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source: palm/trunk/SCRIPTS/mrun @ 1126

Last change on this file since 1126 was 1125, checked in by raasch, 12 years ago
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Rev	Line
[1103]	1	#!/bin/ksh
[1046]	2
[1059]	3	# mrun - script for running PALM jobs
	4
[1046]	5	#--------------------------------------------------------------------------------#
	6	# This file is part of PALM.
	7	#
	8	# PALM is free software: you can redistribute it and/or modify it under the terms
	9	# of the GNU General Public License as published by the Free Software Foundation,
	10	# either version 3 of the License, or (at your option) any later version.
	11	#
	12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	15	#
	16	# You should have received a copy of the GNU General Public License along with
	17	# PALM. If not, see <http://www.gnu.org/licenses/>.
	18	#
	19	# Copyright 1997-2012 Leibniz University Hannover
	20	#--------------------------------------------------------------------------------#
	21	#
	22	# Current revisions:
[1090]	23	# ------------------
[1125]	24	#
[1104]	25	#
	26	# Former revisions:
	27	# -----------------
	28	# $Id: mrun 1125 2013-04-09 15:51:37Z hoffmann $
	29	#
[1125]	30	# 1124 2013-04-09 15:46:52Z raasch
	31	# variable "memory" is exported via typeset option -x, because otherwise an unknown
	32	# side effect may lead to data loss while getopts is reading the script-option arguments
	33	#
[1123]	34	# 1122 2013-04-09 08:37:16Z heinze
	35	# Bugfix: change type of variable last_char
	36	#
[1121]	37	# 1119 2013-04-05 15:11:19Z raasch
	38	# Bugfix for setting -T option for subjob
	39	#
[1109]	40	# 1108 2013-03-05 07:03:32Z raasch
	41	# bugfix for coupled runs on lckyut/lckyuh
	42	#
[1107]	43	# 1106 2013-03-04 05:31:38Z raasch
	44	# --stdin argument for mpiexec on lckyuh
	45	# -y and -Y settings output to header
	46	#
[1104]	47	# 1103 2013-02-20 02:15:53Z raasch
[1103]	48	# default script runs again under ksh, because of unsolved problems with read
	49	# from stdin: when bash script is called from a ksh, message "read error: 0:
	50	# Resource temporarily unavailable" appears and script does not stop,
	51	# further bash compatibility adjustments,
	52	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
	53	# on lckyuh, but mrun does not terminate and issues a warning instead
[1046]	54	#
[1102]	55	# 1101 2013-02-17 10:20:21Z raasch
	56	# script now running under bash instead of ksh, which required small adjustments
	57	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
	58	# read from stdin),
	59	# cross compilername on lckyuh compute nodes replaced by real compiler name
	60	#
[1100]	61	# 1099 2013-02-10 01:47:43Z raasch
	62	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
	63	# and for Forwind cluster (lcflow)
	64	# small further adjustments for lckyut
	65	#
[1096]	66	# 1094 2013-02-03 01:52:12Z raasch
	67	# explicit ssh/scp port can be set in config file with environment variable
	68	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
	69	# decalpha parts (yonsei) removed
	70	#
[1091]	71	# 2013-02-02 07:06:13Z raasch
[1099]	72	# adjustments for Kyushu-University computing center (lckyut - tatara)
[1091]	73	#
[1084]	74	# 1083 2013-01-04 10:22:09Z maronga
	75	# bugfix in parameter file check (read %cpp_options was missing)
	76	#
[1070]	77	# 1069 2012-11-28 16:18:43Z maronga
	78	# bugfix: coupling mode was always set to mpi2, typos removed
	79	#
[1059]	80	# 1058 2012-11-21 07:00:35Z raasch
	81	# Intel inspector (inspxe) is given the number of PEs instead of the number of
	82	# nodes
	83	#
[1047]	84	# 1046 2012-11-09 14:38:45Z maronga
	85	# code put under GPL (PALM 3.9)
	86	#
[1090]	87	# 21/03/94 - Siggi - first version finished
	88	# 03/03/94 - Siggi - script development started
	89	#
[1059]	90	#--------------------------------------------------------------------------------#
[1090]	91	# mrun - script for running PALM jobs
	92	#--------------------------------------------------------------------------------#
[1]	93
[1047]	94
[1]	95
	96	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	97
	98	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	99	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	100	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	101
	102	AddFilenames=""
	103	additional_conditions=""
	104	add_source_path=""
	105	afname=""
	106	archive_save=true
	107	archive_system=none
[807]	108	check_namelist_files=true
[920]	109	combine_plot_fields=true
[1]	110	compiler_name=""
	111	cond1=""
	112	cond2=""
	113	config_file=.mrun.config
[206]	114	coupled_dist=""
	115	coupled_mode="mpi1"
[1]	116	cpp_opts=""
[82]	117	cpp_options=""
[1]	118	cpumax=0
	119	cpurest=0
	120	delete_temporary_catalog=true
	121	do_batch=false
	122	do_compile=true
	123	do_remote=false
	124	do_stagein=true
	125	do_stageout=true
	126	do_trace=false
[352]	127	email_notification="none"
[1]	128	exclude=""
	129	executable=""
	130	execution_error=false
[67]	131	fimm=false
[1]	132	fname=test
	133	fromhost=""
[78]	134	global_revision=""
[122]	135	group_number=none
[1]	136	host=""
	137	host_file=""
	138	hp=""
	139	ignore_archive_error=false
	140	input_list=""
	141	interpreted_config_file=""
[164]	142	job_catalog="~/job_queue"
[1]	143	job_on_file=""
	144	keep_data_from_previous_run=false
[183]	145	link_local_input=false
[149]	146	link_local_output=false
[1]	147	localhost_realname=$(hostname)
	148	local_compile=false
[260]	149	local_dvrserver_running=.FALSE.
[1]	150	locat=normal
	151	mainprog=""
	152	makefile=""
[759]	153	max_par_io_str=""
[1]	154	mc=$0
	155	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	156	do
	157	mc=`echo $mc \| cut -f2- -d"/"`
	158	done
[493]	159	module_calls=""
[1]	160	mrun_script_name=$mc
[82]	161	netcdf_inc=""
	162	netcdf_lib=""
[1]	163	netcdf_support=false
	164	node_usage=default
	165	numprocs=""
[206]	166	numprocs_atmos=0
	167	numprocs_ocean=0
[1]	168	OOPT=""
	169	openmp=false
	170	output_list=""
	171	package_list=""
	172	punkte="..........................................................."
	173	queue=none
	174	read_from_config=""
[5]	175	restart_run=false
[622]	176	if [[ `hostname` = rte10 ]]
[1]	177	then
[1103]	178	return_addres=133.5.185.60
	179	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
[693]	180	elif [[ `hostname` = climate0 ]]
	181	then
[1103]	182	return_addres=165.132.26.68
	183	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
[1021]	184	elif [[ `hostname` = urban00 ]]
	185	then
[1103]	186	return_addres=147.46.30.151
	187	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
[622]	188	else
	189	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	190	fi
	191	return_password=""
	192	return_username=$LOGNAME
	193	remotecall=false
	194	remote_username=""
[102]	195	run_coupled_model=false
[1]	196	run_mode=""
	197	scirocco=false
[397]	198	store_on_archive_system=false
[1]	199	striche=" ----------------------------------------------------------------------------"
	200	silent=false
	201	source_list=""
	202	source_path=SOURCE
	203	tasks_per_node=""
	204	threads_per_task=1
	205	tmpcreate=false
	206	tmp_data_catalog=""
	207	transfer_problems=false
	208	usern=$LOGNAME
[377]	209	use_openmp=false
[1101]	210	version="MRUN 2.0 Rev$Rev: 1125 $"
[1]	211	working_directory=`pwd`
	212	TOPT=""
	213	XOPT=""
	214	zeit=$( date \| cut -c 12-19 )
	215
[1124]	216	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
	217	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
	218	# effect may cause data loss when getopts is reading the
	219	# script-option arguments
[1122]	220	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes sekunden tp1
[1]	221
	222
	223
	224
	225	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	226	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	227
	228	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	229	# EXPORTIERT WERDEN
	230	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[1124]	231	export group_number input_list numprocs output_list queue run_mode
[1]	232
	233
	234
	235	# FEHLERBEHANDLUNG
	236	# BEI EXIT:
[83]	237	trap 'rm -rf $working_directory/tmp_mrun
[69]	238	if [[ $locat != localhost ]]
[1]	239	then
[22]	240	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	241	# then
	242	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	243	#MRUN-calls on $localhost
	244	#
	245	#date and time user localhost remotehost termination mrun-command
	246	#--------------------------------------------------------------------------------------------------------------------
	247	#%STATEND%
	248	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	249	# fi
	250	#
	251	# # EINTRAG IN DIE STATISTIK-DATEI
[1101]	252	# string1=`date` #-L35
	253	# string2=$usern #-L12
	254	# string3=$localhost_realname #-L12
	255	# string4=$host #-L12
	256	# string5=$locat #-L12
[22]	257	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	258	# then
	259	# if [[ $do_batch = true ]]
	260	# then
	261	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	262	# else
	263	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	264	# fi
	265	# fi
[69]	266	echo " " > /dev/null
[1]	267	fi
	268
	269	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	270	then
	271
	272	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	273	(( i = 0 ))
	274	while (( i < iec ))
	275	do
	276	(( i = i + 1 ))
	277	printf "\n *** Execution of ERROR-command:\n"
	278	printf " >>> ${err_command[$i]}\n"
	279	eval ${err_command[$i]}
	280	done
[1101]	281	if [[ -n $interpreted_config_file ]]
	282	then
[1]	283	rm -rf $interpreted_config_file
	284	fi
[1101]	285	if [[ -n .mrun_environment ]]
	286	then
[71]	287	rm -rf .mrun_environment
	288	fi
[1]	289	if [[ $tmpcreate = true ]]
	290	then
	291	printf "\n *** Contents of \"$TEMPDIR\":\n"
	292	ls -al; cd
	293	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	294	fi
[260]	295	if [[ "$dvrserver_id" != "" ]]
	296	then
	297	echo "+++ killing dvrserver_id=$dvrserver_id"
	298	kill $dvrserver_id
	299	fi
[1]	300	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	301	then
	302	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	303	fi
	304	printf "\n\n+++ MRUN killed \n\n"
	305	elif [[ $locat != control_c ]]
	306	then
	307	printf "\n\n --> all actions finished\n\n"
	308	printf " Bye, bye $usern !!\n\n"
	309	fi' exit
	310
	311
	312	# BEI TERMINAL-BREAK:
[83]	313	trap 'rm -rf $working_directory/tmp_mrun
[807]	314	rm -rf $working_directory/tmp_check_namelist_files
[69]	315	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	316	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	317	then
	318	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	319	fi
[260]	320	if [[ "$dvrserver_id" != "" ]]
	321	then
	322	echo "+++ killing dvrserver_id=$dvrserver_id"
	323	kill $dvrserver_id
	324	fi
[1]	325	printf "\n+++ MRUN killed by \"^C\" \n\n"
	326	locat=control_c
	327	exit
	328	' 2
	329
	330
[22]	331	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	332	# BEEN SET
	333	if [[ "$PALM_BIN" = "" ]]
	334	then
	335	printf "\n +++ environment variable PALM_BIN has not been set"
	336	printf "\n please set it to the directory where the PALM scripts are located"
	337	locat=palm_bin; exit
	338	fi
[180]	339	export PATH=$PALM_BIN:$PATH
[22]	340
	341
[1]	342
	343	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	344	# FUER FOLGEJOBS BENOETIGT WIRD
[920]	345	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
[1]	346	do
	347	case $option in
	348	(a) afname=$OPTARG;;
[397]	349	(A) store_on_archive_system=true; mc="$mc -A";;
[1]	350	(b) do_batch=true; mc="$mc -b";;
	351	(B) delete_temporary_catalog=false; mc="$mc -B";;
	352	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	353	(C) restart_run=true; mc="$mc -C";;
[1]	354	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	355	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	356	(F) job_on_file="-D"; mc="$mc -F";;
[122]	357	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	358	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	359	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	360	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	361	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	362	(I) ignore_archive_error=true; mc="$mc -I";;
	363	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	364	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	365	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	366	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	367	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	368	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
[622]	369	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
[1]	370	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	371	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	372	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	373	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	374	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	375	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	376	(S) read_from_config=false; mc="$mc -S";;
	377	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
[759]	378	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
[1]	379	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	380	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	381	(v) silent=true; mc="$mc -v";;
[759]	382	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
[1]	383	(x) do_trace=true;set -x; mc="$mc -x";;
	384	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	385	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	386	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[807]	387	(z) check_namelist_files=false; mc="$mc -z";;
[920]	388	(Z) combine_plot_fields=false; mc="$mc -Z";;
[1]	389	(\?) printf "\n +++ unknown option $OPTARG \n"
	390	printf "\n --> type \"$0 ?\" for available options \n"
	391	locat=parameter;exit;;
	392	esac
	393	done
	394
	395
	396	# EVTL. POSITIONSPARAMETER EINLESEN
	397	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
[1101]	398	(( to_shift = $OPTIND - 1 ))
	399	shift $to_shift
[1]	400
	401	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	402	if [[ "$1" = "?" ]]
	403	then
	404	(printf "\n *** mrun can be called as follows:\n"
[920]	405	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
[1]	406	printf "\n Description of available options:\n"
	407	printf "\n Option Description Default-Value"
	408	printf "\n -a base name of input files equiv. -d"
[400]	409	printf "\n -A archiving when using file-attribute fl"
[1]	410	printf "\n -b batch-job on local machine ---"
	411	printf "\n -B do not delete temporary directory at end ---"
	412	printf "\n -c configuration file .mrun.config"
	413	printf "\n -d base name of files attached to program test"
	414	printf "\n -D preprocessor(cpp)-directives \"\" "
	415	printf "\n -F create remote job file only ---"
	416	printf "\n -h execution host $localhost_realname"
	417	printf "\n -i INPUT control list \"\" "
	418	printf "\n -I archiving errors of previous batch-jobs"
	419	printf "\n will be ignored"
	420	printf "\n -k keep data from previous run"
	421	printf "\n -K additional conditions for controling"
	422	printf "\n usage of conditional code and"
	423	printf "\n env-variables in configuration file \"\" "
	424	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	425	printf "\n -M Makefile name Makefile"
	426	printf "\n -n node usage (shared/not_shared) depending on -h"
	427	printf "\n -o OUTPUT control list \"\" "
	428	printf "\n -O use OpenMP ---"
	429	printf "\n -p software package list \"\" "
	430	printf "\n -q queue \"$queue\" "
	431	printf "\n -r run control list (combines -i -o) \"\" "
	432	printf "\n -s filenames of routines to be compiled \"\" "
	433	printf "\n must end with .f, .f90, .F, or .c !"
	434	printf "\n use \"..\" for more than one file and wildcards"
[837]	435	printf "\n -s LM compiles all locally modified files"
[1]	436	printf "\n -S config file interpreted by shellscript ---"
	437	printf "\n -t allowed cpu-time in seconds (batch) 0"
	438	printf "\n -T tasks per node depending on -h"
	439	printf "\n -u username on remote machine \"\" "
	440	printf "\n -v no prompt for confirmation ---"
[759]	441	printf "\n -w maximum parallel io streams as given by -X"
[1]	442	printf "\n -x tracing of mrun for debug purposes ---"
	443	printf "\n -X # of processors (on parallel machines) 1"
[291]	444	printf "\n -y add appendix \"_O\" to all local output"
	445	printf "\n files (ocean precursor runs followed by"
	446	printf "\n coupled atmosphere-ocean runs) ---"
[206]	447	printf "\n -Y run coupled model, \"#1 #2\" with"
	448	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[920]	449	printf "\n -z disable a priori parameter file check ---"
	450	printf "\n -Z skip combine_plot_fields at the end of "
	451	printf "\n the simulation ---"
[1]	452	printf "\n "
	453	printf "\n Possible values of positional parameter <modus>:"
	454	printf "\n \"?\" - this outline \n\n") \| more
	455	exit
	456	elif [[ "$1" != "" ]]
	457	then
	458	printf "\n +++ positional parameter $1 unknown \n"
	459	locat=parameter; exit
	460	fi
	461
	462
	463
	464	# KURZE STARTMELDUNG
	465	printf "\n*** $version "
	466	printf "\n will be executed. Please wait ..."
	467
	468
[82]	469
	470	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	471	if [[ ! -f $config_file ]]
	472	then
	473	printf "\n\n +++ configuration file: "
	474	printf "\n $config_file"
	475	printf "\n does not exist"
	476	locat=connect; exit
	477	fi
	478
	479
	480	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	481	line=""
	482	grep "%host_identifier" $config_file > tmp_mrun
	483	while read line
	484	do
[206]	485	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	486	then
	487	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	488	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	489	if [[ $localhost_realname = $HOSTNAME ]]
[82]	490	then
	491	localhost=$host_identifier
	492	break
	493	fi
	494	fi
	495	done < tmp_mrun
	496
	497	if [[ "$localhost" = "" ]]
	498	then
	499	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	500	printf "\n for local host \"$localhost_realname\"."
	501	printf "\n Please add line"
	502	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	503	printf "\n to the configuration file."
