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source: palm/trunk/SCRIPTS/mrun @ 1200

Last change on this file since 1200 was 1200, checked in by raasch, 11 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1200 2013-07-05 15:29:59Z raasch $
29	#
30	# 1199 2013-07-05 14:52:22Z raasch
31	# adjustments for CSC Helsinki (lccrayf),
32	# executables for batch jobs can be created in advance, in order to avoid calling
33	# the compiler within the batch job (only works if batch jobs are submitted on
34	# local host)
35	#
36	# 1190 2013-06-25 09:39:21Z heinze
37	# enable use of automatic restarts for ibmh
38	# use of cluster/express queue enabled (ibmh)
39	#
40	# 1124 2013-04-09 15:46:52Z raasch
41	# variable "memory" is exported via typeset option -x, because otherwise an unknown
42	# side effect may lead to data loss while getopts is reading the script-option arguments
43	#
44	# 1122 2013-04-09 08:37:16Z heinze
45	# Bugfix: change type of variable last_char
46	#
47	# 1119 2013-04-05 15:11:19Z raasch
48	# Bugfix for setting -T option for subjob
49	#
50	# 1108 2013-03-05 07:03:32Z raasch
51	# bugfix for coupled runs on lckyut/lckyuh
52	#
53	# 1106 2013-03-04 05:31:38Z raasch
54	# --stdin argument for mpiexec on lckyuh
55	# -y and -Y settings output to header
56	#
57	# 1103 2013-02-20 02:15:53Z raasch
58	# default script runs again under ksh, because of unsolved problems with read
59	# from stdin: when bash script is called from a ksh, message "read error: 0:
60	# Resource temporarily unavailable" appears and script does not stop,
61	# further bash compatibility adjustments,
62	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
63	# on lckyuh, but mrun does not terminate and issues a warning instead
64	#
65	# 1101 2013-02-17 10:20:21Z raasch
66	# script now running under bash instead of ksh, which required small adjustments
67	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
68	# read from stdin),
69	# cross compilername on lckyuh compute nodes replaced by real compiler name
70	#
71	# 1099 2013-02-10 01:47:43Z raasch
72	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
73	# and for Forwind cluster (lcflow)
74	# small further adjustments for lckyut
75	#
76	# 1094 2013-02-03 01:52:12Z raasch
77	# explicit ssh/scp port can be set in config file with environment variable
78	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
79	# decalpha parts (yonsei) removed
80	#
81	# 2013-02-02 07:06:13Z raasch
82	# adjustments for Kyushu-University computing center (lckyut - tatara)
83	#
84	# 1083 2013-01-04 10:22:09Z maronga
85	# bugfix in parameter file check (read %cpp_options was missing)
86	#
87	# 1069 2012-11-28 16:18:43Z maronga
88	# bugfix: coupling mode was always set to mpi2, typos removed
89	#
90	# 1058 2012-11-21 07:00:35Z raasch
91	# Intel inspector (inspxe) is given the number of PEs instead of the number of
92	# nodes
93	#
94	# 1046 2012-11-09 14:38:45Z maronga
95	# code put under GPL (PALM 3.9)
96	#
97	# 21/03/94 - Siggi - first version finished
98	# 03/03/94 - Siggi - script development started
99	#
100	#--------------------------------------------------------------------------------#
101	# mrun - script for running PALM jobs
102	#--------------------------------------------------------------------------------#
103
104
105
106	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
107
108	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
109	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
110	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
111
112	AddFilenames=""
113	additional_conditions=""
114	add_source_path=""
115	afname=""
116	archive_save=true
117	archive_system=none
118	check_namelist_files=true
119	combine_plot_fields=true
120	compiler_name=""
121	cond1=""
122	cond2=""
123	config_file=.mrun.config
124	coupled_dist=""
125	coupled_mode="mpi1"
126	cpp_opts=""
127	cpp_options=""
128	cpumax=0
129	cpurest=0
130	create_executable_for_batch=false
131	delete_temporary_catalog=true
132	do_batch=false
133	do_compile=true
134	do_remote=false
135	do_stagein=true
136	do_stageout=true
137	do_trace=false
138	email_notification="none"
139	exclude=""
140	executable=""
141	execution_error=false
142	fimm=false
143	fname=test
144	fromhost=""
145	global_revision=""
146	group_number=none
147	host=""
148	host_file=""
149	hp=""
150	ignore_archive_error=false
151	input_list=""
152	interpreted_config_file=""
153	job_catalog="~/job_queue"
154	job_on_file=""
155	keep_data_from_previous_run=false
156	link_local_input=false
157	link_local_output=false
158	localhost_realname=$(hostname)
159	local_compile=false
160	local_dvrserver_running=.FALSE.
161	locat=normal
162	mainprog=""
163	makefile=""
164	max_par_io_str=""
165	mc=$0
166	while [[ $(echo $mc \| grep -c "/") != 0 ]]
167	do
168	mc=`echo $mc \| cut -f2- -d"/"`
169	done
170	module_calls=""
171	mrun_script_name=$mc
172	netcdf_inc=""
173	netcdf_lib=""
174	netcdf_support=false
175	node_usage=default
176	numprocs=""
177	numprocs_atmos=0
178	numprocs_ocean=0
179	OOPT=""
180	openmp=false
181	output_list=""
182	package_list=""
183	punkte="..........................................................."
184	queue=none
185	read_from_config=""
186	restart_run=false
187	if [[ `hostname` = rte10 ]]
188	then
189	return_addres=133.5.185.60
190	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
191	elif [[ `hostname` = climate0 ]]
192	then
193	return_addres=165.132.26.68
194	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
195	elif [[ `hostname` = urban00 ]]
196	then
197	return_addres=147.46.30.151
198	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
199	else
200	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
201	fi
202	return_password=""
203	return_username=$LOGNAME
204	remotecall=false
205	remote_username=""
206	run_coupled_model=false
207	run_mode=""
208	scirocco=false
209	store_on_archive_system=false
210	striche=" ----------------------------------------------------------------------------"
211	silent=false
212	source_list=""
213	source_path=SOURCE
214	tasks_per_node=""
215	threads_per_task=1
216	tmpcreate=false
217	tmp_data_catalog=""
218	transfer_problems=false
219	usern=$LOGNAME
220	use_openmp=false
221	version="MRUN 2.0 Rev$Rev: 1200 $"
222	working_directory=`pwd`
223	TOPT=""
224	XOPT=""
225	zeit=$( date \| cut -c 12-19 )
226
227	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
228	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
229	# effect may cause data loss when getopts is reading the
230	# script-option arguments
231	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes sekunden tp1
232
233
234
235
236	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
237	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
238
239	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
240	# EXPORTIERT WERDEN
241	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
242	export group_number input_list numprocs output_list queue run_mode
243
244
245
246	# FEHLERBEHANDLUNG
247	# BEI EXIT:
248	trap 'rm -rf $working_directory/tmp_mrun
249	if [[ $locat != localhost ]]
250	then
251	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
252	# then
253	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
254	#MRUN-calls on $localhost
255	#
256	#date and time user localhost remotehost termination mrun-command
257	#--------------------------------------------------------------------------------------------------------------------
258	#%STATEND%
259	# chmod 666 ${mrun_path}/statistik/mrun_statistik
260	# fi
261	#
262	# # EINTRAG IN DIE STATISTIK-DATEI
263	# string1=`date` #-L35
264	# string2=$usern #-L12
265	# string3=$localhost_realname #-L12
266	# string4=$host #-L12
267	# string5=$locat #-L12
268	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
269	# then
270	# if [[ $do_batch = true ]]
271	# then
272	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
273	# else
274	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
275	# fi
276	# fi
277	echo " " > /dev/null
278	fi
279
280	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
281	then
282
283	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
284	(( i = 0 ))
285	while (( i < iec ))
286	do
287	(( i = i + 1 ))
288	printf "\n *** Execution of ERROR-command:\n"
289	printf " >>> ${err_command[$i]}\n"
290	eval ${err_command[$i]}
291	done
292	if [[ -n $interpreted_config_file ]]
293	then
294	rm -rf $interpreted_config_file
295	fi
296	if [[ -n .mrun_environment ]]
297	then
298	rm -rf .mrun_environment
299	fi
300	if [[ $tmpcreate = true ]]
301	then
302	printf "\n *** Contents of \"$TEMPDIR\":\n"
303	ls -al; cd
304	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
305	fi
306	if [[ "$dvrserver_id" != "" ]]
307	then
308	echo "+++ killing dvrserver_id=$dvrserver_id"
309	kill $dvrserver_id
310	fi
311	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
312	then
313	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
314	fi
315	printf "\n\n+++ MRUN killed \n\n"
316	elif [[ $locat != control_c ]]
317	then
318	printf "\n\n --> all actions finished\n\n"
319	printf " Bye, bye $usern !!\n\n"
320	fi' exit
321
322
323	# BEI TERMINAL-BREAK:
324	trap 'rm -rf $working_directory/tmp_mrun
325	rm -rf $working_directory/tmp_check_namelist_files
326	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
327	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
328	then
329	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
330	fi
331	if [[ "$dvrserver_id" != "" ]]
332	then
333	echo "+++ killing dvrserver_id=$dvrserver_id"
334	kill $dvrserver_id
335	fi
336	printf "\n+++ MRUN killed by \"^C\" \n\n"
337	locat=control_c
338	exit
339	' 2
340
341
342	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
343	# BEEN SET
344	if [[ "$PALM_BIN" = "" ]]
345	then
346	printf "\n +++ environment variable PALM_BIN has not been set"
347	printf "\n please set it to the directory where the PALM scripts are located"
348	locat=palm_bin; exit
349	fi
350	export PATH=$PALM_BIN:$PATH
351
352
353
354	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
355	# FUER FOLGEJOBS BENOETIGT WIRD
356	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
357	do
358	case $option in
359	(a) afname=$OPTARG;;
360	(A) store_on_archive_system=true; mc="$mc -A";;
361	(b) do_batch=true; mc="$mc -b";;
362	(B) delete_temporary_catalog=false; mc="$mc -B";;
363	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
364	(C) restart_run=true; mc="$mc -C";;
365	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
366	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
367	(F) job_on_file="-D"; mc="$mc -F";;
368	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
369	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
370	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
371	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
372	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
373	(I) ignore_archive_error=true; mc="$mc -I";;
374	(k) keep_data_from_previous_run=true; mc="$mc -k";;
375	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
376	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
377	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
378	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
379	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
380	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
381	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
382	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
383	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
384	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
385	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
386	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
387	(S) read_from_config=false; mc="$mc -S";;
388	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
389	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
390	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
391	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
392	(v) silent=true; mc="$mc -v";;
393	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
394	(x) do_trace=true;set -x; mc="$mc -x";;
395	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
396	(y) ocean_file_appendix=true; mc="$mc -y";;
397	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
398	(z) check_namelist_files=false; mc="$mc -z";;
399	(Z) combine_plot_fields=false; mc="$mc -Z";;
400	(\?) printf "\n +++ unknown option $OPTARG \n"
401	printf "\n --> type \"$0 ?\" for available options \n"
402	locat=parameter;exit;;
403	esac
404	done
405
406
407	# EVTL. POSITIONSPARAMETER EINLESEN
408	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
409	(( to_shift = $OPTIND - 1 ))
410	shift $to_shift
411
412	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
413	if [[ "$1" = "?" ]]
414	then
415	(printf "\n *** mrun can be called as follows:\n"
416	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
417	printf "\n Description of available options:\n"
418	printf "\n Option Description Default-Value"
419	printf "\n -a base name of input files equiv. -d"
420	printf "\n -A archiving when using file-attribute fl"
421	printf "\n -b batch-job on local machine ---"
422	printf "\n -B do not delete temporary directory at end ---"
423	printf "\n -c configuration file .mrun.config"
424	printf "\n -d base name of files attached to program test"
425	printf "\n -D preprocessor(cpp)-directives \"\" "
426	printf "\n -F create remote job file only ---"
427	printf "\n -h execution host $localhost_realname"
428	printf "\n -i INPUT control list \"\" "
429	printf "\n -I archiving errors of previous batch-jobs"
430	printf "\n will be ignored"
431	printf "\n -k keep data from previous run"
432	printf "\n -K additional conditions for controling"
433	printf "\n usage of conditional code and"
434	printf "\n env-variables in configuration file \"\" "
435	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
436	printf "\n -M Makefile name Makefile"
437	printf "\n -n node usage (shared/not_shared) depending on -h"
438	printf "\n -o OUTPUT control list \"\" "
439	printf "\n -O use OpenMP ---"
440	printf "\n -p software package list \"\" "
441	printf "\n -q queue \"$queue\" "
442	printf "\n -r run control list (combines -i -o) \"\" "
443	printf "\n -s filenames of routines to be compiled \"\" "
444	printf "\n must end with .f, .f90, .F, or .c !"
445	printf "\n use \"..\" for more than one file and wildcards"
446	printf "\n -s LM compiles all locally modified files"
447	printf "\n -S config file interpreted by shellscript ---"
448	printf "\n -t allowed cpu-time in seconds (batch) 0"
449	printf "\n -T tasks per node depending on -h"
450	printf "\n -u username on remote machine \"\" "
451	printf "\n -v no prompt for confirmation ---"
452	printf "\n -w maximum parallel io streams as given by -X"
453	printf "\n -x tracing of mrun for debug purposes ---"
454	printf "\n -X # of processors (on parallel machines) 1"
455	printf "\n -y add appendix \"_O\" to all local output"
456	printf "\n files (ocean precursor runs followed by"
457	printf "\n coupled atmosphere-ocean runs) ---"
458	printf "\n -Y run coupled model, \"#1 #2\" with"
459	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
460	printf "\n -z disable a priori parameter file check ---"
461	printf "\n -Z skip combine_plot_fields at the end of "
462	printf "\n the simulation ---"
463	printf "\n "
464	printf "\n Possible values of positional parameter <modus>:"
465	printf "\n \"?\" - this outline \n\n") \| more
466	exit
467	elif [[ "$1" != "" ]]
468	then
469	printf "\n +++ positional parameter $1 unknown \n"
470	locat=parameter; exit
471	fi
472
473
474
475	# KURZE STARTMELDUNG
476	printf "\n*** $version "
477	printf "\n will be executed. Please wait ..."
478
479
480
481	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
482	if [[ ! -f $config_file ]]
483	then
484	printf "\n\n +++ configuration file: "
485	printf "\n $config_file"
486	printf "\n does not exist"
487	locat=connect; exit
488	fi
489
490
491	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
492	line=""
493	grep "%host_identifier" $config_file > tmp_mrun
494	while read line
495	do
496	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
497	then
498	HOSTNAME=`echo $line \| cut -d" " -s -f2`
499	host_identifier=`echo $line \| cut -d" " -s -f3`
500	if [[ $localhost_realname = $HOSTNAME ]]
501	then
502	localhost=$host_identifier
503	break
504	fi
505	fi
506	done < tmp_mrun
507
508	if [[ "$localhost" = "" ]]
509	then
510	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
511	printf "\n for local host \"$localhost_realname\"."
512	printf "\n Please add line"
513	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
514	printf "\n to the configuration file."
