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source: palm/trunk/SCRIPTS/mrun @ 1200

Last change on this file since 1200 was 1200, checked in by raasch, 12 years ago
last commit documented
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Rev	Line
[1103]	1	#!/bin/ksh
[1046]	2
[1059]	3	# mrun - script for running PALM jobs
	4
[1046]	5	#--------------------------------------------------------------------------------#
	6	# This file is part of PALM.
	7	#
	8	# PALM is free software: you can redistribute it and/or modify it under the terms
	9	# of the GNU General Public License as published by the Free Software Foundation,
	10	# either version 3 of the License, or (at your option) any later version.
	11	#
	12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	15	#
	16	# You should have received a copy of the GNU General Public License along with
	17	# PALM. If not, see <http://www.gnu.org/licenses/>.
	18	#
	19	# Copyright 1997-2012 Leibniz University Hannover
	20	#--------------------------------------------------------------------------------#
	21	#
	22	# Current revisions:
[1090]	23	# ------------------
[1200]	24	#
	25	#
	26	# Former revisions:
	27	# -----------------
	28	# $Id: mrun 1200 2013-07-05 15:29:59Z raasch $
	29	#
	30	# 1199 2013-07-05 14:52:22Z raasch
[1199]	31	# adjustments for CSC Helsinki (lccrayf),
	32	# executables for batch jobs can be created in advance, in order to avoid calling
	33	# the compiler within the batch job (only works if batch jobs are submitted on
	34	# local host)
[1104]	35	#
[1191]	36	# 1190 2013-06-25 09:39:21Z heinze
	37	# enable use of automatic restarts for ibmh
[1185]	38	# use of cluster/express queue enabled (ibmh)
[1104]	39	#
[1125]	40	# 1124 2013-04-09 15:46:52Z raasch
	41	# variable "memory" is exported via typeset option -x, because otherwise an unknown
	42	# side effect may lead to data loss while getopts is reading the script-option arguments
	43	#
[1123]	44	# 1122 2013-04-09 08:37:16Z heinze
	45	# Bugfix: change type of variable last_char
	46	#
[1121]	47	# 1119 2013-04-05 15:11:19Z raasch
	48	# Bugfix for setting -T option for subjob
	49	#
[1109]	50	# 1108 2013-03-05 07:03:32Z raasch
	51	# bugfix for coupled runs on lckyut/lckyuh
	52	#
[1107]	53	# 1106 2013-03-04 05:31:38Z raasch
	54	# --stdin argument for mpiexec on lckyuh
	55	# -y and -Y settings output to header
	56	#
[1104]	57	# 1103 2013-02-20 02:15:53Z raasch
[1103]	58	# default script runs again under ksh, because of unsolved problems with read
	59	# from stdin: when bash script is called from a ksh, message "read error: 0:
	60	# Resource temporarily unavailable" appears and script does not stop,
	61	# further bash compatibility adjustments,
	62	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
	63	# on lckyuh, but mrun does not terminate and issues a warning instead
[1046]	64	#
[1102]	65	# 1101 2013-02-17 10:20:21Z raasch
	66	# script now running under bash instead of ksh, which required small adjustments
	67	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
	68	# read from stdin),
	69	# cross compilername on lckyuh compute nodes replaced by real compiler name
	70	#
[1100]	71	# 1099 2013-02-10 01:47:43Z raasch
	72	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
	73	# and for Forwind cluster (lcflow)
	74	# small further adjustments for lckyut
	75	#
[1096]	76	# 1094 2013-02-03 01:52:12Z raasch
	77	# explicit ssh/scp port can be set in config file with environment variable
	78	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
	79	# decalpha parts (yonsei) removed
	80	#
[1091]	81	# 2013-02-02 07:06:13Z raasch
[1099]	82	# adjustments for Kyushu-University computing center (lckyut - tatara)
[1091]	83	#
[1084]	84	# 1083 2013-01-04 10:22:09Z maronga
	85	# bugfix in parameter file check (read %cpp_options was missing)
	86	#
[1070]	87	# 1069 2012-11-28 16:18:43Z maronga
	88	# bugfix: coupling mode was always set to mpi2, typos removed
	89	#
[1059]	90	# 1058 2012-11-21 07:00:35Z raasch
	91	# Intel inspector (inspxe) is given the number of PEs instead of the number of
	92	# nodes
	93	#
[1047]	94	# 1046 2012-11-09 14:38:45Z maronga
	95	# code put under GPL (PALM 3.9)
	96	#
[1090]	97	# 21/03/94 - Siggi - first version finished
	98	# 03/03/94 - Siggi - script development started
	99	#
[1059]	100	#--------------------------------------------------------------------------------#
[1090]	101	# mrun - script for running PALM jobs
	102	#--------------------------------------------------------------------------------#
[1]	103
[1047]	104
[1]	105
	106	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	107
	108	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	109	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	110	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	111
	112	AddFilenames=""
	113	additional_conditions=""
	114	add_source_path=""
	115	afname=""
	116	archive_save=true
	117	archive_system=none
[807]	118	check_namelist_files=true
[920]	119	combine_plot_fields=true
[1]	120	compiler_name=""
	121	cond1=""
	122	cond2=""
	123	config_file=.mrun.config
[206]	124	coupled_dist=""
	125	coupled_mode="mpi1"
[1]	126	cpp_opts=""
[82]	127	cpp_options=""
[1]	128	cpumax=0
	129	cpurest=0
[1199]	130	create_executable_for_batch=false
[1]	131	delete_temporary_catalog=true
	132	do_batch=false
	133	do_compile=true
	134	do_remote=false
	135	do_stagein=true
	136	do_stageout=true
	137	do_trace=false
[352]	138	email_notification="none"
[1]	139	exclude=""
	140	executable=""
	141	execution_error=false
[67]	142	fimm=false
[1]	143	fname=test
	144	fromhost=""
[78]	145	global_revision=""
[122]	146	group_number=none
[1]	147	host=""
	148	host_file=""
	149	hp=""
	150	ignore_archive_error=false
	151	input_list=""
	152	interpreted_config_file=""
[164]	153	job_catalog="~/job_queue"
[1]	154	job_on_file=""
	155	keep_data_from_previous_run=false
[183]	156	link_local_input=false
[149]	157	link_local_output=false
[1]	158	localhost_realname=$(hostname)
	159	local_compile=false
[260]	160	local_dvrserver_running=.FALSE.
[1]	161	locat=normal
	162	mainprog=""
	163	makefile=""
[759]	164	max_par_io_str=""
[1]	165	mc=$0
	166	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	167	do
	168	mc=`echo $mc \| cut -f2- -d"/"`
	169	done
[493]	170	module_calls=""
[1]	171	mrun_script_name=$mc
[82]	172	netcdf_inc=""
	173	netcdf_lib=""
[1]	174	netcdf_support=false
	175	node_usage=default
	176	numprocs=""
[206]	177	numprocs_atmos=0
	178	numprocs_ocean=0
[1]	179	OOPT=""
	180	openmp=false
	181	output_list=""
	182	package_list=""
	183	punkte="..........................................................."
	184	queue=none
	185	read_from_config=""
[5]	186	restart_run=false
[622]	187	if [[ `hostname` = rte10 ]]
[1]	188	then
[1103]	189	return_addres=133.5.185.60
	190	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
[693]	191	elif [[ `hostname` = climate0 ]]
	192	then
[1103]	193	return_addres=165.132.26.68
	194	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
[1021]	195	elif [[ `hostname` = urban00 ]]
	196	then
[1103]	197	return_addres=147.46.30.151
	198	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
[622]	199	else
	200	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	201	fi
	202	return_password=""
	203	return_username=$LOGNAME
	204	remotecall=false
	205	remote_username=""
[102]	206	run_coupled_model=false
[1]	207	run_mode=""
	208	scirocco=false
[397]	209	store_on_archive_system=false
[1]	210	striche=" ----------------------------------------------------------------------------"
	211	silent=false
	212	source_list=""
	213	source_path=SOURCE
	214	tasks_per_node=""
	215	threads_per_task=1
	216	tmpcreate=false
	217	tmp_data_catalog=""
	218	transfer_problems=false
	219	usern=$LOGNAME
[377]	220	use_openmp=false
[1101]	221	version="MRUN 2.0 Rev$Rev: 1200 $"
[1]	222	working_directory=`pwd`
	223	TOPT=""
	224	XOPT=""
	225	zeit=$( date \| cut -c 12-19 )
	226
[1124]	227	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
	228	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
	229	# effect may cause data loss when getopts is reading the
	230	# script-option arguments
[1122]	231	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes sekunden tp1
[1]	232
	233
	234
	235
	236	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	237	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	238
	239	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	240	# EXPORTIERT WERDEN
	241	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[1124]	242	export group_number input_list numprocs output_list queue run_mode
[1]	243
	244
	245
	246	# FEHLERBEHANDLUNG
	247	# BEI EXIT:
[83]	248	trap 'rm -rf $working_directory/tmp_mrun
[69]	249	if [[ $locat != localhost ]]
[1]	250	then
[22]	251	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	252	# then
	253	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	254	#MRUN-calls on $localhost
	255	#
	256	#date and time user localhost remotehost termination mrun-command
	257	#--------------------------------------------------------------------------------------------------------------------
	258	#%STATEND%
	259	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	260	# fi
	261	#
	262	# # EINTRAG IN DIE STATISTIK-DATEI
[1101]	263	# string1=`date` #-L35
	264	# string2=$usern #-L12
	265	# string3=$localhost_realname #-L12
	266	# string4=$host #-L12
	267	# string5=$locat #-L12
[22]	268	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	269	# then
	270	# if [[ $do_batch = true ]]
	271	# then
	272	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	273	# else
	274	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	275	# fi
	276	# fi
[69]	277	echo " " > /dev/null
[1]	278	fi
	279
	280	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	281	then
	282
	283	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	284	(( i = 0 ))
	285	while (( i < iec ))
	286	do
	287	(( i = i + 1 ))
	288	printf "\n *** Execution of ERROR-command:\n"
	289	printf " >>> ${err_command[$i]}\n"
	290	eval ${err_command[$i]}
	291	done
[1101]	292	if [[ -n $interpreted_config_file ]]
	293	then
[1]	294	rm -rf $interpreted_config_file
	295	fi
[1101]	296	if [[ -n .mrun_environment ]]
	297	then
[71]	298	rm -rf .mrun_environment
	299	fi
[1]	300	if [[ $tmpcreate = true ]]
	301	then
	302	printf "\n *** Contents of \"$TEMPDIR\":\n"
	303	ls -al; cd
	304	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	305	fi
[260]	306	if [[ "$dvrserver_id" != "" ]]
	307	then
	308	echo "+++ killing dvrserver_id=$dvrserver_id"
	309	kill $dvrserver_id
	310	fi
[1]	311	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	312	then
	313	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	314	fi
	315	printf "\n\n+++ MRUN killed \n\n"
	316	elif [[ $locat != control_c ]]
	317	then
	318	printf "\n\n --> all actions finished\n\n"
	319	printf " Bye, bye $usern !!\n\n"
	320	fi' exit
	321
	322
	323	# BEI TERMINAL-BREAK:
[83]	324	trap 'rm -rf $working_directory/tmp_mrun
[807]	325	rm -rf $working_directory/tmp_check_namelist_files
[69]	326	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	327	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	328	then
	329	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	330	fi
[260]	331	if [[ "$dvrserver_id" != "" ]]
	332	then
	333	echo "+++ killing dvrserver_id=$dvrserver_id"
	334	kill $dvrserver_id
	335	fi
[1]	336	printf "\n+++ MRUN killed by \"^C\" \n\n"
	337	locat=control_c
	338	exit
	339	' 2
	340
	341
[22]	342	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	343	# BEEN SET
	344	if [[ "$PALM_BIN" = "" ]]
	345	then
	346	printf "\n +++ environment variable PALM_BIN has not been set"
	347	printf "\n please set it to the directory where the PALM scripts are located"
	348	locat=palm_bin; exit
	349	fi
[180]	350	export PATH=$PALM_BIN:$PATH
[22]	351
	352
[1]	353
	354	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	355	# FUER FOLGEJOBS BENOETIGT WIRD
[920]	356	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
[1]	357	do
	358	case $option in
	359	(a) afname=$OPTARG;;
[397]	360	(A) store_on_archive_system=true; mc="$mc -A";;
[1]	361	(b) do_batch=true; mc="$mc -b";;
	362	(B) delete_temporary_catalog=false; mc="$mc -B";;
	363	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	364	(C) restart_run=true; mc="$mc -C";;
[1]	365	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	366	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	367	(F) job_on_file="-D"; mc="$mc -F";;
[122]	368	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	369	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	370	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	371	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	372	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	373	(I) ignore_archive_error=true; mc="$mc -I";;
	374	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	375	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	376	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	377	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	378	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	379	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
[622]	380	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
[1]	381	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	382	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	383	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	384	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	385	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	386	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	387	(S) read_from_config=false; mc="$mc -S";;
	388	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
[759]	389	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
[1]	390	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	391	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	392	(v) silent=true; mc="$mc -v";;
[759]	393	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
[1]	394	(x) do_trace=true;set -x; mc="$mc -x";;
	395	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	396	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	397	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[807]	398	(z) check_namelist_files=false; mc="$mc -z";;
[920]	399	(Z) combine_plot_fields=false; mc="$mc -Z";;
[1]	400	(\?) printf "\n +++ unknown option $OPTARG \n"
	401	printf "\n --> type \"$0 ?\" for available options \n"
	402	locat=parameter;exit;;
	403	esac
	404	done
	405
	406
	407	# EVTL. POSITIONSPARAMETER EINLESEN
	408	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
[1101]	409	(( to_shift = $OPTIND - 1 ))
	410	shift $to_shift
[1]	411
	412	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	413	if [[ "$1" = "?" ]]
	414	then
	415	(printf "\n *** mrun can be called as follows:\n"
[920]	416	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
[1]	417	printf "\n Description of available options:\n"
	418	printf "\n Option Description Default-Value"
	419	printf "\n -a base name of input files equiv. -d"
[400]	420	printf "\n -A archiving when using file-attribute fl"
[1]	421	printf "\n -b batch-job on local machine ---"
	422	printf "\n -B do not delete temporary directory at end ---"
	423	printf "\n -c configuration file .mrun.config"
	424	printf "\n -d base name of files attached to program test"
	425	printf "\n -D preprocessor(cpp)-directives \"\" "
	426	printf "\n -F create remote job file only ---"
	427	printf "\n -h execution host $localhost_realname"
	428	printf "\n -i INPUT control list \"\" "
	429	printf "\n -I archiving errors of previous batch-jobs"
	430	printf "\n will be ignored"
	431	printf "\n -k keep data from previous run"
	432	printf "\n -K additional conditions for controling"
	433	printf "\n usage of conditional code and"
	434	printf "\n env-variables in configuration file \"\" "
	435	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	436	printf "\n -M Makefile name Makefile"
	437	printf "\n -n node usage (shared/not_shared) depending on -h"
	438	printf "\n -o OUTPUT control list \"\" "
	439	printf "\n -O use OpenMP ---"
	440	printf "\n -p software package list \"\" "
	441	printf "\n -q queue \"$queue\" "
	442	printf "\n -r run control list (combines -i -o) \"\" "
	443	printf "\n -s filenames of routines to be compiled \"\" "
	444	printf "\n must end with .f, .f90, .F, or .c !"
	445	printf "\n use \"..\" for more than one file and wildcards"
[837]	446	printf "\n -s LM compiles all locally modified files"
[1]	447	printf "\n -S config file interpreted by shellscript ---"
	448	printf "\n -t allowed cpu-time in seconds (batch) 0"
	449	printf "\n -T tasks per node depending on -h"
	450	printf "\n -u username on remote machine \"\" "
	451	printf "\n -v no prompt for confirmation ---"
[759]	452	printf "\n -w maximum parallel io streams as given by -X"
[1]	453	printf "\n -x tracing of mrun for debug purposes ---"
	454	printf "\n -X # of processors (on parallel machines) 1"
[291]	455	printf "\n -y add appendix \"_O\" to all local output"
	456	printf "\n files (ocean precursor runs followed by"
	457	printf "\n coupled atmosphere-ocean runs) ---"
[206]	458	printf "\n -Y run coupled model, \"#1 #2\" with"
	459	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[920]	460	printf "\n -z disable a priori parameter file check ---"
	461	printf "\n -Z skip combine_plot_fields at the end of "
	462	printf "\n the simulation ---"
[1]	463	printf "\n "
	464	printf "\n Possible values of positional parameter <modus>:"
	465	printf "\n \"?\" - this outline \n\n") \| more
	466	exit
	467	elif [[ "$1" != "" ]]
	468	then
	469	printf "\n +++ positional parameter $1 unknown \n"
	470	locat=parameter; exit
	471	fi
	472
	473
	474
	475	# KURZE STARTMELDUNG
	476	printf "\n*** $version "
	477	printf "\n will be executed. Please wait ..."
	478
	479
[82]	480
	481	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	482	if [[ ! -f $config_file ]]
	483	then
	484	printf "\n\n +++ configuration file: "
	485	printf "\n $config_file"
	486	printf "\n does not exist"
	487	locat=connect; exit
	488	fi
	489
	490
	491	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	492	line=""
	493	grep "%host_identifier" $config_file > tmp_mrun
	494	while read line
	495	do
[206]	496	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	497	then
	498	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	499	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	500	if [[ $localhost_realname = $HOSTNAME ]]
[82]	501	then
	502	localhost=$host_identifier
	503	break
	504	fi
	505	fi
	506	done < tmp_mrun
	507
	508	if [[ "$localhost" = "" ]]
	509	then
	510	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	511	printf "\n for local host \"$localhost_realname\"."
	512	printf "\n Please add line"
	513	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	514	printf "\n to the configuration file."