	504	locat=localhost; exit
	505	fi
	506
	507
	508	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	509	case $localhost_realname in
[397]	510	(r1\|r2\|h01\|b01) archive_system=tivoli;;
[82]	511	(cs*) archive_system=ut;;
	512	(fimm.bccs.uib.no) fimm=true;;
	513	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	514	(scirocco) scirocco=true;;
	515	esac
	516
	517
	518
[1]	519	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	520	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	521	[[ "$afname" = "" ]] && afname=$fname
	522
	523
	524	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	525	if [[ "$run_mode" != "" ]]
	526	then
	527	input_list="$input_list $run_mode"
	528	output_list="$output_list $run_mode"
	529	fi
	530
	531
	532	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	533	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	534	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	535	# STARTET)
	536	if [[ "$fromhost" = "" ]]
	537	then
	538	fromhost=$localhost
	539	fi
	540
	541
	542	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	543	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	544	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	545	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	546	if [[ -n $host && "$host" != $localhost ]]
	547	then
	548	do_batch=true
	549	do_remote=true
	550	case $host in
[1099]	551	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
[1]	552	(*) printf "\n"
[83]	553	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	554	printf "\n is not available"
[1]	555	locat=nqs; (( iec = 0 )); exit;;
	556	esac
	557	else
	558	host=$localhost
	559	fi
	560
	561
	562	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	563	if [[ -n $additional_conditions ]]
	564	then
[69]	565	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	566	cond1=`echo $additional_conditions \| cut -d" " -f1`
	567	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	568	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	569	if [[ -n $dummy ]]
	570	then
	571	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	572	locat=options; exit
	573	fi
[503]	574	block=_$cond1
	575	[[ -n $cond2 ]] && block=${block}_$cond2
[1]	576	fi
	577
	578
[206]	579	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	580	if [[ $run_coupled_model = true ]]
	581	then
	582
	583	if [[ -n $coupled_dist ]]
	584	then
	585
	586	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	587	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	588
	589	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	590	then
	591
	592	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	593	printf "\n PEs (total) : $numprocs"
	594	printf "\n PEs (atmosphere): $numprocs_atmos"
	595	printf "\n PEs (ocean) : $numprocs_ocean"
	596	locat=coupling; exit
	597
	598	fi
	599
	600	else
	601
	602	(( numprocs_ocean = $numprocs / 2 ))
	603	(( numprocs_atmos = $numprocs / 2 ))
	604
	605	fi
	606	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	607
	608	# GET coupled_mode FROM THE CONFIG FILE
	609	line=""
	610	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	611	while read line
	612	do
[1069]	613	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
[206]	614	then
	615	coupled_mode="mpi2"
	616	fi
	617	done < tmp_mrun
	618
	619	fi
	620
	621
[1]	622	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	623	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	624	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	625	then
	626	if [[ $ignore_archive_error = false ]]
	627	then
	628	printf "\n +++ data archiving of previous run failed"
	629	printf "\n see directory \~/job_queue on remote machine"
	630	locat=archive; exit
	631	else
	632	printf "\n +++ warning: data archiving in a previous run failed"
	633	printf "\n MRUN continues, trying to get backup copy"
	634	fi
	635	fi
	636
	637
[1099]	638	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	639	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	640	mrun_memory=$memory
	641	mrun_group_number=$group_number
	642	mrun_cpumax=$cpumax
	643	mrun_numprocs=$numprocs
[1]	644
[1099]	645
[1]	646	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	647	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	648	if [[ "$read_from_config" = false ]]
	649	then
	650
	651	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	652	while read zeile
	653	do
	654	[[ $silent = false ]] && printf "."
	655
	656
	657	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	658	# ERSETZEN
	659	eval zeile=\"$zeile\"
	660
	661
	662	# INTERPRETATION DER ZEILE
[21]	663	if [[ "$(echo $zeile)" = "" ]]
[1]	664	then
[21]	665	# LEERZEILE, KEINE AKTION
	666	continue
[1]	667
[21]	668	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	669	then
	670
[1]	671	# ZEILE IST KOMMENTARZEILE
	672	true
	673
	674	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	675	then
	676
	677	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	678	zeile=$(echo $zeile \| cut -c2-)
[69]	679	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	680	var=`echo $zeile \| cut -d" " -f1`
	681	value=`echo $zeile \| cut -d" " -s -f2`
	682	for_host=`echo $zeile \| cut -d" " -s -f3`
	683	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	684	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	685
	686	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	687	then
	688
	689	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	690	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	691	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	692
	693
	694	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	695	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	696	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	697	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	698	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	699	# KONFIGURATIONSDATEI
	700	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	701	then
	702	eval $var=\$value
	703
	704	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	705	if [[ $do_trace = true ]]
	706	then
	707	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	708	fi
	709	fi
	710
	711	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	712	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	713	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	714	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	715	if [[ $var = host ]]
	716	then
	717	if [[ -n $host && "$host" != $localhost ]]
	718	then
	719	do_batch=true
	720	do_remote=true
	721	case $host in
[1099]	722	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
[83]	723	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	724	printf "\n is not available"
[1]	725	locat=nqs; exit;;
	726	esac
	727	else
	728	host=$localhost
	729	fi
	730	fi
	731
	732	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	733	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	734	# DEN PROGRAMMEN BENOETIGT WERDEN
	735	export $var
	736	fi
	737
	738
	739
	740
	741	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	742	then
	743
	744	# ZEILE DEFINIERT ERROR-KOMMANDO
	745	(( iec = iec + 1 ))
	746	zeile=$(echo $zeile \| cut -c4-)
	747	err_command[$iec]="$zeile"
	748
	749	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	750	then
	751
	752	# ZEILE DEFINIERT INPUT-KOMMANDO
	753	(( iic = iic + 1 ))
	754	zeile=$(echo $zeile \| cut -c4-)
	755	in_command[$iic]="$zeile"
	756
	757	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	758	then
	759
	760	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	761	(( ioc = ioc + 1 ))
	762	zeile=$(echo $zeile \| cut -c4-)
	763	out_command[$ioc]="$zeile"
	764
	765	else
	766
	767	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	768	# s2a: in/out - Feld
	769	# s2b: loc - Feld (optional)
	770	# s2c: tr/ar - Feld (optional)
[69]	771	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	772	s1=`echo $zeile \| cut -d" " -f1`
	773	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	774	s2a=$(echo $s2 \| cut -d":" -f1)
	775	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	776	then
	777	s2b=""
	778	s2c=""
	779	else
[69]	780	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	781	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	782	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	783	fi
[69]	784	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	785	s3=`echo $zeile \| cut -d" " -f3`
	786	s4=`echo $zeile \| cut -d" " -s -f4`
	787	s5=`echo $zeile \| cut -d" " -s -f5`
	788	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	789
	790
	791	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	792	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	793	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	794	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	795	# HANDEN SEIN MUSS (D.H. s2b = loc)
	796	IFSALT="$IFS"; IFS="$IFS:"
	797	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	798	then
	799	found=false
	800	for actual in $input_list
	801	do
	802	for formal in $s3
	803	do
	804	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	805	done
	806	done
	807	if [[ $found = true ]]
	808	then
	809	(( iin = iin + 1 ))
	810	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	811	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	812	extin[$iin]=$s6
	813	fi
	814	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	815	then
	816	found=false
	817	for actual in $output_list
	818	do
	819	for formal in $s3
	820	do
	821	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	822	done
	823	done
	824	if [[ $found = true ]]
	825	then
	826	(( iout = iout + 1 ))
	827	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	828	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	829	fi
	830	elif [[ "$s2a" != in && "$s2a" != out ]]
	831	then
	832	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	833	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	834	locat=connect; exit
	835	fi
	836	IFS="$IFSALT"
	837	fi
	838	done < $config_file
	839
	840	else
	841
	842
	843	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	844	[[ $silent = false ]] && printf "..."
	845	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	846	export interpreted_config_file=.icf.$RANDOM
	847
	848
[69]	849
	850	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	851	# VERFUEGUNG STELLEN
	852	cat > .mrun_environment << %%END%%
	853	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	854	config_file = '$config_file', do_remote = '$do_remote',
	855	do_trace = '$do_trace', host = '$host',
	856	input_list = '$input_list', icf = '$interpreted_config_file',
	857	localhost = '$localhost', output_list = '$output_list' /
	858
	859	%%END%%
	860
[251]	861	if [[ $localhost_realname = "sx-fep" ]]
[66]	862	then
[251]	863	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	864	else
[503]	865
	866	if [[ "$host" != $localhost ]]
	867	then
	868
	869	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
	870	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
	871	if [[ $? != 0 ]]
	872	then
	873	printf "\n\n +++ no interpret_config found"
	874	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
	875	locat=interpret_config; exit
	876	fi
	877	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
	878	$interpret_config_executable
	879
	880	else
	881
	882	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
	883	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
	884	then
	885	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
	886	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
	887	locat=interpret_config; exit
	888	else
	889	interpret_config${block}.x
	890	fi
	891
	892	fi
[66]	893	fi
[71]	894	rm .mrun_environment
[1]	895
[71]	896
[1]	897	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	898	chmod u+x $interpreted_config_file
	899	export PATH=$PATH:.
	900	. $interpreted_config_file
[71]	901	rm $interpreted_config_file
[1]	902
[1099]	903	fi
[71]	904
[69]	905
[1099]	906	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
	907	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
	908	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
	909	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	910	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
	911	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
	912	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
[1]	913
	914
	915	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	916	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	917	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	918	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	919	if [[ "$SOURCES_COMPLETE" = "" ]]
	920	then
	921
	922	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	923	# VEREINBART WURDE
	924	source_path=""
	925	line=""
	926	grep "%source_path" $config_file > tmp_mrun
	927	while read line
	928	do
	929	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	930	then
	931	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	932	then
	933	global_source_path=`echo $line \| cut -d" " -f2`
	934	fi
	935	fi
	936	done < tmp_mrun
	937
	938	line=""
	939	found=false
	940	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	941	while read line
	942	do
	943	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	944	then
	945	if [[ $found = true ]]
	946	then
	947	printf "\n\n +++ more than one source path found in configuration file"
	948	printf "\n for local host \"$localhost\" "
	949	locat=source_path; exit
	950	fi
	951	source_path=`echo $line \| cut -d" " -f2`
	952	found=true
	953	fi
	954	done < tmp_mrun
	955	rm tmp_mrun
	956
	957	if [[ "$source_path" = "" ]]
	958	then
	959	if [[ "$global_source_path" != "" ]]
	960	then
	961	source_path=$global_source_path
	962	else
	963	printf "\n\n +++ no source path found in configuration file"
	964	printf "\n for local host \"$localhost\" "
	965	locat=source_path; exit
	966	fi
	967	fi
	968	eval source_path=$source_path
	969
	970	if [[ ! -d $source_path ]]
	971	then
	972	printf "\n\n +++ source path \"$source_path\" on local host"
	973	printf "\n \"$localhost\" does not exist"
	974	locat=source_path; exit
	975	fi
	976
	977	fi
	978
	979
[78]	980	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	981	# DURCH OPTION -G MITGETEILT)
[693]	982	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
[78]	983	then
	984	global_revision=`svnversion $source_path 2>/dev/null`
	985	global_revision="Rev: $global_revision"
	986	fi
[1]	987
[78]	988
[1]	989	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	990	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	991	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	992	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	993	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	994	if [[ -n $host && "$host" != $localhost ]]
	995	then
	996	do_batch=true
	997	do_remote=true
	998	case $host in
[1099]	999	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
[1]	1000	(*) printf "\n"
[83]	1001	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1002	printf "\n is not available"
[1]	1003	locat=nqs; (( iec = 0 )); exit;;
	1004	esac
	1005	else
	1006	host=$localhost
	1007	fi
	1008
	1009
	1010	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1011	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1012	then
	1013
	1014	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1015	if [[ ! -n $numprocs ]]
	1016	then
	1017	printf "\n"
	1018	printf "\n +++ option \"-K parallel\" requires additional specification"
	1019	printf "\n of the number of processors to be used by"
	1020	printf "\n mrun-option \"-X\" or by environment-variable"
	1021	printf "\n \"numprocs\" in the configuration file"
	1022	locat=numprocs; (( iec = 0 )); exit
	1023	fi
	1024
	1025	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1026	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1027	# GESAMTPROZESSORANZAHL IST
[1039]	1028	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
[1]	1029	then
[759]	1030	printf "\n"
	1031	printf "\n +++ option \"-T\" (tasks per node) is missing"
	1032	printf "\n set -T option or define tasks_per_node in the config file"
	1033	locat=tasks_per_node; (( iec = 0 )); exit
	1034	fi
[1039]	1035	if [[ $host != lcflow && $host != lcxt5m ]]
[759]	1036	then
[848]	1037	(( ival = $tasks_per_node ))
	1038	(( pes = numprocs ))
	1039	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1040	# then
	1041	# (( pes = pes - 1 ))
	1042	# fi
	1043	(( ii = pes / ival ))
	1044	if (( pes - ii * ival > 0 ))
	1045	then
	1046	printf "\n"
	1047	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1048	printf "\n divisor of the total number of processors (option \"-X\")"
	1049	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1050	locat=tasks_per_node; (( iec = 0 )); exit
	1051	fi
[1]	1052	fi
	1053
[759]	1054
[1]	1055	# IBMY HAT NUR EINEN KNOTEN
	1056	if [[ $host = ibmy ]]
	1057	then
	1058	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1059	then
	1060	printf "\n"
	1061	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1062	printf "\n total number of processors (option \"-X\")"
	1063	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1064	locat=tasks_per_node; (( iec = 0 )); exit
	1065	fi
	1066	fi
	1067
[377]	1068
	1069	# SETTINGS FOR SUBJOB-COMMAND
[1]	1070	OOPT="-O $threads_per_task"
	1071
	1072	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1073	if [[ "$tasks_per_node" != "" ]]
	1074	then
[1119]	1075	TOPT="-T $tasks_per_node"
[1]	1076	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1077	fi
	1078
	1079	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1080	# SETZEN
	1081	if [[ $node_usage = default ]]
	1082	then
	1083	if [[ $host = ibms ]]
	1084	then
	1085	node_usage=shared
[181]	1086	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1087	then
	1088	node_usage=singlejob
[1]	1089	else
	1090	node_usage=not_shared
	1091	fi
	1092	fi
[181]	1093
[635]	1094	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
[1]	1095	then
	1096	printf "\n"
	1097	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1098	printf "\n \"shared\" or \"not_shared\""
	1099	locat=tasks_per_node; (( iec = 0 )); exit
	1100	fi
	1101
	1102	fi
	1103
	1104	# PRUEFEN, OB HOSTFILE EXISTIERT
	1105	if [[ -n $hostfile ]]
	1106	then
	1107	if [[ ! -f $hostfile ]]
	1108	then
	1109	printf "\n"
	1110	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1111	locat=hostfile; exit
	1112	fi
	1113	fi
	1114
	1115	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1116	if [[ $host = ibmy && $do_remote = false ]]
	1117	then
	1118	if [[ ! -f $HOME/.rhosts ]]
	1119	then
	1120	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1121	printf "\n\n *** file:"
	1122	printf "\n $HOME/.rhosts"
	1123	printf "\n was created\n"
	1124	fi
	1125	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1126	then
	1127	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1128	printf "\n\n *** file:"
	1129	printf "\n $HOME/.rhosts"
	1130	printf "\n was extended by the name of the current host\n"
	1131	fi
	1132	fi
	1133
	1134
[759]	1135	# Set default value for the maximum number of parallel io streams
	1136	if [[ "$maximum_parallel_io_streams" = "" ]]
	1137	then
	1138	maximum_parallel_io_streams=$numprocs
	1139	fi
[1]	1140
[759]	1141
[1094]	1142	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
	1143	if [[ "$scp_port" != "" ]]
	1144	then
	1145	PORTOPT="-P $scp_port"
	1146	SSH_PORTOPT="-p $scp_port"
	1147	fi
	1148
	1149
[1]	1150	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1151	if [[ $queue = none ]]
	1152	then
	1153	case $host in
[312]	1154	(ibmh) queue=no_class;;
[693]	1155	(ibmkisti) queue=class.32plus;;
[1]	1156	(ibmy) queue=parallel;;
[1040]	1157	(lckiaps) queue=normal;;
[440]	1158	(lckyoto) queue=ph;;
[1099]	1159	(lckyuh) queue=fx-single;;
	1160	(lckyut) queue=cx-single;;
[821]	1161	(lcsgib) queue=testq;;
	1162	(lcsgih) queue=testq;;
[635]	1163	(lctit) queue=S;;
[1]	1164	(nech) queue=none;;
[253]	1165	(necriam) queue=SP;;
[1]	1166	(unics) queue=unics;;
	1167	esac
	1168	fi
	1169
	1170
	1171	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1172	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1173	# ERMITTELN
	1174	(( i = 0 ))
	1175	while (( i < iin ))
	1176	do
	1177	(( i = i + 1 ))
	1178	(( maxcycle = 0 ))
	1179
	1180	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1181	if [[ "${actionin[$i]}" = di ]]
	1182	then
	1183	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1184	# REM-MASCHINE AUSWERTEN
	1185	eval filename=${pathin[$i]}/${endin[$i]}
	1186	else
	1187	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1188	# REM-MASCHINE AUSWERTEN
	1189	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1190	fi
[892]	1191	eval pathname=${pathin[$i]}
[1]	1192
[920]	1193	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
	1194	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
	1195	then
	1196	filename_input=$filename
	1197	fi
[892]	1198
[1]	1199	# PRUEFEN AUF VORHANDENSEIN
	1200	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
[746]	1201	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
[1]	1202	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1203	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1204	then
	1205	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1206	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1207	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1208	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1209	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1210	if [[ "${transin[$i]}" != "locopt" ]]
	1211	then
	1212	printf "\n\n +++ INPUT-file: "
	1213	if [[ "${extin[$i]}" = "" ]]
	1214	then
	1215	printf "\n $filename"
	1216	else
	1217	printf "\n $filename.${extin[$i]}"
	1218	fi
	1219	printf "\n does not exist\n"
	1220	locat=input; exit
	1221	else
	1222	transin[$i]="unavailable"
	1223	fi
	1224	else
	1225
	1226	# ZYKLUSNUMMER FESTSTELLEN
	1227	ls -1 -d $filename > filelist 2>/dev/null
	1228	ls -1 -d $filename.* >> filelist 2>/dev/null
	1229	while read zeile
	1230	do
[1101]	1231	cycle=$(echo $zeile \| cut -f2 -d".")
