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source: palm/trunk/SCRIPTS/mrun @ 1124

Last change on this file since 1124 was 1124, checked in by raasch, 12 years ago
bugfix: variable memory is exported via typeset option -x, because otherwise an unknown side effect may lead to data loss when getopts is reading the script-option arguments
Property svn:keywords set to `Id Rev`
File size: 180.8 KB

Line
1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	# variable "memory" is exported via typeset option -x, because otherwise an unknown
25	# side effect may lead to data loss when getopts is reading the script-option arguments
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: mrun 1124 2013-04-09 15:46:52Z raasch $
30	#
31	# 1122 2013-04-09 08:37:16Z heinze
32	# Bugfix: change type of variable last_char
33	#
34	# 1119 2013-04-05 15:11:19Z raasch
35	# Bugfix for setting -T option for subjob
36	#
37	# 1108 2013-03-05 07:03:32Z raasch
38	# bugfix for coupled runs on lckyut/lckyuh
39	#
40	# 1106 2013-03-04 05:31:38Z raasch
41	# --stdin argument for mpiexec on lckyuh
42	# -y and -Y settings output to header
43	#
44	# 1103 2013-02-20 02:15:53Z raasch
45	# default script runs again under ksh, because of unsolved problems with read
46	# from stdin: when bash script is called from a ksh, message "read error: 0:
47	# Resource temporarily unavailable" appears and script does not stop,
48	# further bash compatibility adjustments,
49	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
50	# on lckyuh, but mrun does not terminate and issues a warning instead
51	#
52	# 1101 2013-02-17 10:20:21Z raasch
53	# script now running under bash instead of ksh, which required small adjustments
54	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
55	# read from stdin),
56	# cross compilername on lckyuh compute nodes replaced by real compiler name
57	#
58	# 1099 2013-02-10 01:47:43Z raasch
59	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
60	# and for Forwind cluster (lcflow)
61	# small further adjustments for lckyut
62	#
63	# 1094 2013-02-03 01:52:12Z raasch
64	# explicit ssh/scp port can be set in config file with environment variable
65	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
66	# decalpha parts (yonsei) removed
67	#
68	# 2013-02-02 07:06:13Z raasch
69	# adjustments for Kyushu-University computing center (lckyut - tatara)
70	#
71	# 1083 2013-01-04 10:22:09Z maronga
72	# bugfix in parameter file check (read %cpp_options was missing)
73	#
74	# 1069 2012-11-28 16:18:43Z maronga
75	# bugfix: coupling mode was always set to mpi2, typos removed
76	#
77	# 1058 2012-11-21 07:00:35Z raasch
78	# Intel inspector (inspxe) is given the number of PEs instead of the number of
79	# nodes
80	#
81	# 1046 2012-11-09 14:38:45Z maronga
82	# code put under GPL (PALM 3.9)
83	#
84	# 21/03/94 - Siggi - first version finished
85	# 03/03/94 - Siggi - script development started
86	#
87	#--------------------------------------------------------------------------------#
88	# mrun - script for running PALM jobs
89	#--------------------------------------------------------------------------------#
90
91
92
93	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
94
95	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
96	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
97	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
98
99	AddFilenames=""
100	additional_conditions=""
101	add_source_path=""
102	afname=""
103	archive_save=true
104	archive_system=none
105	check_namelist_files=true
106	combine_plot_fields=true
107	compiler_name=""
108	cond1=""
109	cond2=""
110	config_file=.mrun.config
111	coupled_dist=""
112	coupled_mode="mpi1"
113	cpp_opts=""
114	cpp_options=""
115	cpumax=0
116	cpurest=0
117	delete_temporary_catalog=true
118	do_batch=false
119	do_compile=true
120	do_remote=false
121	do_stagein=true
122	do_stageout=true
123	do_trace=false
124	email_notification="none"
125	exclude=""
126	executable=""
127	execution_error=false
128	fimm=false
129	fname=test
130	fromhost=""
131	global_revision=""
132	group_number=none
133	host=""
134	host_file=""
135	hp=""
136	ignore_archive_error=false
137	input_list=""
138	interpreted_config_file=""
139	job_catalog="~/job_queue"
140	job_on_file=""
141	keep_data_from_previous_run=false
142	link_local_input=false
143	link_local_output=false
144	localhost_realname=$(hostname)
145	local_compile=false
146	local_dvrserver_running=.FALSE.
147	locat=normal
148	mainprog=""
149	makefile=""
150	max_par_io_str=""
151	mc=$0
152	while [[ $(echo $mc \| grep -c "/") != 0 ]]
153	do
154	mc=`echo $mc \| cut -f2- -d"/"`
155	done
156	module_calls=""
157	mrun_script_name=$mc
158	netcdf_inc=""
159	netcdf_lib=""
160	netcdf_support=false
161	node_usage=default
162	numprocs=""
163	numprocs_atmos=0
164	numprocs_ocean=0
165	OOPT=""
166	openmp=false
167	output_list=""
168	package_list=""
169	punkte="..........................................................."
170	queue=none
171	read_from_config=""
172	restart_run=false
173	if [[ `hostname` = rte10 ]]
174	then
175	return_addres=133.5.185.60
176	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
177	elif [[ `hostname` = climate0 ]]
178	then
179	return_addres=165.132.26.68
180	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
181	elif [[ `hostname` = urban00 ]]
182	then
183	return_addres=147.46.30.151
184	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
185	else
186	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
187	fi
188	return_password=""
189	return_username=$LOGNAME
190	remotecall=false
191	remote_username=""
192	run_coupled_model=false
193	run_mode=""
194	scirocco=false
195	store_on_archive_system=false
196	striche=" ----------------------------------------------------------------------------"
197	silent=false
198	source_list=""
199	source_path=SOURCE
200	tasks_per_node=""
201	threads_per_task=1
202	tmpcreate=false
203	tmp_data_catalog=""
204	transfer_problems=false
205	usern=$LOGNAME
206	use_openmp=false
207	version="MRUN 2.0 Rev$Rev: 1124 $"
208	working_directory=`pwd`
209	TOPT=""
210	XOPT=""
211	zeit=$( date \| cut -c 12-19 )
212
213	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
214	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
215	# effect may cause data loss when getopts is reading the
216	# script-option arguments
217	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes sekunden tp1
218
219
220
221
222	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
223	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
224
225	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
226	# EXPORTIERT WERDEN
227	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
228	export group_number input_list numprocs output_list queue run_mode
229
230
231
232	# FEHLERBEHANDLUNG
233	# BEI EXIT:
234	trap 'rm -rf $working_directory/tmp_mrun
235	if [[ $locat != localhost ]]
236	then
237	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
238	# then
239	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
240	#MRUN-calls on $localhost
241	#
242	#date and time user localhost remotehost termination mrun-command
243	#--------------------------------------------------------------------------------------------------------------------
244	#%STATEND%
245	# chmod 666 ${mrun_path}/statistik/mrun_statistik
246	# fi
247	#
248	# # EINTRAG IN DIE STATISTIK-DATEI
249	# string1=`date` #-L35
250	# string2=$usern #-L12
251	# string3=$localhost_realname #-L12
252	# string4=$host #-L12
253	# string5=$locat #-L12
254	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
255	# then
256	# if [[ $do_batch = true ]]
257	# then
258	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
259	# else
260	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
261	# fi
262	# fi
263	echo " " > /dev/null
264	fi
265
266	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
267	then
268
269	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
270	(( i = 0 ))
271	while (( i < iec ))
272	do
273	(( i = i + 1 ))
274	printf "\n *** Execution of ERROR-command:\n"
275	printf " >>> ${err_command[$i]}\n"
276	eval ${err_command[$i]}
277	done
278	if [[ -n $interpreted_config_file ]]
279	then
280	rm -rf $interpreted_config_file
281	fi
282	if [[ -n .mrun_environment ]]
283	then
284	rm -rf .mrun_environment
285	fi
286	if [[ $tmpcreate = true ]]
287	then
288	printf "\n *** Contents of \"$TEMPDIR\":\n"
289	ls -al; cd
290	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
291	fi
292	if [[ "$dvrserver_id" != "" ]]
293	then
294	echo "+++ killing dvrserver_id=$dvrserver_id"
295	kill $dvrserver_id
296	fi
297	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
298	then
299	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
300	fi
301	printf "\n\n+++ MRUN killed \n\n"
302	elif [[ $locat != control_c ]]
303	then
304	printf "\n\n --> all actions finished\n\n"
305	printf " Bye, bye $usern !!\n\n"
306	fi' exit
307
308
309	# BEI TERMINAL-BREAK:
310	trap 'rm -rf $working_directory/tmp_mrun
311	rm -rf $working_directory/tmp_check_namelist_files
312	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
313	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
314	then
315	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
316	fi
317	if [[ "$dvrserver_id" != "" ]]
318	then
319	echo "+++ killing dvrserver_id=$dvrserver_id"
320	kill $dvrserver_id
321	fi
322	printf "\n+++ MRUN killed by \"^C\" \n\n"
323	locat=control_c
324	exit
325	' 2
326
327
328	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
329	# BEEN SET
330	if [[ "$PALM_BIN" = "" ]]
331	then
332	printf "\n +++ environment variable PALM_BIN has not been set"
333	printf "\n please set it to the directory where the PALM scripts are located"
334	locat=palm_bin; exit
335	fi
336	export PATH=$PALM_BIN:$PATH
337
338
339
340	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
341	# FUER FOLGEJOBS BENOETIGT WIRD
342	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
343	do
344	case $option in
345	(a) afname=$OPTARG;;
346	(A) store_on_archive_system=true; mc="$mc -A";;
347	(b) do_batch=true; mc="$mc -b";;
348	(B) delete_temporary_catalog=false; mc="$mc -B";;
349	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
350	(C) restart_run=true; mc="$mc -C";;
351	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
352	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
353	(F) job_on_file="-D"; mc="$mc -F";;
354	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
355	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
356	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
357	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
358	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
359	(I) ignore_archive_error=true; mc="$mc -I";;
360	(k) keep_data_from_previous_run=true; mc="$mc -k";;
361	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
362	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
363	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
364	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
365	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
366	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
367	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
368	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
369	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
370	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
371	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
372	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
373	(S) read_from_config=false; mc="$mc -S";;
374	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
375	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
376	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
377	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
378	(v) silent=true; mc="$mc -v";;
379	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
380	(x) do_trace=true;set -x; mc="$mc -x";;
381	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
382	(y) ocean_file_appendix=true; mc="$mc -y";;
383	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
384	(z) check_namelist_files=false; mc="$mc -z";;
385	(Z) combine_plot_fields=false; mc="$mc -Z";;
386	(\?) printf "\n +++ unknown option $OPTARG \n"
387	printf "\n --> type \"$0 ?\" for available options \n"
388	locat=parameter;exit;;
389	esac
390	done
391
392
393	# EVTL. POSITIONSPARAMETER EINLESEN
394	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
395	(( to_shift = $OPTIND - 1 ))
396	shift $to_shift
397
398	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
399	if [[ "$1" = "?" ]]
400	then
401	(printf "\n *** mrun can be called as follows:\n"
402	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
403	printf "\n Description of available options:\n"
404	printf "\n Option Description Default-Value"
405	printf "\n -a base name of input files equiv. -d"
406	printf "\n -A archiving when using file-attribute fl"
407	printf "\n -b batch-job on local machine ---"
408	printf "\n -B do not delete temporary directory at end ---"
409	printf "\n -c configuration file .mrun.config"
410	printf "\n -d base name of files attached to program test"
411	printf "\n -D preprocessor(cpp)-directives \"\" "
412	printf "\n -F create remote job file only ---"
413	printf "\n -h execution host $localhost_realname"
414	printf "\n -i INPUT control list \"\" "
415	printf "\n -I archiving errors of previous batch-jobs"
416	printf "\n will be ignored"
417	printf "\n -k keep data from previous run"
418	printf "\n -K additional conditions for controling"
419	printf "\n usage of conditional code and"
420	printf "\n env-variables in configuration file \"\" "
421	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
422	printf "\n -M Makefile name Makefile"
423	printf "\n -n node usage (shared/not_shared) depending on -h"
424	printf "\n -o OUTPUT control list \"\" "
425	printf "\n -O use OpenMP ---"
426	printf "\n -p software package list \"\" "
427	printf "\n -q queue \"$queue\" "
428	printf "\n -r run control list (combines -i -o) \"\" "
429	printf "\n -s filenames of routines to be compiled \"\" "
430	printf "\n must end with .f, .f90, .F, or .c !"
431	printf "\n use \"..\" for more than one file and wildcards"
432	printf "\n -s LM compiles all locally modified files"
433	printf "\n -S config file interpreted by shellscript ---"
434	printf "\n -t allowed cpu-time in seconds (batch) 0"
435	printf "\n -T tasks per node depending on -h"
436	printf "\n -u username on remote machine \"\" "
437	printf "\n -v no prompt for confirmation ---"
438	printf "\n -w maximum parallel io streams as given by -X"
439	printf "\n -x tracing of mrun for debug purposes ---"
440	printf "\n -X # of processors (on parallel machines) 1"
441	printf "\n -y add appendix \"_O\" to all local output"
442	printf "\n files (ocean precursor runs followed by"
443	printf "\n coupled atmosphere-ocean runs) ---"
444	printf "\n -Y run coupled model, \"#1 #2\" with"
445	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
446	printf "\n -z disable a priori parameter file check ---"
447	printf "\n -Z skip combine_plot_fields at the end of "
448	printf "\n the simulation ---"
449	printf "\n "
450	printf "\n Possible values of positional parameter <modus>:"
451	printf "\n \"?\" - this outline \n\n") \| more
452	exit
453	elif [[ "$1" != "" ]]
454	then
455	printf "\n +++ positional parameter $1 unknown \n"
456	locat=parameter; exit
457	fi
458
459
460
461	# KURZE STARTMELDUNG
462	printf "\n*** $version "
463	printf "\n will be executed. Please wait ..."
464
465
466
467	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
468	if [[ ! -f $config_file ]]
469	then
470	printf "\n\n +++ configuration file: "
471	printf "\n $config_file"
472	printf "\n does not exist"
473	locat=connect; exit
474	fi
475
476
477	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
478	line=""
479	grep "%host_identifier" $config_file > tmp_mrun
480	while read line
481	do
482	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
483	then
484	HOSTNAME=`echo $line \| cut -d" " -s -f2`
485	host_identifier=`echo $line \| cut -d" " -s -f3`
486	if [[ $localhost_realname = $HOSTNAME ]]
487	then
488	localhost=$host_identifier
489	break
490	fi
491	fi
492	done < tmp_mrun
493
494	if [[ "$localhost" = "" ]]
495	then
496	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
497	printf "\n for local host \"$localhost_realname\"."
498	printf "\n Please add line"
499	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
500	printf "\n to the configuration file."