	515	locat=localhost; exit
	516	fi
	517
	518
	519	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	520	case $localhost_realname in
[397]	521	(r1\|r2\|h01\|b01) archive_system=tivoli;;
[82]	522	(cs*) archive_system=ut;;
	523	(fimm.bccs.uib.no) fimm=true;;
	524	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	525	(scirocco) scirocco=true;;
	526	esac
	527
	528
	529
[1]	530	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	531	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	532	[[ "$afname" = "" ]] && afname=$fname
	533
	534
	535	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	536	if [[ "$run_mode" != "" ]]
	537	then
	538	input_list="$input_list $run_mode"
	539	output_list="$output_list $run_mode"
	540	fi
	541
	542
	543	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	544	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	545	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	546	# STARTET)
	547	if [[ "$fromhost" = "" ]]
	548	then
	549	fromhost=$localhost
	550	fi
	551
	552
	553	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	554	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	555	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	556	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	557	if [[ -n $host && "$host" != $localhost ]]
	558	then
	559	do_batch=true
	560	do_remote=true
	561	case $host in
[1197]	562	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
[1]	563	(*) printf "\n"
[83]	564	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	565	printf "\n is not available"
[1]	566	locat=nqs; (( iec = 0 )); exit;;
	567	esac
	568	else
	569	host=$localhost
	570	fi
	571
	572
	573	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	574	if [[ -n $additional_conditions ]]
	575	then
[69]	576	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	577	cond1=`echo $additional_conditions \| cut -d" " -f1`
	578	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	579	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	580	if [[ -n $dummy ]]
	581	then
	582	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	583	locat=options; exit
	584	fi
[503]	585	block=_$cond1
	586	[[ -n $cond2 ]] && block=${block}_$cond2
[1]	587	fi
	588
	589
[206]	590	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	591	if [[ $run_coupled_model = true ]]
	592	then
	593
	594	if [[ -n $coupled_dist ]]
	595	then
	596
	597	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	598	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	599
	600	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	601	then
	602
	603	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	604	printf "\n PEs (total) : $numprocs"
	605	printf "\n PEs (atmosphere): $numprocs_atmos"
	606	printf "\n PEs (ocean) : $numprocs_ocean"
	607	locat=coupling; exit
	608
	609	fi
	610
	611	else
	612
	613	(( numprocs_ocean = $numprocs / 2 ))
	614	(( numprocs_atmos = $numprocs / 2 ))
	615
	616	fi
	617	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	618
	619	# GET coupled_mode FROM THE CONFIG FILE
	620	line=""
	621	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	622	while read line
	623	do
[1069]	624	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
[206]	625	then
	626	coupled_mode="mpi2"
	627	fi
	628	done < tmp_mrun
	629
	630	fi
	631
	632
[1]	633	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	634	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	635	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	636	then
	637	if [[ $ignore_archive_error = false ]]
	638	then
	639	printf "\n +++ data archiving of previous run failed"
	640	printf "\n see directory \~/job_queue on remote machine"
	641	locat=archive; exit
	642	else
	643	printf "\n +++ warning: data archiving in a previous run failed"
	644	printf "\n MRUN continues, trying to get backup copy"
	645	fi
	646	fi
	647
	648
[1099]	649	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	650	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	651	mrun_memory=$memory
	652	mrun_group_number=$group_number
	653	mrun_cpumax=$cpumax
	654	mrun_numprocs=$numprocs
[1]	655
[1099]	656
[1]	657	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	658	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	659	if [[ "$read_from_config" = false ]]
	660	then
	661
	662	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	663	while read zeile
	664	do
	665	[[ $silent = false ]] && printf "."
	666
	667
	668	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	669	# ERSETZEN
	670	eval zeile=\"$zeile\"
	671
	672
	673	# INTERPRETATION DER ZEILE
[21]	674	if [[ "$(echo $zeile)" = "" ]]
[1]	675	then
[21]	676	# LEERZEILE, KEINE AKTION
	677	continue
[1]	678
[21]	679	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	680	then
	681
[1]	682	# ZEILE IST KOMMENTARZEILE
	683	true
	684
	685	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	686	then
	687
	688	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	689	zeile=$(echo $zeile \| cut -c2-)
[69]	690	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	691	var=`echo $zeile \| cut -d" " -f1`
	692	value=`echo $zeile \| cut -d" " -s -f2`
	693	for_host=`echo $zeile \| cut -d" " -s -f3`
	694	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	695	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	696
	697	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	698	then
	699
	700	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	701	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	702	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	703
	704
	705	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	706	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	707	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	708	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	709	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	710	# KONFIGURATIONSDATEI
	711	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	712	then
	713	eval $var=\$value
	714
	715	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	716	if [[ $do_trace = true ]]
	717	then
	718	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	719	fi
	720	fi
	721
	722	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	723	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	724	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	725	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	726	if [[ $var = host ]]
	727	then
	728	if [[ -n $host && "$host" != $localhost ]]
	729	then
	730	do_batch=true
	731	do_remote=true
	732	case $host in
[1197]	733	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
[83]	734	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	735	printf "\n is not available"
[1]	736	locat=nqs; exit;;
	737	esac
	738	else
	739	host=$localhost
	740	fi
	741	fi
	742
	743	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	744	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	745	# DEN PROGRAMMEN BENOETIGT WERDEN
	746	export $var
	747	fi
	748
	749
	750
	751
	752	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	753	then
	754
	755	# ZEILE DEFINIERT ERROR-KOMMANDO
	756	(( iec = iec + 1 ))
	757	zeile=$(echo $zeile \| cut -c4-)
	758	err_command[$iec]="$zeile"
	759
	760	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	761	then
	762
	763	# ZEILE DEFINIERT INPUT-KOMMANDO
	764	(( iic = iic + 1 ))
	765	zeile=$(echo $zeile \| cut -c4-)
	766	in_command[$iic]="$zeile"
	767
	768	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	769	then
	770
	771	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	772	(( ioc = ioc + 1 ))
	773	zeile=$(echo $zeile \| cut -c4-)
	774	out_command[$ioc]="$zeile"
	775
	776	else
	777
	778	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	779	# s2a: in/out - Feld
	780	# s2b: loc - Feld (optional)
	781	# s2c: tr/ar - Feld (optional)
[69]	782	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	783	s1=`echo $zeile \| cut -d" " -f1`
	784	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	785	s2a=$(echo $s2 \| cut -d":" -f1)
	786	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	787	then
	788	s2b=""
	789	s2c=""
	790	else
[69]	791	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	792	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	793	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	794	fi
[69]	795	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	796	s3=`echo $zeile \| cut -d" " -f3`
	797	s4=`echo $zeile \| cut -d" " -s -f4`
	798	s5=`echo $zeile \| cut -d" " -s -f5`
	799	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	800
	801
	802	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	803	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	804	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	805	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	806	# HANDEN SEIN MUSS (D.H. s2b = loc)
	807	IFSALT="$IFS"; IFS="$IFS:"
	808	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	809	then
	810	found=false
	811	for actual in $input_list
	812	do
	813	for formal in $s3
	814	do
	815	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	816	done
	817	done
	818	if [[ $found = true ]]
	819	then
	820	(( iin = iin + 1 ))
	821	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	822	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	823	extin[$iin]=$s6
	824	fi
	825	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	826	then
	827	found=false
	828	for actual in $output_list
	829	do
	830	for formal in $s3
	831	do
	832	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	833	done
	834	done
	835	if [[ $found = true ]]
	836	then
	837	(( iout = iout + 1 ))
	838	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	839	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	840	fi
	841	elif [[ "$s2a" != in && "$s2a" != out ]]
	842	then
	843	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	844	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	845	locat=connect; exit
	846	fi
	847	IFS="$IFSALT"
	848	fi
	849	done < $config_file
	850
	851	else
	852
	853
	854	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	855	[[ $silent = false ]] && printf "..."
	856	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	857	export interpreted_config_file=.icf.$RANDOM
	858
	859
[69]	860
	861	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	862	# VERFUEGUNG STELLEN
	863	cat > .mrun_environment << %%END%%
	864	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	865	config_file = '$config_file', do_remote = '$do_remote',
	866	do_trace = '$do_trace', host = '$host',
	867	input_list = '$input_list', icf = '$interpreted_config_file',
	868	localhost = '$localhost', output_list = '$output_list' /
	869
	870	%%END%%
	871
[251]	872	if [[ $localhost_realname = "sx-fep" ]]
[66]	873	then
[251]	874	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	875	else
[503]	876
	877	if [[ "$host" != $localhost ]]
	878	then
	879
	880	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
	881	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
	882	if [[ $? != 0 ]]
	883	then
	884	printf "\n\n +++ no interpret_config found"
	885	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
	886	locat=interpret_config; exit
	887	fi
	888	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
	889	$interpret_config_executable
	890
	891	else
	892
	893	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
	894	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
	895	then
	896	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
	897	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
	898	locat=interpret_config; exit
	899	else
	900	interpret_config${block}.x
	901	fi
	902
	903	fi
[66]	904	fi
[71]	905	rm .mrun_environment
[1]	906
[71]	907
[1]	908	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	909	chmod u+x $interpreted_config_file
	910	export PATH=$PATH:.
	911	. $interpreted_config_file
[71]	912	rm $interpreted_config_file
[1]	913
[1099]	914	fi
[71]	915
[69]	916
[1099]	917	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
	918	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
	919	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
	920	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	921	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
	922	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
	923	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
[1]	924
	925
	926	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	927	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	928	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	929	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	930	if [[ "$SOURCES_COMPLETE" = "" ]]
	931	then
	932
	933	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	934	# VEREINBART WURDE
	935	source_path=""
	936	line=""
	937	grep "%source_path" $config_file > tmp_mrun
	938	while read line
	939	do
	940	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	941	then
	942	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	943	then
	944	global_source_path=`echo $line \| cut -d" " -f2`
	945	fi
	946	fi
	947	done < tmp_mrun
	948
	949	line=""
	950	found=false
	951	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	952	while read line
	953	do
	954	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	955	then
	956	if [[ $found = true ]]
	957	then
	958	printf "\n\n +++ more than one source path found in configuration file"
	959	printf "\n for local host \"$localhost\" "
	960	locat=source_path; exit
	961	fi
	962	source_path=`echo $line \| cut -d" " -f2`
	963	found=true
	964	fi
	965	done < tmp_mrun
	966	rm tmp_mrun
	967
	968	if [[ "$source_path" = "" ]]
	969	then
	970	if [[ "$global_source_path" != "" ]]
	971	then
	972	source_path=$global_source_path
	973	else
	974	printf "\n\n +++ no source path found in configuration file"
	975	printf "\n for local host \"$localhost\" "
	976	locat=source_path; exit
	977	fi
	978	fi
	979	eval source_path=$source_path
	980
	981	if [[ ! -d $source_path ]]
	982	then
	983	printf "\n\n +++ source path \"$source_path\" on local host"
	984	printf "\n \"$localhost\" does not exist"
	985	locat=source_path; exit
	986	fi
	987
	988	fi
	989
	990
[78]	991	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	992	# DURCH OPTION -G MITGETEILT)
[693]	993	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
[78]	994	then
	995	global_revision=`svnversion $source_path 2>/dev/null`
	996	global_revision="Rev: $global_revision"
	997	fi
[1]	998
[78]	999
[1]	1000	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1001	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1002	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1003	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1004	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1005	if [[ -n $host && "$host" != $localhost ]]
	1006	then
	1007	do_batch=true
	1008	do_remote=true
	1009	case $host in
[1197]	1010	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
[1]	1011	(*) printf "\n"
[83]	1012	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1013	printf "\n is not available"
[1]	1014	locat=nqs; (( iec = 0 )); exit;;
	1015	esac
	1016	else
	1017	host=$localhost
	1018	fi
	1019
	1020
	1021	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1022	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1023	then
	1024
	1025	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1026	if [[ ! -n $numprocs ]]
	1027	then
	1028	printf "\n"
	1029	printf "\n +++ option \"-K parallel\" requires additional specification"
	1030	printf "\n of the number of processors to be used by"
	1031	printf "\n mrun-option \"-X\" or by environment-variable"
	1032	printf "\n \"numprocs\" in the configuration file"
	1033	locat=numprocs; (( iec = 0 )); exit
	1034	fi
	1035
	1036	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1037	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1038	# GESAMTPROZESSORANZAHL IST
[1039]	1039	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
[1]	1040	then
[759]	1041	printf "\n"
	1042	printf "\n +++ option \"-T\" (tasks per node) is missing"
	1043	printf "\n set -T option or define tasks_per_node in the config file"
	1044	locat=tasks_per_node; (( iec = 0 )); exit
	1045	fi
[1039]	1046	if [[ $host != lcflow && $host != lcxt5m ]]
[759]	1047	then
[848]	1048	(( ival = $tasks_per_node ))
	1049	(( pes = numprocs ))
	1050	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1051	# then
	1052	# (( pes = pes - 1 ))
	1053	# fi
	1054	(( ii = pes / ival ))
	1055	if (( pes - ii * ival > 0 ))
	1056	then
	1057	printf "\n"
	1058	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1059	printf "\n divisor of the total number of processors (option \"-X\")"
	1060	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1061	locat=tasks_per_node; (( iec = 0 )); exit
	1062	fi
[1]	1063	fi
	1064
[759]	1065
[1]	1066	# IBMY HAT NUR EINEN KNOTEN
	1067	if [[ $host = ibmy ]]
	1068	then
	1069	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1070	then
	1071	printf "\n"
	1072	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1073	printf "\n total number of processors (option \"-X\")"
	1074	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1075	locat=tasks_per_node; (( iec = 0 )); exit
	1076	fi
	1077	fi
	1078
[377]	1079
	1080	# SETTINGS FOR SUBJOB-COMMAND
[1]	1081	OOPT="-O $threads_per_task"
	1082
	1083	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1084	if [[ "$tasks_per_node" != "" ]]
	1085	then
[1119]	1086	TOPT="-T $tasks_per_node"
[1]	1087	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1088	fi
	1089
	1090	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1091	# SETZEN
	1092	if [[ $node_usage = default ]]
	1093	then
	1094	if [[ $host = ibms ]]
	1095	then
	1096	node_usage=shared
[181]	1097	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1098	then
	1099	node_usage=singlejob
[1]	1100	else
	1101	node_usage=not_shared
	1102	fi
	1103	fi
[181]	1104
[635]	1105	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
[1]	1106	then
	1107	printf "\n"
	1108	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1109	printf "\n \"shared\" or \"not_shared\""
	1110	locat=tasks_per_node; (( iec = 0 )); exit
	1111	fi
	1112
	1113	fi
	1114
	1115	# PRUEFEN, OB HOSTFILE EXISTIERT
	1116	if [[ -n $hostfile ]]
	1117	then
	1118	if [[ ! -f $hostfile ]]
	1119	then
	1120	printf "\n"
	1121	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1122	locat=hostfile; exit
	1123	fi
	1124	fi
	1125
	1126	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1127	if [[ $host = ibmy && $do_remote = false ]]
	1128	then
	1129	if [[ ! -f $HOME/.rhosts ]]
	1130	then
	1131	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1132	printf "\n\n *** file:"
	1133	printf "\n $HOME/.rhosts"
	1134	printf "\n was created\n"
	1135	fi
	1136	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1137	then
	1138	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1139	printf "\n\n *** file:"
	1140	printf "\n $HOME/.rhosts"
	1141	printf "\n was extended by the name of the current host\n"
	1142	fi
	1143	fi
	1144
	1145
[759]	1146	# Set default value for the maximum number of parallel io streams
	1147	if [[ "$maximum_parallel_io_streams" = "" ]]
	1148	then
	1149	maximum_parallel_io_streams=$numprocs
	1150	fi
[1]	1151
[759]	1152
[1094]	1153	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
	1154	if [[ "$scp_port" != "" ]]
	1155	then
	1156	PORTOPT="-P $scp_port"
	1157	SSH_PORTOPT="-p $scp_port"
	1158	fi
	1159
	1160
[1]	1161	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1162	if [[ $queue = none ]]
	1163	then
	1164	case $host in
[1184]	1165	(ibmh) queue=cluster;;
[693]	1166	(ibmkisti) queue=class.32plus;;
[1]	1167	(ibmy) queue=parallel;;
[1040]	1168	(lckiaps) queue=normal;;
[440]	1169	(lckyoto) queue=ph;;
[1099]	1170	(lckyuh) queue=fx-single;;
	1171	(lckyut) queue=cx-single;;
[821]	1172	(lcsgib) queue=testq;;
	1173	(lcsgih) queue=testq;;
[635]	1174	(lctit) queue=S;;
[1]	1175	(nech) queue=none;;
[253]	1176	(necriam) queue=SP;;
[1]	1177	(unics) queue=unics;;
	1178	esac
	1179	fi
	1180
	1181
	1182	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1183	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1184	# ERMITTELN
	1185	(( i = 0 ))
	1186	while (( i < iin ))
	1187	do
	1188	(( i = i + 1 ))
	1189	(( maxcycle = 0 ))
	1190
	1191	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1192	if [[ "${actionin[$i]}" = di ]]
	1193	then
	1194	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1195	# REM-MASCHINE AUSWERTEN
	1196	eval filename=${pathin[$i]}/${endin[$i]}
	1197	else
	1198	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1199	# REM-MASCHINE AUSWERTEN
	1200	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1201	fi
[892]	1202	eval pathname=${pathin[$i]}
[1]	1203
[920]	1204	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
	1205	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
	1206	then
	1207	filename_input=$filename
	1208	fi
[892]	1209
[1]	1210	# PRUEFEN AUF VORHANDENSEIN
	1211	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
[746]	1212	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
[1]	1213	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1214	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1215	then
	1216	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1217	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1218	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1219	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1220	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1221	if [[ "${transin[$i]}" != "locopt" ]]
	1222	then
	1223	printf "\n\n +++ INPUT-file: "
	1224	if [[ "${extin[$i]}" = "" ]]
	1225	then
	1226	printf "\n $filename"
	1227	else
	1228	printf "\n $filename.${extin[$i]}"
	1229	fi
	1230	printf "\n does not exist\n"
	1231	locat=input; exit
	1232	else
	1233	transin[$i]="unavailable"
	1234	fi
	1235	else
	1236
	1237	# ZYKLUSNUMMER FESTSTELLEN
	1238	ls -1 -d $filename > filelist 2>/dev/null
	1239	ls -1 -d $filename.* >> filelist 2>/dev/null
	1240	while read zeile
	1241	do
[1101]	1242	cycle=$(echo $zeile \| cut -f2 -d".")