[1]	1232	if [[ "$cycle" = "$zeile" ]]
	1233	then
	1234	(( icycle = 0 ))
	1235	elif [[ "$cycle" = "${extin[$i]}" ]]
	1236	then
	1237	(( icycle = 0 ))
	1238	else
	1239	(( icycle = $cycle ))
	1240	fi
	1241	if (( icycle > maxcycle ))
	1242	then
	1243	(( maxcycle = icycle ))
	1244	file_to_be_used=$zeile
	1245	fi
	1246	done <filelist
	1247	rm filelist
	1248
	1249	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1250	if (( maxcycle > 0 ))
	1251	then
	1252	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1253	then
	1254	filename=${filename}.$maxcycle.${extin[$i]}
	1255	else
	1256	filename=${filename}.$maxcycle
	1257	fi
	1258	else
	1259	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1260	then
	1261	filename=${filename}.${extin[$i]}
	1262	fi
	1263	fi
	1264
	1265	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1266	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1267	absnamein[$i]=$filename
	1268	if (( maxcycle > 0 ))
	1269	then
	1270	if [[ "${actionin[$i]}" = di ]]
	1271	then
	1272	frelin[$i]=${endin[$i]}.$maxcycle
	1273	else
	1274	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1275	fi
	1276	else
	1277	if [[ "${actionin[$i]}" = di ]]
	1278	then
	1279	frelin[$i]=${endin[$i]}
	1280	else
	1281	frelin[$i]=${afname}${endin[$i]}
	1282	fi
	1283	fi
	1284
	1285	fi
	1286	done
[920]	1287
[1]	1288	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1289	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1290	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1291	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1292	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1293	(( i = 0 ))
	1294	while (( i < iout ))
	1295	do
	1296	(( i = i + 1 ))
	1297	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1298	then
[260]	1299	if [[ "${actionout[$i]}" = tr ]]
[1]	1300	then
	1301	actionout[$i]=""
[260]	1302	elif [[ "${actionout[$i]}" = trpe ]]
	1303	then
	1304	actionout[$i]=pe
[1]	1305	elif [[ "${actionout[$i]}" = tra ]]
	1306	then
	1307	actionout[$i]=a
	1308	fi
	1309	(( maxcycle = 0 ))
	1310	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1311	eval catalogname=${pathout[$i]}
	1312	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
[746]	1313	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
[1]	1314	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1315	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1316	then
	1317
	1318	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1319	if cat /dev/null > $filename
	1320	then
	1321	rm $filename
	1322	else
	1323
	1324	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1325	if [[ ! -d $catalogname ]]
	1326	then
	1327	if mkdir -p $catalogname
	1328	then
	1329	printf "\n\n *** directory:"
	1330	printf "\n $catalogname"
	1331	printf "\n was created\n"
	1332	else
	1333	printf "\n\n +++ OUTPUT-file:"
	1334	printf "\n $filename"
	1335	printf "\n cannot be created, because directory does not exist"
	1336	printf "\n and cannot be created either"
	1337	printf "\n"
	1338	locat=output ; exit
	1339	fi 2>/dev/null
	1340	else
	1341	printf "\n\n +++ OUTPUT-file:"
	1342	printf "\n $filename"
	1343	printf "\n cannot be created, although directory exists"
	1344	printf "\n"
	1345	locat=output ; exit
	1346	fi
	1347	fi 2>/dev/null
	1348	else
	1349
	1350	# ZYKLUSNUMMER FESTSTELLEN
	1351	ls -1 -d $filename > filelist 2>/dev/null
	1352	ls -1 -d $filename.* >> filelist 2>/dev/null
	1353	while read zeile
	1354	do
[1101]	1355	cycle=$(echo $zeile \| cut -f2 -d".")
[1]	1356	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1357	then
	1358	(( icycle = 1 ))
	1359	else
	1360	(( icycle = $cycle + 1 ))
	1361	fi
	1362	if (( icycle > maxcycle ))
	1363	then
	1364	(( maxcycle = icycle ))
	1365	fi
	1366	done <filelist
	1367	rm filelist
	1368	fi
	1369
	1370	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1371	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1372	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1373	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1374	if [[ "${actionout[$i]}" != a ]]
	1375	then
	1376	if (( maxcycle > 0 ))
	1377	then
	1378	filename=${filename}.$maxcycle
	1379	if cat /dev/null > $filename
	1380	then
	1381	rm $filename
	1382	else
	1383	printf "\n +++ OUTPUT-file:"
	1384	printf "\n $filename"
	1385	printf "\n cannot be created"
	1386	locat=output ; exit
	1387	fi
	1388	fi
	1389	else
	1390	(( maxcycle = maxcycle - 1 ))
	1391	if (( maxcycle > 0 ))
	1392	then
	1393	filename=${filename}.$maxcycle
	1394	fi
	1395	fi
	1396
	1397	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1398	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1399	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1400	pathout[$i]=$filename
	1401	if (( maxcycle > 0 ))
	1402	then
	1403	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1404	else
	1405	frelout[$i]=${fname}${endout[$i]}
	1406	fi
	1407
	1408	fi
	1409	done
	1410
	1411
[260]	1412	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1413	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1414	then
[260]	1415	if [[ "$dvr_inc" = "" ]]
[83]	1416	then
[260]	1417	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1418	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1419	locat=dvr; exit
[83]	1420	fi
[260]	1421	if [[ "$dvr_lib" = "" ]]
[83]	1422	then
[260]	1423	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1424	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1425	locat=dvr; exit
[83]	1426	fi
	1427	fi
	1428
	1429
[1]	1430	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1431	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1432	# UEBERSETZT ZU WERDEN)
	1433	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1434	then
	1435	printf "\n +++ neither main program nor executable defined"
	1436	locat=source; exit
	1437	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1438	then
	1439	printf "\n +++ main program as well as executable defined"
	1440	locat=source; exit
	1441	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1442	then
	1443	do_compile=false
	1444	fi
	1445
	1446
[191]	1447	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1448	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1449	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1450	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1451	then
	1452	rm -rf SOURCES_FOR_RUN_$fname
	1453	mkdir SOURCES_FOR_RUN_$fname
	1454	fi
	1455
	1456
[1]	1457	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1458	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1459	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1460	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1461	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1462	then
	1463
[5]	1464	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
[1]	1465
[838]	1466	if [[ "$source_list" = LOCALLY_MODIFIED ]]
[1]	1467	then
	1468
[5]	1469	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1470	source_list=""
	1471	cd $source_path
	1472
	1473
	1474	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1475	if [[ ! -d .svn ]]
	1476	then
	1477	printf "\n\n +++ source directory"
	1478	printf "\n \"$source_path\" "
	1479	printf "\n is not under control of \"subversion\"."
[306]	1480	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1481	fi
	1482
	1483
	1484	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1485	Filenames=""
[69]	1486	svn status > tmp_mrun
	1487	while read line
[5]	1488	do
	1489	firstc=`echo $line \| cut -c1`
	1490	if [[ $firstc = M \|\| $firstc = "?" ]]
	1491	then
	1492	Name=`echo "$line" \| cut -c8-`
	1493	extension=`echo $Name \| cut -d. -f2`
	1494	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1495	then
	1496	Filenames="$Filenames "$Name
	1497	fi
	1498	fi
[69]	1499	done < tmp_mrun
[5]	1500
	1501
	1502	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1503	for dateiname in $Filenames
	1504	do
	1505	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1506	source_list=$source_list"$dateiname "
	1507	done
	1508
	1509	cd - > /dev/null
	1510
	1511
[1]	1512	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1513	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1514	# VORHANDEN
[5]	1515	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1516	then
	1517
	1518	cd $source_path
	1519
	1520	for filename in $source_list
	1521	do
	1522
	1523	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
[1103]	1524	if [[ $(echo $filename \| grep -c "/") != 0 ]]
[1]	1525	then
	1526	printf "\n +++ source code file: $filename"
	1527	printf "\n must not contain (\"/\") "
	1528	locat=source; exit
	1529	fi
	1530
	1531	if [[ ! -f $filename ]]
	1532	then
	1533	printf "\n +++ source code file: $filename"
	1534	printf "\n does not exist"
	1535	locat=source; exit
	1536	else
	1537	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1538	fi
	1539
	1540	done
	1541
	1542	cd - > /dev/null
	1543
	1544	fi
	1545
	1546
	1547	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1548	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1549	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1550	if [[ $restart_run != true ]]
[1]	1551	then
	1552
	1553	if [[ ! -f "$source_path/$mainprog" ]]
	1554	then
	1555	printf "\n\n +++ main program: $mainprog"
	1556	printf "\n does not exist in source directory"
	1557	printf "\n \"$source_path\"\n"
	1558	locat=source; exit
	1559	else
	1560	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1561	then
	1562	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1563	source_list=${mainprog}" $source_list"
	1564	fi
	1565	fi
	1566	fi
	1567
	1568
[211]	1569	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1570	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1571	if [[ "$restart_run" != true ]]
	1572	then
	1573	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1574	if [[ ! -f $makefile ]]
	1575	then
	1576	printf "\n +++ file \"$makefile\" does not exist"
	1577	locat=make; exit
	1578	else
	1579	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1580	fi
	1581	fi
	1582
	1583
[1]	1584	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1585	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1586	then
	1587
	1588	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1589	if [[ ! -d $add_source_path ]]
	1590	then
	1591	printf "\n\n +++ WARNING: additional source code directory"
	1592	printf "\n \"$add_source_path\" "
	1593	printf "\n does not exist or is not a directory."
	1594	printf "\n No source code will be used from this directory!\n"
	1595	add_source_path=""
[931]	1596	if [[ $silent == false ]]
	1597	then
	1598	sleep 3
	1599	fi
[1]	1600	else
	1601
	1602	cd $add_source_path
[211]	1603	found=false
[1]	1604
	1605	Names=$(ls -1 *.f90 2>&1)
	1606	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1607	Names=$(ls -1 *.F90 2>&1)
	1608	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1609	Names=$(ls -1 *.F 2>&1)
	1610	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1611	Names=$(ls -1 *.f 2>&1)
	1612	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1613	Names=$(ls -1 *.c 2>&1)
	1614	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1615
	1616	cd - > /dev/null
	1617	cd SOURCES_FOR_RUN_$fname
	1618
[211]	1619	# COPY MAKEFILE IF EXISTING
	1620	if [[ -f $add_source_path/Makefile ]]
	1621	then
	1622	printf "\n\n *** user Makefile from directory"
	1623	printf "\n \"$add_source_path\" is used \n"
[931]	1624	if [[ $silent == false ]]
	1625	then
	1626	sleep 1
	1627	fi
[211]	1628	cp $add_source_path/Makefile .
	1629	fi
	1630
[1]	1631	for dateiname in $AddFilenames
	1632	do
	1633	if [[ -f $dateiname ]]
	1634	then
	1635	printf "\n +++ source code file \"$dateiname\" found in additional"
	1636	printf "\n source code directory \"$add_source_path\" "
[211]	1637	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1638	printf "\n from directory \"$source_path\"."
[1]	1639	locat=source; exit
	1640	fi
	1641
	1642	cp $add_source_path/$dateiname .
	1643	source_list="$source_list $dateiname"
	1644
[211]	1645	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1646	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1647	then
	1648	printf "\n\n +++ user file \"$dateiname\" "
	1649	printf "\n is not listed in Makefile \n"
	1650	locat=source; exit
	1651	else
	1652
[1]	1653	# Default User-Interface von der Liste entfernen, falls Datei
	1654	# ein User-Interface enthaelt
[211]	1655	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1656	# then
	1657	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1658	# then
	1659	# rm -rf user_interface.f90
	1660	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1661	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1662	# printf "\n since a user-interface is found in file"
	1663	# printf "\n \"$add_source_path/$dateiname\" \n"
	1664	# sleep 3
	1665	# else
	1666	if [[ $found = false ]]
[1]	1667	then
[211]	1668	found=true
	1669	printf "\n\n *** following user file(s) added to the"
	1670	printf " files to be translated:\n "
[1]	1671	fi
[211]	1672	printf "$dateiname "
[931]	1673	if [[ $silent == false ]]
	1674	then
	1675	sleep 0.5
	1676	fi
	1677
[1]	1678	fi
	1679	done
[211]	1680	[[ $found = true ]] && printf "\n"
[1]	1681	cd - > /dev/null
	1682	fi
	1683	fi
	1684
	1685
	1686	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1687	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1688	if [[ $restart_run != true && -n $package_list ]]
[1]	1689	then
	1690
	1691	cd $source_path
	1692
	1693	for package in $package_list
	1694	do
	1695
	1696	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1697
	1698	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1699	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1700	# LIEFERT
	1701	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1702
	1703
	1704	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1705	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1706	for source_list_name in $package_source_list
	1707	do
	1708	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1709	then
	1710
	1711	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1712	ending=`echo $source_list_name \| cut -f2 -d.`
	1713	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1714	then
	1715	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1716	source_list="$source_list $source_list_name"
	1717	fi
	1718	fi
	1719	done
	1720	done
	1721
	1722	cd - > /dev/null
	1723	fi
	1724
	1725
	1726	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1727	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1728	# if [[ "$restart_run" != true ]]
	1729	# then
	1730	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1731	# if [[ ! -f $makefile ]]
	1732	# then
	1733	# printf "\n +++ file \"$makefile\" does not exist"
	1734	# locat=make; exit
	1735	# else
	1736	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1737	# fi
	1738	# fi
[1]	1739
	1740	fi # do_compile=true
	1741
	1742
	1743	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1744	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1745	if [[ $do_compile = true ]]
	1746	then
	1747
	1748	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1749	# ZUSAMMENSETZEN
[83]	1750	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1751	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1752	then
[82]	1753	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1754	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1755	then
[82]	1756	cpp_options="$cpp_options -D__nec"
	1757	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1758	then
	1759	cpp_options="$cpp_options -D__lc"
[1]	1760	else
[82]	1761	cpp_options="$cpp_options -D__$localhost"
[1]	1762	fi
[83]	1763
	1764	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1765	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1766	then
[82]	1767	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1768	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1769	else
[82]	1770	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1771	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1772	fi
[83]	1773
	1774	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1775	if [[ -n $package_list ]]
	1776	then
	1777	for package in $package_list
	1778	do
	1779	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1780	then
	1781	if [[ $package != "dvrp_graphics+1PE" ]]
	1782	then
[82]	1783	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1784	else
[82]	1785	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1786	export use_seperate_pe_for_dvrp_output=true
	1787	fi
	1788	else
	1789	if [[ $package != "dvrp_graphics+1PE" ]]
	1790	then
[82]	1791	cpp_options="$cpp_options -D__$package"
[1]	1792	else
[82]	1793	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1794	export use_seperate_pe_for_dvrp_output=true
	1795	fi
	1796	fi
	1797	done
	1798	fi
[83]	1799
	1800	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1801	if [[ -n $cpp_opts ]]
	1802	then
	1803	for popts in $cpp_opts
	1804	do
[82]	1805	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1806	then
	1807	cpp_options="${cpp_options},-D__$popts=__$popts"
	1808	else
	1809	cpp_options="$cpp_options -D__$popts"
	1810	fi
[1]	1811	done
	1812	fi
	1813
	1814	else
	1815
	1816
	1817	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1818	if [[ $do_remote = false ]]
	1819	then
	1820	if [[ ! -f $executable ]]
	1821	then
	1822	printf "\n +++ executable file: $executable"
	1823	printf "\n does not exist"
	1824	locat=executable; exit
	1825	fi
	1826	fi
	1827	fi
	1828
	1829
	1830	# JOBMODUS FESTSTELLEN
[635]	1831	if [[ "$ENVIRONMENT" = BATCH ]]
[1]	1832	then
	1833	jobmo=BATCH
	1834	else
	1835	jobmo=INTERACTIVE
	1836	fi
	1837
	1838
[635]	1839	# no interactive runs on lctit
	1840	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
	1841	then
	1842	printf "\n +++ no interactive runs allowed on host \"$host\" "
	1843	printf "\n please submit batch job using mrun option \"-b\" \n"
	1844	locat=normal; exit
	1845	fi
	1846
	1847
[1]	1848	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1849	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1850	if [[ "$compiler_name" = "" ]]