501	locat=localhost; exit
502	fi
503
504
505	# HOSTSPEZIFISCHE VARIABLEN SETZEN
506	case $localhost_realname in
507	(r1\|r2\|h01\|b01) archive_system=tivoli;;
508	(cs*) archive_system=ut;;
509	(fimm.bccs.uib.no) fimm=true;;
510	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
511	(scirocco) scirocco=true;;
512	esac
513
514
515
516	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
517	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
518	[[ "$afname" = "" ]] && afname=$fname
519
520
521	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
522	if [[ "$run_mode" != "" ]]
523	then
524	input_list="$input_list $run_mode"
525	output_list="$output_list $run_mode"
526	fi
527
528
529	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
530	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
531	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
532	# STARTET)
533	if [[ "$fromhost" = "" ]]
534	then
535	fromhost=$localhost
536	fi
537
538
539	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
540	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
541	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
542	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
543	if [[ -n $host && "$host" != $localhost ]]
544	then
545	do_batch=true
546	do_remote=true
547	case $host in
548	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
549	(*) printf "\n"
550	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
551	printf "\n is not available"
552	locat=nqs; (( iec = 0 )); exit;;
553	esac
554	else
555	host=$localhost
556	fi
557
558
559	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
560	if [[ -n $additional_conditions ]]
561	then
562	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
563	cond1=`echo $additional_conditions \| cut -d" " -f1`
564	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
565	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
566	if [[ -n $dummy ]]
567	then
568	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
569	locat=options; exit
570	fi
571	block=_$cond1
572	[[ -n $cond2 ]] && block=${block}_$cond2
573	fi
574
575
576	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
577	if [[ $run_coupled_model = true ]]
578	then
579
580	if [[ -n $coupled_dist ]]
581	then
582
583	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
584	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
585
586	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
587	then
588
589	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
590	printf "\n PEs (total) : $numprocs"
591	printf "\n PEs (atmosphere): $numprocs_atmos"
592	printf "\n PEs (ocean) : $numprocs_ocean"
593	locat=coupling; exit
594
595	fi
596
597	else
598
599	(( numprocs_ocean = $numprocs / 2 ))
600	(( numprocs_atmos = $numprocs / 2 ))
601
602	fi
603	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
604
605	# GET coupled_mode FROM THE CONFIG FILE
606	line=""
607	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
608	while read line
609	do
610	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
611	then
612	coupled_mode="mpi2"
613	fi
614	done < tmp_mrun
615
616	fi
617
618
619	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
620	# ARCHIVIERUNG FEHLGESCHLAGEN IST
621	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
622	then
623	if [[ $ignore_archive_error = false ]]
624	then
625	printf "\n +++ data archiving of previous run failed"
626	printf "\n see directory \~/job_queue on remote machine"
627	locat=archive; exit
628	else
629	printf "\n +++ warning: data archiving in a previous run failed"
630	printf "\n MRUN continues, trying to get backup copy"
631	fi
632	fi
633
634
635	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
636	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
637	mrun_memory=$memory
638	mrun_group_number=$group_number
639	mrun_cpumax=$cpumax
640	mrun_numprocs=$numprocs
641
642
643	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
644	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
645	if [[ "$read_from_config" = false ]]
646	then
647
648	[[ $silent = false ]] && printf "\n Reading the configuration file... "
649	while read zeile
650	do
651	[[ $silent = false ]] && printf "."
652
653
654	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
655	# ERSETZEN
656	eval zeile=\"$zeile\"
657
658
659	# INTERPRETATION DER ZEILE
660	if [[ "$(echo $zeile)" = "" ]]
661	then
662	# LEERZEILE, KEINE AKTION
663	continue
664
665	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
666	then
667
668	# ZEILE IST KOMMENTARZEILE
669	true
670
671	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
672	then
673
674	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
675	zeile=$(echo $zeile \| cut -c2-)
676	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
677	var=`echo $zeile \| cut -d" " -f1`
678	value=`echo $zeile \| cut -d" " -s -f2`
679	for_host=`echo $zeile \| cut -d" " -s -f3`
680	for_cond1=`echo $zeile \| cut -d" " -s -f4`
681	for_cond2=`echo $zeile \| cut -d" " -s -f5`
682
683	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
684	then
685
686	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
687	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
688	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
689
690
691	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
692	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
693	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
694	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
695	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
696	# KONFIGURATIONSDATEI
697	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
698	then
699	eval $var=\$value
700
701	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
702	if [[ $do_trace = true ]]
703	then
704	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
705	fi
706	fi
707
708	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
709	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
710	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
711	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
712	if [[ $var = host ]]
713	then
714	if [[ -n $host && "$host" != $localhost ]]
715	then
716	do_batch=true
717	do_remote=true
718	case $host in
719	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
720	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
721	printf "\n is not available"
722	locat=nqs; exit;;
723	esac
724	else
725	host=$localhost
726	fi
727	fi
728
729	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
730	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
731	# DEN PROGRAMMEN BENOETIGT WERDEN
732	export $var
733	fi
734
735
736
737
738	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
739	then
740
741	# ZEILE DEFINIERT ERROR-KOMMANDO
742	(( iec = iec + 1 ))
743	zeile=$(echo $zeile \| cut -c4-)
744	err_command[$iec]="$zeile"
745
746	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
747	then
748
749	# ZEILE DEFINIERT INPUT-KOMMANDO
750	(( iic = iic + 1 ))
751	zeile=$(echo $zeile \| cut -c4-)
752	in_command[$iic]="$zeile"
753
754	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
755	then
756
757	# ZEILE DEFINIERT OUTPUT-KOMMANDO
758	(( ioc = ioc + 1 ))
759	zeile=$(echo $zeile \| cut -c4-)
760	out_command[$ioc]="$zeile"
761
762	else
763
764	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
765	# s2a: in/out - Feld
766	# s2b: loc - Feld (optional)
767	# s2c: tr/ar - Feld (optional)
768	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
769	s1=`echo $zeile \| cut -d" " -f1`
770	s2=`echo $zeile \| cut -d" " -s -f2`
771	s2a=$(echo $s2 \| cut -d":" -f1)
772	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
773	then
774	s2b=""
775	s2c=""
776	else
777	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
778	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
779	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
780	fi
781	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
782	s3=`echo $zeile \| cut -d" " -f3`
783	s4=`echo $zeile \| cut -d" " -s -f4`
784	s5=`echo $zeile \| cut -d" " -s -f5`
785	s6=`echo $zeile \| cut -d" " -s -f6`
786
787
788	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
789	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
790	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
791	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
792	# HANDEN SEIN MUSS (D.H. s2b = loc)
793	IFSALT="$IFS"; IFS="$IFS:"
794	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
795	then
796	found=false
797	for actual in $input_list
798	do
799	for formal in $s3
800	do
801	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
802	done
803	done
804	if [[ $found = true ]]
805	then
806	(( iin = iin + 1 ))
807	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
808	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
809	extin[$iin]=$s6
810	fi
811	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
812	then
813	found=false
814	for actual in $output_list
815	do
816	for formal in $s3
817	do
818	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
819	done
820	done
821	if [[ $found = true ]]
822	then
823	(( iout = iout + 1 ))
824	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
825	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
826	fi
827	elif [[ "$s2a" != in && "$s2a" != out ]]
828	then
829	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
830	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
831	locat=connect; exit
832	fi
833	IFS="$IFSALT"
834	fi
835	done < $config_file
836
837	else
838
839
840	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
841	[[ $silent = false ]] && printf "..."
842	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
843	export interpreted_config_file=.icf.$RANDOM
844
845
846
847	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
848	# VERFUEGUNG STELLEN
849	cat > .mrun_environment << %%END%%
850	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
851	config_file = '$config_file', do_remote = '$do_remote',
852	do_trace = '$do_trace', host = '$host',
853	input_list = '$input_list', icf = '$interpreted_config_file',
854	localhost = '$localhost', output_list = '$output_list' /
855
856	%%END%%
857
858	if [[ $localhost_realname = "sx-fep" ]]
859	then
860	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
861	else
862
863	if [[ "$host" != $localhost ]]
864	then
865
866	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
867	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
868	if [[ $? != 0 ]]
869	then
870	printf "\n\n +++ no interpret_config found"
871	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
872	locat=interpret_config; exit
873	fi
874	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
875	$interpret_config_executable
876
877	else
878
879	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
880	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
881	then
882	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
883	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
884	locat=interpret_config; exit
885	else
886	interpret_config${block}.x
887	fi
888
889	fi
890	fi
891	rm .mrun_environment
892
893
894	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
895	chmod u+x $interpreted_config_file
896	export PATH=$PATH:.
897	. $interpreted_config_file
898	rm $interpreted_config_file
899
900	fi
901
902
903	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
904	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
905	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
906	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
907	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
908	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
909	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
910
911
912	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
913	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
914	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
915	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
916	if [[ "$SOURCES_COMPLETE" = "" ]]
917	then
918
919	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
920	# VEREINBART WURDE
921	source_path=""
922	line=""
923	grep "%source_path" $config_file > tmp_mrun
924	while read line
925	do
926	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
927	then
928	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
929	then
930	global_source_path=`echo $line \| cut -d" " -f2`
931	fi
932	fi
933	done < tmp_mrun
934
935	line=""
936	found=false
937	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
938	while read line
939	do
940	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
941	then
942	if [[ $found = true ]]
943	then
944	printf "\n\n +++ more than one source path found in configuration file"
945	printf "\n for local host \"$localhost\" "
946	locat=source_path; exit
947	fi
948	source_path=`echo $line \| cut -d" " -f2`
949	found=true
950	fi
951	done < tmp_mrun
952	rm tmp_mrun
953
954	if [[ "$source_path" = "" ]]
955	then
956	if [[ "$global_source_path" != "" ]]
957	then
958	source_path=$global_source_path
959	else
960	printf "\n\n +++ no source path found in configuration file"
961	printf "\n for local host \"$localhost\" "
962	locat=source_path; exit
963	fi
964	fi
965	eval source_path=$source_path
966
967	if [[ ! -d $source_path ]]
968	then
969	printf "\n\n +++ source path \"$source_path\" on local host"
970	printf "\n \"$localhost\" does not exist"
971	locat=source_path; exit
972	fi
973
974	fi
975
976
977	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
978	# DURCH OPTION -G MITGETEILT)
979	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
980	then
981	global_revision=`svnversion $source_path 2>/dev/null`
982	global_revision="Rev: $global_revision"
983	fi
984
985
986	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
987	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
988	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
989	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
990	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
991	if [[ -n $host && "$host" != $localhost ]]
992	then
993	do_batch=true
994	do_remote=true
995	case $host in
996	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
997	(*) printf "\n"
998	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
999	printf "\n is not available"
1000	locat=nqs; (( iec = 0 )); exit;;
1001	esac
1002	else
1003	host=$localhost
1004	fi
1005
1006
1007	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1008	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1009	then
1010
1011	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1012	if [[ ! -n $numprocs ]]
1013	then
1014	printf "\n"
1015	printf "\n +++ option \"-K parallel\" requires additional specification"
1016	printf "\n of the number of processors to be used by"
1017	printf "\n mrun-option \"-X\" or by environment-variable"
1018	printf "\n \"numprocs\" in the configuration file"
1019	locat=numprocs; (( iec = 0 )); exit
1020	fi
1021
1022	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1023	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1024	# GESAMTPROZESSORANZAHL IST
1025	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1026	then
1027	printf "\n"
1028	printf "\n +++ option \"-T\" (tasks per node) is missing"
1029	printf "\n set -T option or define tasks_per_node in the config file"
1030	locat=tasks_per_node; (( iec = 0 )); exit
1031	fi
1032	if [[ $host != lcflow && $host != lcxt5m ]]
1033	then
1034	(( ival = $tasks_per_node ))
1035	(( pes = numprocs ))
1036	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1037	# then
1038	# (( pes = pes - 1 ))
1039	# fi
1040	(( ii = pes / ival ))
1041	if (( pes - ii * ival > 0 ))
1042	then
1043	printf "\n"
1044	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1045	printf "\n divisor of the total number of processors (option \"-X\")"
1046	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1047	locat=tasks_per_node; (( iec = 0 )); exit
1048	fi
1049	fi
1050
1051
1052	# IBMY HAT NUR EINEN KNOTEN
1053	if [[ $host = ibmy ]]
1054	then
1055	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1056	then
1057	printf "\n"
1058	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1059	printf "\n total number of processors (option \"-X\")"
1060	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1061	locat=tasks_per_node; (( iec = 0 )); exit
1062	fi
1063	fi
1064
1065
1066	# SETTINGS FOR SUBJOB-COMMAND
1067	OOPT="-O $threads_per_task"
1068
1069	# GESAMTZAHL DER KNOTEN BESTIMMEN
1070	if [[ "$tasks_per_node" != "" ]]
1071	then
1072	TOPT="-T $tasks_per_node"
1073	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1074	fi
1075
1076	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1077	# SETZEN
1078	if [[ $node_usage = default ]]
1079	then
1080	if [[ $host = ibms ]]
1081	then
1082	node_usage=shared
1083	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1084	then
1085	node_usage=singlejob
1086	else
1087	node_usage=not_shared
1088	fi
1089	fi
1090
1091	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1092	then
1093	printf "\n"
1094	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1095	printf "\n \"shared\" or \"not_shared\""
1096	locat=tasks_per_node; (( iec = 0 )); exit
1097	fi
1098
1099	fi
1100
1101	# PRUEFEN, OB HOSTFILE EXISTIERT
1102	if [[ -n $hostfile ]]
1103	then
1104	if [[ ! -f $hostfile ]]
1105	then
1106	printf "\n"
1107	printf "\n +++ hostfile \"$hostfile\" does not exist"
1108	locat=hostfile; exit
1109	fi
1110	fi
1111
1112	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1113	if [[ $host = ibmy && $do_remote = false ]]
1114	then
1115	if [[ ! -f $HOME/.rhosts ]]
1116	then
1117	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1118	printf "\n\n *** file:"
1119	printf "\n $HOME/.rhosts"
1120	printf "\n was created\n"
1121	fi
1122	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1123	then
1124	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1125	printf "\n\n *** file:"
1126	printf "\n $HOME/.rhosts"
1127	printf "\n was extended by the name of the current host\n"
1128	fi
1129	fi
1130
1131
1132	# Set default value for the maximum number of parallel io streams
1133	if [[ "$maximum_parallel_io_streams" = "" ]]
1134	then
1135	maximum_parallel_io_streams=$numprocs
1136	fi
1137
1138
1139	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1140	if [[ "$scp_port" != "" ]]
1141	then
1142	PORTOPT="-P $scp_port"
1143	SSH_PORTOPT="-p $scp_port"
1144	fi
1145
1146
1147	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1148	if [[ $queue = none ]]
1149	then
1150	case $host in
1151	(ibmh) queue=no_class;;
1152	(ibmkisti) queue=class.32plus;;
1153	(ibmy) queue=parallel;;
1154	(lckiaps) queue=normal;;
1155	(lckyoto) queue=ph;;
1156	(lckyuh) queue=fx-single;;
1157	(lckyut) queue=cx-single;;
1158	(lcsgib) queue=testq;;
1159	(lcsgih) queue=testq;;
1160	(lctit) queue=S;;
1161	(nech) queue=none;;
1162	(necriam) queue=SP;;
1163	(unics) queue=unics;;
1164	esac
1165	fi
1166
1167
1168	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1169	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1170	# ERMITTELN
1171	(( i = 0 ))
1172	while (( i < iin ))
1173	do
1174	(( i = i + 1 ))
1175	(( maxcycle = 0 ))
1176
1177	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1178	if [[ "${actionin[$i]}" = di ]]
1179	then
1180	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1181	# REM-MASCHINE AUSWERTEN
1182	eval filename=${pathin[$i]}/${endin[$i]}
1183	else
1184	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1185	# REM-MASCHINE AUSWERTEN
1186	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1187	fi
1188	eval pathname=${pathin[$i]}
1189
1190	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1191	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1192	then
1193	filename_input=$filename
1194	fi
1195
1196	# PRUEFEN AUF VORHANDENSEIN
1197	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1198	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1199	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1200	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1201	then
1202	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1203	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1204	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1205	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1206	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1207	if [[ "${transin[$i]}" != "locopt" ]]
1208	then
1209	printf "\n\n +++ INPUT-file: "
1210	if [[ "${extin[$i]}" = "" ]]
1211	then
1212	printf "\n $filename"
1213	else
1214	printf "\n $filename.${extin[$i]}"
1215	fi
1216	printf "\n does not exist\n"
1217	locat=input; exit
1218	else
1219	transin[$i]="unavailable"
1220	fi
1221	else
1222
1223	# ZYKLUSNUMMER FESTSTELLEN
1224	ls -1 -d $filename > filelist 2>/dev/null
1225	ls -1 -d $filename.* >> filelist 2>/dev/null
1226	while read zeile
1227	do
1228	cycle=$(echo $zeile \| cut -f2 -d".")