[1]	1243	if [[ "$cycle" = "$zeile" ]]
	1244	then
	1245	(( icycle = 0 ))
	1246	elif [[ "$cycle" = "${extin[$i]}" ]]
	1247	then
	1248	(( icycle = 0 ))
	1249	else
	1250	(( icycle = $cycle ))
	1251	fi
	1252	if (( icycle > maxcycle ))
	1253	then
	1254	(( maxcycle = icycle ))
	1255	file_to_be_used=$zeile
	1256	fi
	1257	done <filelist
	1258	rm filelist
	1259
	1260	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1261	if (( maxcycle > 0 ))
	1262	then
	1263	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1264	then
	1265	filename=${filename}.$maxcycle.${extin[$i]}
	1266	else
	1267	filename=${filename}.$maxcycle
	1268	fi
	1269	else
	1270	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1271	then
	1272	filename=${filename}.${extin[$i]}
	1273	fi
	1274	fi
	1275
	1276	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1277	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1278	absnamein[$i]=$filename
	1279	if (( maxcycle > 0 ))
	1280	then
	1281	if [[ "${actionin[$i]}" = di ]]
	1282	then
	1283	frelin[$i]=${endin[$i]}.$maxcycle
	1284	else
	1285	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1286	fi
	1287	else
	1288	if [[ "${actionin[$i]}" = di ]]
	1289	then
	1290	frelin[$i]=${endin[$i]}
	1291	else
	1292	frelin[$i]=${afname}${endin[$i]}
	1293	fi
	1294	fi
	1295
	1296	fi
	1297	done
[920]	1298
[1]	1299	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1300	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1301	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1302	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1303	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1304	(( i = 0 ))
	1305	while (( i < iout ))
	1306	do
	1307	(( i = i + 1 ))
	1308	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1309	then
[260]	1310	if [[ "${actionout[$i]}" = tr ]]
[1]	1311	then
	1312	actionout[$i]=""
[260]	1313	elif [[ "${actionout[$i]}" = trpe ]]
	1314	then
	1315	actionout[$i]=pe
[1]	1316	elif [[ "${actionout[$i]}" = tra ]]
	1317	then
	1318	actionout[$i]=a
	1319	fi
	1320	(( maxcycle = 0 ))
	1321	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1322	eval catalogname=${pathout[$i]}
	1323	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
[746]	1324	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
[1]	1325	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1326	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1327	then
	1328
	1329	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1330	if cat /dev/null > $filename
	1331	then
	1332	rm $filename
	1333	else
	1334
	1335	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1336	if [[ ! -d $catalogname ]]
	1337	then
	1338	if mkdir -p $catalogname
	1339	then
	1340	printf "\n\n *** directory:"
	1341	printf "\n $catalogname"
	1342	printf "\n was created\n"
	1343	else
	1344	printf "\n\n +++ OUTPUT-file:"
	1345	printf "\n $filename"
	1346	printf "\n cannot be created, because directory does not exist"
	1347	printf "\n and cannot be created either"
	1348	printf "\n"
	1349	locat=output ; exit
	1350	fi 2>/dev/null
	1351	else
	1352	printf "\n\n +++ OUTPUT-file:"
	1353	printf "\n $filename"
	1354	printf "\n cannot be created, although directory exists"
	1355	printf "\n"
	1356	locat=output ; exit
	1357	fi
	1358	fi 2>/dev/null
	1359	else
	1360
	1361	# ZYKLUSNUMMER FESTSTELLEN
	1362	ls -1 -d $filename > filelist 2>/dev/null
	1363	ls -1 -d $filename.* >> filelist 2>/dev/null
	1364	while read zeile
	1365	do
[1101]	1366	cycle=$(echo $zeile \| cut -f2 -d".")
[1]	1367	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1368	then
	1369	(( icycle = 1 ))
	1370	else
	1371	(( icycle = $cycle + 1 ))
	1372	fi
	1373	if (( icycle > maxcycle ))
	1374	then
	1375	(( maxcycle = icycle ))
	1376	fi
	1377	done <filelist
	1378	rm filelist
	1379	fi
	1380
	1381	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1382	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1383	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1384	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1385	if [[ "${actionout[$i]}" != a ]]
	1386	then
	1387	if (( maxcycle > 0 ))
	1388	then
	1389	filename=${filename}.$maxcycle
	1390	if cat /dev/null > $filename
	1391	then
	1392	rm $filename
	1393	else
	1394	printf "\n +++ OUTPUT-file:"
	1395	printf "\n $filename"
	1396	printf "\n cannot be created"
	1397	locat=output ; exit
	1398	fi
	1399	fi
	1400	else
	1401	(( maxcycle = maxcycle - 1 ))
	1402	if (( maxcycle > 0 ))
	1403	then
	1404	filename=${filename}.$maxcycle
	1405	fi
	1406	fi
	1407
	1408	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1409	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1410	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1411	pathout[$i]=$filename
	1412	if (( maxcycle > 0 ))
	1413	then
	1414	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1415	else
	1416	frelout[$i]=${fname}${endout[$i]}
	1417	fi
	1418
	1419	fi
	1420	done
	1421
	1422
[260]	1423	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1424	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1425	then
[260]	1426	if [[ "$dvr_inc" = "" ]]
[83]	1427	then
[260]	1428	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1429	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1430	locat=dvr; exit
[83]	1431	fi
[260]	1432	if [[ "$dvr_lib" = "" ]]
[83]	1433	then
[260]	1434	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1435	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1436	locat=dvr; exit
[83]	1437	fi
	1438	fi
	1439
	1440
[1]	1441	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1442	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1443	# UEBERSETZT ZU WERDEN)
	1444	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1445	then
	1446	printf "\n +++ neither main program nor executable defined"
	1447	locat=source; exit
	1448	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1449	then
	1450	printf "\n +++ main program as well as executable defined"
	1451	locat=source; exit
	1452	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1453	then
	1454	do_compile=false
	1455	fi
	1456
	1457
[191]	1458	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1459	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1460	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1461	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1462	then
	1463	rm -rf SOURCES_FOR_RUN_$fname
	1464	mkdir SOURCES_FOR_RUN_$fname
	1465	fi
	1466
	1467
[1]	1468	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1469	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1470	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1471	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1472	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1473	then
	1474
[5]	1475	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
[1]	1476
[838]	1477	if [[ "$source_list" = LOCALLY_MODIFIED ]]
[1]	1478	then
	1479
[5]	1480	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1481	source_list=""
	1482	cd $source_path
	1483
	1484
	1485	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1486	if [[ ! -d .svn ]]
	1487	then
	1488	printf "\n\n +++ source directory"
	1489	printf "\n \"$source_path\" "
	1490	printf "\n is not under control of \"subversion\"."
[306]	1491	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1492	fi
	1493
	1494
	1495	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1496	Filenames=""
[69]	1497	svn status > tmp_mrun
	1498	while read line
[5]	1499	do
	1500	firstc=`echo $line \| cut -c1`
	1501	if [[ $firstc = M \|\| $firstc = "?" ]]
	1502	then
	1503	Name=`echo "$line" \| cut -c8-`
	1504	extension=`echo $Name \| cut -d. -f2`
	1505	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1506	then
	1507	Filenames="$Filenames "$Name
	1508	fi
	1509	fi
[69]	1510	done < tmp_mrun
[5]	1511
	1512
	1513	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1514	for dateiname in $Filenames
	1515	do
	1516	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1517	source_list=$source_list"$dateiname "
	1518	done
	1519
	1520	cd - > /dev/null
	1521
	1522
[1]	1523	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1524	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1525	# VORHANDEN
[5]	1526	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1527	then
	1528
	1529	cd $source_path
	1530
	1531	for filename in $source_list
	1532	do
	1533
	1534	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
[1103]	1535	if [[ $(echo $filename \| grep -c "/") != 0 ]]
[1]	1536	then
	1537	printf "\n +++ source code file: $filename"
	1538	printf "\n must not contain (\"/\") "
	1539	locat=source; exit
	1540	fi
	1541
	1542	if [[ ! -f $filename ]]
	1543	then
	1544	printf "\n +++ source code file: $filename"
	1545	printf "\n does not exist"
	1546	locat=source; exit
	1547	else
	1548	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1549	fi
	1550
	1551	done
	1552
	1553	cd - > /dev/null
	1554
	1555	fi
	1556
	1557
	1558	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1559	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1560	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1561	if [[ $restart_run != true ]]
[1]	1562	then
	1563
	1564	if [[ ! -f "$source_path/$mainprog" ]]
	1565	then
	1566	printf "\n\n +++ main program: $mainprog"
	1567	printf "\n does not exist in source directory"
	1568	printf "\n \"$source_path\"\n"
	1569	locat=source; exit
	1570	else
	1571	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1572	then
	1573	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1574	source_list=${mainprog}" $source_list"
	1575	fi
	1576	fi
	1577	fi
	1578
	1579
[211]	1580	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1581	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1582	if [[ "$restart_run" != true ]]
	1583	then
	1584	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1585	if [[ ! -f $makefile ]]
	1586	then
	1587	printf "\n +++ file \"$makefile\" does not exist"
	1588	locat=make; exit
	1589	else
	1590	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1591	fi
	1592	fi
	1593
	1594
[1]	1595	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1596	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1597	then
	1598
	1599	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1600	if [[ ! -d $add_source_path ]]
	1601	then
	1602	printf "\n\n +++ WARNING: additional source code directory"
	1603	printf "\n \"$add_source_path\" "
	1604	printf "\n does not exist or is not a directory."
	1605	printf "\n No source code will be used from this directory!\n"
	1606	add_source_path=""
[931]	1607	if [[ $silent == false ]]
	1608	then
	1609	sleep 3
	1610	fi
[1]	1611	else
	1612
	1613	cd $add_source_path
[211]	1614	found=false
[1]	1615
	1616	Names=$(ls -1 *.f90 2>&1)
	1617	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1618	Names=$(ls -1 *.F90 2>&1)
	1619	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1620	Names=$(ls -1 *.F 2>&1)
	1621	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1622	Names=$(ls -1 *.f 2>&1)
	1623	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1624	Names=$(ls -1 *.c 2>&1)
	1625	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1626
	1627	cd - > /dev/null
	1628	cd SOURCES_FOR_RUN_$fname
	1629
[211]	1630	# COPY MAKEFILE IF EXISTING
	1631	if [[ -f $add_source_path/Makefile ]]
	1632	then
	1633	printf "\n\n *** user Makefile from directory"
	1634	printf "\n \"$add_source_path\" is used \n"
[931]	1635	if [[ $silent == false ]]
	1636	then
	1637	sleep 1
	1638	fi
[211]	1639	cp $add_source_path/Makefile .
	1640	fi
	1641
[1]	1642	for dateiname in $AddFilenames
	1643	do
	1644	if [[ -f $dateiname ]]
	1645	then
	1646	printf "\n +++ source code file \"$dateiname\" found in additional"
	1647	printf "\n source code directory \"$add_source_path\" "
[211]	1648	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1649	printf "\n from directory \"$source_path\"."
[1]	1650	locat=source; exit
	1651	fi
	1652
	1653	cp $add_source_path/$dateiname .
	1654	source_list="$source_list $dateiname"
	1655
[211]	1656	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1657	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1658	then
	1659	printf "\n\n +++ user file \"$dateiname\" "
	1660	printf "\n is not listed in Makefile \n"
	1661	locat=source; exit
	1662	else
	1663
[1]	1664	# Default User-Interface von der Liste entfernen, falls Datei
	1665	# ein User-Interface enthaelt
[211]	1666	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1667	# then
	1668	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1669	# then
	1670	# rm -rf user_interface.f90
	1671	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1672	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1673	# printf "\n since a user-interface is found in file"
	1674	# printf "\n \"$add_source_path/$dateiname\" \n"
	1675	# sleep 3
	1676	# else
	1677	if [[ $found = false ]]
[1]	1678	then
[211]	1679	found=true
	1680	printf "\n\n *** following user file(s) added to the"
	1681	printf " files to be translated:\n "
[1]	1682	fi
[211]	1683	printf "$dateiname "
[931]	1684	if [[ $silent == false ]]
	1685	then
	1686	sleep 0.5
	1687	fi
	1688
[1]	1689	fi
	1690	done
[211]	1691	[[ $found = true ]] && printf "\n"
[1]	1692	cd - > /dev/null
	1693	fi
	1694	fi
	1695
	1696
	1697	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1698	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1699	if [[ $restart_run != true && -n $package_list ]]
[1]	1700	then
	1701
	1702	cd $source_path
	1703
	1704	for package in $package_list
	1705	do
	1706
	1707	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1708
	1709	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1710	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1711	# LIEFERT
	1712	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1713
	1714
	1715	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1716	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1717	for source_list_name in $package_source_list
	1718	do
	1719	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1720	then
	1721
	1722	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1723	ending=`echo $source_list_name \| cut -f2 -d.`
	1724	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1725	then
	1726	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1727	source_list="$source_list $source_list_name"
	1728	fi
	1729	fi
	1730	done
	1731	done
	1732
	1733	cd - > /dev/null
	1734	fi
	1735
	1736
	1737	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1738	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1739	# if [[ "$restart_run" != true ]]
	1740	# then
	1741	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1742	# if [[ ! -f $makefile ]]
	1743	# then
	1744	# printf "\n +++ file \"$makefile\" does not exist"
	1745	# locat=make; exit
	1746	# else
	1747	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1748	# fi
	1749	# fi
[1]	1750
	1751	fi # do_compile=true
	1752
	1753
	1754	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1755	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
[1199]	1756	if [[ $do_compile = true \|\| $create_executable_for_batch = true ]]
[1]	1757	then
	1758
	1759	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1760	# ZUSAMMENSETZEN
[83]	1761	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1762	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1763	then
[82]	1764	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1765	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1766	then
[82]	1767	cpp_options="$cpp_options -D__nec"
	1768	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1769	then
	1770	cpp_options="$cpp_options -D__lc"
[1]	1771	else
[82]	1772	cpp_options="$cpp_options -D__$localhost"
[1]	1773	fi
[83]	1774
	1775	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1776	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1777	then
[82]	1778	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1779	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1780	else
[82]	1781	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1782	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1783	fi
[83]	1784
	1785	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1786	if [[ -n $package_list ]]
	1787	then
	1788	for package in $package_list
	1789	do
	1790	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1791	then
	1792	if [[ $package != "dvrp_graphics+1PE" ]]
	1793	then
[82]	1794	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1795	else
[82]	1796	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1797	export use_seperate_pe_for_dvrp_output=true
	1798	fi
	1799	else
	1800	if [[ $package != "dvrp_graphics+1PE" ]]
	1801	then
[82]	1802	cpp_options="$cpp_options -D__$package"
[1]	1803	else
[82]	1804	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1805	export use_seperate_pe_for_dvrp_output=true
	1806	fi
	1807	fi
	1808	done
	1809	fi
[83]	1810
	1811	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1812	if [[ -n $cpp_opts ]]
	1813	then
	1814	for popts in $cpp_opts
	1815	do
[82]	1816	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1817	then
	1818	cpp_options="${cpp_options},-D__$popts=__$popts"
	1819	else
	1820	cpp_options="$cpp_options -D__$popts"
	1821	fi
[1]	1822	done
	1823	fi
	1824
	1825	else
	1826
	1827
	1828	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1829	if [[ $do_remote = false ]]
	1830	then
	1831	if [[ ! -f $executable ]]
	1832	then
	1833	printf "\n +++ executable file: $executable"
	1834	printf "\n does not exist"
	1835	locat=executable; exit
	1836	fi
	1837	fi
	1838	fi
	1839
	1840
	1841	# JOBMODUS FESTSTELLEN
[635]	1842	if [[ "$ENVIRONMENT" = BATCH ]]
[1]	1843	then
	1844	jobmo=BATCH
	1845	else
	1846	jobmo=INTERACTIVE
	1847	fi
	1848
	1849
[635]	1850	# no interactive runs on lctit
	1851	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
	1852	then
	1853	printf "\n +++ no interactive runs allowed on host \"$host\" "
	1854	printf "\n please submit batch job using mrun option \"-b\" \n"
	1855	locat=normal; exit
	1856	fi
	1857
	1858
[1]	1859	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1860	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1861	if [[ "$compiler_name" = "" ]]
	1862	then
[82]	1863
[220]	1864	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1865	locat=compiler_name; exit
	1866
[1]	1867	fi
	1868
	1869