515	locat=localhost; exit
516	fi
517
518
519	# HOSTSPEZIFISCHE VARIABLEN SETZEN
520	case $localhost_realname in
521	(r1\|r2\|h01\|b01) archive_system=tivoli;;
522	(cs*) archive_system=ut;;
523	(fimm.bccs.uib.no) fimm=true;;
524	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
525	(scirocco) scirocco=true;;
526	esac
527
528
529
530	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
531	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
532	[[ "$afname" = "" ]] && afname=$fname
533
534
535	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
536	if [[ "$run_mode" != "" ]]
537	then
538	input_list="$input_list $run_mode"
539	output_list="$output_list $run_mode"
540	fi
541
542
543	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
544	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
545	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
546	# STARTET)
547	if [[ "$fromhost" = "" ]]
548	then
549	fromhost=$localhost
550	fi
551
552
553	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
554	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
555	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
556	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
557	if [[ -n $host && "$host" != $localhost ]]
558	then
559	do_batch=true
560	do_remote=true
561	case $host in
562	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
563	(*) printf "\n"
564	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
565	printf "\n is not available"
566	locat=nqs; (( iec = 0 )); exit;;
567	esac
568	else
569	host=$localhost
570	fi
571
572
573	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
574	if [[ -n $additional_conditions ]]
575	then
576	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
577	cond1=`echo $additional_conditions \| cut -d" " -f1`
578	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
579	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
580	if [[ -n $dummy ]]
581	then
582	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
583	locat=options; exit
584	fi
585	block=_$cond1
586	[[ -n $cond2 ]] && block=${block}_$cond2
587	fi
588
589
590	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
591	if [[ $run_coupled_model = true ]]
592	then
593
594	if [[ -n $coupled_dist ]]
595	then
596
597	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
598	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
599
600	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
601	then
602
603	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
604	printf "\n PEs (total) : $numprocs"
605	printf "\n PEs (atmosphere): $numprocs_atmos"
606	printf "\n PEs (ocean) : $numprocs_ocean"
607	locat=coupling; exit
608
609	fi
610
611	else
612
613	(( numprocs_ocean = $numprocs / 2 ))
614	(( numprocs_atmos = $numprocs / 2 ))
615
616	fi
617	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
618
619	# GET coupled_mode FROM THE CONFIG FILE
620	line=""
621	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
622	while read line
623	do
624	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
625	then
626	coupled_mode="mpi2"
627	fi
628	done < tmp_mrun
629
630	fi
631
632
633	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
634	# ARCHIVIERUNG FEHLGESCHLAGEN IST
635	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
636	then
637	if [[ $ignore_archive_error = false ]]
638	then
639	printf "\n +++ data archiving of previous run failed"
640	printf "\n see directory \~/job_queue on remote machine"
641	locat=archive; exit
642	else
643	printf "\n +++ warning: data archiving in a previous run failed"
644	printf "\n MRUN continues, trying to get backup copy"
645	fi
646	fi
647
648
649	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
650	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
651	mrun_memory=$memory
652	mrun_group_number=$group_number
653	mrun_cpumax=$cpumax
654	mrun_numprocs=$numprocs
655
656
657	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
658	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
659	if [[ "$read_from_config" = false ]]
660	then
661
662	[[ $silent = false ]] && printf "\n Reading the configuration file... "
663	while read zeile
664	do
665	[[ $silent = false ]] && printf "."
666
667
668	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
669	# ERSETZEN
670	eval zeile=\"$zeile\"
671
672
673	# INTERPRETATION DER ZEILE
674	if [[ "$(echo $zeile)" = "" ]]
675	then
676	# LEERZEILE, KEINE AKTION
677	continue
678
679	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
680	then
681
682	# ZEILE IST KOMMENTARZEILE
683	true
684
685	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
686	then
687
688	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
689	zeile=$(echo $zeile \| cut -c2-)
690	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
691	var=`echo $zeile \| cut -d" " -f1`
692	value=`echo $zeile \| cut -d" " -s -f2`
693	for_host=`echo $zeile \| cut -d" " -s -f3`
694	for_cond1=`echo $zeile \| cut -d" " -s -f4`
695	for_cond2=`echo $zeile \| cut -d" " -s -f5`
696
697	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
698	then
699
700	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
701	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
702	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
703
704
705	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
706	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
707	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
708	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
709	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
710	# KONFIGURATIONSDATEI
711	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
712	then
713	eval $var=\$value
714
715	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
716	if [[ $do_trace = true ]]
717	then
718	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
719	fi
720	fi
721
722	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
723	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
724	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
725	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
726	if [[ $var = host ]]
727	then
728	if [[ -n $host && "$host" != $localhost ]]
729	then
730	do_batch=true
731	do_remote=true
732	case $host in
733	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
734	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
735	printf "\n is not available"
736	locat=nqs; exit;;
737	esac
738	else
739	host=$localhost
740	fi
741	fi
742
743	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
744	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
745	# DEN PROGRAMMEN BENOETIGT WERDEN
746	export $var
747	fi
748
749
750
751
752	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
753	then
754
755	# ZEILE DEFINIERT ERROR-KOMMANDO
756	(( iec = iec + 1 ))
757	zeile=$(echo $zeile \| cut -c4-)
758	err_command[$iec]="$zeile"
759
760	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
761	then
762
763	# ZEILE DEFINIERT INPUT-KOMMANDO
764	(( iic = iic + 1 ))
765	zeile=$(echo $zeile \| cut -c4-)
766	in_command[$iic]="$zeile"
767
768	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
769	then
770
771	# ZEILE DEFINIERT OUTPUT-KOMMANDO
772	(( ioc = ioc + 1 ))
773	zeile=$(echo $zeile \| cut -c4-)
774	out_command[$ioc]="$zeile"
775
776	else
777
778	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
779	# s2a: in/out - Feld
780	# s2b: loc - Feld (optional)
781	# s2c: tr/ar - Feld (optional)
782	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
783	s1=`echo $zeile \| cut -d" " -f1`
784	s2=`echo $zeile \| cut -d" " -s -f2`
785	s2a=$(echo $s2 \| cut -d":" -f1)
786	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
787	then
788	s2b=""
789	s2c=""
790	else
791	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
792	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
793	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
794	fi
795	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
796	s3=`echo $zeile \| cut -d" " -f3`
797	s4=`echo $zeile \| cut -d" " -s -f4`
798	s5=`echo $zeile \| cut -d" " -s -f5`
799	s6=`echo $zeile \| cut -d" " -s -f6`
800
801
802	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
803	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
804	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
805	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
806	# HANDEN SEIN MUSS (D.H. s2b = loc)
807	IFSALT="$IFS"; IFS="$IFS:"
808	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
809	then
810	found=false
811	for actual in $input_list
812	do
813	for formal in $s3
814	do
815	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
816	done
817	done
818	if [[ $found = true ]]
819	then
820	(( iin = iin + 1 ))
821	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
822	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
823	extin[$iin]=$s6
824	fi
825	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
826	then
827	found=false
828	for actual in $output_list
829	do
830	for formal in $s3
831	do
832	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
833	done
834	done
835	if [[ $found = true ]]
836	then
837	(( iout = iout + 1 ))
838	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
839	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
840	fi
841	elif [[ "$s2a" != in && "$s2a" != out ]]
842	then
843	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
844	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
845	locat=connect; exit
846	fi
847	IFS="$IFSALT"
848	fi
849	done < $config_file
850
851	else
852
853
854	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
855	[[ $silent = false ]] && printf "..."
856	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
857	export interpreted_config_file=.icf.$RANDOM
858
859
860
861	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
862	# VERFUEGUNG STELLEN
863	cat > .mrun_environment << %%END%%
864	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
865	config_file = '$config_file', do_remote = '$do_remote',
866	do_trace = '$do_trace', host = '$host',
867	input_list = '$input_list', icf = '$interpreted_config_file',
868	localhost = '$localhost', output_list = '$output_list' /
869
870	%%END%%
871
872	if [[ $localhost_realname = "sx-fep" ]]
873	then
874	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
875	else
876
877	if [[ "$host" != $localhost ]]
878	then
879
880	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
881	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
882	if [[ $? != 0 ]]
883	then
884	printf "\n\n +++ no interpret_config found"
885	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
886	locat=interpret_config; exit
887	fi
888	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
889	$interpret_config_executable
890
891	else
892
893	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
894	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
895	then
896	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
897	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
898	locat=interpret_config; exit
899	else
900	interpret_config${block}.x
901	fi
902
903	fi
904	fi
905	rm .mrun_environment
906
907
908	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
909	chmod u+x $interpreted_config_file
910	export PATH=$PATH:.
911	. $interpreted_config_file
912	rm $interpreted_config_file
913
914	fi
915
916
917	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
918	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
919	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
920	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
921	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
922	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
923	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
924
925
926	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
927	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
928	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
929	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
930	if [[ "$SOURCES_COMPLETE" = "" ]]
931	then
932
933	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
934	# VEREINBART WURDE
935	source_path=""
936	line=""
937	grep "%source_path" $config_file > tmp_mrun
938	while read line
939	do
940	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
941	then
942	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
943	then
944	global_source_path=`echo $line \| cut -d" " -f2`
945	fi
946	fi
947	done < tmp_mrun
948
949	line=""
950	found=false
951	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
952	while read line
953	do
954	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
955	then
956	if [[ $found = true ]]
957	then
958	printf "\n\n +++ more than one source path found in configuration file"
959	printf "\n for local host \"$localhost\" "
960	locat=source_path; exit
961	fi
962	source_path=`echo $line \| cut -d" " -f2`
963	found=true
964	fi
965	done < tmp_mrun
966	rm tmp_mrun
967
968	if [[ "$source_path" = "" ]]
969	then
970	if [[ "$global_source_path" != "" ]]
971	then
972	source_path=$global_source_path
973	else
974	printf "\n\n +++ no source path found in configuration file"
975	printf "\n for local host \"$localhost\" "
976	locat=source_path; exit
977	fi
978	fi
979	eval source_path=$source_path
980
981	if [[ ! -d $source_path ]]
982	then
983	printf "\n\n +++ source path \"$source_path\" on local host"
984	printf "\n \"$localhost\" does not exist"
985	locat=source_path; exit
986	fi
987
988	fi
989
990
991	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
992	# DURCH OPTION -G MITGETEILT)
993	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
994	then
995	global_revision=`svnversion $source_path 2>/dev/null`
996	global_revision="Rev: $global_revision"
997	fi
998
999
1000	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1001	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1002	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1003	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1004	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1005	if [[ -n $host && "$host" != $localhost ]]
1006	then
1007	do_batch=true
1008	do_remote=true
1009	case $host in
1010	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
1011	(*) printf "\n"
1012	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1013	printf "\n is not available"
1014	locat=nqs; (( iec = 0 )); exit;;
1015	esac
1016	else
1017	host=$localhost
1018	fi
1019
1020
1021	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1022	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1023	then
1024
1025	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1026	if [[ ! -n $numprocs ]]
1027	then
1028	printf "\n"
1029	printf "\n +++ option \"-K parallel\" requires additional specification"
1030	printf "\n of the number of processors to be used by"
1031	printf "\n mrun-option \"-X\" or by environment-variable"
1032	printf "\n \"numprocs\" in the configuration file"
1033	locat=numprocs; (( iec = 0 )); exit
1034	fi
1035
1036	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1037	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1038	# GESAMTPROZESSORANZAHL IST
1039	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1040	then
1041	printf "\n"
1042	printf "\n +++ option \"-T\" (tasks per node) is missing"
1043	printf "\n set -T option or define tasks_per_node in the config file"
1044	locat=tasks_per_node; (( iec = 0 )); exit
1045	fi
1046	if [[ $host != lcflow && $host != lcxt5m ]]
1047	then
1048	(( ival = $tasks_per_node ))
1049	(( pes = numprocs ))
1050	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1051	# then
1052	# (( pes = pes - 1 ))
1053	# fi
1054	(( ii = pes / ival ))
1055	if (( pes - ii * ival > 0 ))
1056	then
1057	printf "\n"
1058	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1059	printf "\n divisor of the total number of processors (option \"-X\")"
1060	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1061	locat=tasks_per_node; (( iec = 0 )); exit
1062	fi
1063	fi
1064
1065
1066	# IBMY HAT NUR EINEN KNOTEN
1067	if [[ $host = ibmy ]]
1068	then
1069	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1070	then
1071	printf "\n"
1072	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1073	printf "\n total number of processors (option \"-X\")"
1074	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1075	locat=tasks_per_node; (( iec = 0 )); exit
1076	fi
1077	fi
1078
1079
1080	# SETTINGS FOR SUBJOB-COMMAND
1081	OOPT="-O $threads_per_task"
1082
1083	# GESAMTZAHL DER KNOTEN BESTIMMEN
1084	if [[ "$tasks_per_node" != "" ]]
1085	then
1086	TOPT="-T $tasks_per_node"
1087	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1088	fi
1089
1090	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1091	# SETZEN
1092	if [[ $node_usage = default ]]
1093	then
1094	if [[ $host = ibms ]]
1095	then
1096	node_usage=shared
1097	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1098	then
1099	node_usage=singlejob
1100	else
1101	node_usage=not_shared
1102	fi
1103	fi
1104
1105	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1106	then
1107	printf "\n"
1108	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1109	printf "\n \"shared\" or \"not_shared\""
1110	locat=tasks_per_node; (( iec = 0 )); exit
1111	fi
1112
1113	fi
1114
1115	# PRUEFEN, OB HOSTFILE EXISTIERT
1116	if [[ -n $hostfile ]]
1117	then
1118	if [[ ! -f $hostfile ]]
1119	then
1120	printf "\n"
1121	printf "\n +++ hostfile \"$hostfile\" does not exist"
1122	locat=hostfile; exit
1123	fi
1124	fi
1125
1126	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1127	if [[ $host = ibmy && $do_remote = false ]]
1128	then
1129	if [[ ! -f $HOME/.rhosts ]]
1130	then
1131	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1132	printf "\n\n *** file:"
1133	printf "\n $HOME/.rhosts"
1134	printf "\n was created\n"
1135	fi
1136	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1137	then
1138	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1139	printf "\n\n *** file:"
1140	printf "\n $HOME/.rhosts"
1141	printf "\n was extended by the name of the current host\n"
1142	fi
1143	fi
1144
1145
1146	# Set default value for the maximum number of parallel io streams
1147	if [[ "$maximum_parallel_io_streams" = "" ]]
1148	then
1149	maximum_parallel_io_streams=$numprocs
1150	fi
1151
1152
1153	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1154	if [[ "$scp_port" != "" ]]
1155	then
1156	PORTOPT="-P $scp_port"
1157	SSH_PORTOPT="-p $scp_port"
1158	fi
1159
1160
1161	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1162	if [[ $queue = none ]]
1163	then
1164	case $host in
1165	(ibmh) queue=cluster;;
1166	(ibmkisti) queue=class.32plus;;
1167	(ibmy) queue=parallel;;
1168	(lckiaps) queue=normal;;
1169	(lckyoto) queue=ph;;
1170	(lckyuh) queue=fx-single;;
1171	(lckyut) queue=cx-single;;
1172	(lcsgib) queue=testq;;
1173	(lcsgih) queue=testq;;
1174	(lctit) queue=S;;
1175	(nech) queue=none;;
1176	(necriam) queue=SP;;
1177	(unics) queue=unics;;
1178	esac
1179	fi
1180
1181
1182	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1183	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1184	# ERMITTELN
1185	(( i = 0 ))
1186	while (( i < iin ))
1187	do
1188	(( i = i + 1 ))
1189	(( maxcycle = 0 ))
1190
1191	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1192	if [[ "${actionin[$i]}" = di ]]
1193	then
1194	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1195	# REM-MASCHINE AUSWERTEN
1196	eval filename=${pathin[$i]}/${endin[$i]}
1197	else
1198	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1199	# REM-MASCHINE AUSWERTEN
1200	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1201	fi
1202	eval pathname=${pathin[$i]}
1203
1204	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1205	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1206	then
1207	filename_input=$filename
1208	fi
1209
1210	# PRUEFEN AUF VORHANDENSEIN
1211	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1212	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1213	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1214	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1215	then
1216	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1217	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1218	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1219	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1220	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1221	if [[ "${transin[$i]}" != "locopt" ]]
1222	then
1223	printf "\n\n +++ INPUT-file: "
1224	if [[ "${extin[$i]}" = "" ]]
1225	then
1226	printf "\n $filename"
1227	else
1228	printf "\n $filename.${extin[$i]}"
1229	fi
1230	printf "\n does not exist\n"
1231	locat=input; exit
1232	else
1233	transin[$i]="unavailable"
1234	fi
1235	else
1236
1237	# ZYKLUSNUMMER FESTSTELLEN
1238	ls -1 -d $filename > filelist 2>/dev/null
1239	ls -1 -d $filename.* >> filelist 2>/dev/null
1240	while read zeile
1241	do
1242	cycle=$(echo $zeile \| cut -f2 -d".")