1229	if [[ "$cycle" = "$zeile" ]]
1230	then
1231	(( icycle = 0 ))
1232	elif [[ "$cycle" = "${extin[$i]}" ]]
1233	then
1234	(( icycle = 0 ))
1235	else
1236	(( icycle = $cycle ))
1237	fi
1238	if (( icycle > maxcycle ))
1239	then
1240	(( maxcycle = icycle ))
1241	file_to_be_used=$zeile
1242	fi
1243	done <filelist
1244	rm filelist
1245
1246	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1247	if (( maxcycle > 0 ))
1248	then
1249	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1250	then
1251	filename=${filename}.$maxcycle.${extin[$i]}
1252	else
1253	filename=${filename}.$maxcycle
1254	fi
1255	else
1256	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1257	then
1258	filename=${filename}.${extin[$i]}
1259	fi
1260	fi
1261
1262	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1263	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1264	absnamein[$i]=$filename
1265	if (( maxcycle > 0 ))
1266	then
1267	if [[ "${actionin[$i]}" = di ]]
1268	then
1269	frelin[$i]=${endin[$i]}.$maxcycle
1270	else
1271	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1272	fi
1273	else
1274	if [[ "${actionin[$i]}" = di ]]
1275	then
1276	frelin[$i]=${endin[$i]}
1277	else
1278	frelin[$i]=${afname}${endin[$i]}
1279	fi
1280	fi
1281
1282	fi
1283	done
1284
1285	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1286	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1287	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1288	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1289	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1290	(( i = 0 ))
1291	while (( i < iout ))
1292	do
1293	(( i = i + 1 ))
1294	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1295	then
1296	if [[ "${actionout[$i]}" = tr ]]
1297	then
1298	actionout[$i]=""
1299	elif [[ "${actionout[$i]}" = trpe ]]
1300	then
1301	actionout[$i]=pe
1302	elif [[ "${actionout[$i]}" = tra ]]
1303	then
1304	actionout[$i]=a
1305	fi
1306	(( maxcycle = 0 ))
1307	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1308	eval catalogname=${pathout[$i]}
1309	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1310	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1311	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1312	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1313	then
1314
1315	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1316	if cat /dev/null > $filename
1317	then
1318	rm $filename
1319	else
1320
1321	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1322	if [[ ! -d $catalogname ]]
1323	then
1324	if mkdir -p $catalogname
1325	then
1326	printf "\n\n *** directory:"
1327	printf "\n $catalogname"
1328	printf "\n was created\n"
1329	else
1330	printf "\n\n +++ OUTPUT-file:"
1331	printf "\n $filename"
1332	printf "\n cannot be created, because directory does not exist"
1333	printf "\n and cannot be created either"
1334	printf "\n"
1335	locat=output ; exit
1336	fi 2>/dev/null
1337	else
1338	printf "\n\n +++ OUTPUT-file:"
1339	printf "\n $filename"
1340	printf "\n cannot be created, although directory exists"
1341	printf "\n"
1342	locat=output ; exit
1343	fi
1344	fi 2>/dev/null
1345	else
1346
1347	# ZYKLUSNUMMER FESTSTELLEN
1348	ls -1 -d $filename > filelist 2>/dev/null
1349	ls -1 -d $filename.* >> filelist 2>/dev/null
1350	while read zeile
1351	do
1352	cycle=$(echo $zeile \| cut -f2 -d".")
1353	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1354	then
1355	(( icycle = 1 ))
1356	else
1357	(( icycle = $cycle + 1 ))
1358	fi
1359	if (( icycle > maxcycle ))
1360	then
1361	(( maxcycle = icycle ))
1362	fi
1363	done <filelist
1364	rm filelist
1365	fi
1366
1367	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1368	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1369	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1370	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1371	if [[ "${actionout[$i]}" != a ]]
1372	then
1373	if (( maxcycle > 0 ))
1374	then
1375	filename=${filename}.$maxcycle
1376	if cat /dev/null > $filename
1377	then
1378	rm $filename
1379	else
1380	printf "\n +++ OUTPUT-file:"
1381	printf "\n $filename"
1382	printf "\n cannot be created"
1383	locat=output ; exit
1384	fi
1385	fi
1386	else
1387	(( maxcycle = maxcycle - 1 ))
1388	if (( maxcycle > 0 ))
1389	then
1390	filename=${filename}.$maxcycle
1391	fi
1392	fi
1393
1394	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1395	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1396	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1397	pathout[$i]=$filename
1398	if (( maxcycle > 0 ))
1399	then
1400	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1401	else
1402	frelout[$i]=${fname}${endout[$i]}
1403	fi
1404
1405	fi
1406	done
1407
1408
1409	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1410	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1411	then
1412	if [[ "$dvr_inc" = "" ]]
1413	then
1414	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1415	printf "\n This is required for the dvrp_graphics package.\n"
1416	locat=dvr; exit
1417	fi
1418	if [[ "$dvr_lib" = "" ]]
1419	then
1420	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1421	printf "\n This is required for the dvrp_graphics package.\n"
1422	locat=dvr; exit
1423	fi
1424	fi
1425
1426
1427	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1428	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1429	# UEBERSETZT ZU WERDEN)
1430	if [[ "$mainprog" = "" && "$executable" = "" ]]
1431	then
1432	printf "\n +++ neither main program nor executable defined"
1433	locat=source; exit
1434	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1435	then
1436	printf "\n +++ main program as well as executable defined"
1437	locat=source; exit
1438	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1439	then
1440	do_compile=false
1441	fi
1442
1443
1444	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1445	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1446	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1447	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1448	then
1449	rm -rf SOURCES_FOR_RUN_$fname
1450	mkdir SOURCES_FOR_RUN_$fname
1451	fi
1452
1453
1454	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1455	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1456	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1457	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1458	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1459	then
1460
1461	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1462
1463	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1464	then
1465
1466	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1467	source_list=""
1468	cd $source_path
1469
1470
1471	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1472	if [[ ! -d .svn ]]
1473	then
1474	printf "\n\n +++ source directory"
1475	printf "\n \"$source_path\" "
1476	printf "\n is not under control of \"subversion\"."
1477	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1478	fi
1479
1480
1481	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1482	Filenames=""
1483	svn status > tmp_mrun
1484	while read line
1485	do
1486	firstc=`echo $line \| cut -c1`
1487	if [[ $firstc = M \|\| $firstc = "?" ]]
1488	then
1489	Name=`echo "$line" \| cut -c8-`
1490	extension=`echo $Name \| cut -d. -f2`
1491	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1492	then
1493	Filenames="$Filenames "$Name
1494	fi
1495	fi
1496	done < tmp_mrun
1497
1498
1499	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1500	for dateiname in $Filenames
1501	do
1502	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1503	source_list=$source_list"$dateiname "
1504	done
1505
1506	cd - > /dev/null
1507
1508
1509	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1510	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1511	# VORHANDEN
1512	elif [[ "$source_list" != "" && $restart_run != true ]]
1513	then
1514
1515	cd $source_path
1516
1517	for filename in $source_list
1518	do
1519
1520	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1521	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1522	then
1523	printf "\n +++ source code file: $filename"
1524	printf "\n must not contain (\"/\") "
1525	locat=source; exit
1526	fi
1527
1528	if [[ ! -f $filename ]]
1529	then
1530	printf "\n +++ source code file: $filename"
1531	printf "\n does not exist"
1532	locat=source; exit
1533	else
1534	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1535	fi
1536
1537	done
1538
1539	cd - > /dev/null
1540
1541	fi
1542
1543
1544	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1545	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1546	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1547	if [[ $restart_run != true ]]
1548	then
1549
1550	if [[ ! -f "$source_path/$mainprog" ]]
1551	then
1552	printf "\n\n +++ main program: $mainprog"
1553	printf "\n does not exist in source directory"
1554	printf "\n \"$source_path\"\n"
1555	locat=source; exit
1556	else
1557	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1558	then
1559	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1560	source_list=${mainprog}" $source_list"
1561	fi
1562	fi
1563	fi
1564
1565
1566	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1567	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1568	if [[ "$restart_run" != true ]]
1569	then
1570	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1571	if [[ ! -f $makefile ]]
1572	then
1573	printf "\n +++ file \"$makefile\" does not exist"
1574	locat=make; exit
1575	else
1576	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1577	fi
1578	fi
1579
1580
1581	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1582	if [[ $restart_run != true && "$add_source_path" != "" ]]
1583	then
1584
1585	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1586	if [[ ! -d $add_source_path ]]
1587	then
1588	printf "\n\n +++ WARNING: additional source code directory"
1589	printf "\n \"$add_source_path\" "
1590	printf "\n does not exist or is not a directory."
1591	printf "\n No source code will be used from this directory!\n"
1592	add_source_path=""
1593	if [[ $silent == false ]]
1594	then
1595	sleep 3
1596	fi
1597	else
1598
1599	cd $add_source_path
1600	found=false
1601
1602	Names=$(ls -1 *.f90 2>&1)
1603	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1604	Names=$(ls -1 *.F90 2>&1)
1605	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1606	Names=$(ls -1 *.F 2>&1)
1607	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1608	Names=$(ls -1 *.f 2>&1)
1609	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1610	Names=$(ls -1 *.c 2>&1)
1611	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1612
1613	cd - > /dev/null
1614	cd SOURCES_FOR_RUN_$fname
1615
1616	# COPY MAKEFILE IF EXISTING
1617	if [[ -f $add_source_path/Makefile ]]
1618	then
1619	printf "\n\n *** user Makefile from directory"
1620	printf "\n \"$add_source_path\" is used \n"
1621	if [[ $silent == false ]]
1622	then
1623	sleep 1
1624	fi
1625	cp $add_source_path/Makefile .
1626	fi
1627
1628	for dateiname in $AddFilenames
1629	do
1630	if [[ -f $dateiname ]]
1631	then
1632	printf "\n +++ source code file \"$dateiname\" found in additional"
1633	printf "\n source code directory \"$add_source_path\" "
1634	printf "\n but was also given with option \"-s\" which means that it should be taken"
1635	printf "\n from directory \"$source_path\"."
1636	locat=source; exit
1637	fi
1638
1639	cp $add_source_path/$dateiname .