[251]	1870	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	1871	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	1872
	1873
	1874
	1875	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	1876	kennung=$RANDOM
	1877	if [[ "$tmp_user_catalog" = "" ]]
	1878	then
[312]	1879	if [[ $localhost = ibmh ]]
[1]	1880	then
[312]	1881	tmp_user_catalog=$SCRATCH
[1]	1882	elif [[ $localhost = nech ]]
	1883	then
	1884	tmp_user_catalog=$WRKSHR
	1885	else
	1886	tmp_user_catalog=/tmp
	1887	fi
	1888	fi
	1889	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	1890
	1891
	1892	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	1893	# BESTIMMEN
	1894	if [[ "$tmp_data_catalog" = "" ]]
	1895	then
[622]	1896	if [[ $localhost = nech ]]
[1]	1897	then
	1898	tmp_data_catalog=$WRKSHR/mrun_restart_data
	1899	else
	1900	tmp_data_catalog=/tmp/mrun_restart_data
	1901	fi
	1902	fi
	1903
	1904
	1905	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	1906	# ERSETZEN
[1199]	1907	if [[ $do_remote = false && $do_compile = true \|\| $create_executable_for_batch = true ]]
[1]	1908	then
	1909	eval fopts=\"$fopts\"
	1910	eval lopts=\"$lopts\"
	1911	fi
	1912
	1913
	1914
	1915	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	1916	fopts="$fopts $netcdf_inc $dvr_inc"
	1917	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	1918	ROPTS="$ropts"
[1099]	1919	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
[1090]	1920	# then
[1]	1921	XOPT="-X $numprocs"
[1090]	1922	# fi
[1]	1923
	1924
	1925
	1926	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	1927	# GRAMM BENOETIGT
	1928	done=false
	1929	while [[ $done = false ]]
	1930	do
	1931	cputime=$cpumax
	1932	if (( $cputime == 0 ))
	1933	then
[246]	1934	if [[ $do_batch = true ]]
	1935	then
	1936	printf "\n +++ cpu-time is undefined"
	1937	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	1938	printf "\n >>> "
	1939	read cputime 1>/dev/null 2>&1
	1940	else
	1941	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	1942	fi
[1]	1943	else
	1944	done=true
	1945	fi
	1946	cpumax=$cputime
	1947	done
	1948
	1949	(( minuten = cputime / 60 ))
	1950	(( sekunden = cputime - minuten * 60 ))
	1951
	1952
	1953	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	1954	if [[ $do_batch = true ]]
	1955	then
	1956	done=false
	1957	while [[ $done = false ]]
	1958	do
	1959	if (( memory == 0 ))
	1960	then
	1961	printf "\n +++ memory demand is undefined"
	1962	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	1963	printf "\n >>> "
	1964	read memory 1>/dev/null 2>&1
	1965	else
	1966	done=true
	1967	fi
	1968	done
	1969	fi
	1970
	1971
	1972	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	1973	if [[ $do_remote = true && -z $remote_username ]]
	1974	then
	1975	while [[ -z $remote_username ]]
	1976	do
	1977	printf "\n +++ username on remote host \"$host\" is undefined"
	1978	printf "\n >>> Please type username:"
	1979	printf "\n >>> "
	1980	read remote_username
	1981	done
	1982	mc="$mc -u$remote_username"
	1983	fi
	1984
[892]	1985	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
	1986	if [[ "$login_init_cmd" != "" ]]
	1987	then
	1988	export init_cmds="${login_init_cmd};"
	1989	fi
[221]	1990
[892]	1991
[493]	1992	# set module load command and export for subjob
	1993	if [[ "$modules" != "" ]]
	1994	then
[678]	1995	if [[ $host = lctit ]]
	1996	then
	1997	export module_calls=". $modules"
	1998	else
	1999	export module_calls="module load ${modules};"
	2000	fi
[493]	2001	fi
	2002
[683]	2003	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
[562]	2004	if [[ $host = lcsgib \|\| $host = lcsgih ]]
[555]	2005	then
	2006	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
	2007	then
[562]	2008	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
[555]	2009	fi
[721]	2010	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
	2011	# then
	2012	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
	2013	# echo "*** module_calls = $module_calls"
	2014	# fi
[555]	2015	fi
[493]	2016
[555]	2017
[221]	2018	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2019	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2020	then
[493]	2021	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
	2022	then
	2023	mpilib=mpt
	2024	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
	2025	then
	2026	mpilib=mvapich
[738]	2027	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
	2028	then
	2029	mpilib=impi
[493]	2030	fi
[221]	2031	fi
	2032
	2033
	2034
[1]	2035	###########################################################################
	2036	# HEADER-AUSGABE
	2037	###########################################################################
	2038
	2039
	2040	calltime=$(date)
	2041	printf "\n"
	2042	# [[ $silent = false ]] && clear
[1101]	2043	printf "#------------------------------------------------------------------------# \n"
	2044	printf "\| %-35s%35s \| \n" "$version" "$calltime"
	2045	printf "\| \| \n"
[1]	2046	spalte1="called on:"; spalte2=$localhost_realname
[1101]	2047	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2048	if [[ $local_compile = false ]]
	2049	then
	2050	if [[ $do_remote = true ]]
	2051	then
	2052	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2053	else
	2054	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2055	fi
	2056	else
	2057	spalte1="compiling test only!"; spalte2=""
	2058	fi
[1101]	2059	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2060	if [[ -n $numprocs ]]
	2061	then
[1106]	2062	if [[ $run_coupled_model = false ]]
	2063	then
	2064	spalte1="number of PEs:"; spalte2=$numprocs
	2065	else
	2066	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
	2067	fi
[1101]	2068	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2069	fi
	2070	if [[ -n $tasks_per_node ]]
	2071	then
	2072	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
[1101]	2073	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2074	fi
[759]	2075	if [[ $maximum_parallel_io_streams != $numprocs ]]
	2076	then
	2077	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
[1101]	2078	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[759]	2079	fi
[622]	2080	if [[ $use_openmp = true ]]
[1]	2081	then
	2082	spalte1="threads per task:"; spalte2="$threads_per_task"
[1101]	2083	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2084	fi
[1101]	2085	printf "\| \| \n"
[1]	2086	if [[ $do_compile = true ]]
	2087	then
[475]	2088	if [[ "$mopts" != "" ]]
	2089	then
[1101]	2090	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
	2091	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2092	zeile=$(echo "$mopts" \| cut -c46-)
[475]	2093	while [[ "$zeile" != "" ]]
	2094	do
	2095	spalte1=""
[1101]	2096	spalte2=$(echo "$zeile" \| cut -c-45)
	2097	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2098	zeile=$(echo "$zeile" \| cut -c46-)
[475]	2099	done
	2100	fi
	2101
[1101]	2102	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
	2103	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2104	zeile=$(echo "$cpp_options" \| cut -c46-)
[1]	2105	while [[ "$zeile" != "" ]]
	2106	do
	2107	spalte1=""
[1101]	2108	spalte2=$(echo "$zeile" \| cut -c-45)
	2109	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2110	zeile=$(echo "$zeile" \| cut -c46-)
[1]	2111	done
	2112
[1101]	2113	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
	2114	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2115	zeile=$(echo "$fopts" \| cut -c46-)
[1]	2116	while [[ "$zeile" != "" ]]
	2117	do
	2118	spalte1=""
[1101]	2119	spalte2=$(echo "$zeile" \| cut -c-45)
	2120	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2121	zeile=$(echo "$zeile" \| cut -c46-)
[1]	2122	done
	2123
[1101]	2124	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
	2125	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2126	zeile=$(echo "$lopts" \| cut -c46-)
[1]	2127	while [[ "$zeile" != "" ]]
	2128	do
	2129	spalte1=""
[1101]	2130	spalte2=$(echo "$zeile" \| cut -c-45)
	2131	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2132	zeile=$(echo "$zeile" \| cut -c46-)
[1]	2133	done
	2134
[1101]	2135	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
	2136	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2137	zeile=$(echo "$modules" \| cut -c46-)
[493]	2138	while [[ "$zeile" != "" ]]
	2139	do
	2140	spalte1=""
[1101]	2141	spalte2=$(echo "$zeile" \| cut -c-45)
	2142	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2143	zeile=$(echo "$zeile" \| cut -c46-)
[493]	2144	done
	2145
[1101]	2146	spalte1="main program:"; spalte2=$mainprog
	2147	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2148	else
	2149	spalte1=executable:; spalte2=$executable
[1101]	2150	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2151	fi
[1101]	2152	printf "\| \| \n"
	2153	spalte1="base name of files:"; spalte2=$fname
	2154	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2155	if [[ $fname != $afname ]]
	2156	then
[1101]	2157	spalte1="base name of input files:"; spalte2=$afname
	2158	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2159	fi
[1101]	2160	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
	2161	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2162	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
	2163	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2164
[1106]	2165	if [[ "$ocean_file_appendix" = true ]]
	2166	then
	2167	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
	2168	fi
	2169
[1]	2170	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2171	then
	2172	spalte1="memory demand / PE":; spalte2="$memory MB"
[1101]	2173	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2174	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
[1101]	2175	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2176	fi
	2177
	2178	if [[ $do_compile = true ]]
	2179	then
[1101]	2180	printf "\| \| \n"
	2181	printf "\| Files to be compiled: \| \n"
[1]	2182	zeile=$source_list
	2183	while [[ "$zeile" != "" ]]
	2184	do
[1101]	2185	linestart=$(echo $zeile \| cut -c-70)
	2186	printf "\| %-70s \| \n" "$linestart"
	2187	zeile=$(echo "$zeile" \| cut -c71-)
[1]	2188	done
	2189	fi
[1101]	2190	printf "#------------------------------------------------------------------------#"
[1]	2191
	2192
	2193
	2194	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2195	if [[ $do_trace = true ]]
	2196	then
	2197	(( i = 0 ))
	2198	while (( i < iin ))
	2199	do
	2200	(( i = i + 1 ))
	2201	if (( i == 1 ))
	2202	then
	2203	printf "\n\n >>> INPUT-file assignments:\n"
	2204	fi
	2205	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2206	done
	2207	(( i = 0 ))
	2208	while (( i < iout ))
	2209	do
	2210	(( i = i + 1 ))
	2211	if (( i == 1 ))
	2212	then
	2213	printf "\n\n >>> OUTPUT-file assignments:\n"
	2214	fi
	2215	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2216	done
	2217	(( i = 0 ))
	2218	while (( i < iic ))
	2219	do
	2220	(( i = i + 1 ))
	2221	if (( i == 1 ))
	2222	then
	2223	printf "\n\n >>> INPUT-commands:\n"
	2224	fi
	2225	printf "\n ${in_command[$i]}"
	2226	done
	2227	(( i = 0 ))
	2228	while (( i < ioc ))
	2229	do
	2230	(( i = i + 1 ))
	2231	if (( i == 1 ))
	2232	then
	2233	printf "\n\n >>> OUTPUT-commands:\n"
	2234	fi
	2235	printf "\n ${out_command[$i]}"
	2236	done
	2237	fi
	2238
	2239
	2240	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2241	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2242	then
	2243	antwort=dummy
	2244	printf "\n\n"
[1101]	2245	printf " >>> everything o.k. (y/n) ? "
	2246	while read antwort
[1]	2247	do
[1101]	2248	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2249	then
	2250	printf " >>> everything o.k. (y/n) ? "
	2251	else
	2252	break
	2253	fi
[1]	2254	done
	2255	if [[ $antwort = n \|\| $antwort = N ]]
	2256	then
	2257	locat=user_abort; (( iec = 0 )); exit
	2258	fi
	2259	if [[ $do_batch = true ]]
	2260	then
	2261	printf " >>> batch-job will be created and submitted"
	2262	else
	2263	if [[ $local_compile = false ]]
	2264	then
	2265	printf " >>> MRUN will now continue to execute on this machine"
	2266	else
	2267	printf " >>> a test compilation will now be carried out on this machine"
	2268	fi
	2269	fi
	2270	fi
	2271
[841]	2272
[1101]	2273	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
	2274	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
[841]	2275	check_depository="${working_directory}/trunk/UTIL"
	2276	check_sources="${working_directory}/tmp_check_namelist_files"
[818]	2277	skip_check=false
[841]	2278
[1101]	2279	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
[920]	2280	if [[ ! -f $check_depository/check_namelist_files.tar ]]
[841]	2281	then
[1101]	2282	skip_check=true
	2283	reason="run on remote host or parameter file check has not been compiled."
[920]	2284	fi
	2285	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
	2286	then
[1101]	2287	skip_check=true
	2288	reason="parameter file check has not been compiled."
[892]	2289	fi
[841]	2290
[1101]	2291	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
[892]	2292	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
	2293	then
[1101]	2294	skip_check=true
	2295	reason="serial run."
[841]	2296	fi
	2297
[1101]	2298	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
	2299	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
	2300	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
	2301	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
[892]	2302	if [[ $check_namelist_files == false ]]
[807]	2303	then
[1101]	2304	skip_check=true
	2305	reason="-z option set."
[815]	2306	fi
[892]	2307
	2308	if [[ $fromhost != $localhost ]]
[815]	2309	then
[1101]	2310	skip_check=true
	2311	reason="submitting host is local host."
[892]	2312	fi
[1]	2313
[892]	2314	if [[ $run_coupled_model == true ]]
	2315	then
	2316	skip_check=true
	2317	reason="coupled run."
	2318	fi
[1]	2319
[892]	2320	if [[ $restart_run == true ]]
	2321	then
	2322	skip_check=true
	2323	reason="restart run."
	2324	fi
[807]	2325
[1101]	2326	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
[1122]	2327	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
	2328	last_char=`echo $filename_input \| cut -c $last_char_int`
[892]	2329	if [[ "$last_char" == "f" ]]
	2330	then
	2331	skip_check=true
[1069]	2332	reason="restart run."
[892]	2333	fi
[807]	2334
[892]	2335	if [[ $skip_check == false ]]
	2336	then
	2337	tmp_check=${working_directory}/tmp_check
[841]	2338
[1101]	2339	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
	2340	# NOT NECESSARILY REQUIRED
[818]	2341	line=""
	2342	found=false
[892]	2343	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
[818]	2344	while read line1
	2345	do
	2346	line="$line1"
	2347	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2348	then
	2349	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
	2350	found=true
	2351	fi
	2352	done < $tmp_check
[807]	2353
[818]	2354	if [[ $found = false ]]
	2355	then
	2356	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
	2357	fi
	2358
[807]	2359	rm -rf ${working_directory}/tmp_check
	2360
[1101]	2361	# CHECK IF THE A P3DF FILE MUST BE CHECKED
[807]	2362	for item in $input_list
	2363	do
[892]	2364	if [[ "$item" == "restart" ]]
[807]	2365	then
	2366	check_restart=1
	2367	else
	2368	check_restart=0
	2369	fi
	2370	done
	2371
[1101]	2372	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
	2373	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
[807]	2374	then
[920]	2375	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
[807]	2376	locat=check_namelist; exit
	2377	fi
	2378
[1101]	2379	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
[807]	2380	if [[ $check_restart == 1 ]]
	2381	then
[892]	2382
[920]	2383	filenamef="${filename_input}f"
[892]	2384	if [[ ! -f $filenamef ]]
[807]	2385	then
[892]	2386	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
[807]	2387	check_restart=0
	2388	answer=dummy
	2389	printf "\n\n"
	2390
[818]	2391	if [[ $silent == false ]]
[807]	2392	then
[818]	2393	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2394	do
	2395	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2396	read answer
	2397	done
	2398	if [[ $answer = a \|\| $answer = A ]]
	2399	then
	2400	printf "\n +++ Aborting...."
	2401	locat=normal; exit
	2402	fi
[807]	2403	fi
	2404	else
	2405	check_restart=1
	2406	fi
	2407	fi
	2408
[1101]	2409	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
[807]	2410	mkdir $check_sources
	2411	cd $check_sources
	2412
[892]	2413
[1101]	2414	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
[892]	2415	if [[ -d $add_source_path ]]
[807]	2416	then
	2417	printf "\n\n *** copying files from $check_depository"
	2418	cp $check_depository/check_namelist_files.tar ./
	2419
	2420	printf "\n\n *** untar of makefile and source files in $check_sources"
	2421	tar -xf check_namelist_files.tar > /dev/null 2>&1
	2422
	2423	printf "\n\n *** adding user code."
[892]	2424	cp $add_source_path/* ./
[807]	2425	touch check_namelist_files.f90
	2426
[1101]	2427	# GET COMPILER OPTIONS AND PERFORM MAKE
[807]	2428	printf "\n\n *** compiling code if necessary...\n"
[1045]	2429
[1101]	2430	# workaround for batch jobs on local machine (lcxe6)
[1045]	2431	if [[ $do_batch == true && $do_remote == false ]]
	2432	then
	2433	eval $init_cmds
	2434	fi
	2435
[1101]	2436	# GET CHECK OPTIONS
[1083]	2437	line=""
	2438	found=false
	2439
	2440	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
	2441
	2442	while read line1
	2443	do
	2444
	2445	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
	2446	then
	2447	line="$line1"
	2448	fi
	2449
	2450	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2451	then
[1101]	2452	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
	2453	line="$line "
[1083]	2454	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
	2455	found=true
	2456	fi
	2457
	2458	done < $tmp_check
	2459	copts_check="$copts_check -D__check -D__parallel"
	2460
[807]	2461	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
	2462
[1101]	2463	# GET MAKE OUTPUT
[807]	2464	if [[ $? != 0 ]]
	2465	then
[815]	2466	printf "\n +++ error during make."
	2467	answer=dummy
	2468	printf "\n\n"
[818]	2469	if [[ $silent == false ]]
[815]	2470	then
[818]	2471	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2472	do
	2473	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2474	read answer
	2475	done
	2476	if [[ $answer = a \|\| $answer = A ]]
	2477	then
	2478	printf "\n +++ Aborting..."