1243	if [[ "$cycle" = "$zeile" ]]
1244	then
1245	(( icycle = 0 ))
1246	elif [[ "$cycle" = "${extin[$i]}" ]]
1247	then
1248	(( icycle = 0 ))
1249	else
1250	(( icycle = $cycle ))
1251	fi
1252	if (( icycle > maxcycle ))
1253	then
1254	(( maxcycle = icycle ))
1255	file_to_be_used=$zeile
1256	fi
1257	done <filelist
1258	rm filelist
1259
1260	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1261	if (( maxcycle > 0 ))
1262	then
1263	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1264	then
1265	filename=${filename}.$maxcycle.${extin[$i]}
1266	else
1267	filename=${filename}.$maxcycle
1268	fi
1269	else
1270	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1271	then
1272	filename=${filename}.${extin[$i]}
1273	fi
1274	fi
1275
1276	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1277	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1278	absnamein[$i]=$filename
1279	if (( maxcycle > 0 ))
1280	then
1281	if [[ "${actionin[$i]}" = di ]]
1282	then
1283	frelin[$i]=${endin[$i]}.$maxcycle
1284	else
1285	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1286	fi
1287	else
1288	if [[ "${actionin[$i]}" = di ]]
1289	then
1290	frelin[$i]=${endin[$i]}
1291	else
1292	frelin[$i]=${afname}${endin[$i]}
1293	fi
1294	fi
1295
1296	fi
1297	done
1298
1299	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1300	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1301	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1302	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1303	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1304	(( i = 0 ))
1305	while (( i < iout ))
1306	do
1307	(( i = i + 1 ))
1308	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1309	then
1310	if [[ "${actionout[$i]}" = tr ]]
1311	then
1312	actionout[$i]=""
1313	elif [[ "${actionout[$i]}" = trpe ]]
1314	then
1315	actionout[$i]=pe
1316	elif [[ "${actionout[$i]}" = tra ]]
1317	then
1318	actionout[$i]=a
1319	fi
1320	(( maxcycle = 0 ))
1321	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1322	eval catalogname=${pathout[$i]}
1323	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1324	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1325	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1326	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1327	then
1328
1329	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1330	if cat /dev/null > $filename
1331	then
1332	rm $filename
1333	else
1334
1335	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1336	if [[ ! -d $catalogname ]]
1337	then
1338	if mkdir -p $catalogname
1339	then
1340	printf "\n\n *** directory:"
1341	printf "\n $catalogname"
1342	printf "\n was created\n"
1343	else
1344	printf "\n\n +++ OUTPUT-file:"
1345	printf "\n $filename"
1346	printf "\n cannot be created, because directory does not exist"
1347	printf "\n and cannot be created either"
1348	printf "\n"
1349	locat=output ; exit
1350	fi 2>/dev/null
1351	else
1352	printf "\n\n +++ OUTPUT-file:"
1353	printf "\n $filename"
1354	printf "\n cannot be created, although directory exists"
1355	printf "\n"
1356	locat=output ; exit
1357	fi
1358	fi 2>/dev/null
1359	else
1360
1361	# ZYKLUSNUMMER FESTSTELLEN
1362	ls -1 -d $filename > filelist 2>/dev/null
1363	ls -1 -d $filename.* >> filelist 2>/dev/null
1364	while read zeile
1365	do
1366	cycle=$(echo $zeile \| cut -f2 -d".")
1367	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1368	then
1369	(( icycle = 1 ))
1370	else
1371	(( icycle = $cycle + 1 ))
1372	fi
1373	if (( icycle > maxcycle ))
1374	then
1375	(( maxcycle = icycle ))
1376	fi
1377	done <filelist
1378	rm filelist
1379	fi
1380
1381	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1382	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1383	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1384	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1385	if [[ "${actionout[$i]}" != a ]]
1386	then
1387	if (( maxcycle > 0 ))
1388	then
1389	filename=${filename}.$maxcycle
1390	if cat /dev/null > $filename
1391	then
1392	rm $filename
1393	else
1394	printf "\n +++ OUTPUT-file:"
1395	printf "\n $filename"
1396	printf "\n cannot be created"
1397	locat=output ; exit
1398	fi
1399	fi
1400	else
1401	(( maxcycle = maxcycle - 1 ))
1402	if (( maxcycle > 0 ))
1403	then
1404	filename=${filename}.$maxcycle
1405	fi
1406	fi
1407
1408	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1409	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1410	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1411	pathout[$i]=$filename
1412	if (( maxcycle > 0 ))
1413	then
1414	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1415	else
1416	frelout[$i]=${fname}${endout[$i]}
1417	fi
1418
1419	fi
1420	done
1421
1422
1423	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1424	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1425	then
1426	if [[ "$dvr_inc" = "" ]]
1427	then
1428	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1429	printf "\n This is required for the dvrp_graphics package.\n"
1430	locat=dvr; exit
1431	fi
1432	if [[ "$dvr_lib" = "" ]]
1433	then
1434	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1435	printf "\n This is required for the dvrp_graphics package.\n"
1436	locat=dvr; exit
1437	fi
1438	fi
1439
1440
1441	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1442	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1443	# UEBERSETZT ZU WERDEN)
1444	if [[ "$mainprog" = "" && "$executable" = "" ]]
1445	then
1446	printf "\n +++ neither main program nor executable defined"
1447	locat=source; exit
1448	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1449	then
1450	printf "\n +++ main program as well as executable defined"
1451	locat=source; exit
1452	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1453	then
1454	do_compile=false
1455	fi
1456
1457
1458	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1459	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1460	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1461	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1462	then
1463	rm -rf SOURCES_FOR_RUN_$fname
1464	mkdir SOURCES_FOR_RUN_$fname
1465	fi
1466
1467
1468	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1469	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1470	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1471	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1472	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1473	then
1474
1475	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1476
1477	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1478	then
1479
1480	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1481	source_list=""
1482	cd $source_path
1483
1484
1485	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1486	if [[ ! -d .svn ]]
1487	then
1488	printf "\n\n +++ source directory"
1489	printf "\n \"$source_path\" "
1490	printf "\n is not under control of \"subversion\"."
1491	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1492	fi
1493
1494
1495	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1496	Filenames=""
1497	svn status > tmp_mrun
1498	while read line
1499	do
1500	firstc=`echo $line \| cut -c1`
1501	if [[ $firstc = M \|\| $firstc = "?" ]]
1502	then
1503	Name=`echo "$line" \| cut -c8-`
1504	extension=`echo $Name \| cut -d. -f2`
1505	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1506	then
1507	Filenames="$Filenames "$Name
1508	fi
1509	fi
1510	done < tmp_mrun
1511
1512
1513	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1514	for dateiname in $Filenames
1515	do
1516	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1517	source_list=$source_list"$dateiname "
1518	done
1519
1520	cd - > /dev/null
1521
1522
1523	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1524	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1525	# VORHANDEN
1526	elif [[ "$source_list" != "" && $restart_run != true ]]
1527	then
1528
1529	cd $source_path
1530
1531	for filename in $source_list
1532	do
1533
1534	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1535	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1536	then
1537	printf "\n +++ source code file: $filename"
1538	printf "\n must not contain (\"/\") "
1539	locat=source; exit
1540	fi
1541
1542	if [[ ! -f $filename ]]
1543	then
1544	printf "\n +++ source code file: $filename"
1545	printf "\n does not exist"
1546	locat=source; exit
1547	else
1548	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1549	fi
1550
1551	done
1552
1553	cd - > /dev/null
1554
1555	fi
1556
1557
1558	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1559	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1560	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1561	if [[ $restart_run != true ]]
1562	then
1563
1564	if [[ ! -f "$source_path/$mainprog" ]]
1565	then
1566	printf "\n\n +++ main program: $mainprog"
1567	printf "\n does not exist in source directory"
1568	printf "\n \"$source_path\"\n"
1569	locat=source; exit
1570	else
1571	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1572	then
1573	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1574	source_list=${mainprog}" $source_list"
1575	fi
1576	fi
1577	fi
1578
1579
1580	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1581	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1582	if [[ "$restart_run" != true ]]
1583	then
1584	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1585	if [[ ! -f $makefile ]]
1586	then
1587	printf "\n +++ file \"$makefile\" does not exist"
1588	locat=make; exit
1589	else
1590	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1591	fi
1592	fi
1593
1594
1595	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1596	if [[ $restart_run != true && "$add_source_path" != "" ]]
1597	then
1598
1599	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1600	if [[ ! -d $add_source_path ]]
1601	then
1602	printf "\n\n +++ WARNING: additional source code directory"
1603	printf "\n \"$add_source_path\" "
1604	printf "\n does not exist or is not a directory."
1605	printf "\n No source code will be used from this directory!\n"
1606	add_source_path=""
1607	if [[ $silent == false ]]
1608	then
1609	sleep 3
1610	fi
1611	else
1612
1613	cd $add_source_path
1614	found=false
1615
1616	Names=$(ls -1 *.f90 2>&1)
1617	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1618	Names=$(ls -1 *.F90 2>&1)
1619	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1620	Names=$(ls -1 *.F 2>&1)
1621	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1622	Names=$(ls -1 *.f 2>&1)
1623	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1624	Names=$(ls -1 *.c 2>&1)
1625	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1626
1627	cd - > /dev/null
1628	cd SOURCES_FOR_RUN_$fname
1629
1630	# COPY MAKEFILE IF EXISTING
1631	if [[ -f $add_source_path/Makefile ]]
1632	then
1633	printf "\n\n *** user Makefile from directory"
1634	printf "\n \"$add_source_path\" is used \n"
1635	if [[ $silent == false ]]
1636	then
1637	sleep 1
1638	fi
1639	cp $add_source_path/Makefile .
1640	fi
1641
1642	for dateiname in $AddFilenames
1643	do
1644	if [[ -f $dateiname ]]
1645	then
1646	printf "\n +++ source code file \"$dateiname\" found in additional"
1647	printf "\n source code directory \"$add_source_path\" "
1648	printf "\n but was also given with option \"-s\" which means that it should be taken"
1649	printf "\n from directory \"$source_path\"."
1650	locat=source; exit
1651	fi
1652
1653	cp $add_source_path/$dateiname .
1654	source_list="$source_list $dateiname"
1655
1656	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1657	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1658	then
1659	printf "\n\n +++ user file \"$dateiname\" "
1660	printf "\n is not listed in Makefile \n"
1661	locat=source; exit
1662	else
1663
1664	# Default User-Interface von der Liste entfernen, falls Datei
1665	# ein User-Interface enthaelt
1666	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1667	# then
1668	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1669	# then
1670	# rm -rf user_interface.f90
1671	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1672	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1673	# printf "\n since a user-interface is found in file"
1674	# printf "\n \"$add_source_path/$dateiname\" \n"
1675	# sleep 3
1676	# else
1677	if [[ $found = false ]]
1678	then
1679	found=true
1680	printf "\n\n *** following user file(s) added to the"
1681	printf " files to be translated:\n "
1682	fi
1683	printf "$dateiname "
1684	if [[ $silent == false ]]
1685	then
1686	sleep 0.5
1687	fi
1688
1689	fi
1690	done
1691	[[ $found = true ]] && printf "\n"
1692	cd - > /dev/null
1693	fi
1694	fi
1695
1696
1697	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1698	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1699	if [[ $restart_run != true && -n $package_list ]]
1700	then
1701
1702	cd $source_path
1703
1704	for package in $package_list
1705	do
1706
1707	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1708
1709	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1710	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1711	# LIEFERT
1712	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1713
1714
1715	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1716	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1717	for source_list_name in $package_source_list
1718	do
1719	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1720	then
1721
1722	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1723	ending=`echo $source_list_name \| cut -f2 -d.`
1724	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1725	then
1726	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1727	source_list="$source_list $source_list_name"
1728	fi
1729	fi
1730	done
1731	done
1732
1733	cd - > /dev/null
1734	fi
1735
1736
1737	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1738	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1739	# if [[ "$restart_run" != true ]]
1740	# then
1741	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1742	# if [[ ! -f $makefile ]]
1743	# then
1744	# printf "\n +++ file \"$makefile\" does not exist"
1745	# locat=make; exit
1746	# else
1747	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1748	# fi
1749	# fi
1750
1751	fi # do_compile=true
1752
1753
1754	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1755	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1756	if [[ $do_compile = true \|\| $create_executable_for_batch = true ]]
1757	then
1758
1759	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1760	# ZUSAMMENSETZEN
1761	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1762	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1763	then
1764	cpp_options="${cpp_options},-D__ibm=__ibm"
1765	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1766	then
1767	cpp_options="$cpp_options -D__nec"
1768	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1769	then
1770	cpp_options="$cpp_options -D__lc"
1771	else
1772	cpp_options="$cpp_options -D__$localhost"
1773	fi
1774
1775	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1776	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1777	then
1778	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1779	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1780	else
1781	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1782	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1783	fi
1784
1785	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1786	if [[ -n $package_list ]]
1787	then
1788	for package in $package_list
1789	do
1790	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1791	then
1792	if [[ $package != "dvrp_graphics+1PE" ]]
1793	then
1794	cpp_options="${cpp_options},-D__$package=__$package"
1795	else
1796	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1797	export use_seperate_pe_for_dvrp_output=true
1798	fi
1799	else
1800	if [[ $package != "dvrp_graphics+1PE" ]]
1801	then
1802	cpp_options="$cpp_options -D__$package"
1803	else
1804	cpp_options="$cpp_options -D__dvrp_graphics"
1805	export use_seperate_pe_for_dvrp_output=true
1806	fi
1807	fi
1808	done
1809	fi
1810
1811	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1812	if [[ -n $cpp_opts ]]
1813	then
1814	for popts in $cpp_opts
1815	do
1816	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1817	then
1818	cpp_options="${cpp_options},-D__$popts=__$popts"
1819	else
1820	cpp_options="$cpp_options -D__$popts"
1821	fi
1822	done
1823	fi
1824
1825	else
1826
1827
1828	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1829	if [[ $do_remote = false ]]
1830	then
1831	if [[ ! -f $executable ]]
1832	then
1833	printf "\n +++ executable file: $executable"
1834	printf "\n does not exist"
1835	locat=executable; exit
1836	fi
1837	fi
1838	fi
1839
1840
1841	# JOBMODUS FESTSTELLEN
1842	if [[ "$ENVIRONMENT" = BATCH ]]
1843	then
1844	jobmo=BATCH
1845	else
1846	jobmo=INTERACTIVE
1847	fi
1848
1849
1850	# no interactive runs on lctit
1851	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1852	then
1853	printf "\n +++ no interactive runs allowed on host \"$host\" "
1854	printf "\n please submit batch job using mrun option \"-b\" \n"
1855	locat=normal; exit
1856	fi
1857
1858
1859	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1860	# DURCH BENUTZER ANDERWEITIG VEREINBART
1861	if [[ "$compiler_name" = "" ]]
1862	then
1863
1864	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1865	locat=compiler_name; exit
1866
1867	fi
1868
1869
1870	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1871	[[ $localhost = necriam ]] && compiler_name=mpif90
1872
1873
1874
1875	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1876	kennung=$RANDOM
1877	if [[ "$tmp_user_catalog" = "" ]]
1878	then
1879	if [[ $localhost = ibmh ]]
1880	then