	1851	then
[82]	1852
[220]	1853	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1854	locat=compiler_name; exit
	1855
[1]	1856	fi
	1857
	1858
[251]	1859	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	1860	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	1861
	1862
	1863
	1864	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	1865	kennung=$RANDOM
	1866	if [[ "$tmp_user_catalog" = "" ]]
	1867	then
[312]	1868	if [[ $localhost = ibmh ]]
[1]	1869	then
[312]	1870	tmp_user_catalog=$SCRATCH
[1]	1871	elif [[ $localhost = nech ]]
	1872	then
	1873	tmp_user_catalog=$WRKSHR
	1874	else
	1875	tmp_user_catalog=/tmp
	1876	fi
	1877	fi
	1878	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	1879
	1880
	1881	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	1882	# BESTIMMEN
	1883	if [[ "$tmp_data_catalog" = "" ]]
	1884	then
[622]	1885	if [[ $localhost = nech ]]
[1]	1886	then
	1887	tmp_data_catalog=$WRKSHR/mrun_restart_data
	1888	else
	1889	tmp_data_catalog=/tmp/mrun_restart_data
	1890	fi
	1891	fi
	1892
	1893
	1894	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	1895	# ERSETZEN
	1896	if [[ $do_remote = false && $do_compile = true ]]
	1897	then
	1898	eval fopts=\"$fopts\"
	1899	eval lopts=\"$lopts\"
	1900	fi
	1901
	1902
	1903
	1904	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	1905	fopts="$fopts $netcdf_inc $dvr_inc"
	1906	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	1907	ROPTS="$ropts"
[1099]	1908	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
[1090]	1909	# then
[1]	1910	XOPT="-X $numprocs"
[1090]	1911	# fi
[1]	1912
	1913
	1914
	1915	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	1916	# GRAMM BENOETIGT
	1917	done=false
	1918	while [[ $done = false ]]
	1919	do
	1920	cputime=$cpumax
	1921	if (( $cputime == 0 ))
	1922	then
[246]	1923	if [[ $do_batch = true ]]
	1924	then
	1925	printf "\n +++ cpu-time is undefined"
	1926	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	1927	printf "\n >>> "
	1928	read cputime 1>/dev/null 2>&1
	1929	else
	1930	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	1931	fi
[1]	1932	else
	1933	done=true
	1934	fi
	1935	cpumax=$cputime
	1936	done
	1937
	1938	(( minuten = cputime / 60 ))
	1939	(( sekunden = cputime - minuten * 60 ))
	1940
	1941
	1942	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	1943	if [[ $do_batch = true ]]
	1944	then
	1945	done=false
	1946	while [[ $done = false ]]
	1947	do
	1948	if (( memory == 0 ))
	1949	then
	1950	printf "\n +++ memory demand is undefined"
	1951	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	1952	printf "\n >>> "
	1953	read memory 1>/dev/null 2>&1
	1954	else
	1955	done=true
	1956	fi
	1957	done
	1958	fi
	1959
	1960
	1961	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	1962	if [[ $do_remote = true && -z $remote_username ]]
	1963	then
	1964	while [[ -z $remote_username ]]
	1965	do
	1966	printf "\n +++ username on remote host \"$host\" is undefined"
	1967	printf "\n >>> Please type username:"
	1968	printf "\n >>> "
	1969	read remote_username
	1970	done
	1971	mc="$mc -u$remote_username"
	1972	fi
	1973
[892]	1974	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
	1975	if [[ "$login_init_cmd" != "" ]]
	1976	then
	1977	export init_cmds="${login_init_cmd};"
	1978	fi
[221]	1979
[892]	1980
[493]	1981	# set module load command and export for subjob
	1982	if [[ "$modules" != "" ]]
	1983	then
[678]	1984	if [[ $host = lctit ]]
	1985	then
	1986	export module_calls=". $modules"
	1987	else
	1988	export module_calls="module load ${modules};"
	1989	fi
[493]	1990	fi
	1991
[683]	1992	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
[562]	1993	if [[ $host = lcsgib \|\| $host = lcsgih ]]
[555]	1994	then
	1995	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
	1996	then
[562]	1997	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
[555]	1998	fi
[721]	1999	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
	2000	# then
	2001	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
	2002	# echo "*** module_calls = $module_calls"
	2003	# fi
[555]	2004	fi
[493]	2005
[555]	2006
[221]	2007	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2008	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2009	then
[493]	2010	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
	2011	then
	2012	mpilib=mpt
	2013	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
	2014	then
	2015	mpilib=mvapich
[738]	2016	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
	2017	then
	2018	mpilib=impi
[493]	2019	fi
[221]	2020	fi
	2021
	2022
	2023
[1]	2024	###########################################################################
	2025	# HEADER-AUSGABE
	2026	###########################################################################
	2027
	2028
	2029	calltime=$(date)
	2030	printf "\n"
	2031	# [[ $silent = false ]] && clear
[1101]	2032	printf "#------------------------------------------------------------------------# \n"
	2033	printf "\| %-35s%35s \| \n" "$version" "$calltime"
	2034	printf "\| \| \n"
[1]	2035	spalte1="called on:"; spalte2=$localhost_realname
[1101]	2036	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2037	if [[ $local_compile = false ]]
	2038	then
	2039	if [[ $do_remote = true ]]
	2040	then
	2041	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2042	else
	2043	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2044	fi
	2045	else
	2046	spalte1="compiling test only!"; spalte2=""
	2047	fi
[1101]	2048	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2049	if [[ -n $numprocs ]]
	2050	then
[1106]	2051	if [[ $run_coupled_model = false ]]
	2052	then
	2053	spalte1="number of PEs:"; spalte2=$numprocs
	2054	else
	2055	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
	2056	fi
[1101]	2057	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2058	fi
	2059	if [[ -n $tasks_per_node ]]
	2060	then
	2061	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
[1101]	2062	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2063	fi
[759]	2064	if [[ $maximum_parallel_io_streams != $numprocs ]]
	2065	then
	2066	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
[1101]	2067	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[759]	2068	fi
[622]	2069	if [[ $use_openmp = true ]]
[1]	2070	then
	2071	spalte1="threads per task:"; spalte2="$threads_per_task"
[1101]	2072	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2073	fi
[1101]	2074	printf "\| \| \n"
[1]	2075	if [[ $do_compile = true ]]
	2076	then
[475]	2077	if [[ "$mopts" != "" ]]
	2078	then
[1101]	2079	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
	2080	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2081	zeile=$(echo "$mopts" \| cut -c46-)
[475]	2082	while [[ "$zeile" != "" ]]
	2083	do
	2084	spalte1=""
[1101]	2085	spalte2=$(echo "$zeile" \| cut -c-45)
	2086	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2087	zeile=$(echo "$zeile" \| cut -c46-)
[475]	2088	done
	2089	fi
	2090
[1101]	2091	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
	2092	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2093	zeile=$(echo "$cpp_options" \| cut -c46-)
[1]	2094	while [[ "$zeile" != "" ]]
	2095	do
	2096	spalte1=""
[1101]	2097	spalte2=$(echo "$zeile" \| cut -c-45)
	2098	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2099	zeile=$(echo "$zeile" \| cut -c46-)
[1]	2100	done
	2101
[1101]	2102	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
	2103	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2104	zeile=$(echo "$fopts" \| cut -c46-)
[1]	2105	while [[ "$zeile" != "" ]]
	2106	do
	2107	spalte1=""
[1101]	2108	spalte2=$(echo "$zeile" \| cut -c-45)
	2109	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2110	zeile=$(echo "$zeile" \| cut -c46-)
[1]	2111	done
	2112
[1101]	2113	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
	2114	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2115	zeile=$(echo "$lopts" \| cut -c46-)
[1]	2116	while [[ "$zeile" != "" ]]
	2117	do
	2118	spalte1=""
[1101]	2119	spalte2=$(echo "$zeile" \| cut -c-45)
	2120	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2121	zeile=$(echo "$zeile" \| cut -c46-)
[1]	2122	done
	2123
[1101]	2124	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
	2125	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2126	zeile=$(echo "$modules" \| cut -c46-)
[493]	2127	while [[ "$zeile" != "" ]]
	2128	do
	2129	spalte1=""
[1101]	2130	spalte2=$(echo "$zeile" \| cut -c-45)
	2131	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2132	zeile=$(echo "$zeile" \| cut -c46-)
[493]	2133	done
	2134
[1101]	2135	spalte1="main program:"; spalte2=$mainprog
	2136	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2137	else
	2138	spalte1=executable:; spalte2=$executable
[1101]	2139	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2140	fi
[1101]	2141	printf "\| \| \n"
	2142	spalte1="base name of files:"; spalte2=$fname
	2143	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2144	if [[ $fname != $afname ]]
	2145	then
[1101]	2146	spalte1="base name of input files:"; spalte2=$afname
	2147	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2148	fi
[1101]	2149	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
	2150	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2151	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
	2152	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2153
[1106]	2154	if [[ "$ocean_file_appendix" = true ]]
	2155	then
	2156	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
	2157	fi
	2158
[1]	2159	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2160	then
	2161	spalte1="memory demand / PE":; spalte2="$memory MB"
[1101]	2162	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2163	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
[1101]	2164	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2165	fi
	2166
	2167	if [[ $do_compile = true ]]
	2168	then
[1101]	2169	printf "\| \| \n"
	2170	printf "\| Files to be compiled: \| \n"
[1]	2171	zeile=$source_list
	2172	while [[ "$zeile" != "" ]]
	2173	do
[1101]	2174	linestart=$(echo $zeile \| cut -c-70)
	2175	printf "\| %-70s \| \n" "$linestart"
	2176	zeile=$(echo "$zeile" \| cut -c71-)
[1]	2177	done
	2178	fi
[1101]	2179	printf "#------------------------------------------------------------------------#"
[1]	2180
	2181
	2182
	2183	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2184	if [[ $do_trace = true ]]
	2185	then
	2186	(( i = 0 ))
	2187	while (( i < iin ))
	2188	do
	2189	(( i = i + 1 ))
	2190	if (( i == 1 ))
	2191	then
	2192	printf "\n\n >>> INPUT-file assignments:\n"
	2193	fi
	2194	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2195	done
	2196	(( i = 0 ))
	2197	while (( i < iout ))
	2198	do
	2199	(( i = i + 1 ))
	2200	if (( i == 1 ))
	2201	then
	2202	printf "\n\n >>> OUTPUT-file assignments:\n"
	2203	fi
	2204	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2205	done
	2206	(( i = 0 ))
	2207	while (( i < iic ))
	2208	do
	2209	(( i = i + 1 ))
	2210	if (( i == 1 ))
	2211	then
	2212	printf "\n\n >>> INPUT-commands:\n"
	2213	fi
	2214	printf "\n ${in_command[$i]}"
	2215	done
	2216	(( i = 0 ))
	2217	while (( i < ioc ))
	2218	do
	2219	(( i = i + 1 ))
	2220	if (( i == 1 ))
	2221	then
	2222	printf "\n\n >>> OUTPUT-commands:\n"
	2223	fi
	2224	printf "\n ${out_command[$i]}"
	2225	done
	2226	fi
	2227
	2228
	2229	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2230	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2231	then
	2232	antwort=dummy
	2233	printf "\n\n"
[1101]	2234	printf " >>> everything o.k. (y/n) ? "
	2235	while read antwort
[1]	2236	do
[1101]	2237	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2238	then
	2239	printf " >>> everything o.k. (y/n) ? "
	2240	else
	2241	break
	2242	fi
[1]	2243	done
	2244	if [[ $antwort = n \|\| $antwort = N ]]
	2245	then
	2246	locat=user_abort; (( iec = 0 )); exit
	2247	fi
	2248	if [[ $do_batch = true ]]
	2249	then
	2250	printf " >>> batch-job will be created and submitted"
	2251	else
	2252	if [[ $local_compile = false ]]
	2253	then
	2254	printf " >>> MRUN will now continue to execute on this machine"
	2255	else
	2256	printf " >>> a test compilation will now be carried out on this machine"
	2257	fi
	2258	fi
	2259	fi
	2260
[841]	2261
[1101]	2262	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
	2263	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
[841]	2264	check_depository="${working_directory}/trunk/UTIL"
	2265	check_sources="${working_directory}/tmp_check_namelist_files"
[818]	2266	skip_check=false
[841]	2267
[1101]	2268	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
[920]	2269	if [[ ! -f $check_depository/check_namelist_files.tar ]]
[841]	2270	then
[1101]	2271	skip_check=true
	2272	reason="run on remote host or parameter file check has not been compiled."
[920]	2273	fi
	2274	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
	2275	then
[1101]	2276	skip_check=true
	2277	reason="parameter file check has not been compiled."
[892]	2278	fi
[841]	2279
[1101]	2280	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
[892]	2281	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
	2282	then
[1101]	2283	skip_check=true
	2284	reason="serial run."
[841]	2285	fi
	2286
[1101]	2287	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
	2288	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
	2289	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
	2290	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
[892]	2291	if [[ $check_namelist_files == false ]]
[807]	2292	then
[1101]	2293	skip_check=true
	2294	reason="-z option set."
[815]	2295	fi
[892]	2296
	2297	if [[ $fromhost != $localhost ]]
[815]	2298	then
[1101]	2299	skip_check=true
	2300	reason="submitting host is local host."
[892]	2301	fi
[1]	2302
[892]	2303	if [[ $run_coupled_model == true ]]
	2304	then
	2305	skip_check=true
	2306	reason="coupled run."
	2307	fi
[1]	2308
[892]	2309	if [[ $restart_run == true ]]
	2310	then
	2311	skip_check=true
	2312	reason="restart run."
	2313	fi
[807]	2314
[1101]	2315	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
[1122]	2316	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
	2317	last_char=`echo $filename_input \| cut -c $last_char_int`
[892]	2318	if [[ "$last_char" == "f" ]]
	2319	then
	2320	skip_check=true
[1069]	2321	reason="restart run."
[892]	2322	fi
[807]	2323
[892]	2324	if [[ $skip_check == false ]]
	2325	then
	2326	tmp_check=${working_directory}/tmp_check
[841]	2327
[1101]	2328	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
	2329	# NOT NECESSARILY REQUIRED
[818]	2330	line=""
	2331	found=false
[892]	2332	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
[818]	2333	while read line1
	2334	do
	2335	line="$line1"
	2336	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2337	then
	2338	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
	2339	found=true
	2340	fi
	2341	done < $tmp_check
[807]	2342
[818]	2343	if [[ $found = false ]]
	2344	then
	2345	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
	2346	fi
	2347
[807]	2348	rm -rf ${working_directory}/tmp_check
	2349
[1101]	2350	# CHECK IF THE A P3DF FILE MUST BE CHECKED
[807]	2351	for item in $input_list
	2352	do
[892]	2353	if [[ "$item" == "restart" ]]
[807]	2354	then
	2355	check_restart=1
	2356	else
	2357	check_restart=0
	2358	fi
	2359	done
	2360
[1101]	2361	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
	2362	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
[807]	2363	then
[920]	2364	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
[807]	2365	locat=check_namelist; exit
	2366	fi
	2367
[1101]	2368	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
[807]	2369	if [[ $check_restart == 1 ]]
	2370	then
[892]	2371
[920]	2372	filenamef="${filename_input}f"
[892]	2373	if [[ ! -f $filenamef ]]
[807]	2374	then
[892]	2375	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
[807]	2376	check_restart=0
	2377	answer=dummy
	2378	printf "\n\n"
	2379
[818]	2380	if [[ $silent == false ]]
[807]	2381	then
[818]	2382	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2383	do
	2384	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2385	read answer
	2386	done
	2387	if [[ $answer = a \|\| $answer = A ]]
	2388	then
	2389	printf "\n +++ Aborting...."
	2390	locat=normal; exit
	2391	fi
[807]	2392	fi
	2393	else
	2394	check_restart=1
	2395	fi
	2396	fi
	2397
[1101]	2398	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
[807]	2399	mkdir $check_sources
	2400	cd $check_sources
	2401
[892]	2402
[1101]	2403	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
[892]	2404	if [[ -d $add_source_path ]]
[807]	2405	then
	2406	printf "\n\n *** copying files from $check_depository"
	2407	cp $check_depository/check_namelist_files.tar ./
	2408
	2409	printf "\n\n *** untar of makefile and source files in $check_sources"
	2410	tar -xf check_namelist_files.tar > /dev/null 2>&1
	2411
	2412	printf "\n\n *** adding user code."
[892]	2413	cp $add_source_path/* ./
[807]	2414	touch check_namelist_files.f90
	2415
[1101]	2416	# GET COMPILER OPTIONS AND PERFORM MAKE
[807]	2417	printf "\n\n *** compiling code if necessary...\n"
[1045]	2418
[1101]	2419	# workaround for batch jobs on local machine (lcxe6)
[1045]	2420	if [[ $do_batch == true && $do_remote == false ]]
	2421	then
	2422	eval $init_cmds
	2423	fi
	2424
[1101]	2425	# GET CHECK OPTIONS
[1083]	2426	line=""
	2427	found=false
	2428
	2429	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
	2430
	2431	while read line1
	2432	do
	2433
	2434	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
	2435	then
	2436	line="$line1"
	2437	fi
	2438
	2439	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2440	then
[1101]	2441	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
	2442	line="$line "
[1083]	2443	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
	2444	found=true
	2445	fi
	2446
	2447	done < $tmp_check
	2448	copts_check="$copts_check -D__check -D__parallel"
	2449
[807]	2450	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
	2451
[1101]	2452	# GET MAKE OUTPUT
[807]	2453	if [[ $? != 0 ]]
	2454	then
[815]	2455	printf "\n +++ error during make."