	2479	rm -rf $check_sources
	2480	locat=normal; exit
	2481	else
	2482	skip_check=true
	2483	fi
[815]	2484	else
	2485	skip_check=true
	2486	fi
[807]	2487	fi
	2488	else
	2489	cp $PALM_BIN/check_namelist_files.x ./
	2490	fi
	2491
[920]	2492	cp $filename_input ./PARIN
[807]	2493	if [[ $check_restart == 1 ]]
	2494	then
[892]	2495	cp $filenamef ./PARINF
[807]	2496	fi
	2497
[892]	2498	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
[818]	2499	then
	2500	printf "\n *** adding topography data"
[892]	2501	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
[818]	2502
[1101]	2503	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
	2504	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
	2505	# WHICH REQUIRE SUFFICIENT MEMORY
[818]	2506	ulimit -s unlimited
	2507	fi
	2508
[1101]	2509	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
[807]	2510	cat > ENVPAR << %%END%%
[823]	2511	&envpar run_identifier = '$fname', host = '$host',
[807]	2512	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2513	maximum_parallel_io_streams = $maximum_parallel_io_streams,
	2514	maximum_cpu_time_allowed = ${cpumax}.,
	2515	revision = '$global_revision',
	2516	local_dvrserver_running = $local_dvrserver_running /
	2517
	2518	%%END%%
	2519
[1101]	2520	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
	2521	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
	2522	then
[807]	2523	printf "\n +++ WARNING: check_namelist_files.x not found."
	2524	answer=dummy
	2525	printf "\n\n"
[818]	2526
	2527	if [[ $silent == false ]]
[807]	2528	then
[818]	2529	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2530	do
	2531	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2532	read answer
	2533	done
	2534	if [[ $answer = a \|\| $answer = A ]]
	2535	then
	2536	printf "\n +++ Aborting..."
	2537	rm -rf $check_sources
	2538	locat=normal; exit
	2539	else
[1101]	2540	printf "\n *** skipping parameter file check."
[818]	2541	fi
	2542	fi
	2543
[815]	2544	elif [[ $skip_check == false ]]
	2545	then
[1101]	2546	# STARTING THE PARAMETER FILE CHECK
[807]	2547	printf "\n\n *** starting parameter file check..."
	2548
[1101]	2549	# CHECKING THE P3D FILE
[920]	2550	printf "\n\n (1) checking $filename_input"
[931]	2551	echo "$numprocs 0 0" > VARIN
[807]	2552	errors=`./check_namelist_files.x < VARIN 2>&1`
	2553
	2554	check_error=false
	2555	if [[ "$errors" == "" ]]
	2556	then
	2557	printf " --> o.k."
	2558	else
	2559	printf " --> failed."
	2560	check_error=true
	2561	printf "\n\n $errors"
	2562	fi
	2563
[1101]	2564	# CHECKING THE PD3F FILE IF NECESSARY
[807]	2565	if [[ $check_restart == 1 && $check_error == false ]]
	2566	then
[892]	2567	printf "\n\n (2) checking $filenamef"
[807]	2568
[1101]	2569	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
	2570	# IN &INIPAR LIST
[807]	2571	found=false
[1101]	2572	cat PARINF \| while read line
[807]	2573	do
	2574	line=$(echo $line\|sed 's/ //g')
	2575	if [[ $line == "&inipar" ]]
	2576	then
	2577	start_search=true
	2578	fi
	2579
	2580	if [[ $start_search == true ]]
	2581	then
	2582	if [[ $line == "initializing_actions='read_restart_data'" ]]
	2583	then
	2584	found=true
	2585	break
	2586	fi
	2587	fi
	2588
	2589	if [[ $line == "/" ]]
	2590	then
	2591	start_search=false
	2592	fi
	2593
	2594	done
	2595
	2596	if [[ $found = false ]]
	2597	then
	2598	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
	2599	printf "\n in &inipar list in $fname$p3df_suffix."
	2600	rm -rf $check_sources
	2601	locat=check_namelist; exit
	2602	fi
	2603
[1101]	2604	# READ max_user_pr FROM FILES
[931]	2605	if [[ -f parin_for_check ]]
	2606	then
	2607	read max_pr_user < parin_for_check
	2608	else
	2609	max_user_pr=0
	2610	fi
	2611
	2612	echo "$numprocs 1 $max_pr_user" > VARIN
[807]	2613	errors=`./check_namelist_files.x < VARIN 2>&1`
	2614
	2615	if [[ "$errors" == "" ]]
	2616	then
	2617	printf " --> o.k."
	2618	else
	2619	printf " --> failed."
	2620	check_error=true
	2621	printf "\n\n $errors"
	2622	fi
	2623	fi
	2624
[1101]	2625	# REPORT ERRORS AND CONTINUE/EXIT
[807]	2626	if [[ $check_error == true ]]
	2627	then
	2628	printf "\n +++ errors found in the parameter file!\n"
	2629	answer=dummy
	2630	printf "\n\n"
	2631
	2632	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2633	do
[1101]	2634	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2635	read answer
[807]	2636	done
	2637
	2638	if [[ $answer = a \|\| $answer = A ]]
	2639	then
	2640	printf "\n +++ Aborting..."
	2641	rm -rf $check_sources
	2642	locat=normal; exit
	2643	fi
	2644	else
	2645	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
	2646	fi
	2647	rm -rf $check_sources
	2648	fi
	2649	else
[1103]	2650	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
[807]	2651	fi
	2652
[818]	2653	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
	2654	rm -rf $check_sources
[807]	2655	cd $working_directory
	2656
[892]	2657
[1199]	2658	# DETERMINE PATH FOR MAKE DEPOSITORY
	2659	if [[ $do_batch = false \|\| $create_executable_for_batch = true ]]
	2660	then
	2661
	2662	line=""
	2663	grep "%depository_path" $config_file > tmp_mrun
	2664	while read line
	2665	do
	2666	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2667	then
	2668	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
	2669	then
	2670	global_depository_path=`echo $line \| cut -d" " -s -f2`
	2671	fi
	2672	fi
	2673	done < tmp_mrun
	2674
	2675	line=""
	2676	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2677	while read line
	2678	do
	2679	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2680	then
	2681	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2682	then
	2683	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2684	fi
	2685	fi
	2686	done < tmp_mrun
	2687
	2688	if [[ "$local_depository_path" = "" ]]
	2689	then
	2690	if [[ "$global_depository_path" != "" ]]
	2691	then
	2692	local_depository_path=$global_depository_path
	2693	else
	2694	printf "\n\n +++ no depository path found in configuration file"
	2695	printf "\n for local host \"$localhost\" "
	2696	printf "\n please set \"\%depository_path\" in configuration file\n"
	2697	locat=config_file; exit
	2698	fi
	2699	fi
	2700	eval local_depository_path=$local_depository_path
	2701	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2702	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
	2703
	2704
	2705	basename=`echo $mainprog \| cut -f1 -d"."`
	2706	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2707	if [[ ! -f $make_depository ]]
	2708	then
	2709	printf "\n"
	2710	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2711	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2712	fi
	2713
	2714	fi
	2715
	2716
[807]	2717	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2718	# CHENDE AKTIONEN DURCHGEFUEHRT
[1]	2719	if [[ $do_batch = false ]]
	2720	then
	2721
	2722
	2723	# TEMPORAEREN KATALOG ERZEUGEN
	2724	mkdir -p $TEMPDIR
	2725	chmod go+rx $TEMPDIR
	2726	tmpcreate=true
	2727
	2728
	2729	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2730	# TEMPORAERES VERZEICHNIS KOPIEREN
	2731	if [[ $do_compile = true ]]
	2732	then
	2733
	2734	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2735	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2736	if [[ $localhost = nech ]]
	2737	then
	2738	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2739	if mkdir -p $TEMPDIR_COMPILE
	2740	then
	2741	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2742	printf "\n is generated as temporary directory for cross compiling\n"
	2743	else
	2744	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2745	printf "\n needed for cross compilation failed"
	2746	locat=compile
	2747	exit
	2748	fi
	2749	else
	2750	TEMPDIR_COMPILE=$TEMPDIR
	2751	fi
	2752
[1199]	2753	cp $make_depository $TEMPDIR_COMPILE
	2754	cd $TEMPDIR_COMPILE
	2755	tar -xf $make_depository > /dev/null 2>&1
	2756	cd - > /dev/null
[1]	2757
[82]	2758	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2759
[1]	2760	else
[475]	2761
[1]	2762	cp $executable ${TEMPDIR}/a.out
[475]	2763
[1]	2764	fi
	2765
	2766
	2767	# WECHSEL IN TEMPORAEREN KATALOG
[475]	2768	cd $TEMPDIR
[1]	2769	printf "\n *** changed to temporary directory: $TEMPDIR"
	2770
	2771
	2772	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2773	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2774	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2775	# ERMITTELN
	2776	(( i = 0 ))
	2777	while (( i < iout ))
	2778	do
	2779	(( i = i + 1 ))
	2780	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2781	then
	2782	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2783	else
	2784	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2785	fi
	2786	done
	2787
	2788
[1199]	2789	# IF REQUIRED, START WITH COMPILING ACTIONS
[1]	2790	if [[ $do_compile = true ]]
	2791	then
	2792
	2793
[1199]	2794	if [[ -f a.out ]]
[475]	2795	then
[82]	2796
[1199]	2797	# EXECUTABLE WAS CREATED DURING INTERACTIVE CALL OF MRUN
	2798	printf "\n\n\n *** executable a.out found"
	2799	printf "\n no compilation required \n"
	2800
[1]	2801	else
[807]	2802
[1199]	2803	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
	2804	printf "\n\n\n *** compilation starts \n$striche\n"
	2805	printf " *** compilation with make using following options:\n"
	2806	printf " make depository: $make_depository"
	2807	if [[ "$mopts" != "" ]]
	2808	then
	2809	printf " make options: $mopts\n"
	2810	fi
	2811	printf " compilername: $compiler_name\n"
	2812	printf " compiler options: $fopts\n"
	2813	printf " preprocessor directives: $cpp_options \n"
	2814	printf " linker options: $lopts \n"
	2815	if [[ "$modules" != "" ]]
	2816	then
	2817	printf " modules to be load: $modules \n"
	2818	fi
	2819	printf " source code files: $source_list \n"
[1]	2820
[1199]	2821	if [[ $localhost = nech ]]
	2822	then
	2823	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2824	cp $TEMPDIR_COMPILE/a.out .
	2825	[[ $? != 0 ]] && compile_error=true
	2826	rm -rf $TEMPDIR_COMPILE
	2827	elif [[ $localhost = ibmh ]]
	2828	then
	2829	printf " compiler is called via ssh on \"plogin1\" \n"
	2830	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2831	[[ ! -f a.out ]] && compile_error=true
	2832	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2833	elif [[ $localhost = lcsgib ]]
	2834	then
	2835	printf " compiler is called via ssh on \"bicegate0\" \n"
	2836	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2837	[[ ! -f a.out ]] && compile_error=true
	2838	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2839	elif [[ $localhost = lcsgih ]]
	2840	then
	2841	printf " compiler is called via ssh on \"hicegate0\" \n"
	2842	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
	2843	[[ ! -f a.out ]] && compile_error=true
	2844	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2845	elif [[ $localhost = lcflow ]]
	2846	then
	2847	printf " compiler is called via ssh on \"flow\" \n"
	2848	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2849	[[ ! -f a.out ]] && compile_error=true
	2850	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2851	elif [[ $localhost = lccrayf ]]
	2852	then
	2853	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	2854	else
	2855	[[ "$init_cmds" != "" ]] && eval $init_cmds
	2856	[[ "$module_calls" != "" ]] && eval $module_calls
	2857	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	2858	fi
[181]	2859
[1199]	2860	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2861	then
	2862	printf "\n +++ error occured while compiling or linking"
	2863	locat=compile
	2864
[181]	2865	exit
[1199]	2866	else
	2867	printf "$striche\n *** compilation finished \n"
	2868	fi
	2869
[1]	2870	fi
[1199]	2871
[1]	2872	fi
	2873
	2874
	2875	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2876	if [[ $local_compile = true ]]
	2877	then
	2878	cd $HOME
	2879	rm -rf $TEMPDIR
	2880	locat=local_compile; exit
	2881	fi
	2882
	2883
	2884	# BEREITSTELLEN DER INPUT-DATEIEN
	2885	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2886	(( i = 0 ))
	2887	while (( i < iin ))
	2888	do
	2889	(( i = i + 1 ))
	2890	if (( i == 1 ))
	2891	then
	2892	printf "\n\n *** providing INPUT-files:\n$striche"
	2893	fi
	2894
	2895
	2896	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2897	if [[ "${transin[$i]}" = unavailable ]]
	2898	then
	2899	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2900	then
	2901	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2902	printf "\n is not available!"
	2903	else
	2904	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2905	printf "\n is not available!"
	2906	fi
	2907	continue
	2908	fi
	2909
	2910	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2911	files_for_pes=false; datentyp=file
	2912	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2913	then
	2914	files_for_pes=true; datentyp=directory
	2915	actionin[$i]=""
	2916	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2917	then
	2918	actionin[$i]=""
	2919	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2920	then
	2921	files_for_pes=true; datentyp=directory
	2922	actionin[$i]="ar"
	2923	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2924	then
	2925	actionin[$i]="ar"
	2926	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2927	then
	2928	files_for_pes=true; datentyp=directory
	2929	actionin[$i]="fl"
	2930	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2931	then
	2932	actionin[$i]="fl"
	2933	fi
	2934
	2935	if [[ $files_for_pes = true ]]
	2936	then
	2937	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2938	else
	2939	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2940	fi
	2941
	2942	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2943	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2944	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2945	# SERVER ZU HOLEN
	2946	if [[ "${actionin[$i]}" = fl ]]
	2947	then
	2948	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2949	if [[ $files_for_pes = false ]]
	2950	then
	2951	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2952	then
	2953	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2954	got_tmp[$i]=true
	2955	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2956	then
	2957	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2958	printf "\n *** trying to use backup copy in \"$WORK\" "
	2959	cp $WORK/${frelin[$i]} ${localin[$i]}
	2960	else
	2961	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2962	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2963	printf "\n *** trying to get copy from archive"
	2964	actionin[$i]=ar
	2965	fi
	2966	else
	2967	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2968	then
	2969	mkdir ${localin[$i]}
[149]	2970	cd $tmp_data_catalog/${frelin[$i]}
	2971	for file in $(ls *)
	2972	do
	2973	ln $file $TEMPDIR/${localin[$i]}
	2974	done
	2975	cd $TEMPDIR
[1]	2976	got_tmp[$i]=true
	2977	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2978	then
	2979	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2980	printf "\n *** trying to use backup copy in \"$WORK\" "
	2981	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2982	else
	2983	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2984	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2985	printf "\n *** trying to get copy from archive"
	2986	actionin[$i]=ar
	2987	fi
	2988	fi
	2989	fi
	2990
	2991
	2992	# DATEI LIEGT AUF ARCHIV-SERVER
	2993	if [[ "${actionin[$i]}" = ar ]]
	2994	then
	2995
	2996	if [[ $files_for_pes = false ]]
	2997	then
	2998	printf "\n file will be restored from archive-system ($archive_system)!"
	2999	else
	3000	printf "\n directory will be restored from archive-system ($archive_system)!"
	3001	fi
	3002
	3003	file_restored=false
	3004
	3005	if [[ $archive_system = asterix ]]
	3006	then
	3007	do_stagein=true
	3008	(( stagein_anz = 0 ))
	3009	while [[ $do_stagein = true ]]
	3010	do
	3011	if [[ $files_for_pes = false ]]
	3012	then
	3013	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	3014	else
	3015	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	3016	fi
	3017	cat STAGEIN_OUTPUT
	3018	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	3019	then
	3020	file_restored=true
	3021	do_stagein=false
	3022	else
	3023	(( stagein_anz = stagein_anz + 1 ))
	3024	if (( stagein_anz == 10 ))
	3025	then
	3026	printf "\n +++ stagein stoped after 10 tries"
	3027	locat=stage
	3028	exit
	3029	fi
	3030	printf "\n +++ restoring from archive failed, trying again:"
	3031	sleep 900
	3032	fi
	3033	done
	3034	elif [[ $archive_system = DMF ]]
	3035	then
	3036	if [[ $files_for_pes = false ]]
	3037	then
	3038	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	3039	locat=DMF
	3040	exit
	3041	else
	3042	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	3043	cp -r $ARCHIVE/${frelin[$i]} $PWD
	3044	file_restored=true
	3045	fi
	3046	elif [[ $archive_system = tivoli ]]
	3047	then
	3048	if [[ $files_for_pes = false ]]
	3049	then
[399]	3050	if [[ $localhost = lcsgih ]]
[1]	3051	then
[1094]	3052	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	3053	else
[1094]	3054	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	3055	fi
	3056	else
	3057	(( inode = 0 ))
	3058	while (( inode < nodes ))
	3059	do
[399]	3060	if [[ $localhost = lcsgih ]]
[1]	3061	then
[1094]	3062	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	3063	else
[1094]	3064	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	3065	fi
	3066	(( inode = inode + 1 ))
	3067	done
	3068	fi
	3069	file_restored=true
	3070	elif [[ $archive_system = ut ]]
	3071	then
	3072	if [[ $files_for_pes = false ]]
	3073	then
	3074	cp $UT/${frelin[$i]} .