1881	tmp_user_catalog=$SCRATCH
1882	elif [[ $localhost = nech ]]
1883	then
1884	tmp_user_catalog=$WRKSHR
1885	else
1886	tmp_user_catalog=/tmp
1887	fi
1888	fi
1889	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1890
1891
1892	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1893	# BESTIMMEN
1894	if [[ "$tmp_data_catalog" = "" ]]
1895	then
1896	if [[ $localhost = nech ]]
1897	then
1898	tmp_data_catalog=$WRKSHR/mrun_restart_data
1899	else
1900	tmp_data_catalog=/tmp/mrun_restart_data
1901	fi
1902	fi
1903
1904
1905	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1906	# ERSETZEN
1907	if [[ $do_remote = false && $do_compile = true \|\| $create_executable_for_batch = true ]]
1908	then
1909	eval fopts=\"$fopts\"
1910	eval lopts=\"$lopts\"
1911	fi
1912
1913
1914
1915	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1916	fopts="$fopts $netcdf_inc $dvr_inc"
1917	lopts="$lopts $netcdf_lib $dvr_lib"
1918	ROPTS="$ropts"
1919	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1920	# then
1921	XOPT="-X $numprocs"
1922	# fi
1923
1924
1925
1926	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1927	# GRAMM BENOETIGT
1928	done=false
1929	while [[ $done = false ]]
1930	do
1931	cputime=$cpumax
1932	if (( $cputime == 0 ))
1933	then
1934	if [[ $do_batch = true ]]
1935	then
1936	printf "\n +++ cpu-time is undefined"
1937	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1938	printf "\n >>> "
1939	read cputime 1>/dev/null 2>&1
1940	else
1941	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1942	fi
1943	else
1944	done=true
1945	fi
1946	cpumax=$cputime
1947	done
1948
1949	(( minuten = cputime / 60 ))
1950	(( sekunden = cputime - minuten * 60 ))
1951
1952
1953	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1954	if [[ $do_batch = true ]]
1955	then
1956	done=false
1957	while [[ $done = false ]]
1958	do
1959	if (( memory == 0 ))
1960	then
1961	printf "\n +++ memory demand is undefined"
1962	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1963	printf "\n >>> "
1964	read memory 1>/dev/null 2>&1
1965	else
1966	done=true
1967	fi
1968	done
1969	fi
1970
1971
1972	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1973	if [[ $do_remote = true && -z $remote_username ]]
1974	then
1975	while [[ -z $remote_username ]]
1976	do
1977	printf "\n +++ username on remote host \"$host\" is undefined"
1978	printf "\n >>> Please type username:"
1979	printf "\n >>> "
1980	read remote_username
1981	done
1982	mc="$mc -u$remote_username"
1983	fi
1984
1985	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1986	if [[ "$login_init_cmd" != "" ]]
1987	then
1988	export init_cmds="${login_init_cmd};"
1989	fi
1990
1991
1992	# set module load command and export for subjob
1993	if [[ "$modules" != "" ]]
1994	then
1995	if [[ $host = lctit ]]
1996	then
1997	export module_calls=". $modules"
1998	else
1999	export module_calls="module load ${modules};"
2000	fi
2001	fi
2002
2003	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2004	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2005	then
2006	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2007	then
2008	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2009	fi
2010	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2011	# then
2012	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2013	# echo "*** module_calls = $module_calls"
2014	# fi
2015	fi
2016
2017
2018	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2019	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2020	then
2021	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2022	then
2023	mpilib=mpt
2024	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2025	then
2026	mpilib=mvapich
2027	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2028	then
2029	mpilib=impi
2030	fi
2031	fi
2032
2033
2034
2035	###########################################################################
2036	# HEADER-AUSGABE
2037	###########################################################################
2038
2039
2040	calltime=$(date)
2041	printf "\n"
2042	# [[ $silent = false ]] && clear
2043	printf "#------------------------------------------------------------------------# \n"
2044	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2045	printf "\| \| \n"
2046	spalte1="called on:"; spalte2=$localhost_realname
2047	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2048	if [[ $local_compile = false ]]
2049	then
2050	if [[ $do_remote = true ]]
2051	then
2052	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2053	else
2054	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2055	fi
2056	else
2057	spalte1="compiling test only!"; spalte2=""
2058	fi
2059	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2060	if [[ -n $numprocs ]]
2061	then
2062	if [[ $run_coupled_model = false ]]
2063	then
2064	spalte1="number of PEs:"; spalte2=$numprocs
2065	else
2066	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2067	fi
2068	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2069	fi
2070	if [[ -n $tasks_per_node ]]
2071	then
2072	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2073	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2074	fi
2075	if [[ $maximum_parallel_io_streams != $numprocs ]]
2076	then
2077	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2078	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2079	fi
2080	if [[ $use_openmp = true ]]
2081	then
2082	spalte1="threads per task:"; spalte2="$threads_per_task"
2083	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2084	fi
2085	printf "\| \| \n"
2086	if [[ $do_compile = true ]]
2087	then
2088	if [[ "$mopts" != "" ]]
2089	then
2090	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2091	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2092	zeile=$(echo "$mopts" \| cut -c46-)
2093	while [[ "$zeile" != "" ]]
2094	do
2095	spalte1=""
2096	spalte2=$(echo "$zeile" \| cut -c-45)
2097	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2098	zeile=$(echo "$zeile" \| cut -c46-)
2099	done
2100	fi
2101
2102	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2103	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2104	zeile=$(echo "$cpp_options" \| cut -c46-)
2105	while [[ "$zeile" != "" ]]
2106	do
2107	spalte1=""
2108	spalte2=$(echo "$zeile" \| cut -c-45)
2109	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2110	zeile=$(echo "$zeile" \| cut -c46-)
2111	done
2112
2113	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2114	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2115	zeile=$(echo "$fopts" \| cut -c46-)
2116	while [[ "$zeile" != "" ]]
2117	do
2118	spalte1=""
2119	spalte2=$(echo "$zeile" \| cut -c-45)
2120	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2121	zeile=$(echo "$zeile" \| cut -c46-)
2122	done
2123
2124	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2125	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2126	zeile=$(echo "$lopts" \| cut -c46-)
2127	while [[ "$zeile" != "" ]]
2128	do
2129	spalte1=""
2130	spalte2=$(echo "$zeile" \| cut -c-45)
2131	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2132	zeile=$(echo "$zeile" \| cut -c46-)
2133	done
2134
2135	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2136	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2137	zeile=$(echo "$modules" \| cut -c46-)
2138	while [[ "$zeile" != "" ]]
2139	do
2140	spalte1=""
2141	spalte2=$(echo "$zeile" \| cut -c-45)
2142	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2143	zeile=$(echo "$zeile" \| cut -c46-)
2144	done
2145
2146	spalte1="main program:"; spalte2=$mainprog
2147	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2148	else
2149	spalte1=executable:; spalte2=$executable
2150	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2151	fi
2152	printf "\| \| \n"
2153	spalte1="base name of files:"; spalte2=$fname
2154	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2155	if [[ $fname != $afname ]]
2156	then
2157	spalte1="base name of input files:"; spalte2=$afname
2158	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2159	fi
2160	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2161	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2162	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2163	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2164
2165	if [[ "$ocean_file_appendix" = true ]]
2166	then
2167	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2168	fi
2169
2170	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2171	then
2172	spalte1="memory demand / PE":; spalte2="$memory MB"
2173	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2174	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2175	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2176	fi
2177
2178	if [[ $do_compile = true ]]
2179	then
2180	printf "\| \| \n"
2181	printf "\| Files to be compiled: \| \n"
2182	zeile=$source_list
2183	while [[ "$zeile" != "" ]]
2184	do
2185	linestart=$(echo $zeile \| cut -c-70)
2186	printf "\| %-70s \| \n" "$linestart"
2187	zeile=$(echo "$zeile" \| cut -c71-)
2188	done
2189	fi
2190	printf "#------------------------------------------------------------------------#"
2191
2192
2193
2194	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2195	if [[ $do_trace = true ]]
2196	then
2197	(( i = 0 ))
2198	while (( i < iin ))
2199	do
2200	(( i = i + 1 ))
2201	if (( i == 1 ))
2202	then
2203	printf "\n\n >>> INPUT-file assignments:\n"
2204	fi
2205	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2206	done
2207	(( i = 0 ))
2208	while (( i < iout ))
2209	do
2210	(( i = i + 1 ))
2211	if (( i == 1 ))
2212	then
2213	printf "\n\n >>> OUTPUT-file assignments:\n"
2214	fi
2215	printf "\n ${localout[$i]} : ${pathout[$i]}"
2216	done
2217	(( i = 0 ))
2218	while (( i < iic ))
2219	do
2220	(( i = i + 1 ))
2221	if (( i == 1 ))
2222	then
2223	printf "\n\n >>> INPUT-commands:\n"
2224	fi
2225	printf "\n ${in_command[$i]}"
2226	done
2227	(( i = 0 ))
2228	while (( i < ioc ))
2229	do
2230	(( i = i + 1 ))
2231	if (( i == 1 ))
2232	then
2233	printf "\n\n >>> OUTPUT-commands:\n"
2234	fi
2235	printf "\n ${out_command[$i]}"
2236	done
2237	fi
2238
2239
2240	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2241	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2242	then
2243	antwort=dummy
2244	printf "\n\n"
2245	printf " >>> everything o.k. (y/n) ? "
2246	while read antwort
2247	do
2248	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2249	then
2250	printf " >>> everything o.k. (y/n) ? "
2251	else
2252	break
2253	fi
2254	done
2255	if [[ $antwort = n \|\| $antwort = N ]]
2256	then
2257	locat=user_abort; (( iec = 0 )); exit
2258	fi
2259	if [[ $do_batch = true ]]
2260	then
2261	printf " >>> batch-job will be created and submitted"
2262	else
2263	if [[ $local_compile = false ]]
2264	then
2265	printf " >>> MRUN will now continue to execute on this machine"
2266	else
2267	printf " >>> a test compilation will now be carried out on this machine"
2268	fi
2269	fi
2270	fi
2271
2272
2273	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2274	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2275	check_depository="${working_directory}/trunk/UTIL"
2276	check_sources="${working_directory}/tmp_check_namelist_files"
2277	skip_check=false
2278
2279	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2280	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2281	then
2282	skip_check=true
2283	reason="run on remote host or parameter file check has not been compiled."
2284	fi
2285	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2286	then
2287	skip_check=true
2288	reason="parameter file check has not been compiled."
2289	fi
2290
2291	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2292	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2293	then
2294	skip_check=true
2295	reason="serial run."
2296	fi
2297
2298	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2299	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2300	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2301	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2302	if [[ $check_namelist_files == false ]]
2303	then
2304	skip_check=true
2305	reason="-z option set."
2306	fi
2307
2308	if [[ $fromhost != $localhost ]]
2309	then
2310	skip_check=true
2311	reason="submitting host is local host."
2312	fi
2313
2314	if [[ $run_coupled_model == true ]]
2315	then
2316	skip_check=true
2317	reason="coupled run."
2318	fi
2319
2320	if [[ $restart_run == true ]]
2321	then
2322	skip_check=true
2323	reason="restart run."
2324	fi
2325
2326	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2327	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2328	last_char=`echo $filename_input \| cut -c $last_char_int`
2329	if [[ "$last_char" == "f" ]]
2330	then
2331	skip_check=true
2332	reason="restart run."
2333	fi
2334
2335	if [[ $skip_check == false ]]
2336	then
2337	tmp_check=${working_directory}/tmp_check
2338
2339	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2340	# NOT NECESSARILY REQUIRED
2341	line=""
2342	found=false
2343	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2344	while read line1
2345	do
2346	line="$line1"
2347	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2348	then
2349	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2350	found=true
2351	fi
2352	done < $tmp_check
2353
2354	if [[ $found = false ]]
2355	then
2356	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2357	fi
2358
2359	rm -rf ${working_directory}/tmp_check
2360
2361	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2362	for item in $input_list
2363	do
2364	if [[ "$item" == "restart" ]]
2365	then
2366	check_restart=1
2367	else
2368	check_restart=0
2369	fi
2370	done
2371
2372	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2373	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2374	then
2375	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2376	locat=check_namelist; exit
2377	fi
2378
2379	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2380	if [[ $check_restart == 1 ]]
2381	then
2382
2383	filenamef="${filename_input}f"
2384	if [[ ! -f $filenamef ]]
2385	then
2386	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2387	check_restart=0
2388	answer=dummy
2389	printf "\n\n"
2390
2391	if [[ $silent == false ]]
2392	then
2393	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2394	do
2395	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2396	read answer
2397	done
2398	if [[ $answer = a \|\| $answer = A ]]
2399	then
2400	printf "\n +++ Aborting...."
2401	locat=normal; exit
2402	fi
2403	fi
2404	else
2405	check_restart=1
2406	fi
2407	fi
2408
2409	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2410	mkdir $check_sources
2411	cd $check_sources
2412
2413
2414	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2415	if [[ -d $add_source_path ]]
2416	then
2417	printf "\n\n *** copying files from $check_depository"
2418	cp $check_depository/check_namelist_files.tar ./
2419
2420	printf "\n\n *** untar of makefile and source files in $check_sources"
2421	tar -xf check_namelist_files.tar > /dev/null 2>&1
2422
2423	printf "\n\n *** adding user code."
2424	cp $add_source_path/* ./
2425	touch check_namelist_files.f90
2426
2427	# GET COMPILER OPTIONS AND PERFORM MAKE
2428	printf "\n\n *** compiling code if necessary...\n"
2429
2430	# workaround for batch jobs on local machine (lcxe6)
2431	if [[ $do_batch == true && $do_remote == false ]]
2432	then
2433	eval $init_cmds
2434	fi
2435
2436	# GET CHECK OPTIONS
2437	line=""
2438	found=false
2439
2440	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2441
2442	while read line1
2443	do
2444
2445	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2446	then
2447	line="$line1"
2448	fi
2449
2450	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2451	then
2452	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2453	line="$line "
2454	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2455	found=true
2456	fi
2457
2458	done < $tmp_check
2459	copts_check="$copts_check -D__check -D__parallel"
2460
2461	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2462
2463	# GET MAKE OUTPUT
2464	if [[ $? != 0 ]]
2465	then
2466	printf "\n +++ error during make."
2467	answer=dummy
2468	printf "\n\n"
2469	if [[ $silent == false ]]
2470	then
2471	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2472	do
2473	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2474	read answer
2475	done
2476	if [[ $answer = a \|\| $answer = A ]]
2477	then
2478	printf "\n +++ Aborting..."
2479	rm -rf $check_sources
2480	locat=normal; exit
2481	else
2482	skip_check=true
2483	fi
2484	else
2485	skip_check=true
2486	fi
2487	fi
2488	else
2489	cp $PALM_BIN/check_namelist_files.x ./
2490	fi
2491
2492	cp $filename_input ./PARIN
2493	if [[ $check_restart == 1 ]]
2494	then
2495	cp $filenamef ./PARINF
2496	fi
2497
2498	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2499	then
2500	printf "\n *** adding topography data"
2501	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2502
2503	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2504	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2505	# WHICH REQUIRE SUFFICIENT MEMORY
2506	ulimit -s unlimited
2507	fi
2508
2509	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2510	cat > ENVPAR << %%END%%
2511	&envpar run_identifier = '$fname', host = '$host',
2512	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2513	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2514	maximum_cpu_time_allowed = ${cpumax}.,
2515	revision = '$global_revision',
2516	local_dvrserver_running = $local_dvrserver_running /
2517
2518	%%END%%
2519
2520	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2521	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2522	then
2523	printf "\n +++ WARNING: check_namelist_files.x not found."
