmos
3430	fi
3431	(( ii = $numprocs / $threads_per_task ))
3432	export OMP_NUM_THREADS=$threads_per_task
3433	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3434	if [[ $threads_per_task != 1 ]]
3435	then
3436	printf "\n threads per task: $threads_per_task"
3437	fi
3438	printf "\n\n"
3439	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3440	then
3441	# export MPI_LAUNCH_TIMEOUT=360
3442	if [[ "$totalview" = true ]]
3443	then
3444	printf "\n running totalview debugger"
3445	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3446	else
3447	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3448	fi
3449	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3450	then
3451	# ulimit -s 300000 # A too large stack size causes problems
3452	# export MV2_NUM_PORTS=2
3453	# export MV2_CPU_MAPPING=0:1:2:3
3454	if [[ "$totalview" = true ]]
3455	then
3456	printf "\n running totalview debugger"
3457	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3458	else
3459	mpiexec ./a.out $ROPTS < runfile_atmos
3460	fi
3461	fi
3462	else
3463	printf "\n +++ no debug available on \"$localhost\" "
3464	printf "\n or not implemented in mrun so far"
3465	locat=debug
3466	exit
3467	fi
3468
3469	# end debug mode
3470	else
3471
3472	# normal execution
3473	if [[ -n $numprocs ]]
3474	then
3475	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3476	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3477	then
3478	# SETUP THE IBM MPI ENVIRONMENT
3479	if [[ $host != ibmh && $host != ibmkisti ]]
3480	then
3481	export MP_SHARED_MEMORY=yes
3482	export AIXTHREAD_SCOPE=S
3483	export OMP_NUM_THREADS=$threads_per_task
3484	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3485	export AUTHSTATE=files
3486	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3487	# export MP_PRINTENV=yes
3488
3489	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3490	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3491	export MP_WAIT_MODE=poll
3492	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3493	fi
3494
3495	if [[ $host = ibmkisti ]]
3496	then
3497	export LANG=en_US
3498	export MP_SHARED_MEMORY=yes
3499	if [[ $threads_per_task = 1 ]]
3500	then
3501	export MP_SINGLE_THREAD=yes
3502	export MEMORY_AFFINITY=MCM
3503	else
3504	export OMP_NUM_THREADS=$threads_per_task
3505	fi
3506	fi
3507
3508	if [[ "$LOADLBATCH" = yes ]]
3509	then
3510	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3511	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3512	then
3513	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3514	else
3515	if [[ $run_coupled_model = false ]]
3516	then
3517	if [[ "$ocean_file_appendix" = true ]]
3518	then
3519	echo "precursor_ocean" > runfile_atmos
3520	else
3521	echo "precursor_atmos" > runfile_atmos
3522	fi
3523	else
3524	(( iia = $numprocs_atmos / $threads_per_task ))
3525	(( iio = $numprocs_ocean / $threads_per_task ))
3526	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3527	printf "\n using $coupled_mode coupling"
3528	printf "\n\n"
3529	echo "coupled_run $iia $iio" > runfile_atmos
3530	fi
3531	poe ./a.out $ROPTS < runfile_atmos
3532	fi
3533	else
3534	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3535	then
3536	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3537	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3538	then
3539	if [[ -f $hostfile ]]
3540	then
3541	cp $hostfile hostfile
3542	else
3543	(( ii = 1 ))
3544	while (( ii <= $numprocs ))
3545	do
3546	echo $localhost_realname >> hostfile
3547	(( ii = ii + 1 ))
3548	done
3549	fi
3550	export MP_HOSTFILE=hostfile
3551	if [[ $run_coupled_model = false ]]
3552	then
3553	if [[ "$ocean_file_appendix" = true ]]
3554	then
3555	echo "precursor_ocean" > runfile_atmos
3556	else
3557	echo "precursor_atmos" > runfile_atmos
3558	fi
3559	else
3560	(( iia = $numprocs_atmos / $threads_per_task ))
3561	(( iio = $numprocs_ocean / $threads_per_task ))
3562	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3563	printf "\n using $coupled_mode coupling"
3564	printf "\n\n"
3565	echo "coupled_run $iia $iio" > runfile_atmos
3566	fi
3567	if [[ $localhost = ibmy ]]
3568	then
3569	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3570	else
3571	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3572	fi
3573
3574	else
3575	if [[ "$host_file" = "" ]]
3576	then
3577	printf "\n +++ no hostfile given in configuration file"
3578	locat=config_file
3579	exit
3580	else
3581	eval host_file=$host_file
3582	fi
3583	export MP_HOSTFILE=$host_file
3584	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3585	fi
3586	fi
3587	elif [[ $host = nech \|\| $host = necriam ]]
3588	then
3589	(( ii = nodes ))
3590	if [[ $ii = 1 ]]
3591	then
3592	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3593	export MPIPROGINF=YES
3594	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3595	echo "*** execution on single node with mpirun"
3596	mpirun -np $numprocs ./a.out $ROPTS
3597	else
3598	(( i = 0 ))
3599	while (( i < ii ))
3600	do
3601	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3602	(( i = i + 1 ))
3603	done
3604
3605	echo "#!/bin/sh" > mpi_exec_shell
3606	echo " " >> mpi_exec_shell
3607	echo "set -u" >> mpi_exec_shell
3608	echo "F_ERRCNT=0" >> mpi_exec_shell
3609	echo "MPIPROGINV=YES" >> mpi_exec_shell
3610	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3611	echo "cpurest=$cpurest" >> mpi_exec_shell
3612	echo "fname=$fname" >> mpi_exec_shell
3613	echo "localhost=$localhost" >> mpi_exec_shell
3614	echo "return_addres=$return_addres" >> mpi_exec_shell
3615	echo "return_username=$return_username" >> mpi_exec_shell
3616	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3617	echo "write_binary=$write_binary" >> mpi_exec_shell