1640	source_list="$source_list $dateiname"
1641
1642	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1643	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1644	then
1645	printf "\n\n +++ user file \"$dateiname\" "
1646	printf "\n is not listed in Makefile \n"
1647	locat=source; exit
1648	else
1649
1650	# Default User-Interface von der Liste entfernen, falls Datei
1651	# ein User-Interface enthaelt
1652	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1653	# then
1654	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1655	# then
1656	# rm -rf user_interface.f90
1657	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1658	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1659	# printf "\n since a user-interface is found in file"
1660	# printf "\n \"$add_source_path/$dateiname\" \n"
1661	# sleep 3
1662	# else
1663	if [[ $found = false ]]
1664	then
1665	found=true
1666	printf "\n\n *** following user file(s) added to the"
1667	printf " files to be translated:\n "
1668	fi
1669	printf "$dateiname "
1670	if [[ $silent == false ]]
1671	then
1672	sleep 0.5
1673	fi
1674
1675	fi
1676	done
1677	[[ $found = true ]] && printf "\n"
1678	cd - > /dev/null
1679	fi
1680	fi
1681
1682
1683	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1684	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1685	if [[ $restart_run != true && -n $package_list ]]
1686	then
1687
1688	cd $source_path
1689
1690	for package in $package_list
1691	do
1692
1693	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1694
1695	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1696	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1697	# LIEFERT
1698	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1699
1700
1701	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1702	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1703	for source_list_name in $package_source_list
1704	do
1705	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1706	then
1707
1708	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1709	ending=`echo $source_list_name \| cut -f2 -d.`
1710	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1711	then
1712	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1713	source_list="$source_list $source_list_name"
1714	fi
1715	fi
1716	done
1717	done
1718
1719	cd - > /dev/null
1720	fi
1721
1722
1723	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1724	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1725	# if [[ "$restart_run" != true ]]
1726	# then
1727	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1728	# if [[ ! -f $makefile ]]
1729	# then
1730	# printf "\n +++ file \"$makefile\" does not exist"
1731	# locat=make; exit
1732	# else
1733	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1734	# fi
1735	# fi
1736
1737	fi # do_compile=true
1738
1739
1740	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1741	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1742	if [[ $do_compile = true ]]
1743	then
1744
1745	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1746	# ZUSAMMENSETZEN
1747	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1748	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1749	then
1750	cpp_options="${cpp_options},-D__ibm=__ibm"
1751	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1752	then
1753	cpp_options="$cpp_options -D__nec"
1754	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1755	then
1756	cpp_options="$cpp_options -D__lc"
1757	else
1758	cpp_options="$cpp_options -D__$localhost"
1759	fi
1760
1761	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1762	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1763	then
1764	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1765	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1766	else
1767	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1768	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1769	fi
1770
1771	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1772	if [[ -n $package_list ]]
1773	then
1774	for package in $package_list
1775	do
1776	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1777	then
1778	if [[ $package != "dvrp_graphics+1PE" ]]
1779	then
1780	cpp_options="${cpp_options},-D__$package=__$package"
1781	else
1782	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1783	export use_seperate_pe_for_dvrp_output=true
1784	fi
1785	else
1786	if [[ $package != "dvrp_graphics+1PE" ]]
1787	then
1788	cpp_options="$cpp_options -D__$package"
1789	else
1790	cpp_options="$cpp_options -D__dvrp_graphics"
1791	export use_seperate_pe_for_dvrp_output=true
1792	fi
1793	fi
1794	done
1795	fi
1796
1797	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1798	if [[ -n $cpp_opts ]]
1799	then
1800	for popts in $cpp_opts
1801	do
1802	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1803	then
1804	cpp_options="${cpp_options},-D__$popts=__$popts"
1805	else
1806	cpp_options="$cpp_options -D__$popts"
1807	fi
1808	done
1809	fi
1810
1811	else
1812
1813
1814	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1815	if [[ $do_remote = false ]]
1816	then
1817	if [[ ! -f $executable ]]
1818	then
1819	printf "\n +++ executable file: $executable"
1820	printf "\n does not exist"
1821	locat=executable; exit
1822	fi
1823	fi
1824	fi
1825
1826
1827	# JOBMODUS FESTSTELLEN
1828	if [[ "$ENVIRONMENT" = BATCH ]]
1829	then
1830	jobmo=BATCH
1831	else
1832	jobmo=INTERACTIVE
1833	fi
1834
1835
1836	# no interactive runs on lctit
1837	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1838	then
1839	printf "\n +++ no interactive runs allowed on host \"$host\" "
1840	printf "\n please submit batch job using mrun option \"-b\" \n"
1841	locat=normal; exit
1842	fi
1843
1844
1845	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1846	# DURCH BENUTZER ANDERWEITIG VEREINBART
1847	if [[ "$compiler_name" = "" ]]
1848	then
1849
1850	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1851	locat=compiler_name; exit
1852
1853	fi
1854
1855
1856	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1857	[[ $localhost = necriam ]] && compiler_name=mpif90
1858
1859
1860
1861	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1862	kennung=$RANDOM
1863	if [[ "$tmp_user_catalog" = "" ]]
1864	then
1865	if [[ $localhost = ibmh ]]
1866	then
1867	tmp_user_catalog=$SCRATCH
1868	elif [[ $localhost = nech ]]
1869	then
1870	tmp_user_catalog=$WRKSHR
1871	else
1872	tmp_user_catalog=/tmp
1873	fi
1874	fi
1875	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1876
1877
1878	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1879	# BESTIMMEN
1880	if [[ "$tmp_data_catalog" = "" ]]
1881	then
1882	if [[ $localhost = nech ]]
1883	then
1884	tmp_data_catalog=$WRKSHR/mrun_restart_data
1885	else
1886	tmp_data_catalog=/tmp/mrun_restart_data
1887	fi
1888	fi
1889
1890
1891	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1892	# ERSETZEN
1893	if [[ $do_remote = false && $do_compile = true ]]
1894	then
1895	eval fopts=\"$fopts\"
1896	eval lopts=\"$lopts\"
1897	fi
1898
1899
1900
1901	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1902	fopts="$fopts $netcdf_inc $dvr_inc"
1903	lopts="$lopts $netcdf_lib $dvr_lib"
1904	ROPTS="$ropts"
1905	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1906	# then
1907	XOPT="-X $numprocs"
1908	# fi
1909
1910
1911
1912	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1913	# GRAMM BENOETIGT
1914	done=false
1915	while [[ $done = false ]]
1916	do
1917	cputime=$cpumax
1918	if (( $cputime == 0 ))
1919	then
1920	if [[ $do_batch = true ]]
1921	then
1922	printf "\n +++ cpu-time is undefined"
1923	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1924	printf "\n >>> "
1925	read cputime 1>/dev/null 2>&1
1926	else
1927	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1928	fi
1929	else
1930	done=true
1931	fi
1932	cpumax=$cputime
1933	done
1934
1935	(( minuten = cputime / 60 ))
1936	(( sekunden = cputime - minuten * 60 ))
1937
1938
1939	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1940	if [[ $do_batch = true ]]
1941	then
1942	done=false
1943	while [[ $done = false ]]
1944	do
1945	if (( memory == 0 ))
1946	then
1947	printf "\n +++ memory demand is undefined"
1948	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1949	printf "\n >>> "
1950	read memory 1>/dev/null 2>&1
1951	else
1952	done=true
1953	fi
1954	done
1955	fi
1956
1957
1958	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1959	if [[ $do_remote = true && -z $remote_username ]]
1960	then
1961	while [[ -z $remote_username ]]
1962	do
1963	printf "\n +++ username on remote host \"$host\" is undefined"
1964	printf "\n >>> Please type username:"
1965	printf "\n >>> "
1966	read remote_username
1967	done
1968	mc="$mc -u$remote_username"
1969	fi
1970
1971	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1972	if [[ "$login_init_cmd" != "" ]]
1973	then
1974	export init_cmds="${login_init_cmd};"
1975	fi
1976
1977
1978	# set module load command and export for subjob
1979	if [[ "$modules" != "" ]]
1980	then
1981	if [[ $host = lctit ]]
1982	then
1983	export module_calls=". $modules"
1984	else
1985	export module_calls="module load ${modules};"
1986	fi
1987	fi
1988
1989	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1990	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1991	then
1992	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1993	then
1994	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1995	fi
1996	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1997	# then
1998	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1999	# echo "*** module_calls = $module_calls"
2000	# fi
2001	fi
2002
2003
2004	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2005	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2006	then
2007	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2008	then
2009	mpilib=mpt
2010	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2011	then
2012	mpilib=mvapich
2013	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2014	then
2015	mpilib=impi
2016	fi
2017	fi
2018
2019
2020
2021	###########################################################################
2022	# HEADER-AUSGABE
2023	###########################################################################
2024
2025
2026	calltime=$(date)
2027	printf "\n"
2028	# [[ $silent = false ]] && clear
2029	printf "#------------------------------------------------------------------------# \n"
2030	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2031	printf "\| \| \n"
2032	spalte1="called on:"; spalte2=$localhost_realname
2033	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2034	if [[ $local_compile = false ]]
2035	then
2036	if [[ $do_remote = true ]]
2037	then
2038	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2039	else
2040	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2041	fi
2042	else
2043	spalte1="compiling test only!"; spalte2=""
2044	fi
2045	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2046	if [[ -n $numprocs ]]
2047	then
2048	if [[ $run_coupled_model = false ]]
2049	then
2050	spalte1="number of PEs:"; spalte2=$numprocs
2051	else
2052	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2053	fi
2054	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2055	fi
2056	if [[ -n $tasks_per_node ]]
2057	then
2058	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2059	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2060	fi
2061	if [[ $maximum_parallel_io_streams != $numprocs ]]
2062	then
2063	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2064	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2065	fi
2066	if [[ $use_openmp = true ]]
2067	then
2068	spalte1="threads per task:"; spalte2="$threads_per_task"
2069	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2070	fi
2071	printf "\| \| \n"
2072	if [[ $do_compile = true ]]
2073	then
2074	if [[ "$mopts" != "" ]]
2075	then
2076	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2077	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2078	zeile=$(echo "$mopts" \| cut -c46-)
2079	while [[ "$zeile" != "" ]]
2080	do
2081	spalte1=""
2082	spalte2=$(echo "$zeile" \| cut -c-45)
2083	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2084	zeile=$(echo "$zeile" \| cut -c46-)
2085	done
2086	fi
2087
2088	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2089	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2090	zeile=$(echo "$cpp_options" \| cut -c46-)
2091	while [[ "$zeile" != "" ]]
2092	do
2093	spalte1=""
2094	spalte2=$(echo "$zeile" \| cut -c-45)
2095	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2096	zeile=$(echo "$zeile" \| cut -c46-)
2097	done
2098
2099	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2100	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2101	zeile=$(echo "$fopts" \| cut -c46-)
2102	while [[ "$zeile" != "" ]]
2103	do
2104	spalte1=""
2105	spalte2=$(echo "$zeile" \| cut -c-45)
2106	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2107	zeile=$(echo "$zeile" \| cut -c46-)
2108	done
2109
2110	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2111	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2112	zeile=$(echo "$lopts" \| cut -c46-)
2113	while [[ "$zeile" != "" ]]
2114	do
2115	spalte1=""
2116	spalte2=$(echo "$zeile" \| cut -c-45)
2117	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2118	zeile=$(echo "$zeile" \| cut -c46-)
2119	done
2120
2121	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2122	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2123	zeile=$(echo "$modules" \| cut -c46-)
2124	while [[ "$zeile" != "" ]]
2125	do
2126	spalte1=""
2127	spalte2=$(echo "$zeile" \| cut -c-45)
2128	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2129	zeile=$(echo "$zeile" \| cut -c46-)
2130	done
2131
2132	spalte1="main program:"; spalte2=$mainprog
2133	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2134	else
2135	spalte1=executable:; spalte2=$executable
2136	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2137	fi
2138	printf "\| \| \n"
2139	spalte1="base name of files:"; spalte2=$fname
2140	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2141	if [[ $fname != $afname ]]
2142	then
2143	spalte1="base name of input files:"; spalte2=$afname
2144	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2145	fi
2146	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2147	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2148	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2149	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2150
2151	if [[ "$ocean_file_appendix" = true ]]
2152	then
2153	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2154	fi
2155
2156	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2157	then
2158	spalte1="memory demand / PE":; spalte2="$memory MB"
2159	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2160	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2161	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2162	fi
2163
2164	if [[ $do_compile = true ]]
2165	then
2166	printf "\| \| \n"
2167	printf "\| Files to be compiled: \| \n"
2168	zeile=$source_list
2169	while [[ "$zeile" != "" ]]
2170	do
2171	linestart=$(echo $zeile \| cut -c-70)
2172	printf "\| %-70s \| \n" "$linestart"
2173	zeile=$(echo "$zeile" \| cut -c71-)
2174	done
2175	fi
2176	printf "#------------------------------------------------------------------------#"
2177
2178
2179
2180	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2181	if [[ $do_trace = true ]]
2182	then
2183	(( i = 0 ))
2184	while (( i < iin ))
2185	do
2186	(( i = i + 1 ))
2187	if (( i == 1 ))
2188	then
2189	printf "\n\n >>> INPUT-file assignments:\n"
2190	fi
2191	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2192	done
2193	(( i = 0 ))
2194	while (( i < iout ))
2195	do
2196	(( i = i + 1 ))
2197	if (( i == 1 ))
2198	then
2199	printf "\n\n >>> OUTPUT-file assignments:\n"
2200	fi
2201	printf "\n ${localout[$i]} : ${pathout[$i]}"
2202	done
2203	(( i = 0 ))
2204	while (( i < iic ))
2205	do
2206	(( i = i + 1 ))
2207	if (( i == 1 ))
2208	then
2209	printf "\n\n >>> INPUT-commands:\n"
2210	fi
2211	printf "\n ${in_command[$i]}"
2212	done
2213	(( i = 0 ))
2214	while (( i < ioc ))
2215	do
2216	(( i = i + 1 ))
2217	if (( i == 1 ))
2218	then
2219	printf "\n\n >>> OUTPUT-commands:\n"
2220	fi
2221	printf "\n ${out_command[$i]}"
2222	done
2223	fi
2224
2225
2226	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2227	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2228	then
2229	antwort=dummy
2230	printf "\n\n"
2231	printf " >>> everything o.k. (y/n) ? "
2232	while read antwort
2233	do
2234	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2235	then
2236	printf " >>> everything o.k. (y/n) ? "
2237	else
2238	break
2239	fi
2240	done
2241	if [[ $antwort = n \|\| $antwort = N ]]
2242	then
2243	locat=user_abort; (( iec = 0 )); exit
2244	fi
2245	if [[ $do_batch = true ]]
2246	then
2247	printf " >>> batch-job will be created and submitted"
2248	else
2249	if [[ $local_compile = false ]]
2250	then
2251	printf " >>> MRUN will now continue to execute on this machine"
2252	else
2253	printf " >>> a test compilation will now be carried out on this machine"
2254	fi
2255	fi
2256	fi
2257
2258
2259	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2260	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2261	check_depository="${working_directory}/trunk/UTIL"
2262	check_sources="${working_directory}/tmp_check_namelist_files"
2263	skip_check=false
2264
2265	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2266	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2267	then
2268	skip_check=true
2269	reason="run on remote host or parameter file check has not been compiled."
2270	fi
2271	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2272	then
2273	skip_check=true
2274	reason="parameter file check has not been compiled."
2275	fi
2276
2277	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2278	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2279	then
2280	skip_check=true
2281	reason="serial run."
2282	fi
2283
2284	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2285	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2286	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2287	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2288	if [[ $check_namelist_files == false ]]
2289	then
2290	skip_check=true
2291	reason="-z option set."
2292	fi
2293
2294	if [[ $fromhost != $localhost ]]
2295	then
2296	skip_check=true
2297	reason="submitting host is local host."
2298	fi
2299
2300	if [[ $run_coupled_model == true ]]
2301	then
2302	skip_check=true
2303	reason="coupled run."
2304	fi
2305
2306	if [[ $restart_run == true ]]
2307	then
2308	skip_check=true
2309	reason="restart run."
2310	fi
2311
2312	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2313	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2314	last_char=`echo $filename_input \| cut -c $last_char_int`
2315	if [[ "$last_char" == "f" ]]
2316	then
2317	skip_check=true
2318	reason="restart run."
2319	fi
2320
2321	if [[ $skip_check == false ]]
2322	then
2323	tmp_check=${working_directory}/tmp_check
2324
2325	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2326	# NOT NECESSARILY REQUIRED
2327	line=""
2328	found=false
2329	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2330	while read line1
2331	do
2332	line="$line1"
2333	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2334	then
2335	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2336	found=true
2337	fi
2338	done < $tmp_check
2339
2340	if [[ $found = false ]]
2341	then
2342	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2343	fi
2344
2345	rm -rf ${working_directory}/tmp_check
2346
2347	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2348	for item in $input_list
2349	do
2350	if [[ "$item" == "restart" ]]
2351	then
2352	check_restart=1
2353	else
2354	check_restart=0
2355	fi
2356	done
2357
2358	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2359	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2360	then
2361	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2362	locat=check_namelist; exit
2363	fi
2364
2365	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2366	if [[ $check_restart == 1 ]]
2367	then
2368
2369	filenamef="${filename_input}f"
2370	if [[ ! -f $filenamef ]]
2371	then
2372	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2373	check_restart=0
2374	answer=dummy
2375	printf "\n\n"
2376
2377	if [[ $silent == false ]]
2378	then
2379	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2380	do
2381	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2382	read answer
2383	done
2384	if [[ $answer = a \|\| $answer = A ]]
2385	then
2386	printf "\n +++ Aborting...."
2387	locat=normal; exit
2388	fi
2389	fi
2390	else
2391	check_restart=1
2392	fi
2393	fi
2394
2395	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2396	mkdir $check_sources
2397	cd $check_sources
2398
2399
2400	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2401	if [[ -d $add_source_path ]]
2402	then
2403	printf "\n\n *** copying files from $check_depository"
2404	cp $check_depository/check_namelist_files.tar ./
2405
2406	printf "\n\n *** untar of makefile and source files in $check_sources"
2407	tar -xf check_namelist_files.tar > /dev/null 2>&1
2408
2409	printf "\n\n *** adding user code."
2410	cp $add_source_path/* ./
2411	touch check_namelist_files.f90
2412
2413	# GET COMPILER OPTIONS AND PERFORM MAKE
2414	printf "\n\n *** compiling code if necessary...\n"
2415
2416	# workaround for batch jobs on local machine (lcxe6)
2417	if [[ $do_batch == true && $do_remote == false ]]
2418	then
2419	eval $init_cmds
2420	fi
2421
2422	# GET CHECK OPTIONS
2423	line=""
2424	found=false
2425
2426	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2427
2428	while read line1
2429	do
2430
2431	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2432	then
2433	line="$line1"
2434	fi
2435
2436	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2437	then
2438	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2439	line="$line "
2440	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2441	found=true
2442	fi
2443
2444	done < $tmp_check
2445	copts_check="$copts_check -D__check -D__parallel"
2446
2447	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2448
2449	# GET MAKE OUTPUT
2450	if [[ $? != 0 ]]
2451	then
2452	printf "\n +++ error during make."