	3075	else
	3076	(( inode = 0 ))
	3077	while (( inode < nodes ))
	3078	do
	3079	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	3080	(( inode = inode + 1 ))
	3081	done
	3082	fi
	3083	file_restored=true
	3084	else
	3085	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	3086	locat=rearchive
	3087	exit
	3088	fi
	3089
	3090	if [[ $file_restored = true ]]
	3091	then
	3092
	3093	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	3094	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	3095	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	3096	if [[ $files_for_pes = false ]]
	3097	then
	3098	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	3099	else
	3100	mkdir $tmp_data_catalog/${frelin[$i]}
	3101	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	3102	fi
	3103	got_tmp[$i]=true
	3104
	3105	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	3106	mv ${frelin[$i]} ${localin[$i]}
	3107
	3108	fi
	3109	fi
	3110
	3111
	3112	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	3113	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	3114	then
	3115
	3116	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	3117	then
	3118
	3119	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	3120	printf "\n file will be provided for $numprocs processors"
	3121	mkdir ${localin[$i]}
	3122	ival=$numprocs
	3123	(( ii = 0 ))
	3124	while (( ii <= ival-1 ))
	3125	do
	3126	if (( ii < 10 ))
	3127	then
	3128	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	3129	elif (( ii < 100 ))
	3130	then
	3131	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	3132	elif (( ii < 1000 ))
	3133	then
	3134	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	3135	else
	3136	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	3137	fi
	3138	(( ii = ii + 1 ))
	3139	done
	3140
	3141	else
	3142
	3143	if [[ $files_for_pes = true ]]
	3144	then
	3145
	3146	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	3147	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	3148	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	3149	# PER MOVE UMBENANNT WERDEN
	3150	printf "\n providing $numprocs files for the respective processors"
	3151	mkdir ${localin[$i]}
[183]	3152	if [[ $link_local_input = true ]]
	3153	then
	3154	printf " using ln -f\n"
	3155	cd ${absnamein[$i]}
	3156	for file in $(ls *)
	3157	do
	3158	ln -f $file ${localin[$i]}
	3159	done
	3160	cd $TEMPDIR
	3161	fi
	3162	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	3163	if [[ ! -f "${localin[$i]}/_0000" ]]
	3164	then
	3165	if [[ $link_local_input = true ]]
	3166	then
	3167	printf " ln failed for .../_0000, using cp...\n"
	3168	fi
	3169	cp -r ${absnamein[$i]}/* ${localin[$i]}
	3170	fi
[1]	3171
	3172	else
	3173	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	3174	if [[ $link_local_input = true ]]
	3175	then
	3176	printf " using ln -f\n"
	3177	ln -f ${absnamein[$i]} ${localin[$i]}
	3178	fi
	3179	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	3180	if [[ ! -f "${localin[$i]}" ]]
	3181	then
	3182	if [[ $link_local_input = true ]]
	3183	then
	3184	printf " ln failed, using cp...\n"
	3185	fi
	3186	cp ${absnamein[$i]} ${localin[$i]}
	3187	fi
[1]	3188	fi
	3189	fi
	3190	fi
	3191
	3192	done
	3193	if (( i != 0 ))
	3194	then
	3195	printf "\n$striche\n *** all INPUT-files provided \n"
	3196	fi
	3197
	3198
	3199	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	3200	(( i = 0 ))
	3201	while (( i < iic ))
	3202	do
	3203	(( i = i + 1 ))
	3204	if (( i == 1 ))
	3205	then
	3206	printf "\n\n *** execution of INPUT-commands:\n$striche"
	3207	fi
	3208	printf "\n >>> ${in_command[$i]}"
	3209	eval ${in_command[$i]}
	3210	if (( i == iic ))
	3211	then
	3212	printf "\n$striche\n"
	3213	fi
	3214	done
	3215
	3216
	3217	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	3218	cpurest=${cpumax}.
	3219
	3220
[260]	3221	# START DVR STREAMING SERVER
	3222	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3223	then
	3224	if [[ "$dvr_server" != "" ]]
	3225	then
	3226
	3227	printf "\n\n *** preparing the dvr streaming server configuration file"
	3228
	3229	# Check, if a dvr server is already running
	3230	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	3231	if [[ "$running_dvrserver_id" != "" ]]
	3232	then
	3233
[261]	3234	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	3235	printf "\n This server is used instead starting a new one!"
[261]	3236	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	3237
	3238	else
	3239
	3240	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	3241	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	3242	then
	3243	cp ${PALM_BIN}/.dvrserver.config .
	3244
	3245	# Entering the BASEDIR, UID and GID into this file
	3246	user_id=`id -u`
	3247	group_id=`id -g`
	3248	# & is needed as seperator, because TEMPDIR contains /
	3249	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	3250	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	3251	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	3252	mv .dvrserver.3 .dvrserver.config
	3253	rm .dvrserver.1 .dvrserver.2
	3254
	3255	# Start dvr server in background, get his id and print on terminal
	3256	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	3257	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	3258	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	3259	local_dvrserver_running=.TRUE.
	3260	else
	3261	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	3262	printf "\n \"$PALM_BIN\" "
	3263	locat=dvr
	3264	exit
	3265	fi
	3266
	3267	fi
	3268
	3269	else
	3270	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	3271	fi
	3272	fi
	3273
	3274
	3275	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	3276	# LESEN VON PALM)
	3277	cat > ENVPAR << %%END%%
	3278	&envpar run_identifier = '$fname', host = '$localhost',
	3279	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
[759]	3280	maximum_parallel_io_streams = $maximum_parallel_io_streams,
[260]	3281	maximum_cpu_time_allowed = ${cpumax}.,
	3282	revision = '$global_revision',
	3283	local_dvrserver_running = $local_dvrserver_running /
	3284
	3285	%%END%%
	3286
	3287
[1]	3288	# PROGRAMMSTART
	3289	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	3290	PATH=$PATH:$TEMPDIR
	3291
[359]	3292	# MPI debug option (argument checking, slows down execution due to increased latency)
	3293	if [[ "$mpi_debug" = true ]]
	3294	then
	3295	export MPI_CHECK_ARGS=1
	3296	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	3297	fi
	3298
[693]	3299	if [[ "$totalview" = true ]]
	3300	then
	3301	printf "\n *** totalview debugger will be used"
	3302	tv_opt="-tv"
	3303	else
	3304	tv_opt=""
	3305	fi
	3306
[1]	3307	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	3308	then
	3309	if [[ "$ENVIRONMENT" = BATCH ]]
	3310	then
[211]	3311	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	3312	then
	3313	printf "\n +++ debug is allowed in interactive mode only"
	3314	locat=debug
	3315	exit
	3316	fi
[1]	3317	fi
[1096]	3318	if [[ $localhost = ibmh ]]
[1]	3319	then
	3320
	3321	# SETUP THE IBM MPI ENVIRONMENT
	3322	export MP_SHARED_MEMORY=yes
	3323	export AIXTHREADS_SCOPE=S
	3324	export OMP_NUM_THREADS=$threads_per_task
	3325	export AUTHSTATE=files
	3326	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3327
	3328	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	3329	export MP_ADAPTER_USE=shared
	3330	export MP_CPU_USE=multiple
	3331	export MP_TIMEOUT=1200
	3332
	3333	unset MP_TASK_AFFINITY
	3334
	3335	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	3336	#(( ii = 1 ))
	3337	#while (( ii <= $numprocs ))
	3338	#do
	3339	# echo $localhost_realname >> hostfile
	3340	# (( ii = ii + 1 ))
	3341	#done
	3342	#export MP_HOSTFILE=hostfile
	3343
	3344	if [[ "$LOADLBATCH" = yes ]]
	3345	then
	3346	totalview poe a.out $ROPTS
	3347	else
	3348	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3349	export TVDSVRLAUNCHCMD=ssh
	3350	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3351	fi
[211]	3352	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	3353	then
	3354	# CURRENTLY NO DEBUGGER ON LCSGI
	3355	if [[ $run_coupled_model = true ]]
	3356	then
	3357	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	3358	locat=debug
	3359	exit
[223]	3360	else
	3361	echo "no_coupling" > runfile_atmos
[211]	3362	fi
	3363	(( ii = $numprocs / $threads_per_task ))
	3364	export OMP_NUM_THREADS=$threads_per_task
	3365	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3366	if [[ $threads_per_task != 1 ]]
	3367	then
	3368	printf "\n threads per task: $threads_per_task"
	3369	fi
	3370	printf "\n\n"
[223]	3371	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3372	then
	3373	# export MPI_LAUNCH_TIMEOUT=360
	3374	if [[ "$totalview" = true ]]
	3375	then
	3376	printf "\n running totalview debugger"
[693]	3377	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
[223]	3378	else
	3379	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3380	fi
	3381	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3382	then
	3383	# ulimit -s 300000 # A too large stack size causes problems
	3384	# export MV2_NUM_PORTS=2
	3385	# export MV2_CPU_MAPPING=0:1:2:3
[362]	3386	if [[ "$totalview" = true ]]
	3387	then
	3388	printf "\n running totalview debugger"
[693]	3389	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
[362]	3390	else
	3391	mpiexec ./a.out $ROPTS < runfile_atmos
	3392	fi
[223]	3393	fi
[1]	3394	else
	3395	printf "\n +++ no debug available on \"$localhost\" "
	3396	printf "\n or not implemented in mrun so far"
	3397	locat=debug
	3398	exit
	3399	fi
[622]	3400
	3401	# end debug mode
[1]	3402	else
[622]	3403
	3404	# normal execution
[1]	3405	if [[ -n $numprocs ]]
	3406	then
	3407	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	3408	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	3409	then
	3410	# SETUP THE IBM MPI ENVIRONMENT
[693]	3411	if [[ $host != ibmh && $host != ibmkisti ]]
[312]	3412	then
	3413	export MP_SHARED_MEMORY=yes
	3414	export AIXTHREAD_SCOPE=S
	3415	export OMP_NUM_THREADS=$threads_per_task
	3416	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	3417	export AUTHSTATE=files
	3418	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3419	# export MP_PRINTENV=yes
[1]	3420
[312]	3421	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	3422	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	3423	export MP_WAIT_MODE=poll
	3424	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	3425	fi
[693]	3426
	3427	if [[ $host = ibmkisti ]]
	3428	then
	3429	export LANG=en_US
	3430	export MP_SHARED_MEMORY=yes
[696]	3431	if [[ $threads_per_task = 1 ]]
	3432	then
	3433	export MP_SINGLE_THREAD=yes
	3434	export MEMORY_AFFINITY=MCM
	3435	else
	3436	export OMP_NUM_THREADS=$threads_per_task
	3437	fi
[693]	3438	fi
	3439
[1]	3440	if [[ "$LOADLBATCH" = yes ]]
	3441	then
	3442	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	3443	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3444	then
[102]	3445	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3446	else
[343]	3447	if [[ $run_coupled_model = false ]]
	3448	then
	3449	if [[ "$ocean_file_appendix" = true ]]
	3450	then
	3451	echo "precursor_ocean" > runfile_atmos
	3452	else
	3453	echo "precursor_atmos" > runfile_atmos
	3454	fi
	3455	else
	3456	(( iia = $numprocs_atmos / $threads_per_task ))
	3457	(( iio = $numprocs_ocean / $threads_per_task ))
	3458	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3459	printf "\n using $coupled_mode coupling"
	3460	printf "\n\n"
	3461	echo "coupled_run $iia $iio" > runfile_atmos
	3462	fi
	3463	poe ./a.out $ROPTS < runfile_atmos
[1]	3464	fi
	3465	else
[622]	3466	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
[1]	3467	then
[102]	3468	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[693]	3469	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
[1]	3470	then
	3471	if [[ -f $hostfile ]]
	3472	then
	3473	cp $hostfile hostfile
	3474	else
	3475	(( ii = 1 ))
	3476	while (( ii <= $numprocs ))
	3477	do
	3478	echo $localhost_realname >> hostfile
	3479	(( ii = ii + 1 ))
	3480	done
	3481	fi
	3482	export MP_HOSTFILE=hostfile
[331]	3483	if [[ $run_coupled_model = false ]]
	3484	then
	3485	if [[ "$ocean_file_appendix" = true ]]
	3486	then
	3487	echo "precursor_ocean" > runfile_atmos
	3488	else
	3489	echo "precursor_atmos" > runfile_atmos
	3490	fi
	3491	else
	3492	(( iia = $numprocs_atmos / $threads_per_task ))
	3493	(( iio = $numprocs_ocean / $threads_per_task ))
	3494	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3495	printf "\n using $coupled_mode coupling"
	3496	printf "\n\n"
	3497	echo "coupled_run $iia $iio" > runfile_atmos
	3498	fi
[622]	3499	if [[ $localhost = ibmy ]]
	3500	then
	3501	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3502	else
	3503	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
	3504	fi
[331]	3505
[1]	3506	else
	3507	if [[ "$host_file" = "" ]]
	3508	then
	3509	printf "\n +++ no hostfile given in configuration file"
	3510	locat=config_file
	3511	exit
	3512	else
	3513	eval host_file=$host_file
	3514	fi
	3515	export MP_HOSTFILE=$host_file
[102]	3516	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3517	fi
	3518	fi
[251]	3519	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3520	then
	3521	(( ii = nodes ))
	3522	if [[ $ii = 1 ]]
	3523	then
	3524	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3525	export MPIPROGINF=YES
[61]	3526	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3527	echo "*** execution on single node with mpirun"
[102]	3528	mpirun -np $numprocs ./a.out $ROPTS
[1]	3529	else
	3530	(( i = 0 ))
	3531	while (( i < ii ))
	3532	do
	3533	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3534	(( i = i + 1 ))
	3535	done
	3536
	3537	echo "#!/bin/sh" > mpi_exec_shell
	3538	echo " " >> mpi_exec_shell
	3539	echo "set -u" >> mpi_exec_shell
	3540	echo "F_ERRCNT=0" >> mpi_exec_shell
	3541	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3542	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3543	echo "cpurest=$cpurest" >> mpi_exec_shell
	3544	echo "fname=$fname" >> mpi_exec_shell
	3545	echo "localhost=$localhost" >> mpi_exec_shell
	3546	echo "return_addres=$return_addres" >> mpi_exec_shell
	3547	echo "return_username=$return_username" >> mpi_exec_shell
	3548	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3549	echo "write_binary=$write_binary" >> mpi_exec_shell
	3550	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3551	echo " " >> mpi_exec_shell
	3552	echo "export F_ERRCNT" >> mpi_exec_shell
	3553	echo "export MPIPROGINV" >> mpi_exec_shell
	3554	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3555	echo "export cpurest" >> mpi_exec_shell
	3556	echo "export fname" >> mpi_exec_shell
	3557	echo "export localhost" >> mpi_exec_shell
	3558	echo "export return_addres" >> mpi_exec_shell
	3559	echo "export return_username" >> mpi_exec_shell
	3560	echo "export tasks_per_node" >> mpi_exec_shell
	3561	echo "export write_binary" >> mpi_exec_shell
	3562	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3563	echo " " >> mpi_exec_shell
[102]	3564	echo "exec ./a.out" >> mpi_exec_shell
[1]	3565
	3566	chmod u+x mpi_exec_shell
	3567	export MPIPROGINF=YES
	3568	mpirun -f multinode_config &
	3569	wait
	3570
	3571	fi
[440]	3572	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
[1]	3573	then
	3574
	3575	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3576	# DOES NOT EXIST
[1197]	3577	if [[ $host != lccrayf && $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
[1]	3578	then
[179]	3579	if [[ -f $hostfile ]]
	3580	then
	3581	cp $hostfile hostfile
[746]	3582	(( ii = $numprocs / $threads_per_task ))
[179]	3583	else
	3584	(( ii = 1 ))
	3585	while (( ii <= $numprocs / $threads_per_task ))
	3586	do
	3587	echo $localhost_realname >> hostfile
	3588	(( ii = ii + 1 ))
	3589	done
	3590	fi
	3591	eval zeile=\"`head -n $ii hostfile`\"
	3592	printf "\n *** running on: $zeile"
[1]	3593	fi
[179]	3594
[1]	3595	(( ii = $numprocs / $threads_per_task ))
	3596	export OMP_NUM_THREADS=$threads_per_task
[696]	3597	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3598	if [[ $threads_per_task != 1 ]]
	3599	then
[405]	3600	# increase stack size to unlimited, because large runs
	3601	# may abort otherwise
	3602	ulimit -Ss unlimited
	3603	printf "\n threads per task: $threads_per_task stacksize: unlimited"
[1]	3604	fi
[102]	3605	if [[ $run_coupled_model = false ]]
[1]	3606	then
[291]	3607	if [[ "$ocean_file_appendix" = true ]]
	3608	then
	3609	echo "precursor_ocean" > runfile_atmos
	3610	else
	3611	echo "precursor_atmos" > runfile_atmos
	3612	fi
[102]	3613	printf "\n\n"
[179]	3614	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3615	then
[221]	3616	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3617	then
[366]	3618	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
	3619	# export MPI_DSM_DISTRIBUTE=1
	3620	# MPI_DSM_CPULIST: pin MPI processes to cores
[377]	3621	if [[ $use_openmp = false ]]
	3622	then
[412]	3623	if [[ "$sgi_feature" = ice2 ]]
	3624	then
	3625	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
	3626	else
	3627	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
	3628	fi
[622]	3629	else
	3630	unset MPI_DSM_CPULIST
[377]	3631	fi
[366]	3632	# MPI_IB_RAILS: use both IB rails on ICE2
	3633	export MPI_BUFS_PER_HOST=512
	3634	export MPI_IB_RAILS=2
[369]	3635	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
	3636	export MPI_CONNECTIONS_THRESHOLD=8192
[738]	3637	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
[562]	3638	export MPI_TYPE_DEPTH=20
[738]	3639	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
[683]	3640	export MPI_GROUP_MAX=64
[738]	3641	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
[693]	3642	if [[ $use_openmp = true ]]
	3643	then
	3644	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
	3645	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
	3646	else
	3647	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
	3648	fi
[388]	3649
	3650	# next is test for openmp usage
[622]	3651	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
	3652	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
[221]	3653	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3654	then
[374]	3655	export MV2_NUM_PORTS=2
[376]	3656	# The default setting of MV2_CPU_MAPPING gives best results
[405]	3657	# export MV2_ENABLE_AFFINITY=1
[376]	3658	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
[412]	3659	# if [[ "$sgi_feature" = ice2 ]]
	3660	# then
	3661	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
	3662	# else
	3663	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
	3664	# fi
[678]	3665	if [[ $use_openmp = true ]]
	3666	then
	3667	unset MV2_CPU_MAPPING
	3668	export MV2_ENABLE_AFFINITY=0
	3669	fi
[412]	3670	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
[678]	3671	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
[622]	3672	if [[ $use_openmp = true ]]
[405]	3673	then
[678]	3674	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
[693]	3675	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
[405]	3676	else
[693]	3677	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
[405]	3678	fi
[738]	3679	elif [[ "$mpilib" = impi ]]
	3680	then
[1058]	3681	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
	3682	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
[221]	3683	fi
[1197]	3684	elif [[ $host = lccrayf ]]
	3685	then
	3686	aprun -n $ii -N $tasks_per_node -m ${memory}M a.out $ROPTS < runfile_atmos
[892]	3687	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
[179]	3688	then
[544]	3689	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[755]	3690	elif [[ $host = lcflow ]]
	3691	then
	3692	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
[1021]	3693	elif [[ $host = lcsb ]]
	3694	then
	3695	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
[1040]	3696	elif [[ $host = lckiaps ]]
	3697	then
	3698	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
[1090]	3699	elif [[ $host = lckyu* ]]
	3700	then
[1106]	3701	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
[164]	3702	else
[1106]	3703	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3704	fi
[1]	3705	else
[164]	3706
[206]	3707	# currently there is no full MPI-2 support on ICE and XT4
	3708	(( iia = $numprocs_atmos / $threads_per_task ))
	3709	(( iio = $numprocs_ocean / $threads_per_task ))
	3710	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3711	printf "\n using $coupled_mode coupling"
[102]	3712	printf "\n\n"
[164]	3713
[206]	3714	if [[ $coupled_mode = "mpi2" ]]
[164]	3715	then
[206]	3716	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3717	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3718	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3719	then
[197]	3720
[221]	3721	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3722	then
	3723	# export MPI_LAUNCH_TIMEOUT=360
	3724	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3725	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3726	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3727	then
	3728	# ulimit -s 300000 # A too large stack size causes problems