3618	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3619	echo " " >> mpi_exec_shell
3620	echo "export F_ERRCNT" >> mpi_exec_shell
3621	echo "export MPIPROGINV" >> mpi_exec_shell
3622	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3623	echo "export cpurest" >> mpi_exec_shell
3624	echo "export fname" >> mpi_exec_shell
3625	echo "export localhost" >> mpi_exec_shell
3626	echo "export return_addres" >> mpi_exec_shell
3627	echo "export return_username" >> mpi_exec_shell
3628	echo "export tasks_per_node" >> mpi_exec_shell
3629	echo "export write_binary" >> mpi_exec_shell
3630	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3631	echo " " >> mpi_exec_shell
3632	echo "exec ./a.out" >> mpi_exec_shell
3633
3634	chmod u+x mpi_exec_shell
3635	export MPIPROGINF=YES
3636	mpirun -f multinode_config &
3637	wait
3638
3639	fi
3640	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3641	then
3642
3643	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3644	# DOES NOT EXIST
3645	if [[ $host != lccrayb &&$host != lccrayf && $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3646	then
3647	if [[ -f $hostfile ]]
3648	then
3649	cp $hostfile hostfile
3650	(( ii = $numprocs / $threads_per_task ))
3651	else
3652	(( ii = 1 ))
3653	while (( ii <= $numprocs / $threads_per_task ))
3654	do
3655	echo $localhost_realname >> hostfile
3656	(( ii = ii + 1 ))
3657	done
3658	fi
3659	eval zeile=\"`head -n $ii hostfile`\"
3660	printf "\n *** running on: $zeile"
3661	fi
3662
3663	(( ii = $numprocs / $threads_per_task ))
3664	export OMP_NUM_THREADS=$threads_per_task
3665	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3666	if [[ $threads_per_task != 1 ]]
3667	then
3668	# increase stack size to unlimited, because large runs
3669	# may abort otherwise
3670	ulimit -Ss unlimited
3671	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3672	fi
3673	if [[ $run_coupled_model = false ]]
3674	then
3675	if [[ "$ocean_file_appendix" = true ]]
3676	then
3677	echo "precursor_ocean" > runfile_atmos
3678	else
3679	echo "precursor_atmos" > runfile_atmos
3680	fi
3681	printf "\n\n"
3682	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3683	then
3684	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3685	then
3686	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3687	# export MPI_DSM_DISTRIBUTE=1
3688	# MPI_DSM_CPULIST: pin MPI processes to cores
3689	if [[ $use_openmp = false ]]
3690	then
3691	if [[ "$sgi_feature" = ice2 ]]
3692	then
3693	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3694	else
3695	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3696	fi
3697	else
3698	unset MPI_DSM_CPULIST
3699	fi
3700	# MPI_IB_RAILS: use both IB rails on ICE2
3701	export MPI_BUFS_PER_HOST=512
3702	export MPI_IB_RAILS=2
3703	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3704	export MPI_CONNECTIONS_THRESHOLD=8192
3705	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3706	export MPI_TYPE_DEPTH=20
3707	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3708	export MPI_GROUP_MAX=64
3709	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3710	if [[ $use_openmp = true ]]
3711	then
3712	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3713	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3714	else
3715	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3716	fi
3717
3718	# next is test for openmp usage
3719	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3720	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3721	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3722	then
3723	export MV2_NUM_PORTS=2
3724	# The default setting of MV2_CPU_MAPPING gives best results
3725	# export MV2_ENABLE_AFFINITY=1
3726	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3727	# if [[ "$sgi_feature" = ice2 ]]
3728	# then
3729	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3730	# else
3731	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3732	# fi
3733	if [[ $use_openmp = true ]]
3734	then
3735	unset MV2_CPU_MAPPING
3736	export MV2_ENABLE_AFFINITY=0
3737	fi
3738	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3739	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3740	if [[ $use_openmp = true ]]
3741	then
3742	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3743	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3744	else
3745	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3746	fi
3747	elif [[ "$mpilib" = impi ]]
3748	then
3749	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3750	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3751	fi
3752	elif [[ $host = lccrayb ]]
3753	then
3754	echo "--- aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos"
3755	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3756	# aprun -n $ii -ss -r2 -j1 a.out $ROPTS < runfile_atmos
3757	elif [[ $host = lccrayf ]]
3758	then
3759	aprun -n $ii -N $tasks_per_node -m ${memory}M a.out $ROPTS < runfile_atmos
3760	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3761	then
3762	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3763	elif [[ $host = lcflow ]]
3764	then
3765	mpirun -bootstrap sge -np $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3766	elif [[ $host = lcsb ]]
3767	then
3768	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3769	elif [[ $host = lckiaps ]]
3770	then
3771	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3772	elif [[ $host = lckyu* ]]
3773	then
3774	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3775	else
3776	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3777	fi
3778	else
3779
3780	# currently there is no full MPI-2 support on ICE and XT4