2524	answer=dummy
2525	printf "\n\n"
2526
2527	if [[ $silent == false ]]
2528	then
2529	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2530	do
2531	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2532	read answer
2533	done
2534	if [[ $answer = a \|\| $answer = A ]]
2535	then
2536	printf "\n +++ Aborting..."
2537	rm -rf $check_sources
2538	locat=normal; exit
2539	else
2540	printf "\n *** skipping parameter file check."
2541	fi
2542	fi
2543
2544	elif [[ $skip_check == false ]]
2545	then
2546	# STARTING THE PARAMETER FILE CHECK
2547	printf "\n\n *** starting parameter file check..."
2548
2549	# CHECKING THE P3D FILE
2550	printf "\n\n (1) checking $filename_input"
2551	echo "$numprocs 0 0" > VARIN
2552	errors=`./check_namelist_files.x < VARIN 2>&1`
2553
2554	check_error=false
2555	if [[ "$errors" == "" ]]
2556	then
2557	printf " --> o.k."
2558	else
2559	printf " --> failed."
2560	check_error=true
2561	printf "\n\n $errors"
2562	fi
2563
2564	# CHECKING THE PD3F FILE IF NECESSARY
2565	if [[ $check_restart == 1 && $check_error == false ]]
2566	then
2567	printf "\n\n (2) checking $filenamef"
2568
2569	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2570	# IN &INIPAR LIST
2571	found=false
2572	cat PARINF \| while read line
2573	do
2574	line=$(echo $line\|sed 's/ //g')
2575	if [[ $line == "&inipar" ]]
2576	then
2577	start_search=true
2578	fi
2579
2580	if [[ $start_search == true ]]
2581	then
2582	if [[ $line == "initializing_actions='read_restart_data'" ]]
2583	then
2584	found=true
2585	break
2586	fi
2587	fi
2588
2589	if [[ $line == "/" ]]
2590	then
2591	start_search=false
2592	fi
2593
2594	done
2595
2596	if [[ $found = false ]]
2597	then
2598	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2599	printf "\n in &inipar list in $fname$p3df_suffix."
2600	rm -rf $check_sources
2601	locat=check_namelist; exit
2602	fi
2603
2604	# READ max_user_pr FROM FILES
2605	if [[ -f parin_for_check ]]
2606	then
2607	read max_pr_user < parin_for_check
2608	else
2609	max_user_pr=0
2610	fi
2611
2612	echo "$numprocs 1 $max_pr_user" > VARIN
2613	errors=`./check_namelist_files.x < VARIN 2>&1`
2614
2615	if [[ "$errors" == "" ]]
2616	then
2617	printf " --> o.k."
2618	else
2619	printf " --> failed."
2620	check_error=true
2621	printf "\n\n $errors"
2622	fi
2623	fi
2624
2625	# REPORT ERRORS AND CONTINUE/EXIT
2626	if [[ $check_error == true ]]
2627	then
2628	printf "\n +++ errors found in the parameter file!\n"
2629	answer=dummy
2630	printf "\n\n"
2631
2632	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2633	do
2634	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2635	read answer
2636	done
2637
2638	if [[ $answer = a \|\| $answer = A ]]
2639	then
2640	printf "\n +++ Aborting..."
2641	rm -rf $check_sources
2642	locat=normal; exit
2643	fi
2644	else
2645	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2646	fi
2647	rm -rf $check_sources
2648	fi
2649	else
2650	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2651	fi
2652
2653	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2654	rm -rf $check_sources
2655	cd $working_directory
2656
2657
2658	# DETERMINE PATH FOR MAKE DEPOSITORY
2659	if [[ $do_batch = false \|\| $create_executable_for_batch = true ]]
2660	then
2661
2662	line=""
2663	grep "%depository_path" $config_file > tmp_mrun
2664	while read line
2665	do
2666	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2667	then
2668	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2669	then
2670	global_depository_path=`echo $line \| cut -d" " -s -f2`
2671	fi
2672	fi
2673	done < tmp_mrun
2674
2675	line=""
2676	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2677	while read line
2678	do
2679	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2680	then
2681	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2682	then
2683	local_depository_path=`echo $line \| cut -d" " -s -f2`
2684	fi
2685	fi
2686	done < tmp_mrun
2687
2688	if [[ "$local_depository_path" = "" ]]
2689	then
2690	if [[ "$global_depository_path" != "" ]]
2691	then
2692	local_depository_path=$global_depository_path
2693	else
2694	printf "\n\n +++ no depository path found in configuration file"
2695	printf "\n for local host \"$localhost\" "
2696	printf "\n please set \"\%depository_path\" in configuration file\n"
2697	locat=config_file; exit
2698	fi
2699	fi
2700	eval local_depository_path=$local_depository_path
2701	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2702	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2703
2704
2705	basename=`echo $mainprog \| cut -f1 -d"."`
2706	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2707	if [[ ! -f $make_depository ]]
2708	then
2709	printf "\n"
2710	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2711	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2712	fi
2713
2714	fi
2715
2716
2717	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2718	# CHENDE AKTIONEN DURCHGEFUEHRT
2719	if [[ $do_batch = false ]]
2720	then
2721
2722
2723	# TEMPORAEREN KATALOG ERZEUGEN
2724	mkdir -p $TEMPDIR
2725	chmod go+rx $TEMPDIR
2726	tmpcreate=true
2727
2728
2729	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2730	# TEMPORAERES VERZEICHNIS KOPIEREN
2731	if [[ $do_compile = true ]]
2732	then
2733
2734	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2735	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2736	if [[ $localhost = nech ]]
2737	then
2738	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2739	if mkdir -p $TEMPDIR_COMPILE
2740	then
2741	printf "\n *** \"$TEMPDIR_COMPILE\" "
2742	printf "\n is generated as temporary directory for cross compiling\n"
2743	else
2744	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2745	printf "\n needed for cross compilation failed"
2746	locat=compile
2747	exit
2748	fi
2749	else
2750	TEMPDIR_COMPILE=$TEMPDIR
2751	fi
2752
2753	cp $make_depository $TEMPDIR_COMPILE
2754	cd $TEMPDIR_COMPILE
2755	tar -xf $make_depository > /dev/null 2>&1
2756	cd - > /dev/null
2757
2758	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2759
2760	else
2761
2762	cp $executable ${TEMPDIR}/a.out
2763
2764	fi
2765
2766
2767	# WECHSEL IN TEMPORAEREN KATALOG
2768	cd $TEMPDIR
2769	printf "\n *** changed to temporary directory: $TEMPDIR"
2770
2771
2772	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2773	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2774	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2775	# ERMITTELN
2776	(( i = 0 ))
2777	while (( i < iout ))
2778	do
2779	(( i = i + 1 ))
2780	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2781	then
2782	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2783	else
2784	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2785	fi
2786	done
2787
2788
2789	# IF REQUIRED, START WITH COMPILING ACTIONS
2790	if [[ $do_compile = true ]]
2791	then
2792
2793
2794	if [[ -f a.out ]]
2795	then
2796
2797	# EXECUTABLE WAS CREATED DURING INTERACTIVE CALL OF MRUN
2798	printf "\n\n\n *** executable a.out found"
2799	printf "\n no compilation required \n"
2800
2801	else
2802
2803	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2804	printf "\n\n\n *** compilation starts \n$striche\n"
2805	printf " *** compilation with make using following options:\n"
2806	printf " make depository: $make_depository"
2807	if [[ "$mopts" != "" ]]
2808	then
2809	printf " make options: $mopts\n"
2810	fi
2811	printf " compilername: $compiler_name\n"
2812	printf " compiler options: $fopts\n"
2813	printf " preprocessor directives: $cpp_options \n"
2814	printf " linker options: $lopts \n"
2815	if [[ "$modules" != "" ]]
2816	then
2817	printf " modules to be load: $modules \n"
2818	fi
2819	printf " source code files: $source_list \n"
2820
2821	if [[ $localhost = nech ]]
2822	then
2823	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2824	cp $TEMPDIR_COMPILE/a.out .
2825	[[ $? != 0 ]] && compile_error=true
2826	rm -rf $TEMPDIR_COMPILE
2827	elif [[ $localhost = ibmh ]]
2828	then
2829	printf " compiler is called via ssh on \"plogin1\" \n"
2830	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2831	[[ ! -f a.out ]] && compile_error=true
2832	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2833	elif [[ $localhost = lcsgib ]]
2834	then
2835	printf " compiler is called via ssh on \"bicegate0\" \n"
2836	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2837	[[ ! -f a.out ]] && compile_error=true
2838	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2839	elif [[ $localhost = lcsgih ]]
2840	then
2841	printf " compiler is called via ssh on \"hicegate0\" \n"
2842	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2843	[[ ! -f a.out ]] && compile_error=true
2844	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2845	elif [[ $localhost = lcflow ]]
2846	then
2847	printf " compiler is called via ssh on \"flow\" \n"
2848	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2849	[[ ! -f a.out ]] && compile_error=true
2850	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2851	elif [[ $localhost = lccrayf ]]
2852	then
2853	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2854	else
2855	[[ "$init_cmds" != "" ]] && eval $init_cmds
2856	[[ "$module_calls" != "" ]] && eval $module_calls
2857	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2858	fi
2859
2860	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2861	then
2862	printf "\n +++ error occured while compiling or linking"
2863	locat=compile
2864
2865	exit
2866	else
2867	printf "$striche\n *** compilation finished \n"
2868	fi
2869
2870	fi
2871
2872	fi
2873
2874
2875	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2876	if [[ $local_compile = true ]]
2877	then
2878	cd $HOME
2879	rm -rf $TEMPDIR
2880	locat=local_compile; exit
2881	fi
2882
2883
2884	# BEREITSTELLEN DER INPUT-DATEIEN
2885	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2886	(( i = 0 ))
2887	while (( i < iin ))
2888	do
2889	(( i = i + 1 ))
2890	if (( i == 1 ))
2891	then
2892	printf "\n\n *** providing INPUT-files:\n$striche"
2893	fi
2894
2895
2896	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2897	if [[ "${transin[$i]}" = unavailable ]]
2898	then
2899	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2900	then
2901	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2902	printf "\n is not available!"
2903	else
2904	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2905	printf "\n is not available!"
2906	fi
2907	continue
2908	fi
2909
2910	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2911	files_for_pes=false; datentyp=file
2912	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2913	then
2914	files_for_pes=true; datentyp=directory
2915	actionin[$i]=""
2916	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2917	then
2918	actionin[$i]=""
2919	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2920	then
2921	files_for_pes=true; datentyp=directory
2922	actionin[$i]="ar"
2923	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2924	then
2925	actionin[$i]="ar"
2926	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2927	then
2928	files_for_pes=true; datentyp=directory
2929	actionin[$i]="fl"
2930	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2931	then
2932	actionin[$i]="fl"
2933	fi
2934
2935	if [[ $files_for_pes = true ]]
2936	then
2937	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2938	else
2939	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2940	fi
2941
2942	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2943	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2944	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2945	# SERVER ZU HOLEN
2946	if [[ "${actionin[$i]}" = fl ]]
2947	then
2948	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2949	if [[ $files_for_pes = false ]]
2950	then
2951	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2952	then
2953	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2954	got_tmp[$i]=true
2955	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2956	then
2957	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2958	printf "\n *** trying to use backup copy in \"$WORK\" "
2959	cp $WORK/${frelin[$i]} ${localin[$i]}
2960	else
2961	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2962	printf "\n or \"$tmp_data_catalog\" does not exist!"
2963	printf "\n *** trying to get copy from archive"
2964	actionin[$i]=ar
2965	fi
2966	else
2967	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2968	then
2969	mkdir ${localin[$i]}
2970	cd $tmp_data_catalog/${frelin[$i]}
2971	for file in $(ls *)
2972	do
2973	ln $file $TEMPDIR/${localin[$i]}
2974	done
2975	cd $TEMPDIR
2976	got_tmp[$i]=true
2977	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2978	then
2979	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2980	printf "\n *** trying to use backup copy in \"$WORK\" "
2981	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2982	else
2983	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2984	printf "\n or \"$tmp_data_catalog\" does not exist!"
2985	printf "\n *** trying to get copy from archive"
2986	actionin[$i]=ar
2987	fi
2988	fi
2989	fi
2990
2991
2992	# DATEI LIEGT AUF ARCHIV-SERVER
2993	if [[ "${actionin[$i]}" = ar ]]
2994	then
2995
2996	if [[ $files_for_pes = false ]]
2997	then
2998	printf "\n file will be restored from archive-system ($archive_system)!"
2999	else
3000	printf "\n directory will be restored from archive-system ($archive_system)!"
3001	fi
3002
3003	file_restored=false
3004
3005	if [[ $archive_system = asterix ]]
3006	then
3007	do_stagein=true
3008	(( stagein_anz = 0 ))
3009	while [[ $do_stagein = true ]]
3010	do
3011	if [[ $files_for_pes = false ]]
3012	then
3013	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3014	else
3015	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3016	fi
3017	cat STAGEIN_OUTPUT
3018	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3019	then
3020	file_restored=true
3021	do_stagein=false
3022	else
3023	(( stagein_anz = stagein_anz + 1 ))
3024	if (( stagein_anz == 10 ))
3025	then
3026	printf "\n +++ stagein stoped after 10 tries"
3027	locat=stage
3028	exit
3029	fi
3030	printf "\n +++ restoring from archive failed, trying again:"
3031	sleep 900
3032	fi
3033	done
3034	elif [[ $archive_system = DMF ]]
3035	then
3036	if [[ $files_for_pes = false ]]
3037	then
3038	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3039	locat=DMF
3040	exit
3041	else
3042	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3043	cp -r $ARCHIVE/${frelin[$i]} $PWD
3044	file_restored=true
3045	fi
3046	elif [[ $archive_system = tivoli ]]
3047	then
3048	if [[ $files_for_pes = false ]]
3049	then
3050	if [[ $localhost = lcsgih ]]
3051	then
3052	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3053	else
3054	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3055	fi
3056	else
3057	(( inode = 0 ))
3058	while (( inode < nodes ))
3059	do
3060	if [[ $localhost = lcsgih ]]
3061	then
3062	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3063	else
3064	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3065	fi
3066	(( inode = inode + 1 ))
3067	done
3068	fi
3069	file_restored=true
3070	elif [[ $archive_system = ut ]]
3071	then
3072	if [[ $files_for_pes = false ]]
3073	then
3074	cp $UT/${frelin[$i]} .