	2456	answer=dummy
	2457	printf "\n\n"
[818]	2458	if [[ $silent == false ]]
[815]	2459	then
[818]	2460	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2461	do
	2462	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2463	read answer
	2464	done
	2465	if [[ $answer = a \|\| $answer = A ]]
	2466	then
	2467	printf "\n +++ Aborting..."
	2468	rm -rf $check_sources
	2469	locat=normal; exit
	2470	else
	2471	skip_check=true
	2472	fi
[815]	2473	else
	2474	skip_check=true
	2475	fi
[807]	2476	fi
	2477	else
	2478	cp $PALM_BIN/check_namelist_files.x ./
	2479	fi
	2480
[920]	2481	cp $filename_input ./PARIN
[807]	2482	if [[ $check_restart == 1 ]]
	2483	then
[892]	2484	cp $filenamef ./PARINF
[807]	2485	fi
	2486
[892]	2487	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
[818]	2488	then
	2489	printf "\n *** adding topography data"
[892]	2490	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
[818]	2491
[1101]	2492	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
	2493	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
	2494	# WHICH REQUIRE SUFFICIENT MEMORY
[818]	2495	ulimit -s unlimited
	2496	fi
	2497
[1101]	2498	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
[807]	2499	cat > ENVPAR << %%END%%
[823]	2500	&envpar run_identifier = '$fname', host = '$host',
[807]	2501	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2502	maximum_parallel_io_streams = $maximum_parallel_io_streams,
	2503	maximum_cpu_time_allowed = ${cpumax}.,
	2504	revision = '$global_revision',
	2505	local_dvrserver_running = $local_dvrserver_running /
	2506
	2507	%%END%%
	2508
[1101]	2509	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
	2510	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
	2511	then
[807]	2512	printf "\n +++ WARNING: check_namelist_files.x not found."
	2513	answer=dummy
	2514	printf "\n\n"
[818]	2515
	2516	if [[ $silent == false ]]
[807]	2517	then
[818]	2518	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2519	do
	2520	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2521	read answer
	2522	done
	2523	if [[ $answer = a \|\| $answer = A ]]
	2524	then
	2525	printf "\n +++ Aborting..."
	2526	rm -rf $check_sources
	2527	locat=normal; exit
	2528	else
[1101]	2529	printf "\n *** skipping parameter file check."
[818]	2530	fi
	2531	fi
	2532
[815]	2533	elif [[ $skip_check == false ]]
	2534	then
[1101]	2535	# STARTING THE PARAMETER FILE CHECK
[807]	2536	printf "\n\n *** starting parameter file check..."
	2537
[1101]	2538	# CHECKING THE P3D FILE
[920]	2539	printf "\n\n (1) checking $filename_input"
[931]	2540	echo "$numprocs 0 0" > VARIN
[807]	2541	errors=`./check_namelist_files.x < VARIN 2>&1`
	2542
	2543	check_error=false
	2544	if [[ "$errors" == "" ]]
	2545	then
	2546	printf " --> o.k."
	2547	else
	2548	printf " --> failed."
	2549	check_error=true
	2550	printf "\n\n $errors"
	2551	fi
	2552
[1101]	2553	# CHECKING THE PD3F FILE IF NECESSARY
[807]	2554	if [[ $check_restart == 1 && $check_error == false ]]
	2555	then
[892]	2556	printf "\n\n (2) checking $filenamef"
[807]	2557
[1101]	2558	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
	2559	# IN &INIPAR LIST
[807]	2560	found=false
[1101]	2561	cat PARINF \| while read line
[807]	2562	do
	2563	line=$(echo $line\|sed 's/ //g')
	2564	if [[ $line == "&inipar" ]]
	2565	then
	2566	start_search=true
	2567	fi
	2568
	2569	if [[ $start_search == true ]]
	2570	then
	2571	if [[ $line == "initializing_actions='read_restart_data'" ]]
	2572	then
	2573	found=true
	2574	break
	2575	fi
	2576	fi
	2577
	2578	if [[ $line == "/" ]]
	2579	then
	2580	start_search=false
	2581	fi
	2582
	2583	done
	2584
	2585	if [[ $found = false ]]
	2586	then
	2587	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
	2588	printf "\n in &inipar list in $fname$p3df_suffix."
	2589	rm -rf $check_sources
	2590	locat=check_namelist; exit
	2591	fi
	2592
[1101]	2593	# READ max_user_pr FROM FILES
[931]	2594	if [[ -f parin_for_check ]]
	2595	then
	2596	read max_pr_user < parin_for_check
	2597	else
	2598	max_user_pr=0
	2599	fi
	2600
	2601	echo "$numprocs 1 $max_pr_user" > VARIN
[807]	2602	errors=`./check_namelist_files.x < VARIN 2>&1`
	2603
	2604	if [[ "$errors" == "" ]]
	2605	then
	2606	printf " --> o.k."
	2607	else
	2608	printf " --> failed."
	2609	check_error=true
	2610	printf "\n\n $errors"
	2611	fi
	2612	fi
	2613
[1101]	2614	# REPORT ERRORS AND CONTINUE/EXIT
[807]	2615	if [[ $check_error == true ]]
	2616	then
	2617	printf "\n +++ errors found in the parameter file!\n"
	2618	answer=dummy
	2619	printf "\n\n"
	2620
	2621	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2622	do
[1101]	2623	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2624	read answer
[807]	2625	done
	2626
	2627	if [[ $answer = a \|\| $answer = A ]]
	2628	then
	2629	printf "\n +++ Aborting..."
	2630	rm -rf $check_sources
	2631	locat=normal; exit
	2632	fi
	2633	else
	2634	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
	2635	fi
	2636	rm -rf $check_sources
	2637	fi
	2638	else
[1103]	2639	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
[807]	2640	fi
	2641
[818]	2642	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
	2643	rm -rf $check_sources
[807]	2644	cd $working_directory
	2645
[892]	2646
[807]	2647	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2648	# CHENDE AKTIONEN DURCHGEFUEHRT
[1]	2649	if [[ $do_batch = false ]]
	2650	then
	2651
	2652
	2653	# TEMPORAEREN KATALOG ERZEUGEN
	2654	mkdir -p $TEMPDIR
	2655	chmod go+rx $TEMPDIR
	2656	tmpcreate=true
	2657
[493]	2658	# set striping on lustre file system
	2659	# if [[ $localhost = lcsgih ]]
	2660	# then
	2661	# lfs setstripe -s 8192k -c 16 $TEMPDIR
	2662	# lfs getstripe $TEMPDIR
	2663	# fi
[1]	2664
[493]	2665
[1]	2666	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2667	# TEMPORAERES VERZEICHNIS KOPIEREN
	2668	if [[ $do_compile = true ]]
	2669	then
	2670
	2671	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2672	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2673	if [[ $localhost = nech ]]
	2674	then
	2675	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2676	if mkdir -p $TEMPDIR_COMPILE
	2677	then
	2678	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2679	printf "\n is generated as temporary directory for cross compiling\n"
	2680	else
	2681	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2682	printf "\n needed for cross compilation failed"
	2683	locat=compile
	2684	exit
	2685	fi
	2686	else
	2687	TEMPDIR_COMPILE=$TEMPDIR
	2688	fi
	2689
	2690
[82]	2691	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2692	line=""
	2693	grep "%depository_path" $config_file > tmp_mrun
	2694	while read line
	2695	do
	2696	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2697	then
	2698	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2699	then
[82]	2700	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2701	fi
[82]	2702	fi
	2703	done < tmp_mrun
[1]	2704
[82]	2705	line=""
	2706	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2707	while read line
	2708	do
	2709	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2710	then
[211]	2711	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2712	then
	2713	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2714	fi
[1]	2715	fi
[82]	2716	done < tmp_mrun
[1]	2717
[82]	2718	if [[ "$local_depository_path" = "" ]]
	2719	then
	2720	if [[ "$global_depository_path" != "" ]]
[1]	2721	then
[82]	2722	local_depository_path=$global_depository_path
[1]	2723	else
[82]	2724	printf "\n\n +++ no depository path found in configuration file"
	2725	printf "\n for local host \"$localhost\" "
	2726	printf "\n please set \"\%depository_path\" in configuration file\n"
	2727	locat=config_file; exit
[1]	2728	fi
[82]	2729	fi
	2730	eval local_depository_path=$local_depository_path
[215]	2731	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2732	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2733
[215]	2734
[1101]	2735	basename=`echo $mainprog \| cut -f1 -d"."`
[82]	2736	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2737	if [[ ! -f $make_depository ]]
	2738	then
	2739	printf "\n"
	2740	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2741	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2742	else
	2743	cp $make_depository $TEMPDIR_COMPILE
[1]	2744	cd $TEMPDIR_COMPILE
[82]	2745	tar -xf $make_depository > /dev/null 2>&1
[1]	2746	cd - > /dev/null
	2747	fi
[82]	2748
	2749	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2750
[1]	2751	else
[475]	2752
[1]	2753	cp $executable ${TEMPDIR}/a.out
[475]	2754
[1]	2755	fi
	2756
	2757
	2758	# WECHSEL IN TEMPORAEREN KATALOG
[475]	2759	cd $TEMPDIR
[1]	2760	printf "\n *** changed to temporary directory: $TEMPDIR"
	2761
	2762
	2763	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2764	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2765	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2766	# ERMITTELN
	2767	(( i = 0 ))
	2768	while (( i < iout ))
	2769	do
	2770	(( i = i + 1 ))
	2771	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2772	then
	2773	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2774	else
	2775	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2776	fi
	2777	done
	2778
	2779
	2780	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2781	if [[ $do_compile = true ]]
	2782	then
	2783
	2784
	2785	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2786	printf "\n\n\n *** compilation starts \n$striche\n"
	2787	printf " *** compilation with make using following options:\n"
[211]	2788	printf " make depository: $make_depository"
[475]	2789	if [[ "$mopts" != "" ]]
	2790	then
	2791	printf " make options: $mopts\n"
	2792	fi
[82]	2793	printf " compilername: $compiler_name\n"
[475]	2794	printf " compiler options: $fopts\n"
[493]	2795	printf " preprocessor directives: $cpp_options \n"
	2796	printf " linker options: $lopts \n"
	2797	if [[ "$modules" != "" ]]
	2798	then
	2799	printf " modules to be load: $modules \n"
	2800	fi
[82]	2801	printf " source code files: $source_list \n"
	2802
	2803	if [[ $localhost = nech ]]
[1]	2804	then
[892]	2805	# init_cmds was ". /SX/opt/etc/initsx.sh;"
[1094]	2806	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[82]	2807	cp $TEMPDIR_COMPILE/a.out .
	2808	[[ $? != 0 ]] && compile_error=true
	2809	rm -rf $TEMPDIR_COMPILE
[312]	2810	elif [[ $localhost = ibmh ]]
	2811	then
[325]	2812	printf " compiler is called via ssh on \"plogin1\" \n"
[1094]	2813	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[312]	2814	[[ ! -f a.out ]] && compile_error=true
	2815	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[197]	2816	elif [[ $localhost = lcsgib ]]
	2817	then
[540]	2818	printf " compiler is called via ssh on \"bicegate0\" \n"
[1094]	2819	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2820	[[ ! -f a.out ]] && compile_error=true
	2821	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2822	elif [[ $localhost = lcsgih ]]
	2823	then
[738]	2824	printf " compiler is called via ssh on \"hicegate0\" \n"
[1094]	2825	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2826	[[ ! -f a.out ]] && compile_error=true
	2827	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[755]	2828	elif [[ $localhost = lcflow ]]
	2829	then
	2830	printf " compiler is called via ssh on \"flow\" \n"
[1094]	2831	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[755]	2832	[[ ! -f a.out ]] && compile_error=true
	2833	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2834	else
[920]	2835	[[ "$init_cmds" != "" ]] && eval $init_cmds
[493]	2836	[[ "$module_calls" != "" ]] && eval $module_calls
[475]	2837	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
[807]	2838
[82]	2839	fi
[1]	2840
	2841	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2842	then
	2843	printf "\n +++ error occured while compiling or linking"
	2844	locat=compile
[181]	2845
[182]	2846	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2847	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2848	# then
[181]	2849	exit
[197]	2850	# else
	2851	# locat=normal
	2852	# fi
[1]	2853	else
	2854	printf "$striche\n *** compilation finished \n"
	2855	fi
	2856	fi
	2857
	2858
	2859	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2860	if [[ $local_compile = true ]]
	2861	then
	2862	cd $HOME
	2863	rm -rf $TEMPDIR
	2864	locat=local_compile; exit
	2865	fi
	2866
	2867
	2868	# BEREITSTELLEN DER INPUT-DATEIEN
	2869	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2870	(( i = 0 ))
	2871	while (( i < iin ))
	2872	do
	2873	(( i = i + 1 ))
	2874	if (( i == 1 ))
	2875	then
	2876	printf "\n\n *** providing INPUT-files:\n$striche"
	2877	fi
	2878
	2879
	2880	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2881	if [[ "${transin[$i]}" = unavailable ]]
	2882	then
	2883	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2884	then
	2885	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2886	printf "\n is not available!"
	2887	else
	2888	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2889	printf "\n is not available!"
	2890	fi
	2891	continue
	2892	fi
	2893
	2894	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2895	files_for_pes=false; datentyp=file
	2896	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2897	then
	2898	files_for_pes=true; datentyp=directory
	2899	actionin[$i]=""
	2900	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2901	then
	2902	actionin[$i]=""
	2903	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2904	then
	2905	files_for_pes=true; datentyp=directory
	2906	actionin[$i]="ar"
	2907	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2908	then
	2909	actionin[$i]="ar"
	2910	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2911	then
	2912	files_for_pes=true; datentyp=directory
	2913	actionin[$i]="fl"
	2914	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2915	then
	2916	actionin[$i]="fl"
	2917	fi
	2918
	2919	if [[ $files_for_pes = true ]]
	2920	then
	2921	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2922	else
	2923	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2924	fi
	2925
	2926	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2927	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2928	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2929	# SERVER ZU HOLEN
	2930	if [[ "${actionin[$i]}" = fl ]]
	2931	then
	2932	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2933	if [[ $files_for_pes = false ]]
	2934	then
	2935	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2936	then
	2937	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2938	got_tmp[$i]=true
	2939	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2940	then
	2941	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2942	printf "\n *** trying to use backup copy in \"$WORK\" "
	2943	cp $WORK/${frelin[$i]} ${localin[$i]}
	2944	else
	2945	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2946	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2947	printf "\n *** trying to get copy from archive"
	2948	actionin[$i]=ar
	2949	fi
	2950	else
	2951	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2952	then
	2953	mkdir ${localin[$i]}
[149]	2954	cd $tmp_data_catalog/${frelin[$i]}
	2955	for file in $(ls *)
	2956	do
	2957	ln $file $TEMPDIR/${localin[$i]}
	2958	done
	2959	cd $TEMPDIR
[1]	2960	got_tmp[$i]=true
	2961	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2962	then
	2963	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2964	printf "\n *** trying to use backup copy in \"$WORK\" "
	2965	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2966	else
	2967	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2968	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2969	printf "\n *** trying to get copy from archive"
	2970	actionin[$i]=ar
	2971	fi
	2972	fi
	2973	fi
	2974
	2975
	2976	# DATEI LIEGT AUF ARCHIV-SERVER
	2977	if [[ "${actionin[$i]}" = ar ]]
	2978	then
	2979
	2980	if [[ $files_for_pes = false ]]
	2981	then
	2982	printf "\n file will be restored from archive-system ($archive_system)!"
	2983	else
	2984	printf "\n directory will be restored from archive-system ($archive_system)!"
	2985	fi
	2986
	2987	file_restored=false
	2988
	2989	if [[ $archive_system = asterix ]]
	2990	then
	2991	do_stagein=true
	2992	(( stagein_anz = 0 ))
	2993	while [[ $do_stagein = true ]]
	2994	do
	2995	if [[ $files_for_pes = false ]]
	2996	then
	2997	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2998	else
	2999	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	3000	fi
	3001	cat STAGEIN_OUTPUT
	3002	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	3003	then
	3004	file_restored=true
	3005	do_stagein=false
	3006	else
	3007	(( stagein_anz = stagein_anz + 1 ))
	3008	if (( stagein_anz == 10 ))
	3009	then
	3010	printf "\n +++ stagein stoped after 10 tries"
	3011	locat=stage
	3012	exit
	3013	fi
	3014	printf "\n +++ restoring from archive failed, trying again:"
	3015	sleep 900
	3016	fi
	3017	done
	3018	elif [[ $archive_system = DMF ]]
	3019	then
	3020	if [[ $files_for_pes = false ]]
	3021	then
	3022	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	3023	locat=DMF
	3024	exit
	3025	else
	3026	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	3027	cp -r $ARCHIVE/${frelin[$i]} $PWD
	3028	file_restored=true
	3029	fi
	3030	elif [[ $archive_system = tivoli ]]
	3031	then
	3032	if [[ $files_for_pes = false ]]
	3033	then
[399]	3034	if [[ $localhost = lcsgih ]]
[1]	3035	then
[1094]	3036	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	3037	else
[1094]	3038	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	3039	fi
	3040	else
	3041	(( inode = 0 ))
	3042	while (( inode < nodes ))
	3043	do
[399]	3044	if [[ $localhost = lcsgih ]]
[1]	3045	then
[1094]	3046	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	3047	else
[1094]	3048	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	3049	fi
	3050	(( inode = inode + 1 ))
	3051	done
	3052	fi
	3053	file_restored=true
	3054	elif [[ $archive_system = ut ]]
	3055	then
	3056	if [[ $files_for_pes = false ]]
	3057	then
	3058	cp $UT/${frelin[$i]} .