	3729	# export MV2_NUM_PORTS=2
	3730	# export MV2_CPU_MAPPING=0:1:2:3
	3731	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3732	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3733	fi
[197]	3734
[1197]	3735	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
[206]	3736	then
[197]	3737
[206]	3738	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3739	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3740
	3741	else
	3742	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3743	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3744	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3745	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3746	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3747	fi
	3748	wait
	3749
[164]	3750	else
	3751
[206]	3752	echo "coupled_run $iia $iio" > runfile_atmos
	3753	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3754	then
	3755
[221]	3756	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3757	then
	3758	# export MPI_LAUNCH_TIMEOUT=360
	3759	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3760	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3761	then
	3762	# ulimit -s 300000 # A too large stack size causes problems
	3763	# export MV2_NUM_PORTS=2
	3764	# export MV2_CPU_MAPPING=0:1:2:3
	3765	mpiexec ./a.out $ROPTS < runfile_atmos
	3766	fi
[206]	3767
[1197]	3768	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
[206]	3769	then
	3770
	3771	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3772
[718]	3773	elif [[ $host = lck \|\| $host = lckordi ]]
[367]	3774	then
[1108]	3775
	3776	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
	3777
	3778	elif [[ $host = lckyu* ]]
	3779	then
	3780
	3781	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
	3782
[206]	3783	fi
	3784	wait
[164]	3785	fi
[102]	3786
[206]	3787	fi
[440]	3788	elif [[ $host = lckyoto ]]
	3789	then
	3790	set -xv
	3791	export P4_RSHCOMMAND=plesh
	3792	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
	3793	if [[ "$ENVIRONMENT" = BATCH ]]
	3794	then
[505]	3795	if [[ "$cond2" = fujitsu ]]
	3796	then
	3797	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
	3798	elif [[ "cond2" = pgi ]]
	3799	then
	3800	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
	3801	else
	3802	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
	3803	fi
[440]	3804	else
[505]	3805	if [[ "$cond2" = "" ]]
	3806	then
	3807	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
	3808	else
	3809	mpirun -np $numprocs ./a.out $ROPTS
	3810	fi
[440]	3811	fi
	3812	set +xv
[1]	3813	elif [[ $host = lctit ]]
	3814	then
[678]	3815	export OMP_NUM_THREADS=$threads_per_task
	3816	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3817	if [[ "$threads_per_task" != 1 ]]
	3818	then
	3819	export MV2_ENABLE_AFFINITY=0
	3820	fi
	3821	echo "----- PBS_NODEFILE content:"
	3822	cat $PBS_NODEFILE
	3823	echo "-----"
	3824	(( ii = $numprocs / $threads_per_task ))
	3825	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
	3826	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
[1]	3827	else
[102]	3828	mpprun -n $numprocs a.out $ROPTS
[1]	3829	fi
	3830	[[ $? != 0 ]] && execution_error=true
	3831
	3832
	3833	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3834	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3835	then
	3836	apprentice
	3837	fi
	3838	else
[102]	3839	a.out $ROPTS
[1]	3840	fi
	3841	fi
	3842	if [[ $? != 0 \|\| $execution_error = true ]]
	3843	then
	3844
	3845	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3846	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3847	printf "\n +++ runtime error occured"
	3848	locat=execution
	3849	exit
	3850	else
[102]	3851	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3852	printf "\n$striche\n *** execution finished \n"
[260]	3853
[261]	3854	# Stop the dvr streaming server and process the dvr output in order
	3855	# to create dvrs- and html-files containing all streams
[260]	3856	if [[ "$dvrserver_id" != "" ]]
	3857	then
	3858	kill $dvrserver_id
	3859	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3860
[262]	3861	# If there is a directory, data have been output by the
	3862	# streaming server. Otherwise, user has chosen dvrp_output=local
	3863	if [[ -d DATA_DVR ]]
	3864	then
[261]	3865
[262]	3866	# Add the current dvr configuration file to the dvr output
	3867	# directory
	3868	cp .dvrserver.config DATA_DVR
	3869
	3870	# Process the dvr output (option -s for also generating
	3871	# sequence mode data)
	3872	process_dvr_output -d DATA_DVR -f $fname -s
	3873
	3874	else
	3875
	3876	# Process the local output
	3877	process_dvr_output -l -d DATA_DVR -f $fname
	3878
	3879	fi
	3880
	3881	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3882	then
	3883
	3884	# Process dvr output generated in local mode (dvrp_output=local)
	3885	process_dvr_output -l -d DATA_DVR -f $fname
	3886
[260]	3887	fi
[1]	3888	fi
	3889
	3890
	3891
[503]	3892	# Call of combine_plot_fields in order to merge single files written
	3893	# by each PE into one file.
[920]	3894	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
	3895	then
	3896	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
	3897	printf "\n 2d- and/or 3d-data may be incomplete!"
	3898	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
	3899	elif [[ "$combine_plot_fields" == true ]]
	3900	then
	3901	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
	3902	combine_plot_fields${block}.x
	3903	else
	3904	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
	3905	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
	3906	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
	3907	fi
[503]	3908
	3909
	3910
[1]	3911	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3912	(( i = 0 ))
	3913	while (( i < ioc ))
	3914	do
	3915	(( i = i + 1 ))
	3916	if (( i == 1 ))
	3917	then
	3918	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3919	fi
	3920	printf "\n >>> ${out_command[$i]}"
	3921	eval ${out_command[$i]}
	3922	if (( i == ioc ))
	3923	then
	3924	printf "\n$striche\n"
	3925	fi
	3926	done
	3927
	3928
	3929	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3930	if [[ $do_trace = true ]]
	3931	then
	3932	printf "\n\n"
	3933	ls -al
	3934	fi
	3935
	3936
	3937
	3938	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3939	(( i = 0 ))
	3940	while (( i < iout ))
	3941	do
	3942	(( i = i + 1 ))
	3943	if (( i == 1 ))
	3944	then
	3945	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3946	fi
	3947
	3948	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3949	files_for_pes=false; filetyp=file
	3950	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3951	then
	3952	files_for_pes=true; filetyp=directory
	3953	actionout[$i]=""
	3954	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3955	then
	3956	actionout[$i]=""
	3957	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3958	then
	3959	files_for_pes=true; filetyp=directory
	3960	actionout[$i]="ar"
	3961	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3962	then
	3963	actionout[$i]="ar"
	3964	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3965	then
	3966	files_for_pes=true; filetyp=directory
	3967	actionout[$i]="fl"
	3968	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3969	then
	3970	actionout[$i]="fl"
	3971	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3972	then
	3973	files_for_pes=true; filetyp=directory
	3974	actionout[$i]="tr"
	3975	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3976	then
	3977	actionout[$i]="tr"
	3978	fi
	3979
	3980	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3981	then
	3982	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3983	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3984	then
	3985	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3986	else
	3987
	3988
	3989	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3990	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3991	# REMOTE-RECHNUNGEN
	3992	if [[ "${actionout[$i]}" = tr ]]
	3993	then
	3994	if [[ $localhost != $fromhost ]]
	3995	then
	3996	if [[ $files_for_pes = false ]]
	3997	then
	3998	cps=""
	3999	cst=""
	4000	else
	4001	cps=-c
	4002	cst="/"
	4003	fi
[622]	4004	if [[ $localhost = nech ]]
[1]	4005	then
	4006
	4007	# TRANSFER IN EIGENSTAENDIGEM JOB
	4008	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	4009	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	4010	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	4011	if [[ $files_for_pes = false ]]
	4012	then
	4013	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	4014	else
	4015	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	4016	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	4017	fi
	4018
	4019	echo "set -x" > transfer_${localout[$i]}
	4020	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	4021
	4022	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	4023	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	4024	printf "\n or higher cycle\n"
[1094]	4025	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
[82]	4026
[1]	4027	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	4028
	4029	if [[ $localhost = nech ]]
	4030	then
[1094]	4031	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
[1]	4032	else
	4033	if [[ "$LOGNAME" = b323013 ]]
	4034	then
[1094]	4035	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	4036	else
[1094]	4037	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	4038	fi
	4039	fi
	4040
	4041	else
	4042
	4043	# TRANSFER INNERHALB DIESES JOBS
	4044	transfer_failed=false
[82]	4045	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	4046	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
[1094]	4047	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
[82]	4048	[[ $? != 0 ]] && transfer_failed=true
[1]	4049
	4050	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	4051	# LOKALER MASCHINE ANLEGEN
	4052	if [[ $transfer_failed = true ]]
	4053	then
	4054	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	4055	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	4056
	4057	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	4058	# ANLEGEN.
	4059	eval local_catalog=${pathout[$i]}
	4060	if [[ ! -d $local_catalog ]]
	4061	then
	4062	printf " *** local directory does not exist. Trying to create:\n"
	4063	printf " $local_catalog \n"
	4064	mkdir -p $local_catalog
	4065	fi
	4066	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	4067	transfer_problems=true
	4068	fi
	4069	fi
	4070	else
	4071
	4072	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	4073	actionout[$i]=""
	4074	fi
	4075	fi
	4076
	4077
	4078	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	4079	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	4080	# REMOTE-RECHNUNGEN
	4081	if [[ "${actionout[$i]}" = tra ]]
	4082	then
	4083	if [[ $localhost != $fromhost ]]
	4084	then
[622]	4085	if [[ $localhost = ibmh \|\| $localhost = nech ]]
[1]	4086	then
	4087
	4088	# TRANSFER IN EIGENSTAENDIGEM JOB
	4089	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	4090	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	4091	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	4092	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	4093
	4094	echo "set -x" > transfer_${localout[$i]}
	4095	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	4096
	4097	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	4098	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	4099	printf "\n or higher cycle\n"
[1094]	4100	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
[82]	4101
[1]	4102	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	4103
	4104	if [[ $localhost = nech ]]
	4105	then
[1094]	4106	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
[1]	4107	else
	4108	if [[ $LOGNAME = b323013 ]]
	4109	then
[1094]	4110	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	4111	else
[1094]	4112	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	4113	fi
	4114	fi
	4115
	4116	else
	4117
	4118	# TRANSFER INNERHALB DIESES JOBS
	4119	transfer_failed=false
[82]	4120	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	4121	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
[1094]	4122	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
[82]	4123	[[ $? != 0 ]] && transfer_failed=true
[1]	4124
	4125	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	4126	# LOKALER MASCHINE ANLEGEN
	4127	if [[ $transfer_failed = true ]]
	4128	then
	4129	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	4130	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	4131
	4132	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	4133	# ANLEGEN
	4134	eval local_catalog=${pathout[$i]}
	4135	if [[ ! -d $local_catalog ]]
	4136	then
	4137	printf " *** local directory does not exist. Trying to create:\n"
	4138	printf " $local_catalog \n"
	4139	mkdir -p $local_catalog
	4140	fi
	4141
	4142	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	4143	transfer_problems=true
	4144	fi
	4145	fi
	4146	else
	4147
	4148	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	4149	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	4150	actionout[$i]=a
	4151	fi
	4152	fi
	4153
	4154
	4155	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	4156	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	4157	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	4158	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	4159	if [[ "${actionout[$i]}" = fl ]]
	4160	then
	4161	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4162	chmod g+rx $tmp_data_catalog
	4163	if [[ $files_for_pes = false ]]
	4164	then
	4165	printf "\n >>> OUTPUT: ${localout[$i]} to"
	4166	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	4167	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	4168	else
	4169	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	4170	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	4171	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	4172	cd ${localout[$i]}
	4173	for file in $(ls *)
	4174	do
	4175	ln -f $file $tmp_data_catalog/${frelout[$i]}
	4176	done
	4177	cd $TEMPDIR
[1]	4178	fi
	4179
	4180
	4181	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	4182	if [[ $store_on_archive_system = true ]]
	4183	then
	4184
	4185	if [[ $archive_system = asterix ]]
	4186	then
	4187	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4188	if [[ $files_for_pes = false ]]
	4189	then
	4190	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4191	else
	4192	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4193	fi
	4194	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4195	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	4196	echo "then" >> archive_${frelout[$i]}
	4197	echo " do_stageout=false" >> archive_${frelout[$i]}
	4198	echo "else" >> archive_${frelout[$i]}
	4199	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	4200	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	4201	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	4202	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	4203	if [[ $files_for_pes = false ]]
	4204	then
	4205	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	4206	else
	4207	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	4208	fi
	4209	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	4210	echo "fi" >> archive_${frelout[$i]}
	4211	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4212	elif [[ $archive_system = DMF ]]
	4213	then
	4214	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4215	if [[ $files_for_pes = false ]]
	4216	then
	4217	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	4218	locat=DMF
	4219	exit
	4220	else
	4221	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	4222	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	4223	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	4224	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	4225	fi
	4226	elif [[ $archive_system = tivoli ]]
	4227	then
	4228	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4229	if [[ $files_for_pes = false ]]
	4230	then
	4231	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4232	echo "set -x" >> archive_${frelout[$i]}
	4233	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4234	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4235	else
	4236
	4237	echo "set -x" >> archive_${frelout[$i]}
	4238	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	4239	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4240	cd $tmp_data_catalog
	4241	all_files=`ls -1 ${frelout[$i]}/*`
	4242	cd - > /dev/null
	4243	(( inode = 0 ))
	4244	(( tp1 = tasks_per_node + 1 ))
	4245	while (( inode < nodes ))
	4246	do
	4247	# echo "*** all_files = \"$all_files\" "
	4248	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	4249	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	4250	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	4251	# echo "*** files = \"$files\" "
	4252	# echo "*** all_files = \"$all_files\" "
[416]	4253	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4254	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4255	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
	4256	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[397]	4257	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	4258	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[1]	4259	(( inode = inode + 1 ))
	4260	done
	4261	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4262	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4263	fi
	4264	elif [[ $archive_system = ut ]]
	4265	then
	4266	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4267	if [[ $files_for_pes = false ]]
	4268	then
	4269	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4270	echo "set -x" >> archive_${frelout[$i]}
	4271	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4272	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4273	else
	4274
	4275	echo "set -x" >> archive_${frelout[$i]}
	4276	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	4277	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4278	cd $tmp_data_catalog
	4279	all_files=`ls -1 ${frelout[$i]}/*`
	4280	cd - > /dev/null
	4281	(( inode = 0 ))
	4282	(( tp1 = tasks_per_node + 1 ))
	4283	while (( inode < nodes ))
	4284	do
	4285	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	4286	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	4287	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4288	(( inode = inode + 1 ))
	4289	done
	4290	fi
	4291	elif [[ $archive_system = none ]]
	4292	then
	4293	printf " +++ archiving on $localhost not available!\n"
	4294	fi
	4295
	4296	if [[ $archive_system != none ]]
	4297	then
[399]	4298	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
[1]	4299	then
[1094]	4300	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
	4301	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
[1]	4302	elif [[ $localhost = nech ]]
	4303	then
[1094]	4304	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
[1]	4305	fi
	4306	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4307	fi
	4308	else
[399]	4309	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
[1]	4310	fi
	4311
	4312
	4313	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	4314	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	4315	if [[ $files_for_pes = false ]]
	4316	then
	4317	cat /dev/null > ${pathout[$i]}
	4318	else
	4319	mkdir -p ${pathout[$i]}
	4320	fi
	4321
	4322	fi
	4323
	4324
	4325	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	4326	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	4327	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	4328	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	4329	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	4330	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	4331	if [[ "${actionout[$i]}" = ar ]]
	4332	then
	4333	if [[ $files_for_pes = false ]]
	4334	then
	4335	printf "\n >>> OUTPUT: ${localout[$i]} to"
	4336	printf "\n ${pathout[$i]}"
	4337	printf "\n File will be copied to archive-system ($archive_system) !\n"
	4338	else
	4339	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	4340	printf "\n ${pathout[$i]}"
	4341	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	4342	fi
	4343	mv ${localout[$i]} ${frelout[$i]}
	4344
	4345	file_saved=false
	4346
	4347	if [[ $archive_system = asterix ]]
	4348	then
	4349	do_stageout=true
	4350	(( stageout_anz = 0 ))
	4351	while [[ $do_stageout = true ]]
	4352	do
	4353	if [[ $files_for_pes = false ]]
	4354	then
	4355	stageout ${frelout[$i]} > STAGE_OUTPUT
	4356	else
	4357	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	4358	fi
	4359	cat STAGE_OUTPUT
	4360	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	4361	then
	4362	file_saved=true
	4363	do_stageout=false
	4364	else
	4365	if [[ $files_for_pes = false ]]
	4366	then
	4367	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	4368	else
	4369	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	4370	fi
	4371	(( stageout_anz = stageout_anz + 1 ))
	4372	if (( stageout_anz == 10 ))
	4373	then
	4374	printf "\n +++ stoped after 10 unsuccessful tries!"