3781	(( iia = $numprocs_atmos / $threads_per_task ))
3782	(( iio = $numprocs_ocean / $threads_per_task ))
3783	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3784	printf "\n using $coupled_mode coupling"
3785	printf "\n\n"
3786
3787	if [[ $coupled_mode = "mpi2" ]]
3788	then
3789	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3790	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3791	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3792	then
3793
3794	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3795	then
3796	# export MPI_LAUNCH_TIMEOUT=360
3797	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3798	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3799	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3800	then
3801	# ulimit -s 300000 # A too large stack size causes problems
3802	# export MV2_NUM_PORTS=2
3803	# export MV2_CPU_MAPPING=0:1:2:3
3804	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3805	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3806	fi
3807
3808	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3809	then
3810
3811	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3812	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3813
3814	else
3815	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3816	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3817	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3818	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3819	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3820	fi
3821	wait
3822
3823	else
3824
3825	echo "coupled_run $iia $iio" > runfile_atmos
3826	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3827	then
3828
3829	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3830	then
3831	# export MPI_LAUNCH_TIMEOUT=360
3832	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3833	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3834	then
3835	# ulimit -s 300000 # A too large stack size causes problems
3836	# export MV2_NUM_PORTS=2
3837	# export MV2_CPU_MAPPING=0:1:2:3
3838	mpiexec ./a.out $ROPTS < runfile_atmos
3839	fi
3840
3841	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3842	then
3843
3844	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3845
3846	elif [[ $host = lck \|\| $host = lckordi ]]
3847	then
3848
3849	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3850
3851	elif [[ $host = lckyu* ]]
3852	then
3853
3854	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3855
3856	fi
3857	wait
3858	fi
3859
3860	fi
3861	elif [[ $host = lckyoto ]]
3862	then
3863	set -xv
3864	export P4_RSHCOMMAND=plesh
3865	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3866	if [[ "$ENVIRONMENT" = BATCH ]]
3867	then
3868	if [[ "$cond2" = fujitsu ]]
3869	then
3870	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3871	elif [[ "cond2" = pgi ]]
3872	then
3873	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3874	else
3875	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3876	fi
3877	else
3878	if [[ "$cond2" = "" ]]
3879	then
3880	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3881	else
3882	mpirun -np $numprocs ./a.out $ROPTS
3883	fi
3884	fi
3885	set +xv
3886	elif [[ $host = lctit ]]
3887	then
3888	export OMP_NUM_THREADS=$threads_per_task
3889	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3890	if [[ "$threads_per_task" != 1 ]]
3891	then
3892	export MV2_ENABLE_AFFINITY=0
3893	fi
3894	echo "----- PBS_NODEFILE content:"
3895	cat $PBS_NODEFILE
3896	echo "-----"
3897	(( ii = $numprocs / $threads_per_task ))
3898	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3899	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3900	else
3901	mpprun -n $numprocs a.out $ROPTS
3902	fi
3903	[[ $? != 0 ]] && execution_error=true
3904
3905
3906	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3907	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3908	then
3909	apprentice
3910	fi
3911	else
3912	a.out $ROPTS
3913	fi
3914	fi
3915	if [[ $? != 0 \|\| $execution_error = true ]]
3916	then
3917
3918	# ABBRUCH BEI LAUFZEITFEHLER
3919	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3920	printf "\n +++ runtime error occured"
3921	locat=execution
3922	exit
3923	else
3924	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3925	printf "\n$striche\n *** execution finished \n"
3926
3927	# Stop the dvr streaming server and process the dvr output in order
3928	# to create dvrs- and html-files containing all streams
3929	if [[ "$dvrserver_id" != "" ]]
3930	then
3931	kill $dvrserver_id
3932	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3933
3934	# If there is a directory, data have been output by the
3935	# streaming server. Otherwise, user has chosen dvrp_output=local
3936	if [[ -d DATA_DVR ]]
3937	then
3938
3939	# Add the current dvr configuration file to the dvr output
3940	# directory
3941	cp .dvrserver.config DATA_DVR
3942
3943	# Process the dvr output (option -s for also generating
3944	# sequence mode data)
3945	process_dvr_output -d DATA_DVR -f $fname -s
3946
3947	else
3948
3949	# Process the local output
3950	process_dvr_output -l -d DATA_DVR -f $fname
3951
3952	fi
3953
3954	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3955	then
3956
3957	# Process dvr output generated in local mode (dvrp_output=local)
3958	process_dvr_output -l -d DATA_DVR -f $fname
3959
3960	fi
3961	fi
3962
3963
3964
3965	# Call of combine_plot_fields in order to merge single files written
3966	# by each PE into one file.
3967	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3968	then
3969	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3970	printf "\n 2d- and/or 3d-data may be incomplete!"