3075	else
3076	(( inode = 0 ))
3077	while (( inode < nodes ))
3078	do
3079	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3080	(( inode = inode + 1 ))
3081	done
3082	fi
3083	file_restored=true
3084	else
3085	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3086	locat=rearchive
3087	exit
3088	fi
3089
3090	if [[ $file_restored = true ]]
3091	then
3092
3093	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3094	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3095	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3096	if [[ $files_for_pes = false ]]
3097	then
3098	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3099	else
3100	mkdir $tmp_data_catalog/${frelin[$i]}
3101	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3102	fi
3103	got_tmp[$i]=true
3104
3105	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3106	mv ${frelin[$i]} ${localin[$i]}
3107
3108	fi
3109	fi
3110
3111
3112	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3113	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3114	then
3115
3116	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3117	then
3118
3119	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3120	printf "\n file will be provided for $numprocs processors"
3121	mkdir ${localin[$i]}
3122	ival=$numprocs
3123	(( ii = 0 ))
3124	while (( ii <= ival-1 ))
3125	do
3126	if (( ii < 10 ))
3127	then
3128	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3129	elif (( ii < 100 ))
3130	then
3131	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3132	elif (( ii < 1000 ))
3133	then
3134	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3135	else
3136	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3137	fi
3138	(( ii = ii + 1 ))
3139	done
3140
3141	else
3142
3143	if [[ $files_for_pes = true ]]
3144	then
3145
3146	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3147	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3148	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3149	# PER MOVE UMBENANNT WERDEN
3150	printf "\n providing $numprocs files for the respective processors"
3151	mkdir ${localin[$i]}
3152	if [[ $link_local_input = true ]]
3153	then
3154	printf " using ln -f\n"
3155	cd ${absnamein[$i]}
3156	for file in $(ls *)
3157	do
3158	ln -f $file ${localin[$i]}
3159	done
3160	cd $TEMPDIR
3161	fi
3162	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3163	if [[ ! -f "${localin[$i]}/_0000" ]]
3164	then
3165	if [[ $link_local_input = true ]]
3166	then
3167	printf " ln failed for .../_0000, using cp...\n"
3168	fi
3169	cp -r ${absnamein[$i]}/* ${localin[$i]}
3170	fi
3171
3172	else
3173	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3174	if [[ $link_local_input = true ]]
3175	then
3176	printf " using ln -f\n"
3177	ln -f ${absnamein[$i]} ${localin[$i]}
3178	fi
3179	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3180	if [[ ! -f "${localin[$i]}" ]]
3181	then
3182	if [[ $link_local_input = true ]]
3183	then
3184	printf " ln failed, using cp...\n"
3185	fi
3186	cp ${absnamein[$i]} ${localin[$i]}
3187	fi
3188	fi
3189	fi
3190	fi
3191
3192	done
3193	if (( i != 0 ))
3194	then
3195	printf "\n$striche\n *** all INPUT-files provided \n"
3196	fi
3197
3198
3199	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3200	(( i = 0 ))
3201	while (( i < iic ))
3202	do
3203	(( i = i + 1 ))
3204	if (( i == 1 ))
3205	then
3206	printf "\n\n *** execution of INPUT-commands:\n$striche"
3207	fi
3208	printf "\n >>> ${in_command[$i]}"
3209	eval ${in_command[$i]}
3210	if (( i == iic ))
3211	then
3212	printf "\n$striche\n"
3213	fi
3214	done
3215
3216
3217	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3218	cpurest=${cpumax}.
3219
3220
3221	# START DVR STREAMING SERVER
3222	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3223	then
3224	if [[ "$dvr_server" != "" ]]
3225	then
3226
3227	printf "\n\n *** preparing the dvr streaming server configuration file"
3228
3229	# Check, if a dvr server is already running
3230	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3231	if [[ "$running_dvrserver_id" != "" ]]
3232	then
3233
3234	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3235	printf "\n This server is used instead starting a new one!"
3236	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3237
3238	else
3239
3240	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3241	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3242	then
3243	cp ${PALM_BIN}/.dvrserver.config .
3244
3245	# Entering the BASEDIR, UID and GID into this file
3246	user_id=`id -u`
3247	group_id=`id -g`
3248	# & is needed as seperator, because TEMPDIR contains /
3249	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3250	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3251	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3252	mv .dvrserver.3 .dvrserver.config
3253	rm .dvrserver.1 .dvrserver.2
3254
3255	# Start dvr server in background, get his id and print on terminal
3256	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3257	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3258	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3259	local_dvrserver_running=.TRUE.
3260	else
3261	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3262	printf "\n \"$PALM_BIN\" "
3263	locat=dvr
3264	exit
3265	fi
3266
3267	fi
3268
3269	else
3270	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3271	fi
3272	fi
3273
3274
3275	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3276	# LESEN VON PALM)
3277	cat > ENVPAR << %%END%%
3278	&envpar run_identifier = '$fname', host = '$localhost',
3279	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3280	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3281	maximum_cpu_time_allowed = ${cpumax}.,
3282	revision = '$global_revision',
3283	local_dvrserver_running = $local_dvrserver_running /
3284
3285	%%END%%
3286
3287
3288	# PROGRAMMSTART
3289	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3290	PATH=$PATH:$TEMPDIR
3291
3292	# MPI debug option (argument checking, slows down execution due to increased latency)
3293	if [[ "$mpi_debug" = true ]]
3294	then
3295	export MPI_CHECK_ARGS=1
3296	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3297	fi
3298
3299	if [[ "$totalview" = true ]]
3300	then
3301	printf "\n *** totalview debugger will be used"
3302	tv_opt="-tv"
3303	else
3304	tv_opt=""
3305	fi
3306
3307	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3308	then
3309	if [[ "$ENVIRONMENT" = BATCH ]]
3310	then
3311	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3312	then
3313	printf "\n +++ debug is allowed in interactive mode only"
3314	locat=debug
3315	exit
3316	fi
3317	fi
3318	if [[ $localhost = ibmh ]]
3319	then
3320
3321	# SETUP THE IBM MPI ENVIRONMENT
3322	export MP_SHARED_MEMORY=yes
3323	export AIXTHREADS_SCOPE=S
3324	export OMP_NUM_THREADS=$threads_per_task
3325	export AUTHSTATE=files
3326	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3327
3328	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3329	export MP_ADAPTER_USE=shared
3330	export MP_CPU_USE=multiple
3331	export MP_TIMEOUT=1200
3332
3333	unset MP_TASK_AFFINITY
3334
3335	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3336	#(( ii = 1 ))
3337	#while (( ii <= $numprocs ))
3338	#do
3339	# echo $localhost_realname >> hostfile
3340	# (( ii = ii + 1 ))
3341	#done
3342	#export MP_HOSTFILE=hostfile
3343
3344	if [[ "$LOADLBATCH" = yes ]]
3345	then
3346	totalview poe a.out $ROPTS
3347	else
3348	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3349	export TVDSVRLAUNCHCMD=ssh
3350	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3351	fi
3352	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3353	then
3354	# CURRENTLY NO DEBUGGER ON LCSGI
3355	if [[ $run_coupled_model = true ]]
3356	then
3357	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3358	locat=debug
3359	exit
3360	else
3361	echo "no_coupling" > runfile_atmos
3362	fi
3363	(( ii = $numprocs / $threads_per_task ))
3364	export OMP_NUM_THREADS=$threads_per_task
3365	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3366	if [[ $threads_per_task != 1 ]]
3367	then
3368	printf "\n threads per task: $threads_per_task"
3369	fi
3370	printf "\n\n"
3371	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3372	then
3373	# export MPI_LAUNCH_TIMEOUT=360
3374	if [[ "$totalview" = true ]]
3375	then
3376	printf "\n running totalview debugger"
3377	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3378	else
3379	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3380	fi
3381	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3382	then
3383	# ulimit -s 300000 # A too large stack size causes problems
3384	# export MV2_NUM_PORTS=2
3385	# export MV2_CPU_MAPPING=0:1:2:3
3386	if [[ "$totalview" = true ]]
3387	then
3388	printf "\n running totalview debugger"
3389	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3390	else
3391	mpiexec ./a.out $ROPTS < runfile_atmos
3392	fi
3393	fi
3394	else
3395	printf "\n +++ no debug available on \"$localhost\" "
3396	printf "\n or not implemented in mrun so far"
3397	locat=debug
3398	exit
3399	fi
3400
3401	# end debug mode
3402	else
3403
3404	# normal execution
3405	if [[ -n $numprocs ]]
3406	then
3407	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3408	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3409	then
3410	# SETUP THE IBM MPI ENVIRONMENT
3411	if [[ $host != ibmh && $host != ibmkisti ]]
3412	then
3413	export MP_SHARED_MEMORY=yes
3414	export AIXTHREAD_SCOPE=S
3415	export OMP_NUM_THREADS=$threads_per_task
3416	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3417	export AUTHSTATE=files
3418	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3419	# export MP_PRINTENV=yes
3420
3421	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3422	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3423	export MP_WAIT_MODE=poll
3424	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3425	fi
3426
3427	if [[ $host = ibmkisti ]]
3428	then
3429	export LANG=en_US
3430	export MP_SHARED_MEMORY=yes
3431	if [[ $threads_per_task = 1 ]]
3432	then
3433	export MP_SINGLE_THREAD=yes
3434	export MEMORY_AFFINITY=MCM
3435	else
3436	export OMP_NUM_THREADS=$threads_per_task
3437	fi
3438	fi
3439
3440	if [[ "$LOADLBATCH" = yes ]]
3441	then
3442	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3443	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3444	then
3445	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3446	else
3447	if [[ $run_coupled_model = false ]]
3448	then
3449	if [[ "$ocean_file_appendix" = true ]]
3450	then
3451	echo "precursor_ocean" > runfile_atmos
3452	else
3453	echo "precursor_atmos" > runfile_atmos
3454	fi
3455	else
3456	(( iia = $numprocs_atmos / $threads_per_task ))
3457	(( iio = $numprocs_ocean / $threads_per_task ))
3458	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3459	printf "\n using $coupled_mode coupling"
3460	printf "\n\n"
3461	echo "coupled_run $iia $iio" > runfile_atmos
3462	fi
3463	poe ./a.out $ROPTS < runfile_atmos
3464	fi
3465	else
3466	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3467	then
3468	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3469	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3470	then
3471	if [[ -f $hostfile ]]
3472	then
3473	cp $hostfile hostfile
3474	else
3475	(( ii = 1 ))
3476	while (( ii <= $numprocs ))
3477	do
3478	echo $localhost_realname >> hostfile
3479	(( ii = ii + 1 ))
3480	done
3481	fi
3482	export MP_HOSTFILE=hostfile
3483	if [[ $run_coupled_model = false ]]
3484	then
3485	if [[ "$ocean_file_appendix" = true ]]
3486	then
3487	echo "precursor_ocean" > runfile_atmos
3488	else
3489	echo "precursor_atmos" > runfile_atmos
3490	fi
3491	else
3492	(( iia = $numprocs_atmos / $threads_per_task ))
3493	(( iio = $numprocs_ocean / $threads_per_task ))
3494	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3495	printf "\n using $coupled_mode coupling"
3496	printf "\n\n"
3497	echo "coupled_run $iia $iio" > runfile_atmos
3498	fi
3499	if [[ $localhost = ibmy ]]
3500	then
3501	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3502	else
3503	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3504	fi
3505
3506	else
3507	if [[ "$host_file" = "" ]]
3508	then
3509	printf "\n +++ no hostfile given in configuration file"
3510	locat=config_file
3511	exit
3512	else
3513	eval host_file=$host_file
3514	fi
3515	export MP_HOSTFILE=$host_file
3516	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3517	fi
3518	fi
3519	elif [[ $host = nech \|\| $host = necriam ]]
3520	then
3521	(( ii = nodes ))
3522	if [[ $ii = 1 ]]
3523	then
3524	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3525	export MPIPROGINF=YES
3526	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3527	echo "*** execution on single node with mpirun"
3528	mpirun -np $numprocs ./a.out $ROPTS
3529	else
3530	(( i = 0 ))
3531	while (( i < ii ))
3532	do
3533	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3534	(( i = i + 1 ))
3535	done
3536
3537	echo "#!/bin/sh" > mpi_exec_shell
3538	echo " " >> mpi_exec_shell
3539	echo "set -u" >> mpi_exec_shell
3540	echo "F_ERRCNT=0" >> mpi_exec_shell
3541	echo "MPIPROGINV=YES" >> mpi_exec_shell
3542	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3543	echo "cpurest=$cpurest" >> mpi_exec_shell
3544	echo "fname=$fname" >> mpi_exec_shell
3545	echo "localhost=$localhost" >> mpi_exec_shell
3546	echo "return_addres=$return_addres" >> mpi_exec_shell
3547	echo "return_username=$return_username" >> mpi_exec_shell
3548	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3549	echo "write_binary=$write_binary" >> mpi_exec_shell
3550	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3551	echo " " >> mpi_exec_shell
3552	echo "export F_ERRCNT" >> mpi_exec_shell
3553	echo "export MPIPROGINV" >> mpi_exec_shell
3554	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3555	echo "export cpurest" >> mpi_exec_shell
3556	echo "export fname" >> mpi_exec_shell
3557	echo "export localhost" >> mpi_exec_shell
3558	echo "export return_addres" >> mpi_exec_shell
3559	echo "export return_username" >> mpi_exec_shell
3560	echo "export tasks_per_node" >> mpi_exec_shell
3561	echo "export write_binary" >> mpi_exec_shell
3562	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3563	echo " " >> mpi_exec_shell
3564	echo "exec ./a.out" >> mpi_exec_shell
3565
3566	chmod u+x mpi_exec_shell
3567	export MPIPROGINF=YES
3568	mpirun -f multinode_config &
3569	wait
3570
3571	fi
3572	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3573	then
3574
3575	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3576	# DOES NOT EXIST
3577	if [[ $host != lccrayf && $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3578	then
3579	if [[ -f $hostfile ]]
3580	then
3581	cp $hostfile hostfile
3582	(( ii = $numprocs / $threads_per_task ))
3583	else
3584	(( ii = 1 ))
3585	while (( ii <= $numprocs / $threads_per_task ))
3586	do
3587	echo $localhost_realname >> hostfile
3588	(( ii = ii + 1 ))
3589	done
3590	fi
3591	eval zeile=\"`head -n $ii hostfile`\"
3592	printf "\n *** running on: $zeile"
3593	fi
3594
3595	(( ii = $numprocs / $threads_per_task ))
3596	export OMP_NUM_THREADS=$threads_per_task
3597	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3598	if [[ $threads_per_task != 1 ]]
3599	then
3600	# increase stack size to unlimited, because large runs
3601	# may abort otherwise
3602	ulimit -Ss unlimited
3603	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3604	fi
3605	if [[ $run_coupled_model = false ]]
3606	then
3607	if [[ "$ocean_file_appendix" = true ]]
3608	then
3609	echo "precursor_ocean" > runfile_atmos
3610	else
3611	echo "precursor_atmos" > runfile_atmos
3612	fi
3613	printf "\n\n"
3614	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3615	then
3616	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3617	then
3618	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3619	# export MPI_DSM_DISTRIBUTE=1
3620	# MPI_DSM_CPULIST: pin MPI processes to cores
3621	if [[ $use_openmp = false ]]
3622	then
3623	if [[ "$sgi_feature" = ice2 ]]
3624	then
3625	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3626	else
3627	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3628	fi
3629	else
3630	unset MPI_DSM_CPULIST
3631	fi
3632	# MPI_IB_RAILS: use both IB rails on ICE2
3633	export MPI_BUFS_PER_HOST=512
3634	export MPI_IB_RAILS=2
3635	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3636	export MPI_CONNECTIONS_THRESHOLD=8192
3637	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3638	export MPI_TYPE_DEPTH=20
3639	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3640	export MPI_GROUP_MAX=64
3641	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3642	if [[ $use_openmp = true ]]
3643	then
3644	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3645	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3646	else
3647	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3648	fi
3649
3650	# next is test for openmp usage
3651	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3652	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3653	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3654	then
3655	export MV2_NUM_PORTS=2
3656	# The default setting of MV2_CPU_MAPPING gives best results
3657	# export MV2_ENABLE_AFFINITY=1
3658	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3659	# if [[ "$sgi_feature" = ice2 ]]
3660	# then
3661	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3662	# else
3663	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3664	# fi
3665	if [[ $use_openmp = true ]]
3666	then
3667	unset MV2_CPU_MAPPING
3668	export MV2_ENABLE_AFFINITY=0
3669	fi
3670	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3671	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3672	if [[ $use_openmp = true ]]
3673	then
3674	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3675	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3676	else
3677	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3678	fi
3679	elif [[ "$mpilib" = impi ]]
3680	then
3681	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3682	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3683	fi
3684	elif [[ $host = lccrayf ]]
3685	then
3686	aprun -n $ii -N $tasks_per_node -m ${memory}M a.out $ROPTS < runfile_atmos
3687	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3688	then
3689	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3690	elif [[ $host = lcflow ]]
3691	then
3692	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3693	elif [[ $host = lcsb ]]
3694	then
3695	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3696	elif [[ $host = lckiaps ]]
3697	then
3698	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3699	elif [[ $host = lckyu* ]]
3700	then
3701	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3702	else
3703	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3704	fi
3705	else
3706
3707	# currently there is no full MPI-2 support on ICE and XT4
3708	(( iia = $numprocs_atmos / $threads_per_task ))
3709	(( iio = $numprocs_ocean / $threads_per_task ))
3710	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3711	printf "\n using $coupled_mode coupling"
3712	printf "\n\n"
3713
3714	if [[ $coupled_mode = "mpi2" ]]
3715	then
3716	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3717	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3718	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3719	then
3720
3721	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3722	then
3723	# export MPI_LAUNCH_TIMEOUT=360
3724	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3725	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3726	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3727	then
3728	# ulimit -s 300000 # A too large stack size causes problems
3729	# export MV2_NUM_PORTS=2
3730	# export MV2_CPU_MAPPING=0:1:2:3
3731	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3732	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3733	fi