	3059	else
	3060	(( inode = 0 ))
	3061	while (( inode < nodes ))
	3062	do
	3063	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	3064	(( inode = inode + 1 ))
	3065	done
	3066	fi
	3067	file_restored=true
	3068	else
	3069	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	3070	locat=rearchive
	3071	exit
	3072	fi
	3073
	3074	if [[ $file_restored = true ]]
	3075	then
	3076
	3077	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	3078	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	3079	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	3080	if [[ $files_for_pes = false ]]
	3081	then
	3082	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	3083	else
	3084	mkdir $tmp_data_catalog/${frelin[$i]}
	3085	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	3086	fi
	3087	got_tmp[$i]=true
	3088
	3089	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	3090	mv ${frelin[$i]} ${localin[$i]}
	3091
	3092	fi
	3093	fi
	3094
	3095
	3096	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	3097	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	3098	then
	3099
	3100	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	3101	then
	3102
	3103	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	3104	printf "\n file will be provided for $numprocs processors"
	3105	mkdir ${localin[$i]}
	3106	ival=$numprocs
	3107	(( ii = 0 ))
	3108	while (( ii <= ival-1 ))
	3109	do
	3110	if (( ii < 10 ))
	3111	then
	3112	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	3113	elif (( ii < 100 ))
	3114	then
	3115	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	3116	elif (( ii < 1000 ))
	3117	then
	3118	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	3119	else
	3120	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	3121	fi
	3122	(( ii = ii + 1 ))
	3123	done
	3124
	3125	else
	3126
	3127	if [[ $files_for_pes = true ]]
	3128	then
	3129
	3130	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	3131	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	3132	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	3133	# PER MOVE UMBENANNT WERDEN
	3134	printf "\n providing $numprocs files for the respective processors"
	3135	mkdir ${localin[$i]}
[183]	3136	if [[ $link_local_input = true ]]
	3137	then
	3138	printf " using ln -f\n"
	3139	cd ${absnamein[$i]}
	3140	for file in $(ls *)
	3141	do
	3142	ln -f $file ${localin[$i]}
	3143	done
	3144	cd $TEMPDIR
	3145	fi
	3146	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	3147	if [[ ! -f "${localin[$i]}/_0000" ]]
	3148	then
	3149	if [[ $link_local_input = true ]]
	3150	then
	3151	printf " ln failed for .../_0000, using cp...\n"
	3152	fi
	3153	cp -r ${absnamein[$i]}/* ${localin[$i]}
	3154	fi
[1]	3155
	3156	else
	3157	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	3158	if [[ $link_local_input = true ]]
	3159	then
	3160	printf " using ln -f\n"
	3161	ln -f ${absnamein[$i]} ${localin[$i]}
	3162	fi
	3163	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	3164	if [[ ! -f "${localin[$i]}" ]]
	3165	then
	3166	if [[ $link_local_input = true ]]
	3167	then
	3168	printf " ln failed, using cp...\n"
	3169	fi
	3170	cp ${absnamein[$i]} ${localin[$i]}
	3171	fi
[1]	3172	fi
	3173	fi
	3174	fi
	3175
	3176	done
	3177	if (( i != 0 ))
	3178	then
	3179	printf "\n$striche\n *** all INPUT-files provided \n"
	3180	fi
	3181
	3182
	3183	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	3184	(( i = 0 ))
	3185	while (( i < iic ))
	3186	do
	3187	(( i = i + 1 ))
	3188	if (( i == 1 ))
	3189	then
	3190	printf "\n\n *** execution of INPUT-commands:\n$striche"
	3191	fi
	3192	printf "\n >>> ${in_command[$i]}"
	3193	eval ${in_command[$i]}
	3194	if (( i == iic ))
	3195	then
	3196	printf "\n$striche\n"
	3197	fi
	3198	done
	3199
	3200
	3201	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	3202	cpurest=${cpumax}.
	3203
	3204
[260]	3205	# START DVR STREAMING SERVER
	3206	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3207	then
	3208	if [[ "$dvr_server" != "" ]]
	3209	then
	3210
	3211	printf "\n\n *** preparing the dvr streaming server configuration file"
	3212
	3213	# Check, if a dvr server is already running
	3214	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	3215	if [[ "$running_dvrserver_id" != "" ]]
	3216	then
	3217
[261]	3218	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	3219	printf "\n This server is used instead starting a new one!"
[261]	3220	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	3221
	3222	else
	3223
	3224	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	3225	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	3226	then
	3227	cp ${PALM_BIN}/.dvrserver.config .
	3228
	3229	# Entering the BASEDIR, UID and GID into this file
	3230	user_id=`id -u`
	3231	group_id=`id -g`
	3232	# & is needed as seperator, because TEMPDIR contains /
	3233	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	3234	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	3235	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	3236	mv .dvrserver.3 .dvrserver.config
	3237	rm .dvrserver.1 .dvrserver.2
	3238
	3239	# Start dvr server in background, get his id and print on terminal
	3240	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	3241	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	3242	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	3243	local_dvrserver_running=.TRUE.
	3244	else
	3245	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	3246	printf "\n \"$PALM_BIN\" "
	3247	locat=dvr
	3248	exit
	3249	fi
	3250
	3251	fi
	3252
	3253	else
	3254	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	3255	fi
	3256	fi
	3257
	3258
	3259	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	3260	# LESEN VON PALM)
	3261	cat > ENVPAR << %%END%%
	3262	&envpar run_identifier = '$fname', host = '$localhost',
	3263	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
[759]	3264	maximum_parallel_io_streams = $maximum_parallel_io_streams,
[260]	3265	maximum_cpu_time_allowed = ${cpumax}.,
	3266	revision = '$global_revision',
	3267	local_dvrserver_running = $local_dvrserver_running /
	3268
	3269	%%END%%
	3270
	3271
[1]	3272	# PROGRAMMSTART
	3273	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	3274	PATH=$PATH:$TEMPDIR
	3275
[359]	3276	# MPI debug option (argument checking, slows down execution due to increased latency)
	3277	if [[ "$mpi_debug" = true ]]
	3278	then
	3279	export MPI_CHECK_ARGS=1
	3280	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	3281	fi
	3282
[693]	3283	if [[ "$totalview" = true ]]
	3284	then
	3285	printf "\n *** totalview debugger will be used"
	3286	tv_opt="-tv"
	3287	else
	3288	tv_opt=""
	3289	fi
	3290
[1]	3291	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	3292	then
	3293	if [[ "$ENVIRONMENT" = BATCH ]]
	3294	then
[211]	3295	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	3296	then
	3297	printf "\n +++ debug is allowed in interactive mode only"
	3298	locat=debug
	3299	exit
	3300	fi
[1]	3301	fi
[1096]	3302	if [[ $localhost = ibmh ]]
[1]	3303	then
	3304
	3305	# SETUP THE IBM MPI ENVIRONMENT
	3306	export MP_SHARED_MEMORY=yes
	3307	export AIXTHREADS_SCOPE=S
	3308	export OMP_NUM_THREADS=$threads_per_task
	3309	export AUTHSTATE=files
	3310	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3311
	3312	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	3313	export MP_ADAPTER_USE=shared
	3314	export MP_CPU_USE=multiple
	3315	export MP_TIMEOUT=1200
	3316
	3317	unset MP_TASK_AFFINITY
	3318
	3319	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	3320	#(( ii = 1 ))
	3321	#while (( ii <= $numprocs ))
	3322	#do
	3323	# echo $localhost_realname >> hostfile
	3324	# (( ii = ii + 1 ))
	3325	#done
	3326	#export MP_HOSTFILE=hostfile
	3327
	3328	if [[ "$LOADLBATCH" = yes ]]
	3329	then
	3330	totalview poe a.out $ROPTS
	3331	else
	3332	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3333	export TVDSVRLAUNCHCMD=ssh
	3334	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3335	fi
[211]	3336	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	3337	then
	3338	# CURRENTLY NO DEBUGGER ON LCSGI
	3339	if [[ $run_coupled_model = true ]]
	3340	then
	3341	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	3342	locat=debug
	3343	exit
[223]	3344	else
	3345	echo "no_coupling" > runfile_atmos
[211]	3346	fi
	3347	(( ii = $numprocs / $threads_per_task ))
	3348	export OMP_NUM_THREADS=$threads_per_task
	3349	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3350	if [[ $threads_per_task != 1 ]]
	3351	then
	3352	printf "\n threads per task: $threads_per_task"
	3353	fi
	3354	printf "\n\n"
[223]	3355	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3356	then
	3357	# export MPI_LAUNCH_TIMEOUT=360
	3358	if [[ "$totalview" = true ]]
	3359	then
	3360	printf "\n running totalview debugger"
[693]	3361	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
[223]	3362	else
	3363	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3364	fi
	3365	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3366	then
	3367	# ulimit -s 300000 # A too large stack size causes problems
	3368	# export MV2_NUM_PORTS=2
	3369	# export MV2_CPU_MAPPING=0:1:2:3
[362]	3370	if [[ "$totalview" = true ]]
	3371	then
	3372	printf "\n running totalview debugger"
[693]	3373	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
[362]	3374	else
	3375	mpiexec ./a.out $ROPTS < runfile_atmos
	3376	fi
[223]	3377	fi
[1]	3378	else
	3379	printf "\n +++ no debug available on \"$localhost\" "
	3380	printf "\n or not implemented in mrun so far"
	3381	locat=debug
	3382	exit
	3383	fi
[622]	3384
	3385	# end debug mode
[1]	3386	else
[622]	3387
	3388	# normal execution
[1]	3389	if [[ -n $numprocs ]]
	3390	then
	3391	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	3392	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	3393	then
	3394	# SETUP THE IBM MPI ENVIRONMENT
[693]	3395	if [[ $host != ibmh && $host != ibmkisti ]]
[312]	3396	then
	3397	export MP_SHARED_MEMORY=yes
	3398	export AIXTHREAD_SCOPE=S
	3399	export OMP_NUM_THREADS=$threads_per_task
	3400	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	3401	export AUTHSTATE=files
	3402	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3403	# export MP_PRINTENV=yes
[1]	3404
[312]	3405	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	3406	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	3407	export MP_WAIT_MODE=poll
	3408	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	3409	fi
[693]	3410
	3411	if [[ $host = ibmkisti ]]
	3412	then
	3413	export LANG=en_US
	3414	export MP_SHARED_MEMORY=yes
[696]	3415	if [[ $threads_per_task = 1 ]]
	3416	then
	3417	export MP_SINGLE_THREAD=yes
	3418	export MEMORY_AFFINITY=MCM
	3419	else
	3420	export OMP_NUM_THREADS=$threads_per_task
	3421	fi
[693]	3422	fi
	3423
[1]	3424	if [[ "$LOADLBATCH" = yes ]]
	3425	then
	3426	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	3427	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3428	then
[102]	3429	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3430	else
[343]	3431	if [[ $run_coupled_model = false ]]
	3432	then
	3433	if [[ "$ocean_file_appendix" = true ]]
	3434	then
	3435	echo "precursor_ocean" > runfile_atmos
	3436	else
	3437	echo "precursor_atmos" > runfile_atmos
	3438	fi
	3439	else
	3440	(( iia = $numprocs_atmos / $threads_per_task ))
	3441	(( iio = $numprocs_ocean / $threads_per_task ))
	3442	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3443	printf "\n using $coupled_mode coupling"
	3444	printf "\n\n"
	3445	echo "coupled_run $iia $iio" > runfile_atmos
	3446	fi
	3447	poe ./a.out $ROPTS < runfile_atmos
[1]	3448	fi
	3449	else
[622]	3450	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
[1]	3451	then
[102]	3452	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[693]	3453	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
[1]	3454	then
	3455	if [[ -f $hostfile ]]
	3456	then
	3457	cp $hostfile hostfile
	3458	else
	3459	(( ii = 1 ))
	3460	while (( ii <= $numprocs ))
	3461	do
	3462	echo $localhost_realname >> hostfile
	3463	(( ii = ii + 1 ))
	3464	done
	3465	fi
	3466	export MP_HOSTFILE=hostfile
[331]	3467	if [[ $run_coupled_model = false ]]
	3468	then
	3469	if [[ "$ocean_file_appendix" = true ]]
	3470	then
	3471	echo "precursor_ocean" > runfile_atmos
	3472	else
	3473	echo "precursor_atmos" > runfile_atmos
	3474	fi
	3475	else
	3476	(( iia = $numprocs_atmos / $threads_per_task ))
	3477	(( iio = $numprocs_ocean / $threads_per_task ))
	3478	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3479	printf "\n using $coupled_mode coupling"
	3480	printf "\n\n"
	3481	echo "coupled_run $iia $iio" > runfile_atmos
	3482	fi
[622]	3483	if [[ $localhost = ibmy ]]
	3484	then
	3485	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3486	else
	3487	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
	3488	fi
[331]	3489
[1]	3490	else
	3491	if [[ "$host_file" = "" ]]
	3492	then
	3493	printf "\n +++ no hostfile given in configuration file"
	3494	locat=config_file
	3495	exit
	3496	else
	3497	eval host_file=$host_file
	3498	fi
	3499	export MP_HOSTFILE=$host_file
[102]	3500	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3501	fi
	3502	fi
[251]	3503	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3504	then
	3505	(( ii = nodes ))
	3506	if [[ $ii = 1 ]]
	3507	then
	3508	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3509	export MPIPROGINF=YES
[61]	3510	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3511	echo "*** execution on single node with mpirun"
[102]	3512	mpirun -np $numprocs ./a.out $ROPTS
[1]	3513	else
	3514	(( i = 0 ))
	3515	while (( i < ii ))
	3516	do
	3517	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3518	(( i = i + 1 ))
	3519	done
	3520
	3521	echo "#!/bin/sh" > mpi_exec_shell
	3522	echo " " >> mpi_exec_shell
	3523	echo "set -u" >> mpi_exec_shell
	3524	echo "F_ERRCNT=0" >> mpi_exec_shell
	3525	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3526	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3527	echo "cpurest=$cpurest" >> mpi_exec_shell
	3528	echo "fname=$fname" >> mpi_exec_shell
	3529	echo "localhost=$localhost" >> mpi_exec_shell
	3530	echo "return_addres=$return_addres" >> mpi_exec_shell
	3531	echo "return_username=$return_username" >> mpi_exec_shell
	3532	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3533	echo "write_binary=$write_binary" >> mpi_exec_shell
	3534	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3535	echo " " >> mpi_exec_shell
	3536	echo "export F_ERRCNT" >> mpi_exec_shell
	3537	echo "export MPIPROGINV" >> mpi_exec_shell
	3538	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3539	echo "export cpurest" >> mpi_exec_shell
	3540	echo "export fname" >> mpi_exec_shell
	3541	echo "export localhost" >> mpi_exec_shell
	3542	echo "export return_addres" >> mpi_exec_shell
	3543	echo "export return_username" >> mpi_exec_shell
	3544	echo "export tasks_per_node" >> mpi_exec_shell
	3545	echo "export write_binary" >> mpi_exec_shell
	3546	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3547	echo " " >> mpi_exec_shell
[102]	3548	echo "exec ./a.out" >> mpi_exec_shell
[1]	3549
	3550	chmod u+x mpi_exec_shell
	3551	export MPIPROGINF=YES
	3552	mpirun -f multinode_config &
	3553	wait
	3554
	3555	fi
[440]	3556	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
[1]	3557	then
	3558
	3559	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3560	# DOES NOT EXIST
[1108]	3561	if [[ $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
[1]	3562	then
[179]	3563	if [[ -f $hostfile ]]
	3564	then
	3565	cp $hostfile hostfile
[746]	3566	(( ii = $numprocs / $threads_per_task ))
[179]	3567	else
	3568	(( ii = 1 ))
	3569	while (( ii <= $numprocs / $threads_per_task ))
	3570	do
	3571	echo $localhost_realname >> hostfile
	3572	(( ii = ii + 1 ))
	3573	done
	3574	fi
	3575	eval zeile=\"`head -n $ii hostfile`\"
	3576	printf "\n *** running on: $zeile"
[1]	3577	fi
[179]	3578
[1]	3579	(( ii = $numprocs / $threads_per_task ))
	3580	export OMP_NUM_THREADS=$threads_per_task
[696]	3581	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3582	if [[ $threads_per_task != 1 ]]
	3583	then
[405]	3584	# increase stack size to unlimited, because large runs
	3585	# may abort otherwise
	3586	ulimit -Ss unlimited
	3587	printf "\n threads per task: $threads_per_task stacksize: unlimited"
[1]	3588	fi
[102]	3589	if [[ $run_coupled_model = false ]]
[1]	3590	then
[291]	3591	if [[ "$ocean_file_appendix" = true ]]
	3592	then
	3593	echo "precursor_ocean" > runfile_atmos
	3594	else
	3595	echo "precursor_atmos" > runfile_atmos
	3596	fi
[102]	3597	printf "\n\n"
[179]	3598	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3599	then
[221]	3600	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3601	then
[366]	3602	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
	3603	# export MPI_DSM_DISTRIBUTE=1
	3604	# MPI_DSM_CPULIST: pin MPI processes to cores
[377]	3605	if [[ $use_openmp = false ]]
	3606	then
[412]	3607	if [[ "$sgi_feature" = ice2 ]]
	3608	then
	3609	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
	3610	else
	3611	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
	3612	fi
[622]	3613	else
	3614	unset MPI_DSM_CPULIST
[377]	3615	fi
[366]	3616	# MPI_IB_RAILS: use both IB rails on ICE2
	3617	export MPI_BUFS_PER_HOST=512
	3618	export MPI_IB_RAILS=2
[369]	3619	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
	3620	export MPI_CONNECTIONS_THRESHOLD=8192
[738]	3621	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
[562]	3622	export MPI_TYPE_DEPTH=20
[738]	3623	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
[683]	3624	export MPI_GROUP_MAX=64
[738]	3625	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
[693]	3626	if [[ $use_openmp = true ]]
	3627	then
	3628	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
	3629	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
	3630	else
	3631	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
	3632	fi
[388]	3633
	3634	# next is test for openmp usage
[622]	3635	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
	3636	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
[221]	3637	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3638	then
[374]	3639	export MV2_NUM_PORTS=2
[376]	3640	# The default setting of MV2_CPU_MAPPING gives best results
[405]	3641	# export MV2_ENABLE_AFFINITY=1
[376]	3642	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
[412]	3643	# if [[ "$sgi_feature" = ice2 ]]
	3644	# then
	3645	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
	3646	# else
	3647	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
	3648	# fi
[678]	3649	if [[ $use_openmp = true ]]
	3650	then
	3651	unset MV2_CPU_MAPPING
	3652	export MV2_ENABLE_AFFINITY=0
	3653	fi
[412]	3654	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
[678]	3655	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
[622]	3656	if [[ $use_openmp = true ]]
[405]	3657	then
[678]	3658	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
[693]	3659	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
[405]	3660	else
[693]	3661	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
[405]	3662	fi
[738]	3663	elif [[ "$mpilib" = impi ]]
	3664	then
[1058]	3665	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
	3666	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
[221]	3667	fi
[892]	3668	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
[179]	3669	then
[544]	3670	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[755]	3671	elif [[ $host = lcflow ]]
	3672	then
	3673	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
[1021]	3674	elif [[ $host = lcsb ]]
	3675	then
	3676	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
[1040]	3677	elif [[ $host = lckiaps ]]
	3678	then
	3679	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
[1090]	3680	elif [[ $host = lckyu* ]]
	3681	then
[1106]	3682	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
[164]	3683	else
[1106]	3684	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3685	fi
[1]	3686	else
[164]	3687
[206]	3688	# currently there is no full MPI-2 support on ICE and XT4
	3689	(( iia = $numprocs_atmos / $threads_per_task ))
	3690	(( iio = $numprocs_ocean / $threads_per_task ))
	3691	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3692	printf "\n using $coupled_mode coupling"
[102]	3693	printf "\n\n"
[164]	3694
[206]	3695	if [[ $coupled_mode = "mpi2" ]]
[164]	3696	then
[206]	3697	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3698	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3699	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3700	then
[197]	3701
[221]	3702	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3703	then
	3704	# export MPI_LAUNCH_TIMEOUT=360
	3705	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3706	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3707	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3708	then
	3709	# ulimit -s 300000 # A too large stack size causes problems
	3710	# export MV2_NUM_PORTS=2
	3711	# export MV2_CPU_MAPPING=0:1:2:3