3971	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3972	elif [[ "$combine_plot_fields" == true ]]
3973	then
3974	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3975	combine_plot_fields${block}.x
3976	else
3977	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3978	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3979	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3980	fi
3981
3982
3983
3984	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3985	(( i = 0 ))
3986	while (( i < ioc ))
3987	do
3988	(( i = i + 1 ))
3989	if (( i == 1 ))
3990	then
3991	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3992	fi
3993	printf "\n >>> ${out_command[$i]}"
3994	eval ${out_command[$i]}
3995	if (( i == ioc ))
3996	then
3997	printf "\n$striche\n"
3998	fi
3999	done
4000
4001
4002	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
4003	if [[ $do_trace = true ]]
4004	then
4005	printf "\n\n"
4006	ls -al
4007	fi
4008
4009
4010
4011	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
4012	(( i = 0 ))
4013	while (( i < iout ))
4014	do
4015	(( i = i + 1 ))
4016	if (( i == 1 ))
4017	then
4018	printf "\n\n *** saving OUTPUT-files:\n$striche"
4019	fi
4020
4021	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
4022	files_for_pes=false; filetyp=file
4023	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
4024	then
4025	files_for_pes=true; filetyp=directory
4026	actionout[$i]=""
4027	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
4028	then
4029	actionout[$i]=""
4030	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
4031	then
4032	files_for_pes=true; filetyp=directory
4033	actionout[$i]="ar"
4034	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
4035	then
4036	actionout[$i]="ar"
4037	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4038	then
4039	files_for_pes=true; filetyp=directory
4040	actionout[$i]="fl"
4041	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4042	then
4043	actionout[$i]="fl"
4044	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4045	then
4046	files_for_pes=true; filetyp=directory
4047	actionout[$i]="tr"
4048	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4049	then
4050	actionout[$i]="tr"
4051	fi
4052
4053	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4054	then
4055	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4056	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4057	then
4058	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4059	else
4060
4061
4062	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4063	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4064	# REMOTE-RECHNUNGEN
4065	if [[ "${actionout[$i]}" = tr ]]
4066	then
4067	if [[ $localhost != $fromhost ]]
4068	then
4069	if [[ $files_for_pes = false ]]
4070	then
4071	cps=""
4072	cst=""
4073	else
4074	cps=-c
4075	cst="/"
4076	fi
4077	if [[ $localhost = nech ]]
4078	then
4079
4080	# TRANSFER IN EIGENSTAENDIGEM JOB
4081	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4082	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4083	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4084	if [[ $files_for_pes = false ]]
4085	then
4086	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4087	else
4088	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4089	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4090	fi
4091
4092	echo "set -x" > transfer_${localout[$i]}
4093	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4094
4095	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4096	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4097	printf "\n or higher cycle\n"
4098	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4099
4100	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4101
4102	if [[ $localhost = nech ]]
4103	then
4104	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4105	else
4106	if [[ "$LOGNAME" = b323013 ]]
4107	then
4108	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4109	else
4110	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4111	fi
4112	fi
4113
4114	else
4115
4116	# TRANSFER INNERHALB DIESES JOBS
4117	transfer_failed=false
4118	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4119	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4120	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4121	[[ $? != 0 ]] && transfer_failed=true
4122
4123	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4124	# LOKALER MASCHINE ANLEGEN
4125	if [[ $transfer_failed = true ]]
4126	then
4127	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4128	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4129
4130	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4131	# ANLEGEN.
4132	eval local_catalog=${pathout[$i]}
4133	if [[ ! -d $local_catalog ]]
4134	then
4135	printf " *** local directory does not exist. Trying to create:\n"
4136	printf " $local_catalog \n"
4137	mkdir -p $local_catalog
4138	fi
4139	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4140	transfer_problems=true
4141	fi
4142	fi
4143	else
4144
4145	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4146	actionout[$i]=""
4147	fi
4148	fi
4149
4150
4151	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4152	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4153	# REMOTE-RECHNUNGEN
4154	if [[ "${actionout[$i]}" = tra ]]
4155	then
4156	if [[ $localhost != $fromhost ]]
4157	then
4158	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4159	then
4160
4161	# TRANSFER IN EIGENSTAENDIGEM JOB
4162	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4163	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4164	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4165	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4166
4167	echo "set -x" > transfer_${localout[$i]}
4168	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4169
4170	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4171	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4172	printf "\n or higher cycle\n"
4173	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4174
4175	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4176
4177	if [[ $localhost = nech ]]
4178	then
4179	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4180	else
4181	if [[ $LOGNAME = b323013 ]]
4182	then
4183	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4184	else
4185	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4186	fi
4187	fi
4188
4189	else
4190
4191	# TRANSFER INNERHALB DIESES JOBS
4192	transfer_failed=false
4193	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4194	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4195	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4196	[[ $? != 0 ]] && transfer_failed=true
4197
4198	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4199	# LOKALER MASCHINE ANLEGEN
4200	if [[ $transfer_failed = true ]]
4201	then
4202	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4203	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4204
4205	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4206	# ANLEGEN
4207	eval local_catalog=${pathout[$i]}
4208	if [[ ! -d $local_catalog ]]
4209	then
4210	printf " *** local directory does not exist. Trying to create:\n"
4211	printf " $local_catalog \n"
4212	mkdir -p $local_catalog
4213	fi
4214
4215	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4216	transfer_problems=true
4217	fi
4218	fi
4219	else
4220
4221	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4222	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4223	actionout[$i]=a
4224	fi
4225	fi
4226
4227