3734
3735	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3736	then
3737
3738	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3739	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3740
3741	else
3742	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3743	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3744	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3745	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3746	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3747	fi
3748	wait
3749
3750	else
3751
3752	echo "coupled_run $iia $iio" > runfile_atmos
3753	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3754	then
3755
3756	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3757	then
3758	# export MPI_LAUNCH_TIMEOUT=360
3759	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3760	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3761	then
3762	# ulimit -s 300000 # A too large stack size causes problems
3763	# export MV2_NUM_PORTS=2
3764	# export MV2_CPU_MAPPING=0:1:2:3
3765	mpiexec ./a.out $ROPTS < runfile_atmos
3766	fi
3767
3768	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3769	then
3770
3771	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3772
3773	elif [[ $host = lck \|\| $host = lckordi ]]
3774	then
3775
3776	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3777
3778	elif [[ $host = lckyu* ]]
3779	then
3780
3781	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3782
3783	fi
3784	wait
3785	fi
3786
3787	fi
3788	elif [[ $host = lckyoto ]]
3789	then
3790	set -xv
3791	export P4_RSHCOMMAND=plesh
3792	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3793	if [[ "$ENVIRONMENT" = BATCH ]]
3794	then
3795	if [[ "$cond2" = fujitsu ]]
3796	then
3797	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3798	elif [[ "cond2" = pgi ]]
3799	then
3800	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3801	else
3802	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3803	fi
3804	else
3805	if [[ "$cond2" = "" ]]
3806	then
3807	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3808	else
3809	mpirun -np $numprocs ./a.out $ROPTS
3810	fi
3811	fi
3812	set +xv
3813	elif [[ $host = lctit ]]
3814	then
3815	export OMP_NUM_THREADS=$threads_per_task
3816	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3817	if [[ "$threads_per_task" != 1 ]]
3818	then
3819	export MV2_ENABLE_AFFINITY=0
3820	fi
3821	echo "----- PBS_NODEFILE content:"
3822	cat $PBS_NODEFILE
3823	echo "-----"
3824	(( ii = $numprocs / $threads_per_task ))
3825	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3826	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3827	else
3828	mpprun -n $numprocs a.out $ROPTS
3829	fi
3830	[[ $? != 0 ]] && execution_error=true
3831
3832
3833	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3834	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3835	then
3836	apprentice
3837	fi
3838	else
3839	a.out $ROPTS
3840	fi
3841	fi
3842	if [[ $? != 0 \|\| $execution_error = true ]]
3843	then
3844
3845	# ABBRUCH BEI LAUFZEITFEHLER
3846	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3847	printf "\n +++ runtime error occured"
3848	locat=execution
3849	exit
3850	else
3851	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3852	printf "\n$striche\n *** execution finished \n"
3853
3854	# Stop the dvr streaming server and process the dvr output in order
3855	# to create dvrs- and html-files containing all streams
3856	if [[ "$dvrserver_id" != "" ]]
3857	then
3858	kill $dvrserver_id
3859	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3860
3861	# If there is a directory, data have been output by the
3862	# streaming server. Otherwise, user has chosen dvrp_output=local
3863	if [[ -d DATA_DVR ]]
3864	then
3865
3866	# Add the current dvr configuration file to the dvr output
3867	# directory
3868	cp .dvrserver.config DATA_DVR
3869
3870	# Process the dvr output (option -s for also generating
3871	# sequence mode data)
3872	process_dvr_output -d DATA_DVR -f $fname -s
3873
3874	else
3875
3876	# Process the local output
3877	process_dvr_output -l -d DATA_DVR -f $fname
3878
3879	fi
3880
3881	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3882	then
3883
3884	# Process dvr output generated in local mode (dvrp_output=local)
3885	process_dvr_output -l -d DATA_DVR -f $fname
3886
3887	fi
3888	fi
3889
3890
3891
3892	# Call of combine_plot_fields in order to merge single files written
3893	# by each PE into one file.
3894	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3895	then
3896	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3897	printf "\n 2d- and/or 3d-data may be incomplete!"
3898	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3899	elif [[ "$combine_plot_fields" == true ]]
3900	then
3901	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3902	combine_plot_fields${block}.x
3903	else
3904	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3905	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3906	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3907	fi
3908
3909
3910
3911	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3912	(( i = 0 ))
3913	while (( i < ioc ))
3914	do
3915	(( i = i + 1 ))
3916	if (( i == 1 ))
3917	then
3918	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3919	fi
3920	printf "\n >>> ${out_command[$i]}"
3921	eval ${out_command[$i]}
3922	if (( i == ioc ))
3923	then
3924	printf "\n$striche\n"
3925	fi
3926	done
3927
3928
3929	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3930	if [[ $do_trace = true ]]
3931	then
3932	printf "\n\n"
3933	ls -al
3934	fi
3935
3936
3937
3938	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3939	(( i = 0 ))
3940	while (( i < iout ))
3941	do
3942	(( i = i + 1 ))
3943	if (( i == 1 ))
3944	then
3945	printf "\n\n *** saving OUTPUT-files:\n$striche"
3946	fi
3947
3948	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3949	files_for_pes=false; filetyp=file
3950	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3951	then
3952	files_for_pes=true; filetyp=directory
3953	actionout[$i]=""
3954	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3955	then
3956	actionout[$i]=""
3957	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3958	then
3959	files_for_pes=true; filetyp=directory
3960	actionout[$i]="ar"
3961	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3962	then
3963	actionout[$i]="ar"
3964	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3965	then
3966	files_for_pes=true; filetyp=directory
3967	actionout[$i]="fl"
3968	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3969	then
3970	actionout[$i]="fl"
3971	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3972	then
3973	files_for_pes=true; filetyp=directory
3974	actionout[$i]="tr"
3975	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3976	then
3977	actionout[$i]="tr"
3978	fi
3979
3980	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3981	then
3982	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3983	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3984	then
3985	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3986	else
3987
3988
3989	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3990	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3991	# REMOTE-RECHNUNGEN
3992	if [[ "${actionout[$i]}" = tr ]]
3993	then
3994	if [[ $localhost != $fromhost ]]
3995	then
3996	if [[ $files_for_pes = false ]]
3997	then
3998	cps=""
3999	cst=""
4000	else
4001	cps=-c
4002	cst="/"
4003	fi
4004	if [[ $localhost = nech ]]
4005	then
4006
4007	# TRANSFER IN EIGENSTAENDIGEM JOB
4008	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4009	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4010	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4011	if [[ $files_for_pes = false ]]
4012	then
4013	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4014	else
4015	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4016	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4017	fi
4018
4019	echo "set -x" > transfer_${localout[$i]}
4020	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4021
4022	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4023	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4024	printf "\n or higher cycle\n"
4025	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4026
4027	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4028
4029	if [[ $localhost = nech ]]
4030	then
4031	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4032	else
4033	if [[ "$LOGNAME" = b323013 ]]
4034	then
4035	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4036	else
4037	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4038	fi
4039	fi
4040
4041	else
4042
4043	# TRANSFER INNERHALB DIESES JOBS
4044	transfer_failed=false
4045	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4046	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4047	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4048	[[ $? != 0 ]] && transfer_failed=true
4049
4050	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4051	# LOKALER MASCHINE ANLEGEN
4052	if [[ $transfer_failed = true ]]
4053	then
4054	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4055	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4056
4057	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4058	# ANLEGEN.
4059	eval local_catalog=${pathout[$i]}
4060	if [[ ! -d $local_catalog ]]
4061	then
4062	printf " *** local directory does not exist. Trying to create:\n"
4063	printf " $local_catalog \n"
4064	mkdir -p $local_catalog
4065	fi
4066	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4067	transfer_problems=true
4068	fi
4069	fi
4070	else
4071
4072	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4073	actionout[$i]=""
4074	fi
4075	fi
4076
4077
4078	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4079	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4080	# REMOTE-RECHNUNGEN
4081	if [[ "${actionout[$i]}" = tra ]]
4082	then
4083	if [[ $localhost != $fromhost ]]
4084	then
4085	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4086	then
4087
4088	# TRANSFER IN EIGENSTAENDIGEM JOB
4089	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4090	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4091	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4092	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4093
4094	echo "set -x" > transfer_${localout[$i]}
4095	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4096
4097	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4098	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4099	printf "\n or higher cycle\n"
4100	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4101
4102	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4103
4104	if [[ $localhost = nech ]]
4105	then
4106	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4107	else
4108	if [[ $LOGNAME = b323013 ]]
4109	then
4110	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4111	else
4112	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4113	fi
4114	fi
4115
4116	else
4117
4118	# TRANSFER INNERHALB DIESES JOBS
4119	transfer_failed=false
4120	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4121	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4122	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4123	[[ $? != 0 ]] && transfer_failed=true
4124
4125	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4126	# LOKALER MASCHINE ANLEGEN
4127	if [[ $transfer_failed = true ]]
4128	then
4129	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4130	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4131
4132	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4133	# ANLEGEN
4134	eval local_catalog=${pathout[$i]}
4135	if [[ ! -d $local_catalog ]]
4136	then
4137	printf " *** local directory does not exist. Trying to create:\n"
4138	printf " $local_catalog \n"
4139	mkdir -p $local_catalog
4140	fi
4141
4142	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4143	transfer_problems=true
4144	fi
4145	fi
4146	else
4147
4148	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4149	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4150	actionout[$i]=a
4151	fi
4152	fi
4153
4154
4155	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4156	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4157	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4158	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4159	if [[ "${actionout[$i]}" = fl ]]
4160	then
4161	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4162	chmod g+rx $tmp_data_catalog
4163	if [[ $files_for_pes = false ]]
4164	then
4165	printf "\n >>> OUTPUT: ${localout[$i]} to"
4166	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4167	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4168	else
4169	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4170	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4171	mkdir $tmp_data_catalog/${frelout[$i]}
4172	cd ${localout[$i]}
4173	for file in $(ls *)
4174	do
4175	ln -f $file $tmp_data_catalog/${frelout[$i]}
4176	done
4177	cd $TEMPDIR
4178	fi
4179
4180
4181	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4182	if [[ $store_on_archive_system = true ]]
4183	then
4184
4185	if [[ $archive_system = asterix ]]
4186	then
4187	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4188	if [[ $files_for_pes = false ]]
4189	then
4190	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4191	else
4192	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4193	fi
4194	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4195	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4196	echo "then" >> archive_${frelout[$i]}
4197	echo " do_stageout=false" >> archive_${frelout[$i]}
4198	echo "else" >> archive_${frelout[$i]}
4199	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4200	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4201	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4202	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4203	if [[ $files_for_pes = false ]]
4204	then
4205	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4206	else
4207	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4208	fi
4209	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4210	echo "fi" >> archive_${frelout[$i]}
4211	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4212	elif [[ $archive_system = DMF ]]
4213	then
4214	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4215	if [[ $files_for_pes = false ]]
4216	then
4217	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4218	locat=DMF
4219	exit
4220	else
4221	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4222	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4223	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4224	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4225	fi
4226	elif [[ $archive_system = tivoli ]]
4227	then
4228	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4229	if [[ $files_for_pes = false ]]
4230	then
4231	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4232	echo "set -x" >> archive_${frelout[$i]}
4233	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4234	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4235	else
4236
4237	echo "set -x" >> archive_${frelout[$i]}
4238	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4239	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4240	cd $tmp_data_catalog
4241	all_files=`ls -1 ${frelout[$i]}/*`
4242	cd - > /dev/null
4243	(( inode = 0 ))
4244	(( tp1 = tasks_per_node + 1 ))
4245	while (( inode < nodes ))
4246	do
4247	# echo "*** all_files = \"$all_files\" "
4248	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4249	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4250	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4251	# echo "*** files = \"$files\" "
4252	# echo "*** all_files = \"$all_files\" "
4253	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4254	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4255	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4256	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4257	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4258	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4259	(( inode = inode + 1 ))
4260	done
4261	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4262	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4263	fi
4264	elif [[ $archive_system = ut ]]
4265	then
4266	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4267	if [[ $files_for_pes = false ]]
4268	then
4269	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4270	echo "set -x" >> archive_${frelout[$i]}
4271	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4272	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4273	else
4274
4275	echo "set -x" >> archive_${frelout[$i]}
4276	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4277	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4278	cd $tmp_data_catalog
4279	all_files=`ls -1 ${frelout[$i]}/*`
4280	cd - > /dev/null
4281	(( inode = 0 ))
4282	(( tp1 = tasks_per_node + 1 ))
4283	while (( inode < nodes ))
4284	do
4285	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4286	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4287	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4288	(( inode = inode + 1 ))
4289	done
4290	fi
4291	elif [[ $archive_system = none ]]
4292	then
4293	printf " +++ archiving on $localhost not available!\n"
4294	fi
4295
4296	if [[ $archive_system != none ]]
4297	then
4298	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4299	then
4300	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4301	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4302	elif [[ $localhost = nech ]]
4303	then
4304	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4305	fi
4306	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4307	fi
4308	else
4309	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4310	fi
4311
4312
4313	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4314	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4315	if [[ $files_for_pes = false ]]
4316	then
4317	cat /dev/null > ${pathout[$i]}
4318	else
4319	mkdir -p ${pathout[$i]}
4320	fi
4321
4322	fi
4323
4324
4325	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4326	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4327	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4328	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4329	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4330	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4331	if [[ "${actionout[$i]}" = ar ]]
4332	then
4333	if [[ $files_for_pes = false ]]
4334	then
4335	printf "\n >>> OUTPUT: ${localout[$i]} to"
4336	printf "\n ${pathout[$i]}"
4337	printf "\n File will be copied to archive-system ($archive_system) !\n"
4338	else
4339	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4340	printf "\n ${pathout[$i]}"
4341	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4342	fi
4343	mv ${localout[$i]} ${frelout[$i]}
4344
4345	file_saved=false
4346
4347	if [[ $archive_system = asterix ]]
4348	then
4349	do_stageout=true
4350	(( stageout_anz = 0 ))
4351	while [[ $do_stageout = true ]]
4352	do
4353	if [[ $files_for_pes = false ]]
4354	then
4355	stageout ${frelout[$i]} > STAGE_OUTPUT
4356	else
4357	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4358	fi
4359	cat STAGE_OUTPUT
4360	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4361	then
4362	file_saved=true
4363	do_stageout=false
4364	else
4365	if [[ $files_for_pes = false ]]
4366	then
4367	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4368	else
4369	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4370	fi
4371	(( stageout_anz = stageout_anz + 1 ))
4372	if (( stageout_anz == 10 ))
4373	then
4374	printf "\n +++ stoped after 10 unsuccessful tries!"