	4375	archive_save=false
	4376	do_stageout=false
	4377	else
	4378	printf "\n *** new try to store on archive after 15 min:"
	4379	sleep 900
	4380	fi
	4381	fi
	4382	done
	4383	elif [[ $archive_system = DMF ]]
	4384	then
	4385	if [[ $files_for_pes = false ]]
	4386	then
	4387	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	4388	locat=DMF
	4389	exit
	4390	else
	4391	rm -rf $ARCHIVE/${frelout[$i]}
	4392	cp -r ${frelout[$i]} $ARCHIVE
	4393	fi
	4394	file_saved=true
	4395	elif [[ $archive_system = tivoli ]]
	4396	then
	4397	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4398	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4399	# GELEGT WERDEN
	4400	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4401	chmod g+rx $tmp_data_catalog
	4402	if [[ $files_for_pes = false ]]
	4403	then
	4404	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4405	else
	4406	mkdir $tmp_data_catalog/${frelout[$i]}
	4407	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4408	fi
	4409
	4410	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4411	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4412	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4413	if [[ $files_for_pes = false ]]
	4414	then
	4415	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4416	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4417	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4418	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4419	else
	4420	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4421	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4422	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4423	fi
	4424
[1094]	4425	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
[1]	4426	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4427	file_saved=true
	4428
	4429	elif [[ $archive_system = ut ]]
	4430	then
	4431	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4432	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4433	# GELEGT WERDEN
	4434	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4435	chmod g+rx $tmp_data_catalog
	4436	if [[ $files_for_pes = false ]]
	4437	then
	4438	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4439	else
	4440	mkdir $tmp_data_catalog/${frelout[$i]}
	4441	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4442	fi
	4443
	4444	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4445	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4446	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4447	if [[ $files_for_pes = false ]]
	4448	then
	4449	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4450	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4451	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4452	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4453	else
	4454	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4455	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4456	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4457	fi
	4458
[1094]	4459	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
[1]	4460	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4461	file_saved=true
	4462
	4463	else
	4464	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	4465	archive_save=false
	4466	fi
	4467	if [[ $file_saved = true ]]
	4468	then
	4469	if [[ $files_for_pes = false ]]
	4470	then
	4471	cat /dev/null > ${pathout[$i]}
	4472	else
	4473	mkdir -p ${pathout[$i]}
	4474	fi
	4475	fi
	4476	fi
	4477
	4478	# APPEND AUF LOKALER MASCHINE
	4479	if [[ "${actionout[$i]}" = "a" ]]
	4480	then
[741]	4481	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
	4482	then
	4483	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
	4484	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
	4485	else
	4486	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	4487	cat ${localout[$i]} >> ${pathout[$i]}
	4488	fi
[1]	4489	fi
	4490
	4491	# KOPIEREN AUF LOKALER MASCHINE
	4492	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	4493	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	4494	then
	4495
	4496	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	4497	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	4498	then
	4499	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	4500	if [[ $link_local_output = true ]]
	4501	then
	4502	printf " using ln -f\n"
	4503	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4504	fi
	4505	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4506	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	4507	then
	4508	if [[ $link_local_output = true ]]
	4509	then
	4510	printf " ln failed, using cp...\n"
	4511	fi
	4512	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4513	fi
[1]	4514	else
	4515	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	4516	if [[ $link_local_output = true ]]
	4517	then
	4518	printf " using ln -f\n"
	4519	ln -f ${localout[$i]} ${pathout[$i]}
	4520	fi
	4521	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4522	if [[ ! -f "${pathout[$i]}" ]]
	4523	then
	4524	if [[ $link_local_output = true ]]
	4525	then
	4526	printf " ln failed, using cp...\n"
	4527	fi
	4528	cp ${localout[$i]} ${pathout[$i]}
	4529	fi
[1]	4530	fi
	4531
	4532	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	4533	then
	4534
	4535	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	4536	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	4537	# WIRD DANN KOPIERT
	4538	# PER MOVE UMBENANNT WERDEN
	4539	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	4540	if [[ $link_local_output = true ]]
	4541	then
	4542	printf " using ln -f\n"
	4543	mkdir ${pathout[$i]}
	4544	cd ${localout[$i]}
	4545	for file in $(ls *)
	4546	do
	4547	ln -f $file ${pathout[$i]}
	4548	done
	4549	cd $TEMPDIR
	4550	fi
	4551	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	4552	if [[ ! -f "${pathout[$i]}/_0000" ]]
	4553	then
	4554	if [[ $link_local_output = true ]]
	4555	then
	4556	printf " ln failed for .../_0000, using cp...\n"
	4557	fi
	4558	cp -r ${localout[$i]} ${pathout[$i]}
	4559	fi
[1]	4560
	4561	fi
	4562	fi
	4563	done
	4564	if (( i != 0 ))
	4565	then
	4566	if [[ $transfer_problems = true ]]
	4567	then
	4568	printf "\n$striche\n *** OUTPUT-files saved"
	4569	printf "\n +++ WARNING: some data transfers failed! \n"
	4570	else
	4571	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4572	fi
	4573	fi
	4574
	4575
	4576	# EVENTUELL FOLGEJOB STARTEN
	4577	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4578	if [[ -f CONTINUE_RUN ]]
	4579	then
	4580
	4581	if [[ $archive_save = true ]]
	4582	then
	4583
	4584	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4585	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4586	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4587	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4588	# HANDEN
	4589	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4590	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4591	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4592	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4593	then
	4594	mc=`echo $mc \| sed 's/#/f/g'`
	4595	fi
	4596
	4597
	4598	# JOB STARTEN
	4599	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4600	echo " $mc"
	4601	printf "\n$striche\n"
	4602	if [[ $localhost != $fromhost ]]
	4603	then
	4604
[1099]	4605	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
[1]	4606	then
	4607	echo "*** ssh will be used to initiate restart-runs!"
	4608	echo " return_addres=\"$return_addres\" "
	4609	echo " return_username=\"$return_username\" "
[635]	4610	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
[1]	4611	then
[1190]	4612	if [[ $localhost = ibmh ]]
	4613	then
	4614	ssh $SSH_PORTOPT $usern@136.172.40.15 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
	4615	else
	4616	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4617	fi
[1]	4618	else
[693]	4619	if [[ $localhost = ibmkisti ]]
	4620	then
[1094]	4621	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
[693]	4622	else
[1094]	4623	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[693]	4624	fi
[1]	4625	fi
	4626	else
	4627	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4628	locat=restart; exit
	4629	fi
	4630
	4631	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4632	# DER AKTUELLE JOB ENDET
[399]	4633	if [[ $queue = special1q ]]
	4634	then
	4635	sleep 120
	4636	else
	4637	sleep 30
	4638	fi
[1]	4639
	4640	else
	4641
	4642	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4643	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4644	cd $LOCAL_PWD
[108]	4645	if [[ $localhost = lcfimm ]]
	4646	then
[1094]	4647	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1103]	4648	elif [[ $localhost = lckyuh ]]
	4649	then
	4650	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
	4651	printf "\n please restart job manually using command:\n"
	4652	printf "\n \"$mc\" "
[108]	4653	else
	4654	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4655	fi
[1]	4656	cd - > /dev/null
	4657	fi
[1103]	4658	if [[ $localhost = lckyuh ]]
	4659	then
	4660	printf "\n$striche\n *** restart-run to be initiated manually\n"
	4661	else
	4662	printf "\n$striche\n *** restart-run initiated \n"
	4663	fi
[1]	4664
	4665
	4666	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4667	# GEHOLT WORDEN SIND, LOESCHEN
	4668	(( i = 0 ))
	4669	while (( i < iin ))
	4670	do
	4671	(( i = i + 1 ))
	4672	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4673	then
	4674	rm -r $tmp_data_catalog/${frelin[$i]}
	4675	fi
	4676	done
	4677
	4678	else
	4679
	4680	printf "\n +++ no restart-run possible, since errors occured"
	4681	printf "\n during the archive process"
	4682	fi
	4683
	4684	fi
	4685
	4686
	4687
	4688	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4689	if [[ "$email_notification" != "none" ]]
[1]	4690	then
	4691
	4692	if [[ $localhost != $fromhost ]]
	4693	then
	4694	if [[ -f CONTINUE_RUN ]]
	4695	then
	4696	echo "PALM restart run necessary" > email_text
	4697	echo "description header of actual run:" >> email_text
	4698	cat CONTINUE_RUN >> email_text
	4699	echo "mrun-command to restart:" >> email_text
	4700	echo "$mc" >> email_text
	4701	else
	4702	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4703	fi
	4704	mail $email_notification < email_text
	4705	printf "\n *** email notification sent to \"$email_notification\" "
	4706	fi
	4707	fi
	4708
	4709
	4710
	4711	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4712	cd $HOME
	4713	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4714
	4715	else
	4716
	4717
	4718	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4719	# CHENDE AKTIONEN DURCHGEFUEHRT
	4720
	4721	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[821]	4722	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	4723	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4724	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4725	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4726	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4727	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4728	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4729	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4730	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4731	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4732	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4733	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4734	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4735	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4736	if [[ $use_openmp = true ]]
	4737	then
[622]	4738	mrun_com=${mrun_com}" -O $threads_per_task"
[1]	4739	fi
[759]	4740	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
[397]	4741	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
[1]	4742	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4743	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4744	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4745	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4746	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4747	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[920]	4748	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
	4749	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
[759]	4750	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
[1]	4751	if [[ $do_remote = true ]]
	4752	then
	4753	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4754	fi
	4755
	4756
[1199]	4757	# create executable for batch job
	4758	if [[ $create_executable_for_batch = true && $restart_run != true ]]
	4759	then
	4760
	4761	printf "\n *** creating the executable for batch job\n"
	4762
	4763	# method only works for batch jobs on local hosts
	4764	if [[ $host != $localhost ]]
	4765	then
	4766	printf "\n +++ creation of executables is only allowed for batch jobs on local hosts."
	4767	printf "\n Please set create_executable_for_batch = false in the config-file.\n"
	4768	locat=create_executable; exit
	4769	fi
	4770
	4771	mkdir $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
	4772	cd $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
	4773
	4774	cp $make_depository .
	4775	tar -xf $make_depository > /dev/null 2>&1
	4776	cp ../* . > /dev/null 2>&1
	4777
	4778	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	4779
	4780	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	4781	then
	4782	printf "\n +++ error occured while compiling or linking"
	4783	locat=compile
	4784	exit
	4785	fi
	4786
	4787	mv a.out ..
	4788	cd - > /dev/null 2>&1
	4789	rm -rf $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
	4790
	4791	printf " *** executable created in \"$working_directory/SOURCES_FOR_RUN_${fname}\"\n "
	4792
	4793	fi
	4794
	4795
[1]	4796	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4797	jobfile=jobfile.$RANDOM
	4798
	4799
	4800	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4801	echo "mkdir $TEMPDIR" >> $jobfile
	4802	echo "cd $TEMPDIR" >> $jobfile
	4803
	4804
	4805	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4806	if [[ $do_trace = true ]]
	4807	then
	4808	echo "set -x" >> $jobfile
	4809	else
	4810	echo "set +vx" >> $jobfile
	4811	fi
	4812
	4813
[1043]	4814	# initialize the environment and load modules
	4815	if [[ "$init_cmds" != "" ]]
	4816	then
	4817	echo "$init_cmds" >> $jobfile
	4818	fi
	4819	if [[ "$module_calls" != "" ]]
	4820	then
	4821	echo "$module_calls" >> $jobfile
	4822	fi
	4823
	4824
[191]	4825	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4826	# DATEI FUER DEN JOB
[1199]	4827	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti \|\| $host = lccrayf ]]
[1]	4828	then
	4829
[191]	4830	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4831	# KOPIEREN
	4832	if [[ $restart_run != true ]]
	4833	then
	4834	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4835	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4836	fi
[1]	4837
[191]	4838	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[693]	4839	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
[193]	4840	echo "set -x" >> $jobfile
[693]	4841	if [[ $host = $localhost ]]
	4842	then
[1199]	4843
	4844	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
	4845	# FILES ON CRAY XC30 SYSTEMS (CSC HELSINKI), rsync IS USED INSTEAD
	4846	echo "rsync -ae -t $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4847
[693]	4848	else
	4849	if [[ $host != ibmkisti ]]
	4850	then
[1094]	4851	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
[693]	4852	else
	4853	# on KISTI's IBM firewall is only opened on interactive node
	4854	echo "localdir=\`pwd\`" >> $jobfile
[1094]	4855	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
[693]	4856	fi
	4857	fi
[193]	4858	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4859
[193]	4860	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4861	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4862	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4863	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
[1199]	4864	echo "chmod u+rwx $mrun_script_name" >> $jobfile
[193]	4865	echo "execute_mrun=true" >> $jobfile
	4866	echo " " >> $jobfile
	4867
[191]	4868	else
	4869
	4870	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4871	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4872	if [[ $do_compile = true ]]
	4873	then
	4874
	4875	source_catalog=SOURCES_FOR_RUN_$fname
	4876
	4877	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4878	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4879	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4880	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4881	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4882	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4883
	4884	for filename in $source_list
	4885	do
	4886	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4887	echo "cat > $filename << \"%END%\"" >> $jobfile
	4888	cat $source_catalog/$filename >> $jobfile
	4889	echo " " >> $jobfile
	4890	echo "%END%" >> $jobfile
	4891	echo " " >> $jobfile
	4892	done
	4893
[1]	4894	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4895	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4896	cat $source_catalog/Makefile >> $jobfile
[1]	4897	echo " " >> $jobfile
	4898	echo "%END%" >> $jobfile
	4899	echo " " >> $jobfile
	4900
[191]	4901	echo "cd - > /dev/null" >> $jobfile
[1]	4902
[191]	4903	fi
[1]	4904
	4905
[191]	4906	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4907	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[1099]	4908	# Lines with #$ coming from the svn keyword substitution are
	4909	# removed from the config file in order to avoid problems
	4910	# with the SGE batch system
[191]	4911	echo "cat > $config_file << \"%END%\"" >> $jobfile
[1101]	4912	if [[ $host = lckyuh ]]
	4913	then
	4914	# no cross compiler on compute node
	4915	sed 's/frtpx/frt/g' $config_file >> $jobfile
	4916	else
	4917	sed 's/#$.*//g' $config_file >> $jobfile
	4918	fi
[191]	4919	echo "%END%" >> $jobfile
	4920	echo " " >> $jobfile
[1]	4921
	4922
[191]	4923	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4924	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[1101]	4925	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
[1103]	4926	if [[ $host = lckyuh ]]
	4927	then
	4928	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
	4929	else
	4930	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4931	fi
[1101]	4932	echo "%END%" >> $jobfile
[191]	4933	echo "chmod u+x $mrun_script_name" >> $jobfile
	4934	echo "execute_mrun=true" >> $jobfile
	4935	echo " " >> $jobfile
[1]	4936
	4937	fi
	4938
[191]	4939
[1]	4940	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4941	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4942	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4943	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4944	if [[ $do_remote = true ]]
	4945	then
	4946	(( i = 0 ))
	4947	while (( i < iin ))
	4948	do
	4949	(( i = i + 1 ))
	4950	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4951	if [[ "${transin[$i]}" = job ]]
	4952	then
	4953	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4954	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4955	echo " " >> $jobfile
	4956	echo "%END%" >> $jobfile
	4957	else
[1094]	4958	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4959	fi
	4960
	4961	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4962	echo "if [[ \$? = 1 ]]" >> $jobfile
	4963	echo "then" >> $jobfile
	4964	echo " echo \" \" " >> $jobfile
	4965	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4966	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4967	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4968	echo " execute_mrun=false" >> $jobfile
	4969	echo "fi" >> $jobfile
	4970	done
	4971	fi
	4972
	4973	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4974	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4975	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4976	echo "export LOCAL_PWD" >> $jobfile
	4977
	4978	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4979	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4980	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4981
[66]	4982	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4983	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4984	then
	4985	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
[1099]	4986	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
	4987	then
	4988	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
	4989	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
[66]	4990	fi
[1]	4991
[693]	4992	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
[1101]	4993	echo "set -x" >> $jobfile
	4994	echo "queue=$queue" >> $jobfile
[1]	4995	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
[1101]	4996	echo 'ls -al; echo `pwd`' >> $jobfile
	4997	echo "cd \$HOME" >> $jobfile
	4998	echo "rm -rf $TEMPDIR" >> $jobfile
[1]	4999
	5000
	5001
	5002
	5003	# JOB PER SUBJOB STARTEN
	5004	if [[ $silent = false ]]
	5005	then
	5006	printf "\n "
	5007	else
	5008	printf "\n\n"
	5009	fi
	5010
[1094]	5011	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
[1]	5012	rm -rf $jobfile
	5013
	5014
	5015	fi # ENDE REMOTE-TEIL
	5016
	5017
	5018
	5019	# ENDE DER PROZEDUR

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