4228	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4229	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4230	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4231	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4232	if [[ "${actionout[$i]}" = fl ]]
4233	then
4234	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4235	chmod g+rx $tmp_data_catalog
4236	if [[ $files_for_pes = false ]]
4237	then
4238	printf "\n >>> OUTPUT: ${localout[$i]} to"
4239	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4240	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4241	else
4242	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4243	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4244	mkdir $tmp_data_catalog/${frelout[$i]}
4245	cd ${localout[$i]}
4246	for file in $(ls *)
4247	do
4248	ln -f $file $tmp_data_catalog/${frelout[$i]}
4249	done
4250	cd $TEMPDIR
4251	fi
4252
4253
4254	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4255	if [[ $store_on_archive_system = true ]]
4256	then
4257
4258	if [[ $archive_system = asterix ]]
4259	then
4260	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4261	if [[ $files_for_pes = false ]]
4262	then
4263	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4264	else
4265	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4266	fi
4267	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4268	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4269	echo "then" >> archive_${frelout[$i]}
4270	echo " do_stageout=false" >> archive_${frelout[$i]}
4271	echo "else" >> archive_${frelout[$i]}
4272	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4273	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4274	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4275	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4276	if [[ $files_for_pes = false ]]
4277	then
4278	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4279	else
4280	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4281	fi
4282	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4283	echo "fi" >> archive_${frelout[$i]}
4284	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4285	elif [[ $archive_system = DMF ]]
4286	then
4287	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4288	if [[ $files_for_pes = false ]]
4289	then
4290	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4291	locat=DMF
4292	exit
4293	else
4294	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4295	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4296	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4297	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4298	fi
4299	elif [[ $archive_system = tivoli ]]
4300	then
4301	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4302	if [[ $files_for_pes = false ]]
4303	then
4304	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4305	echo "set -x" >> archive_${frelout[$i]}
4306	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4307	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4308	else
4309
4310	echo "set -x" >> archive_${frelout[$i]}
4311	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4312	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4313	cd $tmp_data_catalog
4314	all_files=`ls -1 ${frelout[$i]}/*`
4315	cd - > /dev/null
4316	(( inode = 0 ))
4317	(( tp1 = tasks_per_node + 1 ))
4318	while (( inode < nodes ))
4319	do
4320	# echo "*** all_files = \"$all_files\" "
4321	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4322	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4323	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4324	# echo "*** files = \"$files\" "
4325	# echo "*** all_files = \"$all_files\" "
4326	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4327	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4328	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4329	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4330	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4331	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4332	(( inode = inode + 1 ))
4333	done
4334	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4335	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4336	fi
4337	elif [[ $archive_system = ut ]]
4338	then
4339	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4340	if [[ $files_for_pes = false ]]
4341	then
4342	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4343	echo "set -x" >> archive_${frelout[$i]}
4344	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4345	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4346	else
4347
4348	echo "set -x" >> archive_${frelout[$i]}
4349	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4350	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4351	cd $tmp_data_catalog
4352	all_files=`ls -1 ${frelout[$i]}/*`
4353	cd - > /dev/null
4354	(( inode = 0 ))
4355	(( tp1 = tasks_per_node + 1 ))
4356	while (( inode < nodes ))
4357	do
4358	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4359	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4360	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4361	(( inode = inode + 1 ))
4362	done
4363	fi
4364	elif [[ $archive_system = none ]]
4365	then
4366	printf " +++ archiving on $localhost not available!\n"
4367	fi
4368
4369	if [[ $archive_system != none ]]
4370	then
4371	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4372	then
4373	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4374	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4375	elif [[ $localhost = nech ]]
4376	then
4377	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4378	fi
4379	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4380	fi
4381	else
4382	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4383	fi
4384
4385
4386	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4387	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4388	if [[ $files_for_pes = false ]]
4389	then
4390	cat /dev/null > ${pathout[$i]}
4391	else
4392	mkdir -p ${pathout[$i]}
4393	fi
4394
4395	fi
4396
4397
4398	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4399	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4400	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4401	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4402	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4403	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4404	if [[ "${actionout[$i]}" = ar ]]
4405	then
4406	if [[ $files_for_pes = false ]]
4407	then
4408	printf "\n >>> OUTPUT: ${localout[$i]} to"
4409	printf "\n ${pathout[$i]}"
4410	printf "\n File will be copied to archive-system ($archive_system) !\n"
4411	else
4412	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4413	printf "\n ${pathout[$i]}"
4414	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4415	fi
4416	mv ${localout[$i]} ${frelout[$i]}
4417
4418	file_saved=false
4419
4420	if [[ $archive_system = asterix ]]
4421	then
4422	do_stageout=true
4423	(( stageout_anz = 0 ))
4424	while [[ $do_stageout = true ]]
4425	do
4426	if [[ $files_for_pes = false ]]
4427	then
4428	stageout ${frelout[$i]} > STAGE_OUTPUT
4429	else
4430	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4431	fi
4432	cat STAGE_OUTPUT
4433	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4434	then
4435	file_saved=true
4436	do_stageout=false
4437	else
4438	if [[ $files_for_pes = false ]]
4439	then
4440	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4441	else
4442	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4443	fi
4444	(( stageout_anz = stageout_anz + 1 ))
4445	if (( stageout_anz == 10 ))
4446	then
4447	printf "\n +++ stoped after 10 unsuccessful tries!"