	3712	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3713	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3714	fi
[197]	3715
[892]	3716	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
[206]	3717	then
[197]	3718
[206]	3719	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3720	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3721
	3722	else
	3723	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3724	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3725	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3726	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3727	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3728	fi
	3729	wait
	3730
[164]	3731	else
	3732
[206]	3733	echo "coupled_run $iia $iio" > runfile_atmos
	3734	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3735	then
	3736
[221]	3737	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3738	then
	3739	# export MPI_LAUNCH_TIMEOUT=360
	3740	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3741	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3742	then
	3743	# ulimit -s 300000 # A too large stack size causes problems
	3744	# export MV2_NUM_PORTS=2
	3745	# export MV2_CPU_MAPPING=0:1:2:3
	3746	mpiexec ./a.out $ROPTS < runfile_atmos
	3747	fi
[206]	3748
[892]	3749	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
[206]	3750	then
	3751
	3752	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3753
[718]	3754	elif [[ $host = lck \|\| $host = lckordi ]]
[367]	3755	then
[1108]	3756
	3757	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
	3758
	3759	elif [[ $host = lckyu* ]]
	3760	then
	3761
	3762	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
	3763
[206]	3764	fi
	3765	wait
[164]	3766	fi
[102]	3767
[206]	3768	fi
[440]	3769	elif [[ $host = lckyoto ]]
	3770	then
	3771	set -xv
	3772	export P4_RSHCOMMAND=plesh
	3773	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
	3774	if [[ "$ENVIRONMENT" = BATCH ]]
	3775	then
[505]	3776	if [[ "$cond2" = fujitsu ]]
	3777	then
	3778	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
	3779	elif [[ "cond2" = pgi ]]
	3780	then
	3781	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
	3782	else
	3783	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
	3784	fi
[440]	3785	else
[505]	3786	if [[ "$cond2" = "" ]]
	3787	then
	3788	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
	3789	else
	3790	mpirun -np $numprocs ./a.out $ROPTS
	3791	fi
[440]	3792	fi
	3793	set +xv
[1]	3794	elif [[ $host = lctit ]]
	3795	then
[678]	3796	export OMP_NUM_THREADS=$threads_per_task
	3797	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3798	if [[ "$threads_per_task" != 1 ]]
	3799	then
	3800	export MV2_ENABLE_AFFINITY=0
	3801	fi
	3802	echo "----- PBS_NODEFILE content:"
	3803	cat $PBS_NODEFILE
	3804	echo "-----"
	3805	(( ii = $numprocs / $threads_per_task ))
	3806	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
	3807	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
[1]	3808	else
[102]	3809	mpprun -n $numprocs a.out $ROPTS
[1]	3810	fi
	3811	[[ $? != 0 ]] && execution_error=true
	3812
	3813
	3814	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3815	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3816	then
	3817	apprentice
	3818	fi
	3819	else
[102]	3820	a.out $ROPTS
[1]	3821	fi
	3822	fi
	3823	if [[ $? != 0 \|\| $execution_error = true ]]
	3824	then
	3825
	3826	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3827	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3828	printf "\n +++ runtime error occured"
	3829	locat=execution
	3830	exit
	3831	else
[102]	3832	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3833	printf "\n$striche\n *** execution finished \n"
[260]	3834
[261]	3835	# Stop the dvr streaming server and process the dvr output in order
	3836	# to create dvrs- and html-files containing all streams
[260]	3837	if [[ "$dvrserver_id" != "" ]]
	3838	then
	3839	kill $dvrserver_id
	3840	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3841
[262]	3842	# If there is a directory, data have been output by the
	3843	# streaming server. Otherwise, user has chosen dvrp_output=local
	3844	if [[ -d DATA_DVR ]]
	3845	then
[261]	3846
[262]	3847	# Add the current dvr configuration file to the dvr output
	3848	# directory
	3849	cp .dvrserver.config DATA_DVR
	3850
	3851	# Process the dvr output (option -s for also generating
	3852	# sequence mode data)
	3853	process_dvr_output -d DATA_DVR -f $fname -s
	3854
	3855	else
	3856
	3857	# Process the local output
	3858	process_dvr_output -l -d DATA_DVR -f $fname
	3859
	3860	fi
	3861
	3862	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3863	then
	3864
	3865	# Process dvr output generated in local mode (dvrp_output=local)
	3866	process_dvr_output -l -d DATA_DVR -f $fname
	3867
[260]	3868	fi
[1]	3869	fi
	3870
	3871
	3872
[503]	3873	# Call of combine_plot_fields in order to merge single files written
	3874	# by each PE into one file.
[920]	3875	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
	3876	then
	3877	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
	3878	printf "\n 2d- and/or 3d-data may be incomplete!"
	3879	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
	3880	elif [[ "$combine_plot_fields" == true ]]
	3881	then
	3882	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
	3883	combine_plot_fields${block}.x
	3884	else
	3885	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
	3886	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
	3887	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
	3888	fi
[503]	3889
	3890
	3891
[1]	3892	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3893	(( i = 0 ))
	3894	while (( i < ioc ))
	3895	do
	3896	(( i = i + 1 ))
	3897	if (( i == 1 ))
	3898	then
	3899	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3900	fi
	3901	printf "\n >>> ${out_command[$i]}"
	3902	eval ${out_command[$i]}
	3903	if (( i == ioc ))
	3904	then
	3905	printf "\n$striche\n"
	3906	fi
	3907	done
	3908
	3909
	3910	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3911	if [[ $do_trace = true ]]
	3912	then
	3913	printf "\n\n"
	3914	ls -al
	3915	fi
	3916
	3917
	3918
	3919	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3920	(( i = 0 ))
	3921	while (( i < iout ))
	3922	do
	3923	(( i = i + 1 ))
	3924	if (( i == 1 ))
	3925	then
	3926	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3927	fi
	3928
	3929	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3930	files_for_pes=false; filetyp=file
	3931	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3932	then
	3933	files_for_pes=true; filetyp=directory
	3934	actionout[$i]=""
	3935	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3936	then
	3937	actionout[$i]=""
	3938	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3939	then
	3940	files_for_pes=true; filetyp=directory
	3941	actionout[$i]="ar"
	3942	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3943	then
	3944	actionout[$i]="ar"
	3945	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3946	then
	3947	files_for_pes=true; filetyp=directory
	3948	actionout[$i]="fl"
	3949	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3950	then
	3951	actionout[$i]="fl"
	3952	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3953	then
	3954	files_for_pes=true; filetyp=directory
	3955	actionout[$i]="tr"
	3956	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3957	then
	3958	actionout[$i]="tr"
	3959	fi
	3960
	3961	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3962	then
	3963	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3964	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3965	then
	3966	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3967	else
	3968
	3969
	3970	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3971	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3972	# REMOTE-RECHNUNGEN
	3973	if [[ "${actionout[$i]}" = tr ]]
	3974	then
	3975	if [[ $localhost != $fromhost ]]
	3976	then
	3977	if [[ $files_for_pes = false ]]
	3978	then
	3979	cps=""
	3980	cst=""
	3981	else
	3982	cps=-c
	3983	cst="/"
	3984	fi
[622]	3985	if [[ $localhost = nech ]]
[1]	3986	then
	3987
	3988	# TRANSFER IN EIGENSTAENDIGEM JOB
	3989	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3990	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3991	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3992	if [[ $files_for_pes = false ]]
	3993	then
	3994	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3995	else
	3996	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3997	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3998	fi
	3999
	4000	echo "set -x" > transfer_${localout[$i]}
	4001	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	4002
	4003	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	4004	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	4005	printf "\n or higher cycle\n"
[1094]	4006	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
[82]	4007
[1]	4008	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	4009
	4010	if [[ $localhost = nech ]]
	4011	then
[1094]	4012	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
[1]	4013	else
	4014	if [[ "$LOGNAME" = b323013 ]]
	4015	then
[1094]	4016	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	4017	else
[1094]	4018	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	4019	fi
	4020	fi
	4021
	4022	else
	4023
	4024	# TRANSFER INNERHALB DIESES JOBS
	4025	transfer_failed=false
[82]	4026	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	4027	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
[1094]	4028	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
[82]	4029	[[ $? != 0 ]] && transfer_failed=true
[1]	4030
	4031	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	4032	# LOKALER MASCHINE ANLEGEN
	4033	if [[ $transfer_failed = true ]]
	4034	then
	4035	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	4036	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	4037
	4038	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	4039	# ANLEGEN.
	4040	eval local_catalog=${pathout[$i]}
	4041	if [[ ! -d $local_catalog ]]
	4042	then
	4043	printf " *** local directory does not exist. Trying to create:\n"
	4044	printf " $local_catalog \n"
	4045	mkdir -p $local_catalog
	4046	fi
	4047	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	4048	transfer_problems=true
	4049	fi
	4050	fi
	4051	else
	4052
	4053	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	4054	actionout[$i]=""
	4055	fi
	4056	fi
	4057
	4058
	4059	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	4060	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	4061	# REMOTE-RECHNUNGEN
	4062	if [[ "${actionout[$i]}" = tra ]]
	4063	then
	4064	if [[ $localhost != $fromhost ]]
	4065	then
[622]	4066	if [[ $localhost = ibmh \|\| $localhost = nech ]]
[1]	4067	then
	4068
	4069	# TRANSFER IN EIGENSTAENDIGEM JOB
	4070	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	4071	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	4072	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	4073	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	4074
	4075	echo "set -x" > transfer_${localout[$i]}
	4076	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	4077
	4078	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	4079	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	4080	printf "\n or higher cycle\n"
[1094]	4081	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
[82]	4082
[1]	4083	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	4084
	4085	if [[ $localhost = nech ]]
	4086	then
[1094]	4087	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
[1]	4088	else
	4089	if [[ $LOGNAME = b323013 ]]
	4090	then
[1094]	4091	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	4092	else
[1094]	4093	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	4094	fi
	4095	fi
	4096
	4097	else
	4098
	4099	# TRANSFER INNERHALB DIESES JOBS
	4100	transfer_failed=false
[82]	4101	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	4102	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
[1094]	4103	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
[82]	4104	[[ $? != 0 ]] && transfer_failed=true
[1]	4105
	4106	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	4107	# LOKALER MASCHINE ANLEGEN
	4108	if [[ $transfer_failed = true ]]
	4109	then
	4110	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	4111	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	4112
	4113	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	4114	# ANLEGEN
	4115	eval local_catalog=${pathout[$i]}
	4116	if [[ ! -d $local_catalog ]]
	4117	then
	4118	printf " *** local directory does not exist. Trying to create:\n"
	4119	printf " $local_catalog \n"
	4120	mkdir -p $local_catalog
	4121	fi
	4122
	4123	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	4124	transfer_problems=true
	4125	fi
	4126	fi
	4127	else
	4128
	4129	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	4130	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	4131	actionout[$i]=a
	4132	fi
	4133	fi
	4134
	4135
	4136	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	4137	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	4138	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	4139	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	4140	if [[ "${actionout[$i]}" = fl ]]
	4141	then
	4142	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4143	chmod g+rx $tmp_data_catalog
	4144	if [[ $files_for_pes = false ]]
	4145	then
	4146	printf "\n >>> OUTPUT: ${localout[$i]} to"
	4147	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	4148	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	4149	else
	4150	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	4151	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	4152	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	4153	cd ${localout[$i]}
	4154	for file in $(ls *)
	4155	do
	4156	ln -f $file $tmp_data_catalog/${frelout[$i]}
	4157	done
	4158	cd $TEMPDIR
[1]	4159	fi
	4160
	4161
	4162	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	4163	if [[ $store_on_archive_system = true ]]
	4164	then
	4165
	4166	if [[ $archive_system = asterix ]]
	4167	then
	4168	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4169	if [[ $files_for_pes = false ]]
	4170	then
	4171	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4172	else
	4173	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4174	fi
	4175	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4176	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	4177	echo "then" >> archive_${frelout[$i]}
	4178	echo " do_stageout=false" >> archive_${frelout[$i]}
	4179	echo "else" >> archive_${frelout[$i]}
	4180	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	4181	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	4182	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	4183	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	4184	if [[ $files_for_pes = false ]]
	4185	then
	4186	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	4187	else
	4188	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	4189	fi
	4190	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	4191	echo "fi" >> archive_${frelout[$i]}
	4192	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4193	elif [[ $archive_system = DMF ]]
	4194	then
	4195	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4196	if [[ $files_for_pes = false ]]
	4197	then
	4198	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	4199	locat=DMF
	4200	exit
	4201	else
	4202	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	4203	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	4204	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	4205	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	4206	fi
	4207	elif [[ $archive_system = tivoli ]]
	4208	then
	4209	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4210	if [[ $files_for_pes = false ]]
	4211	then
	4212	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4213	echo "set -x" >> archive_${frelout[$i]}
	4214	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4215	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4216	else
	4217
	4218	echo "set -x" >> archive_${frelout[$i]}
	4219	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	4220	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4221	cd $tmp_data_catalog
	4222	all_files=`ls -1 ${frelout[$i]}/*`
	4223	cd - > /dev/null
	4224	(( inode = 0 ))
	4225	(( tp1 = tasks_per_node + 1 ))
	4226	while (( inode < nodes ))
	4227	do
	4228	# echo "*** all_files = \"$all_files\" "
	4229	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	4230	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	4231	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	4232	# echo "*** files = \"$files\" "
	4233	# echo "*** all_files = \"$all_files\" "
[416]	4234	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4235	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4236	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
	4237	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[397]	4238	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	4239	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[1]	4240	(( inode = inode + 1 ))
	4241	done
	4242	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4243	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4244	fi
	4245	elif [[ $archive_system = ut ]]
	4246	then
	4247	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4248	if [[ $files_for_pes = false ]]
	4249	then
	4250	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4251	echo "set -x" >> archive_${frelout[$i]}
	4252	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4253	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4254	else
	4255
	4256	echo "set -x" >> archive_${frelout[$i]}
	4257	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	4258	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4259	cd $tmp_data_catalog
	4260	all_files=`ls -1 ${frelout[$i]}/*`
	4261	cd - > /dev/null
	4262	(( inode = 0 ))
	4263	(( tp1 = tasks_per_node + 1 ))
	4264	while (( inode < nodes ))
	4265	do
	4266	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	4267	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	4268	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4269	(( inode = inode + 1 ))
	4270	done
	4271	fi
	4272	elif [[ $archive_system = none ]]
	4273	then
	4274	printf " +++ archiving on $localhost not available!\n"
	4275	fi
	4276
	4277	if [[ $archive_system != none ]]
	4278	then
[399]	4279	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
[1]	4280	then
[1094]	4281	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
	4282	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
[1]	4283	elif [[ $localhost = nech ]]
	4284	then
[1094]	4285	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
[1]	4286	fi
	4287	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4288	fi
	4289	else
[399]	4290	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
[1]	4291	fi
	4292
	4293
	4294	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	4295	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	4296	if [[ $files_for_pes = false ]]
	4297	then
	4298	cat /dev/null > ${pathout[$i]}
	4299	else
	4300	mkdir -p ${pathout[$i]}
	4301	fi
	4302
	4303	fi
	4304
	4305
	4306	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	4307	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	4308	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	4309	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	4310	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	4311	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	4312	if [[ "${actionout[$i]}" = ar ]]
	4313	then
	4314	if [[ $files_for_pes = false ]]
	4315	then
	4316	printf "\n >>> OUTPUT: ${localout[$i]} to"
	4317	printf "\n ${pathout[$i]}"
	4318	printf "\n File will be copied to archive-system ($archive_system) !\n"
	4319	else
	4320	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	4321	printf "\n ${pathout[$i]}"
	4322	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	4323	fi
	4324	mv ${localout[$i]} ${frelout[$i]}
	4325
	4326	file_saved=false
	4327
	4328	if [[ $archive_system = asterix ]]
	4329	then
	4330	do_stageout=true
	4331	(( stageout_anz = 0 ))
	4332	while [[ $do_stageout = true ]]
	4333	do
	4334	if [[ $files_for_pes = false ]]
	4335	then
	4336	stageout ${frelout[$i]} > STAGE_OUTPUT
	4337	else
	4338	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	4339	fi
	4340	cat STAGE_OUTPUT
	4341	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	4342	then
	4343	file_saved=true
	4344	do_stageout=false
	4345	else
	4346	if [[ $files_for_pes = false ]]
	4347	then
	4348	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	4349	else
	4350	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	4351	fi
	4352	(( stageout_anz = stageout_anz + 1 ))
	4353	if (( stageout_anz == 10 ))
	4354	then
	4355	printf "\n +++ stoped after 10 unsuccessful tries!"