2453	answer=dummy
2454	printf "\n\n"
2455	if [[ $silent == false ]]
2456	then
2457	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2458	do
2459	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2460	read answer
2461	done
2462	if [[ $answer = a \|\| $answer = A ]]
2463	then
2464	printf "\n +++ Aborting..."
2465	rm -rf $check_sources
2466	locat=normal; exit
2467	else
2468	skip_check=true
2469	fi
2470	else
2471	skip_check=true
2472	fi
2473	fi
2474	else
2475	cp $PALM_BIN/check_namelist_files.x ./
2476	fi
2477
2478	cp $filename_input ./PARIN
2479	if [[ $check_restart == 1 ]]
2480	then
2481	cp $filenamef ./PARINF
2482	fi
2483
2484	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2485	then
2486	printf "\n *** adding topography data"
2487	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2488
2489	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2490	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2491	# WHICH REQUIRE SUFFICIENT MEMORY
2492	ulimit -s unlimited
2493	fi
2494
2495	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2496	cat > ENVPAR << %%END%%
2497	&envpar run_identifier = '$fname', host = '$host',
2498	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2499	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2500	maximum_cpu_time_allowed = ${cpumax}.,
2501	revision = '$global_revision',
2502	local_dvrserver_running = $local_dvrserver_running /
2503
2504	%%END%%
2505
2506	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2507	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2508	then
2509	printf "\n +++ WARNING: check_namelist_files.x not found."
2510	answer=dummy
2511	printf "\n\n"
2512
2513	if [[ $silent == false ]]
2514	then
2515	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2516	do
2517	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2518	read answer
2519	done
2520	if [[ $answer = a \|\| $answer = A ]]
2521	then
2522	printf "\n +++ Aborting..."
2523	rm -rf $check_sources
2524	locat=normal; exit
2525	else
2526	printf "\n *** skipping parameter file check."
2527	fi
2528	fi
2529
2530	elif [[ $skip_check == false ]]
2531	then
2532	# STARTING THE PARAMETER FILE CHECK
2533	printf "\n\n *** starting parameter file check..."
2534
2535	# CHECKING THE P3D FILE
2536	printf "\n\n (1) checking $filename_input"
2537	echo "$numprocs 0 0" > VARIN
2538	errors=`./check_namelist_files.x < VARIN 2>&1`
2539
2540	check_error=false
2541	if [[ "$errors" == "" ]]
2542	then
2543	printf " --> o.k."
2544	else
2545	printf " --> failed."
2546	check_error=true
2547	printf "\n\n $errors"
2548	fi
2549
2550	# CHECKING THE PD3F FILE IF NECESSARY
2551	if [[ $check_restart == 1 && $check_error == false ]]
2552	then
2553	printf "\n\n (2) checking $filenamef"
2554
2555	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2556	# IN &INIPAR LIST
2557	found=false
2558	cat PARINF \| while read line
2559	do
2560	line=$(echo $line\|sed 's/ //g')
2561	if [[ $line == "&inipar" ]]
2562	then
2563	start_search=true
2564	fi
2565
2566	if [[ $start_search == true ]]
2567	then
2568	if [[ $line == "initializing_actions='read_restart_data'" ]]
2569	then
2570	found=true
2571	break
2572	fi
2573	fi
2574
2575	if [[ $line == "/" ]]
2576	then
2577	start_search=false
2578	fi
2579
2580	done
2581
2582	if [[ $found = false ]]
2583	then
2584	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2585	printf "\n in &inipar list in $fname$p3df_suffix."
2586	rm -rf $check_sources
2587	locat=check_namelist; exit
2588	fi
2589
2590	# READ max_user_pr FROM FILES
2591	if [[ -f parin_for_check ]]
2592	then
2593	read max_pr_user < parin_for_check
2594	else
2595	max_user_pr=0
2596	fi
2597
2598	echo "$numprocs 1 $max_pr_user" > VARIN
2599	errors=`./check_namelist_files.x < VARIN 2>&1`
2600
2601	if [[ "$errors" == "" ]]
2602	then
2603	printf " --> o.k."
2604	else
2605	printf " --> failed."
2606	check_error=true
2607	printf "\n\n $errors"
2608	fi
2609	fi
2610
2611	# REPORT ERRORS AND CONTINUE/EXIT
2612	if [[ $check_error == true ]]
2613	then
2614	printf "\n +++ errors found in the parameter file!\n"
2615	answer=dummy
2616	printf "\n\n"
2617
2618	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2619	do
2620	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2621	read answer
2622	done
2623
2624	if [[ $answer = a \|\| $answer = A ]]
2625	then
2626	printf "\n +++ Aborting..."
2627	rm -rf $check_sources
2628	locat=normal; exit
2629	fi
2630	else
2631	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2632	fi
2633	rm -rf $check_sources
2634	fi
2635	else
2636	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2637	fi
2638
2639	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2640	rm -rf $check_sources
2641	cd $working_directory
2642
2643
2644	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2645	# CHENDE AKTIONEN DURCHGEFUEHRT
2646	if [[ $do_batch = false ]]
2647	then
2648
2649
2650	# TEMPORAEREN KATALOG ERZEUGEN
2651	mkdir -p $TEMPDIR
2652	chmod go+rx $TEMPDIR
2653	tmpcreate=true
2654
2655	# set striping on lustre file system
2656	# if [[ $localhost = lcsgih ]]
2657	# then
2658	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2659	# lfs getstripe $TEMPDIR
2660	# fi
2661
2662
2663	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2664	# TEMPORAERES VERZEICHNIS KOPIEREN
2665	if [[ $do_compile = true ]]
2666	then
2667
2668	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2669	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2670	if [[ $localhost = nech ]]
2671	then
2672	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2673	if mkdir -p $TEMPDIR_COMPILE
2674	then
2675	printf "\n *** \"$TEMPDIR_COMPILE\" "
2676	printf "\n is generated as temporary directory for cross compiling\n"
2677	else
2678	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2679	printf "\n needed for cross compilation failed"
2680	locat=compile
2681	exit
2682	fi
2683	else
2684	TEMPDIR_COMPILE=$TEMPDIR
2685	fi
2686
2687
2688	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2689	line=""
2690	grep "%depository_path" $config_file > tmp_mrun
2691	while read line
2692	do
2693	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2694	then
2695	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2696	then
2697	global_depository_path=`echo $line \| cut -d" " -s -f2`
2698	fi
2699	fi
2700	done < tmp_mrun
2701
2702	line=""
2703	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2704	while read line
2705	do
2706	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2707	then
2708	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2709	then
2710	local_depository_path=`echo $line \| cut -d" " -s -f2`
2711	fi
2712	fi
2713	done < tmp_mrun
2714
2715	if [[ "$local_depository_path" = "" ]]
2716	then
2717	if [[ "$global_depository_path" != "" ]]
2718	then
2719	local_depository_path=$global_depository_path
2720	else
2721	printf "\n\n +++ no depository path found in configuration file"
2722	printf "\n for local host \"$localhost\" "
2723	printf "\n please set \"\%depository_path\" in configuration file\n"
2724	locat=config_file; exit
2725	fi
2726	fi
2727	eval local_depository_path=$local_depository_path
2728	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2729	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2730
2731
2732	basename=`echo $mainprog \| cut -f1 -d"."`
2733	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2734	if [[ ! -f $make_depository ]]
2735	then
2736	printf "\n"
2737	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2738	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2739	else
2740	cp $make_depository $TEMPDIR_COMPILE
2741	cd $TEMPDIR_COMPILE
2742	tar -xf $make_depository > /dev/null 2>&1
2743	cd - > /dev/null
2744	fi
2745
2746	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2747
2748	else
2749
2750	cp $executable ${TEMPDIR}/a.out
2751
2752	fi
2753
2754
2755	# WECHSEL IN TEMPORAEREN KATALOG
2756	cd $TEMPDIR
2757	printf "\n *** changed to temporary directory: $TEMPDIR"
2758
2759
2760	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2761	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2762	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2763	# ERMITTELN
2764	(( i = 0 ))
2765	while (( i < iout ))
2766	do
2767	(( i = i + 1 ))
2768	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2769	then
2770	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2771	else
2772	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2773	fi
2774	done
2775
2776
2777	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2778	if [[ $do_compile = true ]]
2779	then
2780
2781
2782	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2783	printf "\n\n\n *** compilation starts \n$striche\n"
2784	printf " *** compilation with make using following options:\n"
2785	printf " make depository: $make_depository"
2786	if [[ "$mopts" != "" ]]
2787	then
2788	printf " make options: $mopts\n"
2789	fi
2790	printf " compilername: $compiler_name\n"
2791	printf " compiler options: $fopts\n"
2792	printf " preprocessor directives: $cpp_options \n"
2793	printf " linker options: $lopts \n"
2794	if [[ "$modules" != "" ]]
2795	then
2796	printf " modules to be load: $modules \n"
2797	fi
2798	printf " source code files: $source_list \n"
2799
2800	if [[ $localhost = nech ]]
2801	then
2802	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2803	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2804	cp $TEMPDIR_COMPILE/a.out .
2805	[[ $? != 0 ]] && compile_error=true
2806	rm -rf $TEMPDIR_COMPILE
2807	elif [[ $localhost = ibmh ]]
2808	then
2809	printf " compiler is called via ssh on \"plogin1\" \n"
2810	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2811	[[ ! -f a.out ]] && compile_error=true
2812	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2813	elif [[ $localhost = lcsgib ]]
2814	then
2815	printf " compiler is called via ssh on \"bicegate0\" \n"
2816	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2817	[[ ! -f a.out ]] && compile_error=true
2818	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2819	elif [[ $localhost = lcsgih ]]
2820	then
2821	printf " compiler is called via ssh on \"hicegate0\" \n"
2822	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2823	[[ ! -f a.out ]] && compile_error=true
2824	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2825	elif [[ $localhost = lcflow ]]
2826	then
2827	printf " compiler is called via ssh on \"flow\" \n"
2828	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2829	[[ ! -f a.out ]] && compile_error=true
2830	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2831	else
2832	[[ "$init_cmds" != "" ]] && eval $init_cmds
2833	[[ "$module_calls" != "" ]] && eval $module_calls
2834	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2835
2836	fi
2837
2838	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2839	then
2840	printf "\n +++ error occured while compiling or linking"
2841	locat=compile
2842
2843	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2844	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2845	# then
2846	exit
2847	# else
2848	# locat=normal
2849	# fi
2850	else
2851	printf "$striche\n *** compilation finished \n"
2852	fi
2853	fi
2854
2855
2856	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2857	if [[ $local_compile = true ]]
2858	then
2859	cd $HOME
2860	rm -rf $TEMPDIR
2861	locat=local_compile; exit
2862	fi
2863
2864
2865	# BEREITSTELLEN DER INPUT-DATEIEN
2866	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2867	(( i = 0 ))
2868	while (( i < iin ))
2869	do
2870	(( i = i + 1 ))
2871	if (( i == 1 ))
2872	then
2873	printf "\n\n *** providing INPUT-files:\n$striche"
2874	fi
2875
2876
2877	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2878	if [[ "${transin[$i]}" = unavailable ]]
2879	then
2880	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2881	then
2882	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2883	printf "\n is not available!"
2884	else
2885	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2886	printf "\n is not available!"
2887	fi
2888	continue
2889	fi
2890
2891	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2892	files_for_pes=false; datentyp=file
2893	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2894	then
2895	files_for_pes=true; datentyp=directory
2896	actionin[$i]=""
2897	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2898	then
2899	actionin[$i]=""
2900	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2901	then
2902	files_for_pes=true; datentyp=directory
2903	actionin[$i]="ar"
2904	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2905	then
2906	actionin[$i]="ar"
2907	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2908	then
2909	files_for_pes=true; datentyp=directory
2910	actionin[$i]="fl"
2911	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2912	then
2913	actionin[$i]="fl"
2914	fi
2915
2916	if [[ $files_for_pes = true ]]
2917	then
2918	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2919	else
2920	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2921	fi
2922
2923	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2924	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2925	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2926	# SERVER ZU HOLEN
2927	if [[ "${actionin[$i]}" = fl ]]
2928	then
2929	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2930	if [[ $files_for_pes = false ]]
2931	then
2932	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2933	then
2934	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2935	got_tmp[$i]=true
2936	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2937	then
2938	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2939	printf "\n *** trying to use backup copy in \"$WORK\" "
2940	cp $WORK/${frelin[$i]} ${localin[$i]}
2941	else
2942	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2943	printf "\n or \"$tmp_data_catalog\" does not exist!"
2944	printf "\n *** trying to get copy from archive"
2945	actionin[$i]=ar
2946	fi
2947	else
2948	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2949	then
2950	mkdir ${localin[$i]}
2951	cd $tmp_data_catalog/${frelin[$i]}
2952	for file in $(ls *)
2953	do
2954	ln $file $TEMPDIR/${localin[$i]}
2955	done
2956	cd $TEMPDIR
2957	got_tmp[$i]=true
2958	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2959	then
2960	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2961	printf "\n *** trying to use backup copy in \"$WORK\" "
2962	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2963	else
2964	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2965	printf "\n or \"$tmp_data_catalog\" does not exist!"
2966	printf "\n *** trying to get copy from archive"
2967	actionin[$i]=ar
2968	fi
2969	fi
2970	fi
2971
2972
2973	# DATEI LIEGT AUF ARCHIV-SERVER
2974	if [[ "${actionin[$i]}" = ar ]]
2975	then
2976
2977	if [[ $files_for_pes = false ]]
2978	then
2979	printf "\n file will be restored from archive-system ($archive_system)!"
2980	else
2981	printf "\n directory will be restored from archive-system ($archive_system)!"
2982	fi
2983
2984	file_restored=false
2985
2986	if [[ $archive_system = asterix ]]
2987	then
2988	do_stagein=true
2989	(( stagein_anz = 0 ))
2990	while [[ $do_stagein = true ]]
2991	do
2992	if [[ $files_for_pes = false ]]
2993	then
2994	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2995	else
2996	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2997	fi
2998	cat STAGEIN_OUTPUT
2999	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3000	then
3001	file_restored=true
3002	do_stagein=false
3003	else
3004	(( stagein_anz = stagein_anz + 1 ))
3005	if (( stagein_anz == 10 ))
3006	then
3007	printf "\n +++ stagein stoped after 10 tries"
3008	locat=stage
3009	exit
3010	fi
3011	printf "\n +++ restoring from archive failed, trying again:"
3012	sleep 900
3013	fi
3014	done
3015	elif [[ $archive_system = DMF ]]
3016	then
3017	if [[ $files_for_pes = false ]]
3018	then
3019	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3020	locat=DMF
3021	exit
3022	else
3023	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3024	cp -r $ARCHIVE/${frelin[$i]} $PWD
3025	file_restored=true
3026	fi
3027	elif [[ $archive_system = tivoli ]]
3028	then
3029	if [[ $files_for_pes = false ]]
3030	then
3031	if [[ $localhost = lcsgih ]]
3032	then
3033	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3034	else
3035	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3036	fi
3037	else
3038	(( inode = 0 ))
3039	while (( inode < nodes ))
3040	do
3041	if [[ $localhost = lcsgih ]]
3042	then
3043	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3044	else
3045	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3046	fi
3047	(( inode = inode + 1 ))
3048	done
3049	fi
3050	file_restored=true
3051	elif [[ $archive_system = ut ]]
3052	then
3053	if [[ $files_for_pes = false ]]
3054	then
3055	cp $UT/${frelin[$i]} .