4448	archive_save=false
4449	do_stageout=false
4450	else
4451	printf "\n *** new try to store on archive after 15 min:"
4452	sleep 900
4453	fi
4454	fi
4455	done
4456	elif [[ $archive_system = DMF ]]
4457	then
4458	if [[ $files_for_pes = false ]]
4459	then
4460	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4461	locat=DMF
4462	exit
4463	else
4464	rm -rf $ARCHIVE/${frelout[$i]}
4465	cp -r ${frelout[$i]} $ARCHIVE
4466	fi
4467	file_saved=true
4468	elif [[ $archive_system = tivoli ]]
4469	then
4470	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4471	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4472	# GELEGT WERDEN
4473	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4474	chmod g+rx $tmp_data_catalog
4475	if [[ $files_for_pes = false ]]
4476	then
4477	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4478	else
4479	mkdir $tmp_data_catalog/${frelout[$i]}
4480	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4481	fi
4482
4483	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4484	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4485	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4486	if [[ $files_for_pes = false ]]
4487	then
4488	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4489	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4490	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4491	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4492	else
4493	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4494	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4495	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4496	fi
4497
4498	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4499	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4500	file_saved=true
4501
4502	elif [[ $archive_system = ut ]]
4503	then
4504	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4505	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4506	# GELEGT WERDEN
4507	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4508	chmod g+rx $tmp_data_catalog
4509	if [[ $files_for_pes = false ]]
4510	then
4511	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4512	else
4513	mkdir $tmp_data_catalog/${frelout[$i]}
4514	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4515	fi
4516
4517	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4518	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4519	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4520	if [[ $files_for_pes = false ]]
4521	then
4522	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4523	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4524	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4525	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4526	else
4527	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4528	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4529	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4530	fi
4531
4532	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4533	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4534	file_saved=true
4535
4536	else
4537	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4538	archive_save=false
4539	fi
4540	if [[ $file_saved = true ]]
4541	then
4542	if [[ $files_for_pes = false ]]
4543	then
4544	cat /dev/null > ${pathout[$i]}
4545	else
4546	mkdir -p ${pathout[$i]}
4547	fi
4548	fi
4549	fi
4550
4551	# APPEND AUF LOKALER MASCHINE
4552	if [[ "${actionout[$i]}" = "a" ]]
4553	then
4554	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4555	then
4556	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4557	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4558	else
4559	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4560	cat ${localout[$i]} >> ${pathout[$i]}
4561	fi
4562	fi
4563
4564	# KOPIEREN AUF LOKALER MASCHINE
4565	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4566	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4567	then
4568
4569	# KOPIEREN AUF EINPROZESSORMASCHINE
4570	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4571	then
4572	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4573	if [[ $link_local_output = true ]]
4574	then
4575	printf " using ln -f\n"
4576	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4577	fi
4578	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4579	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4580	then
4581	if [[ $link_local_output = true ]]
4582	then
4583	printf " ln failed, using cp...\n"
4584	fi
4585	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4586	fi
4587	else
4588	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4589	if [[ $link_local_output = true ]]
4590	then
4591	printf " using ln -f\n"
4592	ln -f ${localout[$i]} ${pathout[$i]}
4593	fi
4594	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4595	if [[ ! -f "${pathout[$i]}" ]]
4596	then
4597	if [[ $link_local_output = true ]]
4598	then
4599	printf " ln failed, using cp...\n"
4600	fi
4601	cp ${localout[$i]} ${pathout[$i]}
4602	fi
4603	fi
4604
4605	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4606	then
4607
4608	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4609	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4610	# WIRD DANN KOPIERT
4611	# PER MOVE UMBENANNT WERDEN
4612	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4613	if [[ $link_local_output = true ]]
4614	then
4615	printf " using ln -f\n"
4616	mkdir ${pathout[$i]}
4617	cd ${localout[$i]}
4618	for file in $(ls *)
4619	do
4620	ln -f $file ${pathout[$i]}
4621	done
4622	cd $TEMPDIR
4623	fi
4624	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4625	if [[ ! -f "${pathout[$i]}/_0000" ]]
4626	then
4627	if [[ $link_local_output = true ]]
4628	then
4629	printf " ln failed for .../_0000, using cp...\n"
4630	fi
4631	cp -r ${localout[$i]} ${pathout[$i]}
4632	fi
4633
4634	fi
4635	fi
4636	done
4637	if (( i != 0 ))
4638	then
4639	if [[ $transfer_problems = true ]]
4640	then
4641	printf "\n$striche\n *** OUTPUT-files saved"
4642	printf "\n +++ WARNING: some data transfers failed! \n"
4643	else
4644	printf "\n$striche\n *** all OUTPUT-files saved \n"
4645	fi
4646	fi
4647
4648
4649	# EVENTUELL FOLGEJOB STARTEN
4650	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4651	if [[ -f CONTINUE_RUN ]]
4652	then
4653
4654	if [[ $archive_save = true ]]
4655	then
4656
4657	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4658	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4659	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4660	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4661	# HANDEN
4662	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4663	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4664	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4665	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4666	then
4667	mc=`echo $mc \| sed 's/#/f/g'`
4668	fi
4669
4670
4671	# JOB STARTEN
4672	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4673	echo " $mc"
4674	printf "\n$striche\n"
4675	if [[ $localhost != $fromhost ]]
4676	then
4677
4678	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4679	then
4680	echo "*** ssh will be used to initiate restart-runs!"