4375	archive_save=false
4376	do_stageout=false
4377	else
4378	printf "\n *** new try to store on archive after 15 min:"
4379	sleep 900
4380	fi
4381	fi
4382	done
4383	elif [[ $archive_system = DMF ]]
4384	then
4385	if [[ $files_for_pes = false ]]
4386	then
4387	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4388	locat=DMF
4389	exit
4390	else
4391	rm -rf $ARCHIVE/${frelout[$i]}
4392	cp -r ${frelout[$i]} $ARCHIVE
4393	fi
4394	file_saved=true
4395	elif [[ $archive_system = tivoli ]]
4396	then
4397	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4398	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4399	# GELEGT WERDEN
4400	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4401	chmod g+rx $tmp_data_catalog
4402	if [[ $files_for_pes = false ]]
4403	then
4404	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4405	else
4406	mkdir $tmp_data_catalog/${frelout[$i]}
4407	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4408	fi
4409
4410	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4411	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4412	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4413	if [[ $files_for_pes = false ]]
4414	then
4415	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4416	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4417	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4418	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4419	else
4420	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4421	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4422	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4423	fi
4424
4425	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4426	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4427	file_saved=true
4428
4429	elif [[ $archive_system = ut ]]
4430	then
4431	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4432	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4433	# GELEGT WERDEN
4434	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4435	chmod g+rx $tmp_data_catalog
4436	if [[ $files_for_pes = false ]]
4437	then
4438	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4439	else
4440	mkdir $tmp_data_catalog/${frelout[$i]}
4441	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4442	fi
4443
4444	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4445	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4446	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4447	if [[ $files_for_pes = false ]]
4448	then
4449	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4450	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4451	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4452	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4453	else
4454	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4455	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4456	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4457	fi
4458
4459	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4460	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4461	file_saved=true
4462
4463	else
4464	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4465	archive_save=false
4466	fi
4467	if [[ $file_saved = true ]]
4468	then
4469	if [[ $files_for_pes = false ]]
4470	then
4471	cat /dev/null > ${pathout[$i]}
4472	else
4473	mkdir -p ${pathout[$i]}
4474	fi
4475	fi
4476	fi
4477
4478	# APPEND AUF LOKALER MASCHINE
4479	if [[ "${actionout[$i]}" = "a" ]]
4480	then
4481	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4482	then
4483	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4484	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4485	else
4486	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4487	cat ${localout[$i]} >> ${pathout[$i]}
4488	fi
4489	fi
4490
4491	# KOPIEREN AUF LOKALER MASCHINE
4492	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4493	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4494	then
4495
4496	# KOPIEREN AUF EINPROZESSORMASCHINE
4497	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4498	then
4499	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4500	if [[ $link_local_output = true ]]
4501	then
4502	printf " using ln -f\n"
4503	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4504	fi
4505	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4506	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4507	then
4508	if [[ $link_local_output = true ]]
4509	then
4510	printf " ln failed, using cp...\n"
4511	fi
4512	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4513	fi
4514	else
4515	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4516	if [[ $link_local_output = true ]]
4517	then
4518	printf " using ln -f\n"
4519	ln -f ${localout[$i]} ${pathout[$i]}
4520	fi
4521	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4522	if [[ ! -f "${pathout[$i]}" ]]
4523	then
4524	if [[ $link_local_output = true ]]
4525	then
4526	printf " ln failed, using cp...\n"
4527	fi
4528	cp ${localout[$i]} ${pathout[$i]}
4529	fi
4530	fi
4531
4532	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4533	then
4534
4535	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4536	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4537	# WIRD DANN KOPIERT
4538	# PER MOVE UMBENANNT WERDEN
4539	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4540	if [[ $link_local_output = true ]]
4541	then
4542	printf " using ln -f\n"
4543	mkdir ${pathout[$i]}
4544	cd ${localout[$i]}
4545	for file in $(ls *)
4546	do
4547	ln -f $file ${pathout[$i]}
4548	done
4549	cd $TEMPDIR
4550	fi
4551	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4552	if [[ ! -f "${pathout[$i]}/_0000" ]]
4553	then
4554	if [[ $link_local_output = true ]]
4555	then
4556	printf " ln failed for .../_0000, using cp...\n"
4557	fi
4558	cp -r ${localout[$i]} ${pathout[$i]}
4559	fi
4560
4561	fi
4562	fi
4563	done
4564	if (( i != 0 ))
4565	then
4566	if [[ $transfer_problems = true ]]
4567	then
4568	printf "\n$striche\n *** OUTPUT-files saved"
4569	printf "\n +++ WARNING: some data transfers failed! \n"
4570	else
4571	printf "\n$striche\n *** all OUTPUT-files saved \n"
4572	fi
4573	fi
4574
4575
4576	# EVENTUELL FOLGEJOB STARTEN
4577	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4578	if [[ -f CONTINUE_RUN ]]
4579	then
4580
4581	if [[ $archive_save = true ]]
4582	then
4583
4584	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4585	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4586	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4587	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4588	# HANDEN
4589	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4590	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4591	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4592	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4593	then
4594	mc=`echo $mc \| sed 's/#/f/g'`
4595	fi
4596
4597
4598	# JOB STARTEN
4599	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4600	echo " $mc"
4601	printf "\n$striche\n"
4602	if [[ $localhost != $fromhost ]]
4603	then
4604
4605	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4606	then
4607	echo "*** ssh will be used to initiate restart-runs!"
4608	echo " return_addres=\"$return_addres\" "
4609	echo " return_username=\"$return_username\" "
4610	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4611	then
4612	if [[ $localhost = ibmh ]]
4613	then
4614	ssh $SSH_PORTOPT $usern@136.172.40.15 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4615	else
4616	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4617	fi
4618	else
4619	if [[ $localhost = ibmkisti ]]
4620	then
4621	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4622	else
4623	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4624	fi
4625	fi
4626	else
4627	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4628	locat=restart; exit
4629	fi
4630
4631	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4632	# DER AKTUELLE JOB ENDET
4633	if [[ $queue = special1q ]]
4634	then
4635	sleep 120
4636	else
4637	sleep 30
4638	fi
4639
4640	else
4641
4642	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4643	# RUFEN WERDEN, AUSSER AUF lcfimm
4644	cd $LOCAL_PWD
4645	if [[ $localhost = lcfimm ]]
4646	then
4647	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4648	elif [[ $localhost = lckyuh ]]
4649	then
4650	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4651	printf "\n please restart job manually using command:\n"
4652	printf "\n \"$mc\" "
4653	else
4654	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4655	fi
4656	cd - > /dev/null
4657	fi
4658	if [[ $localhost = lckyuh ]]
4659	then
4660	printf "\n$striche\n *** restart-run to be initiated manually\n"
4661	else
4662	printf "\n$striche\n *** restart-run initiated \n"
4663	fi
4664
4665
4666	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4667	# GEHOLT WORDEN SIND, LOESCHEN
4668	(( i = 0 ))
4669	while (( i < iin ))
4670	do
4671	(( i = i + 1 ))
4672	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4673	then
4674	rm -r $tmp_data_catalog/${frelin[$i]}
4675	fi
4676	done
4677
4678	else
4679
4680	printf "\n +++ no restart-run possible, since errors occured"
4681	printf "\n during the archive process"
4682	fi
4683
4684	fi
4685
4686
4687
4688	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4689	if [[ "$email_notification" != "none" ]]
4690	then
4691
4692	if [[ $localhost != $fromhost ]]
4693	then
4694	if [[ -f CONTINUE_RUN ]]
4695	then
4696	echo "PALM restart run necessary" > email_text
4697	echo "description header of actual run:" >> email_text
4698	cat CONTINUE_RUN >> email_text
4699	echo "mrun-command to restart:" >> email_text
4700	echo "$mc" >> email_text
4701	else
4702	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4703	fi
4704	mail $email_notification < email_text
4705	printf "\n *** email notification sent to \"$email_notification\" "
4706	fi
4707	fi
4708
4709
4710
4711	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4712	cd $HOME
4713	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4714
4715	else
4716
4717
4718	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4719	# CHENDE AKTIONEN DURCHGEFUEHRT
4720
4721	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4722	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4723	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4724	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4725	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4726	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4727	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4728	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4729	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4730	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4731	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4732	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4733	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4734	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4735	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4736	if [[ $use_openmp = true ]]
4737	then
4738	mrun_com=${mrun_com}" -O $threads_per_task"
4739	fi
4740	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4741	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4742	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4743	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4744	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4745	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4746	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4747	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4748	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4749	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4750	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4751	if [[ $do_remote = true ]]
4752	then
4753	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4754	fi
4755
4756
4757	# create executable for batch job
4758	if [[ $create_executable_for_batch = true && $restart_run != true ]]
4759	then
4760
4761	printf "\n *** creating the executable for batch job\n"
4762
4763	# method only works for batch jobs on local hosts
4764	if [[ $host != $localhost ]]
4765	then
4766	printf "\n +++ creation of executables is only allowed for batch jobs on local hosts."
4767	printf "\n Please set create_executable_for_batch = false in the config-file.\n"
4768	locat=create_executable; exit
4769	fi
4770
4771	mkdir $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4772	cd $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4773
4774	cp $make_depository .
4775	tar -xf $make_depository > /dev/null 2>&1
4776	cp ../* . > /dev/null 2>&1
4777
4778	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
4779
4780	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
4781	then
4782	printf "\n +++ error occured while compiling or linking"
4783	locat=compile
4784	exit
4785	fi
4786
4787	mv a.out ..
4788	cd - > /dev/null 2>&1
4789	rm -rf $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4790
4791	printf " *** executable created in \"$working_directory/SOURCES_FOR_RUN_${fname}\"\n "
4792
4793	fi
4794
4795
4796	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4797	jobfile=jobfile.$RANDOM
4798
4799
4800	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4801	echo "mkdir $TEMPDIR" >> $jobfile
4802	echo "cd $TEMPDIR" >> $jobfile
4803
4804
4805	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4806	if [[ $do_trace = true ]]
4807	then
4808	echo "set -x" >> $jobfile
4809	else
4810	echo "set +vx" >> $jobfile
4811	fi
4812
4813
4814	# initialize the environment and load modules
4815	if [[ "$init_cmds" != "" ]]
4816	then
4817	echo "$init_cmds" >> $jobfile
4818	fi
4819	if [[ "$module_calls" != "" ]]
4820	then
4821	echo "$module_calls" >> $jobfile
4822	fi
4823
4824
4825	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4826	# DATEI FUER DEN JOB
4827	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti \|\| $host = lccrayf ]]
4828	then
4829
4830	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4831	# KOPIEREN
4832	if [[ $restart_run != true ]]
4833	then
4834	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4835	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4836	fi
4837
4838	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4839	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4840	echo "set -x" >> $jobfile
4841	if [[ $host = $localhost ]]
4842	then
4843
4844	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
4845	# FILES ON CRAY XC30 SYSTEMS (CSC HELSINKI), rsync IS USED INSTEAD
4846	echo "rsync -ae -t $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4847
4848	else
4849	if [[ $host != ibmkisti ]]
4850	then
4851	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4852	else
4853	# on KISTI's IBM firewall is only opened on interactive node
4854	echo "localdir=\`pwd\`" >> $jobfile
4855	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4856	fi
4857	fi
4858	echo "export SOURCES_COMPLETE=true" >> $jobfile
4859
4860	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4861	# ARBEITSVERZEICHNIS VERSCHIEBEN
4862	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4863	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4864	echo "chmod u+rwx $mrun_script_name" >> $jobfile
4865	echo "execute_mrun=true" >> $jobfile
4866	echo " " >> $jobfile
4867
4868	else
4869
4870	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4871	# SOWIE GEGEBENENFALLS DES MAKEFILES
4872	if [[ $do_compile = true ]]
4873	then
4874
4875	source_catalog=SOURCES_FOR_RUN_$fname
4876
4877	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4878	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4879	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4880	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4881	echo "export SOURCES_COMPLETE=true" >> $jobfile
4882	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4883
4884	for filename in $source_list
4885	do
4886	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4887	echo "cat > $filename << \"%END%\"" >> $jobfile
4888	cat $source_catalog/$filename >> $jobfile
4889	echo " " >> $jobfile
4890	echo "%END%" >> $jobfile
4891	echo " " >> $jobfile
4892	done
4893
4894	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4895	echo "cat > Makefile << \"%END%\"" >> $jobfile
4896	cat $source_catalog/Makefile >> $jobfile
4897	echo " " >> $jobfile
4898	echo "%END%" >> $jobfile
4899	echo " " >> $jobfile
4900
4901	echo "cd - > /dev/null" >> $jobfile
4902
4903	fi
4904
4905
4906	# ABSPEICHERN DER KONFIGURATIONSDATEI
4907	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4908	# Lines with #$ coming from the svn keyword substitution are
4909	# removed from the config file in order to avoid problems
4910	# with the SGE batch system
4911	echo "cat > $config_file << \"%END%\"" >> $jobfile
4912	if [[ $host = lckyuh ]]
4913	then
4914	# no cross compiler on compute node
4915	sed 's/frtpx/frt/g' $config_file >> $jobfile
4916	else
4917	sed 's/#$.*//g' $config_file >> $jobfile
4918	fi
4919	echo "%END%" >> $jobfile
4920	echo " " >> $jobfile
4921
4922
4923	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4924	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4925	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4926	if [[ $host = lckyuh ]]
4927	then
4928	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
4929	else
4930	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4931	fi
4932	echo "%END%" >> $jobfile
4933	echo "chmod u+x $mrun_script_name" >> $jobfile
4934	echo "execute_mrun=true" >> $jobfile
4935	echo " " >> $jobfile
4936
4937	fi
4938
4939
4940	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4941	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4942	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4943	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4944	if [[ $do_remote = true ]]
4945	then
4946	(( i = 0 ))
4947	while (( i < iin ))
4948	do
4949	(( i = i + 1 ))
4950	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4951	if [[ "${transin[$i]}" = job ]]
4952	then
4953	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4954	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4955	echo " " >> $jobfile
4956	echo "%END%" >> $jobfile
4957	else
4958	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4959	fi
4960
4961	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4962	echo "if [[ \$? = 1 ]]" >> $jobfile
4963	echo "then" >> $jobfile
4964	echo " echo \" \" " >> $jobfile
4965	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4966	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4967	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4968	echo " execute_mrun=false" >> $jobfile
4969	echo "fi" >> $jobfile
4970	done
4971	fi
4972
4973	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4974	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4975	echo "LOCAL_PWD=$working_directory" >> $jobfile
4976	echo "export LOCAL_PWD" >> $jobfile
4977
4978	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4979	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4980	echo "export LOCAL_MRUN_PATH" >> $jobfile
4981
4982	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4983	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4984	then
4985	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4986	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
4987	then
4988	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
4989	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
4990	fi
4991
4992	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4993	echo "set -x" >> $jobfile
4994	echo "queue=$queue" >> $jobfile
4995	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4996	echo 'ls -al; echo `pwd`' >> $jobfile
4997	echo "cd \$HOME" >> $jobfile
4998	echo "rm -rf $TEMPDIR" >> $jobfile
4999
5000
5001
5002
5003	# JOB PER SUBJOB STARTEN
5004	if [[ $silent = false ]]
5005	then
5006	printf "\n "
5007	else
5008	printf "\n\n"
5009	fi
5010
5011	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
5012	rm -rf $jobfile
5013
5014
5015	fi # ENDE REMOTE-TEIL
5016
5017
5018
5019	# ENDE DER PROZEDUR

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