3056	else
3057	(( inode = 0 ))
3058	while (( inode < nodes ))
3059	do
3060	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3061	(( inode = inode + 1 ))
3062	done
3063	fi
3064	file_restored=true
3065	else
3066	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3067	locat=rearchive
3068	exit
3069	fi
3070
3071	if [[ $file_restored = true ]]
3072	then
3073
3074	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3075	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3076	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3077	if [[ $files_for_pes = false ]]
3078	then
3079	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3080	else
3081	mkdir $tmp_data_catalog/${frelin[$i]}
3082	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3083	fi
3084	got_tmp[$i]=true
3085
3086	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3087	mv ${frelin[$i]} ${localin[$i]}
3088
3089	fi
3090	fi
3091
3092
3093	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3094	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3095	then
3096
3097	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3098	then
3099
3100	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3101	printf "\n file will be provided for $numprocs processors"
3102	mkdir ${localin[$i]}
3103	ival=$numprocs
3104	(( ii = 0 ))
3105	while (( ii <= ival-1 ))
3106	do
3107	if (( ii < 10 ))
3108	then
3109	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3110	elif (( ii < 100 ))
3111	then
3112	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3113	elif (( ii < 1000 ))
3114	then
3115	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3116	else
3117	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3118	fi
3119	(( ii = ii + 1 ))
3120	done
3121
3122	else
3123
3124	if [[ $files_for_pes = true ]]
3125	then
3126
3127	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3128	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3129	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3130	# PER MOVE UMBENANNT WERDEN
3131	printf "\n providing $numprocs files for the respective processors"
3132	mkdir ${localin[$i]}
3133	if [[ $link_local_input = true ]]
3134	then
3135	printf " using ln -f\n"
3136	cd ${absnamein[$i]}
3137	for file in $(ls *)
3138	do
3139	ln -f $file ${localin[$i]}
3140	done
3141	cd $TEMPDIR
3142	fi
3143	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3144	if [[ ! -f "${localin[$i]}/_0000" ]]
3145	then
3146	if [[ $link_local_input = true ]]
3147	then
3148	printf " ln failed for .../_0000, using cp...\n"
3149	fi
3150	cp -r ${absnamein[$i]}/* ${localin[$i]}
3151	fi
3152
3153	else
3154	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3155	if [[ $link_local_input = true ]]
3156	then
3157	printf " using ln -f\n"
3158	ln -f ${absnamein[$i]} ${localin[$i]}
3159	fi
3160	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3161	if [[ ! -f "${localin[$i]}" ]]
3162	then
3163	if [[ $link_local_input = true ]]
3164	then
3165	printf " ln failed, using cp...\n"
3166	fi
3167	cp ${absnamein[$i]} ${localin[$i]}
3168	fi
3169	fi
3170	fi
3171	fi
3172
3173	done
3174	if (( i != 0 ))
3175	then
3176	printf "\n$striche\n *** all INPUT-files provided \n"
3177	fi
3178
3179
3180	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3181	(( i = 0 ))
3182	while (( i < iic ))
3183	do
3184	(( i = i + 1 ))
3185	if (( i == 1 ))
3186	then
3187	printf "\n\n *** execution of INPUT-commands:\n$striche"
3188	fi
3189	printf "\n >>> ${in_command[$i]}"
3190	eval ${in_command[$i]}
3191	if (( i == iic ))
3192	then
3193	printf "\n$striche\n"
3194	fi
3195	done
3196
3197
3198	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3199	cpurest=${cpumax}.
3200
3201
3202	# START DVR STREAMING SERVER
3203	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3204	then
3205	if [[ "$dvr_server" != "" ]]
3206	then
3207
3208	printf "\n\n *** preparing the dvr streaming server configuration file"
3209
3210	# Check, if a dvr server is already running
3211	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3212	if [[ "$running_dvrserver_id" != "" ]]
3213	then
3214
3215	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3216	printf "\n This server is used instead starting a new one!"
3217	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3218
3219	else
3220
3221	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3222	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3223	then
3224	cp ${PALM_BIN}/.dvrserver.config .
3225
3226	# Entering the BASEDIR, UID and GID into this file
3227	user_id=`id -u`
3228	group_id=`id -g`
3229	# & is needed as seperator, because TEMPDIR contains /
3230	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3231	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3232	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3233	mv .dvrserver.3 .dvrserver.config
3234	rm .dvrserver.1 .dvrserver.2
3235
3236	# Start dvr server in background, get his id and print on terminal
3237	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3238	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3239	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3240	local_dvrserver_running=.TRUE.
3241	else
3242	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3243	printf "\n \"$PALM_BIN\" "
3244	locat=dvr
3245	exit
3246	fi
3247
3248	fi
3249
3250	else
3251	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3252	fi
3253	fi
3254
3255
3256	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3257	# LESEN VON PALM)
3258	cat > ENVPAR << %%END%%
3259	&envpar run_identifier = '$fname', host = '$localhost',
3260	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3261	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3262	maximum_cpu_time_allowed = ${cpumax}.,
3263	revision = '$global_revision',
3264	local_dvrserver_running = $local_dvrserver_running /
3265
3266	%%END%%
3267
3268
3269	# PROGRAMMSTART
3270	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3271	PATH=$PATH:$TEMPDIR
3272
3273	# MPI debug option (argument checking, slows down execution due to increased latency)
3274	if [[ "$mpi_debug" = true ]]
3275	then
3276	export MPI_CHECK_ARGS=1
3277	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3278	fi
3279
3280	if [[ "$totalview" = true ]]
3281	then
3282	printf "\n *** totalview debugger will be used"
3283	tv_opt="-tv"
3284	else
3285	tv_opt=""
3286	fi
3287
3288	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3289	then
3290	if [[ "$ENVIRONMENT" = BATCH ]]
3291	then
3292	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3293	then
3294	printf "\n +++ debug is allowed in interactive mode only"
3295	locat=debug
3296	exit
3297	fi
3298	fi
3299	if [[ $localhost = ibmh ]]
3300	then
3301
3302	# SETUP THE IBM MPI ENVIRONMENT
3303	export MP_SHARED_MEMORY=yes
3304	export AIXTHREADS_SCOPE=S
3305	export OMP_NUM_THREADS=$threads_per_task
3306	export AUTHSTATE=files
3307	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3308
3309	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3310	export MP_ADAPTER_USE=shared
3311	export MP_CPU_USE=multiple
3312	export MP_TIMEOUT=1200
3313
3314	unset MP_TASK_AFFINITY
3315
3316	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3317	#(( ii = 1 ))
3318	#while (( ii <= $numprocs ))
3319	#do
3320	# echo $localhost_realname >> hostfile
3321	# (( ii = ii + 1 ))
3322	#done
3323	#export MP_HOSTFILE=hostfile
3324
3325	if [[ "$LOADLBATCH" = yes ]]
3326	then
3327	totalview poe a.out $ROPTS
3328	else
3329	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3330	export TVDSVRLAUNCHCMD=ssh
3331	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3332	fi
3333	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3334	then
3335	# CURRENTLY NO DEBUGGER ON LCSGI
3336	if [[ $run_coupled_model = true ]]
3337	then
3338	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3339	locat=debug
3340	exit
3341	else
3342	echo "no_coupling" > runfile_atmos
3343	fi
3344	(( ii = $numprocs / $threads_per_task ))
3345	export OMP_NUM_THREADS=$threads_per_task
3346	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3347	if [[ $threads_per_task != 1 ]]
3348	then
3349	printf "\n threads per task: $threads_per_task"
3350	fi
3351	printf "\n\n"
3352	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3353	then
3354	# export MPI_LAUNCH_TIMEOUT=360
3355	if [[ "$totalview" = true ]]
3356	then
3357	printf "\n running totalview debugger"
3358	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3359	else
3360	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3361	fi
3362	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3363	then
3364	# ulimit -s 300000 # A too large stack size causes problems
3365	# export MV2_NUM_PORTS=2
3366	# export MV2_CPU_MAPPING=0:1:2:3
3367	if [[ "$totalview" = true ]]
3368	then
3369	printf "\n running totalview debugger"
3370	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3371	else
3372	mpiexec ./a.out $ROPTS < runfile_atmos
3373	fi
3374	fi
3375	else
3376	printf "\n +++ no debug available on \"$localhost\" "
3377	printf "\n or not implemented in mrun so far"
3378	locat=debug
3379	exit
3380	fi
3381
3382	# end debug mode
3383	else
3384
3385	# normal execution
3386	if [[ -n $numprocs ]]
3387	then
3388	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3389	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3390	then
3391	# SETUP THE IBM MPI ENVIRONMENT
3392	if [[ $host != ibmh && $host != ibmkisti ]]
3393	then
3394	export MP_SHARED_MEMORY=yes
3395	export AIXTHREAD_SCOPE=S
3396	export OMP_NUM_THREADS=$threads_per_task
3397	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3398	export AUTHSTATE=files
3399	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3400	# export MP_PRINTENV=yes
3401
3402	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3403	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3404	export MP_WAIT_MODE=poll
3405	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3406	fi
3407
3408	if [[ $host = ibmkisti ]]
3409	then
3410	export LANG=en_US
3411	export MP_SHARED_MEMORY=yes
3412	if [[ $threads_per_task = 1 ]]
3413	then
3414	export MP_SINGLE_THREAD=yes
3415	export MEMORY_AFFINITY=MCM
3416	else
3417	export OMP_NUM_THREADS=$threads_per_task
3418	fi
3419	fi
3420
3421	if [[ "$LOADLBATCH" = yes ]]
3422	then
3423	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3424	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3425	then
3426	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3427	else
3428	if [[ $run_coupled_model = false ]]
3429	then
3430	if [[ "$ocean_file_appendix" = true ]]
3431	then
3432	echo "precursor_ocean" > runfile_atmos
3433	else
3434	echo "precursor_atmos" > runfile_atmos
3435	fi
3436	else
3437	(( iia = $numprocs_atmos / $threads_per_task ))
3438	(( iio = $numprocs_ocean / $threads_per_task ))
3439	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3440	printf "\n using $coupled_mode coupling"
3441	printf "\n\n"
3442	echo "coupled_run $iia $iio" > runfile_atmos
3443	fi
3444	poe ./a.out $ROPTS < runfile_atmos
3445	fi
3446	else
3447	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3448	then
3449	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3450	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3451	then
3452	if [[ -f $hostfile ]]
3453	then
3454	cp $hostfile hostfile
3455	else
3456	(( ii = 1 ))
3457	while (( ii <= $numprocs ))
3458	do
3459	echo $localhost_realname >> hostfile
3460	(( ii = ii + 1 ))
3461	done
3462	fi
3463	export MP_HOSTFILE=hostfile
3464	if [[ $run_coupled_model = false ]]
3465	then
3466	if [[ "$ocean_file_appendix" = true ]]
3467	then
3468	echo "precursor_ocean" > runfile_atmos
3469	else
3470	echo "precursor_atmos" > runfile_atmos
3471	fi
3472	else
3473	(( iia = $numprocs_atmos / $threads_per_task ))
3474	(( iio = $numprocs_ocean / $threads_per_task ))
3475	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3476	printf "\n using $coupled_mode coupling"
3477	printf "\n\n"
3478	echo "coupled_run $iia $iio" > runfile_atmos
3479	fi
3480	if [[ $localhost = ibmy ]]
3481	then
3482	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3483	else
3484	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3485	fi
3486
3487	else
3488	if [[ "$host_file" = "" ]]
3489	then
3490	printf "\n +++ no hostfile given in configuration file"
3491	locat=config_file
3492	exit
3493	else
3494	eval host_file=$host_file
3495	fi
3496	export MP_HOSTFILE=$host_file
3497	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3498	fi
3499	fi
3500	elif [[ $host = nech \|\| $host = necriam ]]
3501	then
3502	(( ii = nodes ))
3503	if [[ $ii = 1 ]]
3504	then
3505	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3506	export MPIPROGINF=YES
3507	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3508	echo "*** execution on single node with mpirun"
3509	mpirun -np $numprocs ./a.out $ROPTS
3510	else
3511	(( i = 0 ))
3512	while (( i < ii ))
3513	do
3514	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3515	(( i = i + 1 ))
3516	done
3517
3518	echo "#!/bin/sh" > mpi_exec_shell
3519	echo " " >> mpi_exec_shell
3520	echo "set -u" >> mpi_exec_shell
3521	echo "F_ERRCNT=0" >> mpi_exec_shell
3522	echo "MPIPROGINV=YES" >> mpi_exec_shell
3523	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3524	echo "cpurest=$cpurest" >> mpi_exec_shell
3525	echo "fname=$fname" >> mpi_exec_shell
3526	echo "localhost=$localhost" >> mpi_exec_shell
3527	echo "return_addres=$return_addres" >> mpi_exec_shell
3528	echo "return_username=$return_username" >> mpi_exec_shell
3529	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3530	echo "write_binary=$write_binary" >> mpi_exec_shell
3531	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3532	echo " " >> mpi_exec_shell
3533	echo "export F_ERRCNT" >> mpi_exec_shell
3534	echo "export MPIPROGINV" >> mpi_exec_shell
3535	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3536	echo "export cpurest" >> mpi_exec_shell
3537	echo "export fname" >> mpi_exec_shell
3538	echo "export localhost" >> mpi_exec_shell
3539	echo "export return_addres" >> mpi_exec_shell
3540	echo "export return_username" >> mpi_exec_shell
3541	echo "export tasks_per_node" >> mpi_exec_shell
3542	echo "export write_binary" >> mpi_exec_shell
3543	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3544	echo " " >> mpi_exec_shell
3545	echo "exec ./a.out" >> mpi_exec_shell
3546
3547	chmod u+x mpi_exec_shell
3548	export MPIPROGINF=YES
3549	mpirun -f multinode_config &
3550	wait
3551
3552	fi
3553	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3554	then
3555
3556	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3557	# DOES NOT EXIST
3558	if [[ $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3559	then
3560	if [[ -f $hostfile ]]
3561	then
3562	cp $hostfile hostfile
3563	(( ii = $numprocs / $threads_per_task ))
3564	else
3565	(( ii = 1 ))
3566	while (( ii <= $numprocs / $threads_per_task ))
3567	do
3568	echo $localhost_realname >> hostfile
3569	(( ii = ii + 1 ))
3570	done
3571	fi
3572	eval zeile=\"`head -n $ii hostfile`\"
3573	printf "\n *** running on: $zeile"
3574	fi
3575
3576	(( ii = $numprocs / $threads_per_task ))
3577	export OMP_NUM_THREADS=$threads_per_task
3578	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3579	if [[ $threads_per_task != 1 ]]
3580	then
3581	# increase stack size to unlimited, because large runs
3582	# may abort otherwise
3583	ulimit -Ss unlimited
3584	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3585	fi
3586	if [[ $run_coupled_model = false ]]
3587	then
3588	if [[ "$ocean_file_appendix" = true ]]
3589	then
3590	echo "precursor_ocean" > runfile_atmos
3591	else
3592	echo "precursor_atmos" > runfile_atmos
3593	fi
3594	printf "\n\n"
3595	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3596	then
3597	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3598	then
3599	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3600	# export MPI_DSM_DISTRIBUTE=1
3601	# MPI_DSM_CPULIST: pin MPI processes to cores
3602	if [[ $use_openmp = false ]]
3603	then
3604	if [[ "$sgi_feature" = ice2 ]]
3605	then
3606	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3607	else
3608	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3609	fi
3610	else
3611	unset MPI_DSM_CPULIST
3612	fi
3613	# MPI_IB_RAILS: use both IB rails on ICE2
3614	export MPI_BUFS_PER_HOST=512
3615	export MPI_IB_RAILS=2
3616	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3617	export MPI_CONNECTIONS_THRESHOLD=8192
3618	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3619	export MPI_TYPE_DEPTH=20
3620	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3621	export MPI_GROUP_MAX=64
3622	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3623	if [[ $use_openmp = true ]]
3624	then
3625	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3626	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3627	else
3628	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3629	fi
3630
3631	# next is test for openmp usage
3632	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3633	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3634	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3635	then
3636	export MV2_NUM_PORTS=2
3637	# The default setting of MV2_CPU_MAPPING gives best results
3638	# export MV2_ENABLE_AFFINITY=1
3639	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3640	# if [[ "$sgi_feature" = ice2 ]]
3641	# then
3642	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3643	# else
3644	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3645	# fi
3646	if [[ $use_openmp = true ]]
3647	then
3648	unset MV2_CPU_MAPPING
3649	export MV2_ENABLE_AFFINITY=0
3650	fi
3651	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3652	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3653	if [[ $use_openmp = true ]]
3654	then
3655	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3656	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3657	else
3658	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3659	fi
3660	elif [[ "$mpilib" = impi ]]
3661	then
3662	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3663	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3664	fi
3665	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3666	then
3667	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3668	elif [[ $host = lcflow ]]
3669	then
3670	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3671	elif [[ $host = lcsb ]]
3672	then
3673	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3674	elif [[ $host = lckiaps ]]
3675	then
3676	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3677	elif [[ $host = lckyu* ]]
3678	then
3679	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3680	else
3681	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3682	fi
3683	else
3684
3685	# currently there is no full MPI-2 support on ICE and XT4
3686	(( iia = $numprocs_atmos / $threads_per_task ))
3687	(( iio = $numprocs_ocean / $threads_per_task ))
3688	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3689	printf "\n using $coupled_mode coupling"
3690	printf "\n\n"
3691
3692	if [[ $coupled_mode = "mpi2" ]]
3693	then
3694	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3695	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3696	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3697	then
3698
3699	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3700	then
3701	# export MPI_LAUNCH_TIMEOUT=360
3702	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3703	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3704	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3705	then
3706	# ulimit -s 300000 # A too large stack size causes problems
3707	# export MV2_NUM_PORTS=2
3708	# export MV2_CPU_MAPPING=0:1:2:3
3709	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3710	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3711	fi
3712