4681	echo " return_addres=\"$return_addres\" "
4682	echo " return_username=\"$return_username\" "
4683	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4684	then
4685	if [[ $localhost = ibmh ]]
4686	then
4687	ssh $SSH_PORTOPT $usern@136.172.40.15 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4688	else
4689	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4690	fi
4691	else
4692	if [[ $localhost = ibmkisti ]]
4693	then
4694	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4695	else
4696	if [[ $localhost = lcflow ]]
4697	then
4698	/usr/bin/ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4699	else
4700	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4701	fi
4702	fi
4703	fi
4704	else
4705	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4706	locat=restart; exit
4707	fi
4708
4709	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4710	# DER AKTUELLE JOB ENDET
4711	if [[ $queue = special1q ]]
4712	then
4713	sleep 120
4714	else
4715	sleep 30
4716	fi
4717
4718	else
4719
4720	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4721	# RUFEN WERDEN, AUSSER AUF lcfimm
4722	cd $LOCAL_PWD
4723	if [[ $localhost = lcfimm ]]
4724	then
4725	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4726	elif [[ $localhost = lckyuh ]]
4727	then
4728	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4729	printf "\n please restart job manually using command:\n"
4730	printf "\n \"$mc\" "
4731	else
4732	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4733	fi
4734	cd - > /dev/null
4735	fi
4736	if [[ $localhost = lckyuh ]]
4737	then
4738	printf "\n$striche\n *** restart-run to be initiated manually\n"
4739	else
4740	printf "\n$striche\n *** restart-run initiated \n"
4741	fi
4742
4743
4744	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4745	# GEHOLT WORDEN SIND, LOESCHEN
4746	(( i = 0 ))
4747	while (( i < iin ))
4748	do
4749	(( i = i + 1 ))
4750	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4751	then
4752	rm -r $tmp_data_catalog/${frelin[$i]}
4753	fi
4754	done
4755
4756	else
4757
4758	printf "\n +++ no restart-run possible, since errors occured"
4759	printf "\n during the archive process"
4760	fi
4761
4762	fi
4763
4764
4765
4766	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4767	if [[ "$email_notification" != "none" ]]
4768	then
4769
4770	if [[ $localhost != $fromhost ]]
4771	then
4772	if [[ -f CONTINUE_RUN ]]
4773	then
4774	echo "PALM restart run necessary" > email_text
4775	echo "description header of actual run:" >> email_text
4776	cat CONTINUE_RUN >> email_text
4777	echo "mrun-command to restart:" >> email_text
4778	echo "$mc" >> email_text
4779	else
4780	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4781	fi
4782	mail $email_notification < email_text
4783	printf "\n *** email notification sent to \"$email_notification\" "
4784	fi
4785	fi
4786
4787
4788
4789	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4790	cd $HOME
4791	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4792
4793	else
4794
4795
4796	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4797	# CHENDE AKTIONEN DURCHGEFUEHRT
4798
4799	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4800	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4801	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4802	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4803	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4804	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4805	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4806	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4807	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4808	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4809	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4810	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4811	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4812	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4813	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4814	if [[ $use_openmp = true ]]
4815	then
4816	mrun_com=${mrun_com}" -O $threads_per_task"
4817	fi
4818	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4819	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4820	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4821	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4822	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4823	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4824	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4825	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4826	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4827	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4828	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4829	if [[ $do_remote = true ]]
4830	then
4831	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4832	fi
4833
4834
4835	# create executable for batch job
4836	if [[ $create_executable_for_batch = true && $restart_run != true ]]
4837	then
4838
4839	printf "\n *** creating the executable for batch job\n"
4840
4841	# method only works for batch jobs on local hosts
4842	if [[ $host != $localhost ]]
4843	then
4844	printf "\n +++ creation of executables is only allowed for batch jobs on local hosts."
4845	printf "\n Please set create_executable_for_batch = false in the config-file.\n"
4846	locat=create_executable; exit
4847	fi
4848
4849	mkdir $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4850	cd $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4851
4852	cp $make_depository .
4853	tar -xf $make_depository > /dev/null 2>&1
4854	cp ../* . > /dev/null 2>&1
4855
4856	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
4857
4858	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
4859	then
4860	printf "\n +++ error occured while compiling or linking"
4861	locat=compile
4862	exit
4863	fi
4864
4865	mv a.out ..