	4356	archive_save=false
	4357	do_stageout=false
	4358	else
	4359	printf "\n *** new try to store on archive after 15 min:"
	4360	sleep 900
	4361	fi
	4362	fi
	4363	done
	4364	elif [[ $archive_system = DMF ]]
	4365	then
	4366	if [[ $files_for_pes = false ]]
	4367	then
	4368	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	4369	locat=DMF
	4370	exit
	4371	else
	4372	rm -rf $ARCHIVE/${frelout[$i]}
	4373	cp -r ${frelout[$i]} $ARCHIVE
	4374	fi
	4375	file_saved=true
	4376	elif [[ $archive_system = tivoli ]]
	4377	then
	4378	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4379	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4380	# GELEGT WERDEN
	4381	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4382	chmod g+rx $tmp_data_catalog
	4383	if [[ $files_for_pes = false ]]
	4384	then
	4385	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4386	else
	4387	mkdir $tmp_data_catalog/${frelout[$i]}
	4388	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4389	fi
	4390
	4391	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4392	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4393	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4394	if [[ $files_for_pes = false ]]
	4395	then
	4396	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4397	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4398	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4399	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4400	else
	4401	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4402	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4403	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4404	fi
	4405
[1094]	4406	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
[1]	4407	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4408	file_saved=true
	4409
	4410	elif [[ $archive_system = ut ]]
	4411	then
	4412	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4413	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4414	# GELEGT WERDEN
	4415	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4416	chmod g+rx $tmp_data_catalog
	4417	if [[ $files_for_pes = false ]]
	4418	then
	4419	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4420	else
	4421	mkdir $tmp_data_catalog/${frelout[$i]}
	4422	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4423	fi
	4424
	4425	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4426	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4427	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4428	if [[ $files_for_pes = false ]]
	4429	then
	4430	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4431	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4432	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4433	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4434	else
	4435	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4436	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4437	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4438	fi
	4439
[1094]	4440	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
[1]	4441	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4442	file_saved=true
	4443
	4444	else
	4445	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	4446	archive_save=false
	4447	fi
	4448	if [[ $file_saved = true ]]
	4449	then
	4450	if [[ $files_for_pes = false ]]
	4451	then
	4452	cat /dev/null > ${pathout[$i]}
	4453	else
	4454	mkdir -p ${pathout[$i]}
	4455	fi
	4456	fi
	4457	fi
	4458
	4459	# APPEND AUF LOKALER MASCHINE
	4460	if [[ "${actionout[$i]}" = "a" ]]
	4461	then
[741]	4462	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
	4463	then
	4464	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
	4465	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
	4466	else
	4467	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	4468	cat ${localout[$i]} >> ${pathout[$i]}
	4469	fi
[1]	4470	fi
	4471
	4472	# KOPIEREN AUF LOKALER MASCHINE
	4473	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	4474	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	4475	then
	4476
	4477	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	4478	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	4479	then
	4480	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	4481	if [[ $link_local_output = true ]]
	4482	then
	4483	printf " using ln -f\n"
	4484	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4485	fi
	4486	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4487	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	4488	then
	4489	if [[ $link_local_output = true ]]
	4490	then
	4491	printf " ln failed, using cp...\n"
	4492	fi
	4493	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4494	fi
[1]	4495	else
	4496	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	4497	if [[ $link_local_output = true ]]
	4498	then
	4499	printf " using ln -f\n"
	4500	ln -f ${localout[$i]} ${pathout[$i]}
	4501	fi
	4502	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4503	if [[ ! -f "${pathout[$i]}" ]]
	4504	then
	4505	if [[ $link_local_output = true ]]
	4506	then
	4507	printf " ln failed, using cp...\n"
	4508	fi
	4509	cp ${localout[$i]} ${pathout[$i]}
	4510	fi
[1]	4511	fi
	4512
	4513	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	4514	then
	4515
	4516	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	4517	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	4518	# WIRD DANN KOPIERT
	4519	# PER MOVE UMBENANNT WERDEN
	4520	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	4521	if [[ $link_local_output = true ]]
	4522	then
	4523	printf " using ln -f\n"
	4524	mkdir ${pathout[$i]}
	4525	cd ${localout[$i]}
	4526	for file in $(ls *)
	4527	do
	4528	ln -f $file ${pathout[$i]}
	4529	done
	4530	cd $TEMPDIR
	4531	fi
	4532	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	4533	if [[ ! -f "${pathout[$i]}/_0000" ]]
	4534	then
	4535	if [[ $link_local_output = true ]]
	4536	then
	4537	printf " ln failed for .../_0000, using cp...\n"
	4538	fi
	4539	cp -r ${localout[$i]} ${pathout[$i]}
	4540	fi
[1]	4541
	4542	fi
	4543	fi
	4544	done
	4545	if (( i != 0 ))
	4546	then
	4547	if [[ $transfer_problems = true ]]
	4548	then
	4549	printf "\n$striche\n *** OUTPUT-files saved"
	4550	printf "\n +++ WARNING: some data transfers failed! \n"
	4551	else
	4552	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4553	fi
	4554	fi
	4555
	4556
	4557	# EVENTUELL FOLGEJOB STARTEN
	4558	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4559	if [[ -f CONTINUE_RUN ]]
	4560	then
	4561
	4562	if [[ $archive_save = true ]]
	4563	then
	4564
	4565	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4566	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4567	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4568	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4569	# HANDEN
	4570	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4571	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4572	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4573	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4574	then
	4575	mc=`echo $mc \| sed 's/#/f/g'`
	4576	fi
	4577
	4578
	4579	# JOB STARTEN
	4580	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4581	echo " $mc"
	4582	printf "\n$striche\n"
	4583	if [[ $localhost != $fromhost ]]
	4584	then
	4585
[1099]	4586	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
[1]	4587	then
	4588	echo "*** ssh will be used to initiate restart-runs!"
	4589	echo " return_addres=\"$return_addres\" "
	4590	echo " return_username=\"$return_username\" "
[635]	4591	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
[1]	4592	then
[1094]	4593	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4594	else
[693]	4595	if [[ $localhost = ibmkisti ]]
	4596	then
[1094]	4597	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
[693]	4598	else
[1094]	4599	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[693]	4600	fi
[1]	4601	fi
	4602	else
	4603	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4604	locat=restart; exit
	4605	fi
	4606
	4607	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4608	# DER AKTUELLE JOB ENDET
[399]	4609	if [[ $queue = special1q ]]
	4610	then
	4611	sleep 120
	4612	else
	4613	sleep 30
	4614	fi
[1]	4615
	4616	else
	4617
	4618	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4619	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4620	cd $LOCAL_PWD
[108]	4621	if [[ $localhost = lcfimm ]]
	4622	then
[1094]	4623	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1103]	4624	elif [[ $localhost = lckyuh ]]
	4625	then
	4626	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
	4627	printf "\n please restart job manually using command:\n"
	4628	printf "\n \"$mc\" "
[108]	4629	else
	4630	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4631	fi
[1]	4632	cd - > /dev/null
	4633	fi
[1103]	4634	if [[ $localhost = lckyuh ]]
	4635	then
	4636	printf "\n$striche\n *** restart-run to be initiated manually\n"
	4637	else
	4638	printf "\n$striche\n *** restart-run initiated \n"
	4639	fi
[1]	4640
	4641
	4642	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4643	# GEHOLT WORDEN SIND, LOESCHEN
	4644	(( i = 0 ))
	4645	while (( i < iin ))
	4646	do
	4647	(( i = i + 1 ))
	4648	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4649	then
	4650	rm -r $tmp_data_catalog/${frelin[$i]}
	4651	fi
	4652	done
	4653
	4654	else
	4655
	4656	printf "\n +++ no restart-run possible, since errors occured"
	4657	printf "\n during the archive process"
	4658	fi
	4659
	4660	fi
	4661
	4662
	4663
	4664	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4665	if [[ "$email_notification" != "none" ]]
[1]	4666	then
	4667
	4668	if [[ $localhost != $fromhost ]]
	4669	then
	4670	if [[ -f CONTINUE_RUN ]]
	4671	then
	4672	echo "PALM restart run necessary" > email_text
	4673	echo "description header of actual run:" >> email_text
	4674	cat CONTINUE_RUN >> email_text
	4675	echo "mrun-command to restart:" >> email_text
	4676	echo "$mc" >> email_text
	4677	else
	4678	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4679	fi
	4680	mail $email_notification < email_text
	4681	printf "\n *** email notification sent to \"$email_notification\" "
	4682	fi
	4683	fi
	4684
	4685
	4686
	4687	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4688	cd $HOME
	4689	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4690
	4691	else
	4692
	4693
	4694	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4695	# CHENDE AKTIONEN DURCHGEFUEHRT
	4696
	4697	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[821]	4698	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	4699	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4700	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4701	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4702	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4703	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4704	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4705	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4706	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4707	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4708	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4709	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4710	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4711	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4712	if [[ $use_openmp = true ]]
	4713	then
[622]	4714	mrun_com=${mrun_com}" -O $threads_per_task"
[1]	4715	fi
[759]	4716	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
[397]	4717	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
[1]	4718	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4719	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4720	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4721	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4722	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4723	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[920]	4724	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
	4725	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
[759]	4726	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
[1]	4727	if [[ $do_remote = true ]]
	4728	then
	4729	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4730	fi
	4731
	4732
	4733	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4734	jobfile=jobfile.$RANDOM
	4735
	4736
	4737	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4738	echo "mkdir $TEMPDIR" >> $jobfile
	4739	echo "cd $TEMPDIR" >> $jobfile
	4740
	4741
	4742	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4743	if [[ $do_trace = true ]]
	4744	then
	4745	echo "set -x" >> $jobfile
	4746	else
	4747	echo "set +vx" >> $jobfile
	4748	fi
	4749
	4750
[1043]	4751	# initialize the environment and load modules
	4752	if [[ "$init_cmds" != "" ]]
	4753	then
	4754	echo "$init_cmds" >> $jobfile
	4755	fi
	4756	if [[ "$module_calls" != "" ]]
	4757	then
	4758	echo "$module_calls" >> $jobfile
	4759	fi
	4760
	4761
[191]	4762	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4763	# DATEI FUER DEN JOB
[693]	4764	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
[1]	4765	then
	4766
[191]	4767	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4768	# KOPIEREN
	4769	if [[ $restart_run != true ]]
	4770	then
	4771	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4772	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4773	fi
[1]	4774
[191]	4775	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[693]	4776	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
[193]	4777	echo "set -x" >> $jobfile
[693]	4778	if [[ $host = $localhost ]]
	4779	then
	4780	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4781	else
	4782	if [[ $host != ibmkisti ]]
	4783	then
[1094]	4784	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
[693]	4785	else
	4786	# on KISTI's IBM firewall is only opened on interactive node
	4787	echo "localdir=\`pwd\`" >> $jobfile
[1094]	4788	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
[693]	4789	fi
	4790	fi
[193]	4791	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4792
[193]	4793	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4794	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4795	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4796	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4797	echo "execute_mrun=true" >> $jobfile
	4798	echo " " >> $jobfile
	4799
[191]	4800	else
	4801
	4802	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4803	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4804	if [[ $do_compile = true ]]
	4805	then
	4806
	4807	source_catalog=SOURCES_FOR_RUN_$fname
	4808
	4809	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4810	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4811	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4812	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4813	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4814	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4815
	4816	for filename in $source_list
	4817	do
	4818	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4819	echo "cat > $filename << \"%END%\"" >> $jobfile
	4820	cat $source_catalog/$filename >> $jobfile
	4821	echo " " >> $jobfile
	4822	echo "%END%" >> $jobfile
	4823	echo " " >> $jobfile
	4824	done
	4825
[1]	4826	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4827	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4828	cat $source_catalog/Makefile >> $jobfile
[1]	4829	echo " " >> $jobfile
	4830	echo "%END%" >> $jobfile
	4831	echo " " >> $jobfile
	4832
[191]	4833	echo "cd - > /dev/null" >> $jobfile
[1]	4834
[191]	4835	fi
[1]	4836
	4837
[191]	4838	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4839	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[1099]	4840	# Lines with #$ coming from the svn keyword substitution are
	4841	# removed from the config file in order to avoid problems
	4842	# with the SGE batch system
[191]	4843	echo "cat > $config_file << \"%END%\"" >> $jobfile
[1101]	4844	if [[ $host = lckyuh ]]
	4845	then
	4846	# no cross compiler on compute node
	4847	sed 's/frtpx/frt/g' $config_file >> $jobfile
	4848	else
	4849	sed 's/#$.*//g' $config_file >> $jobfile
	4850	fi
[191]	4851	echo "%END%" >> $jobfile
	4852	echo " " >> $jobfile
[1]	4853
	4854
[191]	4855	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4856	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[1101]	4857	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
[1103]	4858	if [[ $host = lckyuh ]]
	4859	then
	4860	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
	4861	else
	4862	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4863	fi
[1101]	4864	echo "%END%" >> $jobfile
[191]	4865	echo "chmod u+x $mrun_script_name" >> $jobfile
	4866	echo "execute_mrun=true" >> $jobfile
	4867	echo " " >> $jobfile
[1]	4868
	4869	fi
	4870
[191]	4871
[1]	4872	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4873	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4874	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4875	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4876	if [[ $do_remote = true ]]
	4877	then
	4878	(( i = 0 ))
	4879	while (( i < iin ))
	4880	do
	4881	(( i = i + 1 ))
	4882	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4883	if [[ "${transin[$i]}" = job ]]
	4884	then
	4885	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4886	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4887	echo " " >> $jobfile
	4888	echo "%END%" >> $jobfile
	4889	else
[1094]	4890	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4891	fi
	4892
	4893	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4894	echo "if [[ \$? = 1 ]]" >> $jobfile
	4895	echo "then" >> $jobfile
	4896	echo " echo \" \" " >> $jobfile
	4897	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4898	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4899	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4900	echo " execute_mrun=false" >> $jobfile
	4901	echo "fi" >> $jobfile
	4902	done
	4903	fi
	4904
	4905	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4906	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4907	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4908	echo "export LOCAL_PWD" >> $jobfile
	4909
	4910	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4911	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4912	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4913
[66]	4914	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4915	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4916	then
	4917	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
[1099]	4918	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
	4919	then
	4920	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
	4921	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
[66]	4922	fi
[1]	4923
[693]	4924	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
[1101]	4925	echo "set -x" >> $jobfile
	4926	echo "queue=$queue" >> $jobfile
[1]	4927	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
[1101]	4928	echo 'ls -al; echo `pwd`' >> $jobfile
	4929	echo "cd \$HOME" >> $jobfile
	4930	echo "rm -rf $TEMPDIR" >> $jobfile
[1]	4931
	4932
	4933
	4934
	4935	# JOB PER SUBJOB STARTEN
	4936	if [[ $silent = false ]]
	4937	then
	4938	printf "\n "
	4939	else
	4940	printf "\n\n"
	4941	fi
	4942
[1094]	4943	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
[1]	4944	rm -rf $jobfile
	4945
	4946
	4947	fi # ENDE REMOTE-TEIL
	4948
	4949
	4950
	4951	# ENDE DER PROZEDUR

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