3713	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3714	then
3715
3716	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3717	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3718
3719	else
3720	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3721	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3722	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3723	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3724	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3725	fi
3726	wait
3727
3728	else
3729
3730	echo "coupled_run $iia $iio" > runfile_atmos
3731	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3732	then
3733
3734	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3735	then
3736	# export MPI_LAUNCH_TIMEOUT=360
3737	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3738	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3739	then
3740	# ulimit -s 300000 # A too large stack size causes problems
3741	# export MV2_NUM_PORTS=2
3742	# export MV2_CPU_MAPPING=0:1:2:3
3743	mpiexec ./a.out $ROPTS < runfile_atmos
3744	fi
3745
3746	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3747	then
3748
3749	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3750
3751	elif [[ $host = lck \|\| $host = lckordi ]]
3752	then
3753
3754	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3755
3756	elif [[ $host = lckyu* ]]
3757	then
3758
3759	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3760
3761	fi
3762	wait
3763	fi
3764
3765	fi
3766	elif [[ $host = lckyoto ]]
3767	then
3768	set -xv
3769	export P4_RSHCOMMAND=plesh
3770	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3771	if [[ "$ENVIRONMENT" = BATCH ]]
3772	then
3773	if [[ "$cond2" = fujitsu ]]
3774	then
3775	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3776	elif [[ "cond2" = pgi ]]
3777	then
3778	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3779	else
3780	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3781	fi
3782	else
3783	if [[ "$cond2" = "" ]]
3784	then
3785	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3786	else
3787	mpirun -np $numprocs ./a.out $ROPTS
3788	fi
3789	fi
3790	set +xv
3791	elif [[ $host = lctit ]]
3792	then
3793	export OMP_NUM_THREADS=$threads_per_task
3794	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3795	if [[ "$threads_per_task" != 1 ]]
3796	then
3797	export MV2_ENABLE_AFFINITY=0
3798	fi
3799	echo "----- PBS_NODEFILE content:"
3800	cat $PBS_NODEFILE
3801	echo "-----"
3802	(( ii = $numprocs / $threads_per_task ))
3803	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3804	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3805	else
3806	mpprun -n $numprocs a.out $ROPTS
3807	fi
3808	[[ $? != 0 ]] && execution_error=true
3809
3810
3811	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3812	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3813	then
3814	apprentice
3815	fi
3816	else
3817	a.out $ROPTS
3818	fi
3819	fi
3820	if [[ $? != 0 \|\| $execution_error = true ]]
3821	then
3822
3823	# ABBRUCH BEI LAUFZEITFEHLER
3824	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3825	printf "\n +++ runtime error occured"
3826	locat=execution
3827	exit
3828	else
3829	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3830	printf "\n$striche\n *** execution finished \n"
3831
3832	# Stop the dvr streaming server and process the dvr output in order
3833	# to create dvrs- and html-files containing all streams
3834	if [[ "$dvrserver_id" != "" ]]
3835	then
3836	kill $dvrserver_id
3837	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3838
3839	# If there is a directory, data have been output by the
3840	# streaming server. Otherwise, user has chosen dvrp_output=local
3841	if [[ -d DATA_DVR ]]
3842	then
3843
3844	# Add the current dvr configuration file to the dvr output
3845	# directory
3846	cp .dvrserver.config DATA_DVR
3847
3848	# Process the dvr output (option -s for also generating
3849	# sequence mode data)
3850	process_dvr_output -d DATA_DVR -f $fname -s
3851
3852	else
3853
3854	# Process the local output
3855	process_dvr_output -l -d DATA_DVR -f $fname
3856
3857	fi
3858
3859	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3860	then
3861
3862	# Process dvr output generated in local mode (dvrp_output=local)
3863	process_dvr_output -l -d DATA_DVR -f $fname
3864
3865	fi
3866	fi
3867
3868
3869
3870	# Call of combine_plot_fields in order to merge single files written
3871	# by each PE into one file.
3872	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3873	then
3874	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3875	printf "\n 2d- and/or 3d-data may be incomplete!"
3876	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3877	elif [[ "$combine_plot_fields" == true ]]
3878	then
3879	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3880	combine_plot_fields${block}.x
3881	else
3882	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3883	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3884	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3885	fi
3886
3887
3888
3889	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3890	(( i = 0 ))
3891	while (( i < ioc ))
3892	do
3893	(( i = i + 1 ))
3894	if (( i == 1 ))
3895	then
3896	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3897	fi
3898	printf "\n >>> ${out_command[$i]}"
3899	eval ${out_command[$i]}
3900	if (( i == ioc ))
3901	then
3902	printf "\n$striche\n"
3903	fi
3904	done
3905
3906
3907	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3908	if [[ $do_trace = true ]]
3909	then
3910	printf "\n\n"
3911	ls -al
3912	fi
3913
3914
3915
3916	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3917	(( i = 0 ))
3918	while (( i < iout ))
3919	do
3920	(( i = i + 1 ))
3921	if (( i == 1 ))
3922	then
3923	printf "\n\n *** saving OUTPUT-files:\n$striche"
3924	fi
3925
3926	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3927	files_for_pes=false; filetyp=file
3928	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3929	then
3930	files_for_pes=true; filetyp=directory
3931	actionout[$i]=""
3932	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3933	then
3934	actionout[$i]=""
3935	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3936	then
3937	files_for_pes=true; filetyp=directory
3938	actionout[$i]="ar"
3939	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3940	then
3941	actionout[$i]="ar"
3942	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3943	then
3944	files_for_pes=true; filetyp=directory
3945	actionout[$i]="fl"
3946	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3947	then
3948	actionout[$i]="fl"
3949	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3950	then
3951	files_for_pes=true; filetyp=directory
3952	actionout[$i]="tr"
3953	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3954	then
3955	actionout[$i]="tr"
3956	fi
3957
3958	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3959	then
3960	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3961	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3962	then
3963	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3964	else
3965
3966
3967	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3968	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3969	# REMOTE-RECHNUNGEN
3970	if [[ "${actionout[$i]}" = tr ]]
3971	then
3972	if [[ $localhost != $fromhost ]]
3973	then
3974	if [[ $files_for_pes = false ]]
3975	then
3976	cps=""
3977	cst=""
3978	else
3979	cps=-c
3980	cst="/"
3981	fi
3982	if [[ $localhost = nech ]]
3983	then
3984
3985	# TRANSFER IN EIGENSTAENDIGEM JOB
3986	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3987	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3988	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3989	if [[ $files_for_pes = false ]]
3990	then
3991	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3992	else
3993	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3994	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3995	fi
3996
3997	echo "set -x" > transfer_${localout[$i]}
3998	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3999
4000	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4001	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4002	printf "\n or higher cycle\n"
4003	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4004
4005	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4006
4007	if [[ $localhost = nech ]]
4008	then
4009	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4010	else
4011	if [[ "$LOGNAME" = b323013 ]]
4012	then
4013	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4014	else
4015	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4016	fi
4017	fi
4018
4019	else
4020
4021	# TRANSFER INNERHALB DIESES JOBS
4022	transfer_failed=false
4023	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4024	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4025	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4026	[[ $? != 0 ]] && transfer_failed=true
4027
4028	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4029	# LOKALER MASCHINE ANLEGEN
4030	if [[ $transfer_failed = true ]]
4031	then
4032	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4033	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4034
4035	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4036	# ANLEGEN.
4037	eval local_catalog=${pathout[$i]}
4038	if [[ ! -d $local_catalog ]]
4039	then
4040	printf " *** local directory does not exist. Trying to create:\n"
4041	printf " $local_catalog \n"
4042	mkdir -p $local_catalog
4043	fi
4044	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4045	transfer_problems=true
4046	fi
4047	fi
4048	else
4049
4050	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4051	actionout[$i]=""
4052	fi
4053	fi
4054
4055
4056	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4057	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4058	# REMOTE-RECHNUNGEN
4059	if [[ "${actionout[$i]}" = tra ]]
4060	then
4061	if [[ $localhost != $fromhost ]]
4062	then
4063	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4064	then
4065
4066	# TRANSFER IN EIGENSTAENDIGEM JOB
4067	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4068	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4069	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4070	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4071
4072	echo "set -x" > transfer_${localout[$i]}
4073	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4074
4075	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4076	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4077	printf "\n or higher cycle\n"
4078	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4079
4080	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4081
4082	if [[ $localhost = nech ]]
4083	then
4084	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4085	else
4086	if [[ $LOGNAME = b323013 ]]
4087	then
4088	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4089	else
4090	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4091	fi
4092	fi
4093
4094	else
4095
4096	# TRANSFER INNERHALB DIESES JOBS
4097	transfer_failed=false
4098	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4099	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4100	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4101	[[ $? != 0 ]] && transfer_failed=true
4102
4103	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4104	# LOKALER MASCHINE ANLEGEN
4105	if [[ $transfer_failed = true ]]
4106	then
4107	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4108	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4109
4110	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4111	# ANLEGEN
4112	eval local_catalog=${pathout[$i]}
4113	if [[ ! -d $local_catalog ]]
4114	then
4115	printf " *** local directory does not exist. Trying to create:\n"
4116	printf " $local_catalog \n"
4117	mkdir -p $local_catalog
4118	fi
4119
4120	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4121	transfer_problems=true
4122	fi
4123	fi
4124	else
4125
4126	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4127	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4128	actionout[$i]=a
4129	fi
4130	fi
4131
4132
4133	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4134	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4135	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4136	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4137	if [[ "${actionout[$i]}" = fl ]]
4138	then
4139	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4140	chmod g+rx $tmp_data_catalog
4141	if [[ $files_for_pes = false ]]
4142	then
4143	printf "\n >>> OUTPUT: ${localout[$i]} to"
4144	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4145	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4146	else
4147	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4148	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4149	mkdir $tmp_data_catalog/${frelout[$i]}
4150	cd ${localout[$i]}
4151	for file in $(ls *)
4152	do
4153	ln -f $file $tmp_data_catalog/${frelout[$i]}
4154	done
4155	cd $TEMPDIR
4156	fi
4157
4158
4159	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4160	if [[ $store_on_archive_system = true ]]
4161	then
4162
4163	if [[ $archive_system = asterix ]]
4164	then
4165	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4166	if [[ $files_for_pes = false ]]
4167	then
4168	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4169	else
4170	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4171	fi
4172	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4173	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4174	echo "then" >> archive_${frelout[$i]}
4175	echo " do_stageout=false" >> archive_${frelout[$i]}
4176	echo "else" >> archive_${frelout[$i]}
4177	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4178	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4179	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4180	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4181	if [[ $files_for_pes = false ]]
4182	then
4183	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4184	else
4185	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4186	fi
4187	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4188	echo "fi" >> archive_${frelout[$i]}
4189	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4190	elif [[ $archive_system = DMF ]]
4191	then
4192	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4193	if [[ $files_for_pes = false ]]
4194	then
4195	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4196	locat=DMF
4197	exit
4198	else
4199	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4200	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4201	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4202	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4203	fi
4204	elif [[ $archive_system = tivoli ]]
4205	then
4206	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4207	if [[ $files_for_pes = false ]]
4208	then
4209	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4210	echo "set -x" >> archive_${frelout[$i]}
4211	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4212	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4213	else
4214
4215	echo "set -x" >> archive_${frelout[$i]}
4216	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4217	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4218	cd $tmp_data_catalog
4219	all_files=`ls -1 ${frelout[$i]}/*`
4220	cd - > /dev/null
4221	(( inode = 0 ))
4222	(( tp1 = tasks_per_node + 1 ))
4223	while (( inode < nodes ))
4224	do
4225	# echo "*** all_files = \"$all_files\" "
4226	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4227	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4228	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4229	# echo "*** files = \"$files\" "
4230	# echo "*** all_files = \"$all_files\" "
4231	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4232	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4233	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4234	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4235	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4236	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4237	(( inode = inode + 1 ))
4238	done
4239	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4240	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4241	fi
4242	elif [[ $archive_system = ut ]]
4243	then
4244	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4245	if [[ $files_for_pes = false ]]
4246	then
4247	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4248	echo "set -x" >> archive_${frelout[$i]}
4249	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4250	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4251	else
4252
4253	echo "set -x" >> archive_${frelout[$i]}
4254	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4255	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4256	cd $tmp_data_catalog
4257	all_files=`ls -1 ${frelout[$i]}/*`
4258	cd - > /dev/null
4259	(( inode = 0 ))
4260	(( tp1 = tasks_per_node + 1 ))
4261	while (( inode < nodes ))
4262	do
4263	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4264	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4265	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4266	(( inode = inode + 1 ))
4267	done
4268	fi
4269	elif [[ $archive_system = none ]]
4270	then
4271	printf " +++ archiving on $localhost not available!\n"
4272	fi
4273
4274	if [[ $archive_system != none ]]
4275	then
4276	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4277	then
4278	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4279	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4280	elif [[ $localhost = nech ]]
4281	then
4282	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4283	fi
4284	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4285	fi
4286	else
4287	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4288	fi
4289
4290
4291	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4292	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4293	if [[ $files_for_pes = false ]]
4294	then
4295	cat /dev/null > ${pathout[$i]}
4296	else
4297	mkdir -p ${pathout[$i]}
4298	fi
4299
4300	fi
4301
4302
4303	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4304	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4305	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4306	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4307	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4308	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4309	if [[ "${actionout[$i]}" = ar ]]
4310	then
4311	if [[ $files_for_pes = false ]]
4312	then
4313	printf "\n >>> OUTPUT: ${localout[$i]} to"
4314	printf "\n ${pathout[$i]}"
4315	printf "\n File will be copied to archive-system ($archive_system) !\n"
4316	else
4317	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4318	printf "\n ${pathout[$i]}"
4319	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4320	fi
4321	mv ${localout[$i]} ${frelout[$i]}
4322
4323	file_saved=false
4324
4325	if [[ $archive_system = asterix ]]
4326	then
4327	do_stageout=true
4328	(( stageout_anz = 0 ))
4329	while [[ $do_stageout = true ]]
4330	do
4331	if [[ $files_for_pes = false ]]
4332	then
4333	stageout ${frelout[$i]} > STAGE_OUTPUT
4334	else
4335	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4336	fi
4337	cat STAGE_OUTPUT
4338	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4339	then
4340	file_saved=true
4341	do_stageout=false
4342	else
4343	if [[ $files_for_pes = false ]]
4344	then
4345	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4346	else
4347	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4348	fi
4349	(( stageout_anz = stageout_anz + 1 ))
4350	if (( stageout_anz == 10 ))
4351	then
4352	printf "\n +++ stoped after 10 unsuccessful tries!"