4866	cd - > /dev/null 2>&1
4867	rm -rf $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4868
4869	printf " *** executable created in \"$working_directory/SOURCES_FOR_RUN_${fname}\"\n "
4870
4871	fi
4872
4873
4874	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4875	jobfile=jobfile.$RANDOM
4876
4877
4878	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4879	echo "mkdir $TEMPDIR" >> $jobfile
4880	echo "cd $TEMPDIR" >> $jobfile
4881
4882
4883	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4884	if [[ $do_trace = true ]]
4885	then
4886	echo "set -x" >> $jobfile
4887	else
4888	echo "set +vx" >> $jobfile
4889	fi
4890
4891
4892	# initialize the environment and load modules
4893	if [[ "$init_cmds" != "" ]]
4894	then
4895	echo "$init_cmds" >> $jobfile
4896	fi
4897	if [[ "$module_calls" != "" ]]
4898	then
4899	echo "$module_calls" >> $jobfile
4900	fi
4901
4902
4903	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4904	# DATEI FUER DEN JOB
4905	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti \|\| $host = lccrayb \|\| $host = lccrayf ]]
4906	then
4907
4908	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4909	# KOPIEREN
4910	if [[ $restart_run != true ]]
4911	then
4912	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4913	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4914	fi
4915
4916	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4917	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4918	echo "set -x" >> $jobfile
4919	if [[ $host = $localhost ]]
4920	then
4921
4922	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
4923	# FILES ON CRAY XC30 SYSTEMS (CSC HELSINKI), rsync IS USED INSTEAD
4924	echo "rsync -ae -t $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4925
4926	else
4927	if [[ $host != ibmkisti ]]
4928	then
4929	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4930	else
4931	# on KISTI's IBM firewall is only opened on interactive node
4932	echo "localdir=\`pwd\`" >> $jobfile
4933	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4934	fi
4935	fi
4936	echo "export SOURCES_COMPLETE=true" >> $jobfile
4937
4938	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4939	# ARBEITSVERZEICHNIS VERSCHIEBEN
4940	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4941	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4942	echo "chmod u+rwx $mrun_script_name" >> $jobfile
4943	echo "execute_mrun=true" >> $jobfile
4944	echo " " >> $jobfile
4945
4946	else
4947
4948	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4949	# SOWIE GEGEBENENFALLS DES MAKEFILES
4950	if [[ $do_compile = true ]]
4951	then
4952
4953	source_catalog=SOURCES_FOR_RUN_$fname
4954
4955	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4956	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4957	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4958	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4959	echo "export SOURCES_COMPLETE=true" >> $jobfile
4960	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4961
4962	for filename in $source_list
4963	do
4964	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4965	echo "cat > $filename << \"%END%\"" >> $jobfile
4966	cat $source_catalog/$filename >> $jobfile
4967	echo " " >> $jobfile
4968	echo "%END%" >> $jobfile
4969	echo " " >> $jobfile
4970	done
4971
4972	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4973	echo "cat > Makefile << \"%END%\"" >> $jobfile
4974	cat $source_catalog/Makefile >> $jobfile
4975	echo " " >> $jobfile
4976	echo "%END%" >> $jobfile
4977	echo " " >> $jobfile
4978
4979	echo "cd - > /dev/null" >> $jobfile
4980
4981	fi
4982
4983
4984	# ABSPEICHERN DER KONFIGURATIONSDATEI
4985	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4986	# Lines with #$ coming from the svn keyword substitution are
4987	# removed from the config file in order to avoid problems
4988	# with the SGE batch system
4989	echo "cat > $config_file << \"%END%\"" >> $jobfile
4990	if [[ $host = lckyuh ]]
4991	then
4992	# no cross compiler on compute node
4993	sed 's/frtpx/frt/g' $config_file >> $jobfile
4994	else
4995	sed 's/#$.*//g' $config_file >> $jobfile
4996	fi
4997	echo "%END%" >> $jobfile
4998	echo " " >> $jobfile
4999
5000
5001	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
5002	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5003	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
5004	if [[ $host = lckyuh ]]
5005	then
5006	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
5007	else
5008	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
5009	fi
5010	echo "%END%" >> $jobfile
5011	echo "chmod u+x $mrun_script_name" >> $jobfile
5012	echo "execute_mrun=true" >> $jobfile
5013	echo " " >> $jobfile
5014
5015	fi
5016
5017
5018	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
5019	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
5020	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
5021	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
5022	if [[ $do_remote = true ]]
5023	then
5024	(( i = 0 ))
5025	while (( i < iin ))
5026	do
5027	(( i = i + 1 ))
5028	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
5029	if [[ "${transin[$i]}" = job ]]
5030	then
5031	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
5032	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
5033	echo " " >> $jobfile
5034	echo "%END%" >> $jobfile
5035	else
5036	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
5037	fi
5038
5039	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
5040	echo "if [[ \$? = 1 ]]" >> $jobfile
5041	echo "then" >> $jobfile
5042	echo " echo \" \" " >> $jobfile
5043	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
5044	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
5045	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
5046	echo " execute_mrun=false" >> $jobfile
5047	echo "fi" >> $jobfile
5048	done
5049	fi
5050
5051	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
5052	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
5053	echo "LOCAL_PWD=$working_directory" >> $jobfile
5054	echo "export LOCAL_PWD" >> $jobfile
5055
5056	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
5057	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
5058	echo "export LOCAL_MRUN_PATH" >> $jobfile
5059
5060	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
5061	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
5062	then
5063	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
5064	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
5065	then
5066	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
5067	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
5068	fi
5069
5070	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
5071	echo "set -x" >> $jobfile
5072	echo "queue=$queue" >> $jobfile
5073	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
5074	echo 'ls -al; echo `pwd`' >> $jobfile
5075	echo "cd \$HOME" >> $jobfile
5076	echo "rm -rf $TEMPDIR" >> $jobfile
5077
5078
5079
5080
5081	# JOB PER SUBJOB STARTEN
5082	if [[ $silent = false ]]
5083	then
5084	printf "\n "
5085	else
5086	printf "\n\n"
5087	fi
5088
5089	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
5090	rm -rf $jobfile
5091
5092
5093	fi # ENDE REMOTE-TEIL
5094
5095
5096
5097	# ENDE DER PROZEDUR

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