4353	archive_save=false
4354	do_stageout=false
4355	else
4356	printf "\n *** new try to store on archive after 15 min:"
4357	sleep 900
4358	fi
4359	fi
4360	done
4361	elif [[ $archive_system = DMF ]]
4362	then
4363	if [[ $files_for_pes = false ]]
4364	then
4365	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4366	locat=DMF
4367	exit
4368	else
4369	rm -rf $ARCHIVE/${frelout[$i]}
4370	cp -r ${frelout[$i]} $ARCHIVE
4371	fi
4372	file_saved=true
4373	elif [[ $archive_system = tivoli ]]
4374	then
4375	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4376	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4377	# GELEGT WERDEN
4378	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4379	chmod g+rx $tmp_data_catalog
4380	if [[ $files_for_pes = false ]]
4381	then
4382	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4383	else
4384	mkdir $tmp_data_catalog/${frelout[$i]}
4385	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4386	fi
4387
4388	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4389	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4390	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4391	if [[ $files_for_pes = false ]]
4392	then
4393	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4394	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4395	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4396	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4397	else
4398	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4399	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4400	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4401	fi
4402
4403	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4404	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4405	file_saved=true
4406
4407	elif [[ $archive_system = ut ]]
4408	then
4409	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4410	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4411	# GELEGT WERDEN
4412	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4413	chmod g+rx $tmp_data_catalog
4414	if [[ $files_for_pes = false ]]
4415	then
4416	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4417	else
4418	mkdir $tmp_data_catalog/${frelout[$i]}
4419	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4420	fi
4421
4422	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4423	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4424	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4425	if [[ $files_for_pes = false ]]
4426	then
4427	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4428	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4429	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4430	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4431	else
4432	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4433	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4434	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4435	fi
4436
4437	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4438	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4439	file_saved=true
4440
4441	else
4442	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4443	archive_save=false
4444	fi
4445	if [[ $file_saved = true ]]
4446	then
4447	if [[ $files_for_pes = false ]]
4448	then
4449	cat /dev/null > ${pathout[$i]}
4450	else
4451	mkdir -p ${pathout[$i]}
4452	fi
4453	fi
4454	fi
4455
4456	# APPEND AUF LOKALER MASCHINE
4457	if [[ "${actionout[$i]}" = "a" ]]
4458	then
4459	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4460	then
4461	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4462	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4463	else
4464	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4465	cat ${localout[$i]} >> ${pathout[$i]}
4466	fi
4467	fi
4468
4469	# KOPIEREN AUF LOKALER MASCHINE
4470	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4471	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4472	then
4473
4474	# KOPIEREN AUF EINPROZESSORMASCHINE
4475	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4476	then
4477	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4478	if [[ $link_local_output = true ]]
4479	then
4480	printf " using ln -f\n"
4481	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4482	fi
4483	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4484	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4485	then
4486	if [[ $link_local_output = true ]]
4487	then
4488	printf " ln failed, using cp...\n"
4489	fi
4490	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4491	fi
4492	else
4493	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4494	if [[ $link_local_output = true ]]
4495	then
4496	printf " using ln -f\n"
4497	ln -f ${localout[$i]} ${pathout[$i]}
4498	fi
4499	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4500	if [[ ! -f "${pathout[$i]}" ]]
4501	then
4502	if [[ $link_local_output = true ]]
4503	then
4504	printf " ln failed, using cp...\n"
4505	fi
4506	cp ${localout[$i]} ${pathout[$i]}
4507	fi
4508	fi
4509
4510	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4511	then
4512
4513	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4514	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4515	# WIRD DANN KOPIERT
4516	# PER MOVE UMBENANNT WERDEN
4517	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4518	if [[ $link_local_output = true ]]
4519	then
4520	printf " using ln -f\n"
4521	mkdir ${pathout[$i]}
4522	cd ${localout[$i]}
4523	for file in $(ls *)
4524	do
4525	ln -f $file ${pathout[$i]}
4526	done
4527	cd $TEMPDIR
4528	fi
4529	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4530	if [[ ! -f "${pathout[$i]}/_0000" ]]
4531	then
4532	if [[ $link_local_output = true ]]
4533	then
4534	printf " ln failed for .../_0000, using cp...\n"
4535	fi
4536	cp -r ${localout[$i]} ${pathout[$i]}
4537	fi
4538
4539	fi
4540	fi
4541	done
4542	if (( i != 0 ))
4543	then
4544	if [[ $transfer_problems = true ]]
4545	then
4546	printf "\n$striche\n *** OUTPUT-files saved"
4547	printf "\n +++ WARNING: some data transfers failed! \n"
4548	else
4549	printf "\n$striche\n *** all OUTPUT-files saved \n"
4550	fi
4551	fi
4552
4553
4554	# EVENTUELL FOLGEJOB STARTEN
4555	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4556	if [[ -f CONTINUE_RUN ]]
4557	then
4558
4559	if [[ $archive_save = true ]]
4560	then
4561
4562	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4563	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4564	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4565	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4566	# HANDEN
4567	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4568	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4569	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4570	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4571	then
4572	mc=`echo $mc \| sed 's/#/f/g'`
4573	fi
4574
4575
4576	# JOB STARTEN
4577	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4578	echo " $mc"
4579	printf "\n$striche\n"
4580	if [[ $localhost != $fromhost ]]
4581	then
4582
4583	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4584	then
4585	echo "*** ssh will be used to initiate restart-runs!"
4586	echo " return_addres=\"$return_addres\" "
4587	echo " return_username=\"$return_username\" "
4588	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4589	then
4590	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4591	else
4592	if [[ $localhost = ibmkisti ]]
4593	then
4594	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4595	else
4596	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4597	fi
4598	fi
4599	else
4600	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4601	locat=restart; exit
4602	fi
4603
4604	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4605	# DER AKTUELLE JOB ENDET
4606	if [[ $queue = special1q ]]
4607	then
4608	sleep 120
4609	else
4610	sleep 30
4611	fi
4612
4613	else
4614
4615	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4616	# RUFEN WERDEN, AUSSER AUF lcfimm
4617	cd $LOCAL_PWD
4618	if [[ $localhost = lcfimm ]]
4619	then
4620	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4621	elif [[ $localhost = lckyuh ]]
4622	then
4623	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4624	printf "\n please restart job manually using command:\n"
4625	printf "\n \"$mc\" "
4626	else
4627	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4628	fi
4629	cd - > /dev/null
4630	fi
4631	if [[ $localhost = lckyuh ]]
4632	then
4633	printf "\n$striche\n *** restart-run to be initiated manually\n"
4634	else
4635	printf "\n$striche\n *** restart-run initiated \n"
4636	fi
4637
4638
4639	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4640	# GEHOLT WORDEN SIND, LOESCHEN
4641	(( i = 0 ))
4642	while (( i < iin ))
4643	do
4644	(( i = i + 1 ))
4645	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4646	then
4647	rm -r $tmp_data_catalog/${frelin[$i]}
4648	fi
4649	done
4650
4651	else
4652
4653	printf "\n +++ no restart-run possible, since errors occured"
4654	printf "\n during the archive process"
4655	fi
4656
4657	fi
4658
4659
4660
4661	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4662	if [[ "$email_notification" != "none" ]]
4663	then
4664
4665	if [[ $localhost != $fromhost ]]
4666	then
4667	if [[ -f CONTINUE_RUN ]]
4668	then
4669	echo "PALM restart run necessary" > email_text
4670	echo "description header of actual run:" >> email_text
4671	cat CONTINUE_RUN >> email_text
4672	echo "mrun-command to restart:" >> email_text
4673	echo "$mc" >> email_text
4674	else
4675	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4676	fi
4677	mail $email_notification < email_text
4678	printf "\n *** email notification sent to \"$email_notification\" "
4679	fi
4680	fi
4681
4682
4683
4684	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4685	cd $HOME
4686	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4687
4688	else
4689
4690
4691	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4692	# CHENDE AKTIONEN DURCHGEFUEHRT
4693
4694	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4695	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4696	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4697	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4698	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4699	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4700	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4701	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4702	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4703	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4704	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4705	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4706	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4707	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4708	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4709	if [[ $use_openmp = true ]]
4710	then
4711	mrun_com=${mrun_com}" -O $threads_per_task"
4712	fi
4713	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4714	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4715	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4716	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4717	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4718	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4719	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4720	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4721	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4722	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4723	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4724	if [[ $do_remote = true ]]
4725	then
4726	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4727	fi
4728
4729
4730	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4731	jobfile=jobfile.$RANDOM
4732
4733
4734	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4735	echo "mkdir $TEMPDIR" >> $jobfile
4736	echo "cd $TEMPDIR" >> $jobfile
4737
4738
4739	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4740	if [[ $do_trace = true ]]
4741	then
4742	echo "set -x" >> $jobfile
4743	else
4744	echo "set +vx" >> $jobfile
4745	fi
4746
4747
4748	# initialize the environment and load modules
4749	if [[ "$init_cmds" != "" ]]
4750	then
4751	echo "$init_cmds" >> $jobfile
4752	fi
4753	if [[ "$module_calls" != "" ]]
4754	then
4755	echo "$module_calls" >> $jobfile
4756	fi
4757
4758
4759	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4760	# DATEI FUER DEN JOB
4761	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4762	then
4763
4764	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4765	# KOPIEREN
4766	if [[ $restart_run != true ]]
4767	then
4768	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4769	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4770	fi
4771
4772	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4773	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4774	echo "set -x" >> $jobfile
4775	if [[ $host = $localhost ]]
4776	then
4777	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4778	else
4779	if [[ $host != ibmkisti ]]
4780	then
4781	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4782	else
4783	# on KISTI's IBM firewall is only opened on interactive node
4784	echo "localdir=\`pwd\`" >> $jobfile
4785	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4786	fi
4787	fi
4788	echo "export SOURCES_COMPLETE=true" >> $jobfile
4789
4790	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4791	# ARBEITSVERZEICHNIS VERSCHIEBEN
4792	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4793	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4794	echo "execute_mrun=true" >> $jobfile
4795	echo " " >> $jobfile
4796
4797	else
4798
4799	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4800	# SOWIE GEGEBENENFALLS DES MAKEFILES
4801	if [[ $do_compile = true ]]
4802	then
4803
4804	source_catalog=SOURCES_FOR_RUN_$fname
4805
4806	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4807	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4808	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4809	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4810	echo "export SOURCES_COMPLETE=true" >> $jobfile
4811	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4812
4813	for filename in $source_list
4814	do
4815	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4816	echo "cat > $filename << \"%END%\"" >> $jobfile
4817	cat $source_catalog/$filename >> $jobfile
4818	echo " " >> $jobfile
4819	echo "%END%" >> $jobfile
4820	echo " " >> $jobfile
4821	done
4822
4823	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4824	echo "cat > Makefile << \"%END%\"" >> $jobfile
4825	cat $source_catalog/Makefile >> $jobfile
4826	echo " " >> $jobfile
4827	echo "%END%" >> $jobfile
4828	echo " " >> $jobfile
4829
4830	echo "cd - > /dev/null" >> $jobfile
4831
4832	fi
4833
4834
4835	# ABSPEICHERN DER KONFIGURATIONSDATEI
4836	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4837	# Lines with #$ coming from the svn keyword substitution are
4838	# removed from the config file in order to avoid problems
4839	# with the SGE batch system
4840	echo "cat > $config_file << \"%END%\"" >> $jobfile
4841	if [[ $host = lckyuh ]]
4842	then
4843	# no cross compiler on compute node
4844	sed 's/frtpx/frt/g' $config_file >> $jobfile
4845	else
4846	sed 's/#$.*//g' $config_file >> $jobfile
4847	fi
4848	echo "%END%" >> $jobfile
4849	echo " " >> $jobfile
4850
4851
4852	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4853	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4854	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4855	if [[ $host = lckyuh ]]
4856	then
4857	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
4858	else
4859	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4860	fi
4861	echo "%END%" >> $jobfile
4862	echo "chmod u+x $mrun_script_name" >> $jobfile
4863	echo "execute_mrun=true" >> $jobfile
4864	echo " " >> $jobfile
4865
4866	fi
4867
4868
4869	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4870	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4871	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4872	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4873	if [[ $do_remote = true ]]
4874	then
4875	(( i = 0 ))
4876	while (( i < iin ))
4877	do
4878	(( i = i + 1 ))
4879	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4880	if [[ "${transin[$i]}" = job ]]
4881	then
4882	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4883	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4884	echo " " >> $jobfile
4885	echo "%END%" >> $jobfile
4886	else
4887	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4888	fi
4889
4890	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4891	echo "if [[ \$? = 1 ]]" >> $jobfile
4892	echo "then" >> $jobfile
4893	echo " echo \" \" " >> $jobfile
4894	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4895	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4896	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4897	echo " execute_mrun=false" >> $jobfile
4898	echo "fi" >> $jobfile
4899	done
4900	fi
4901
4902	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4903	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4904	echo "LOCAL_PWD=$working_directory" >> $jobfile
4905	echo "export LOCAL_PWD" >> $jobfile
4906
4907	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4908	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4909	echo "export LOCAL_MRUN_PATH" >> $jobfile
4910
4911	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4912	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4913	then
4914	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4915	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
4916	then
4917	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
4918	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
4919	fi
4920
4921	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4922	echo "set -x" >> $jobfile
4923	echo "queue=$queue" >> $jobfile
4924	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4925	echo 'ls -al; echo `pwd`' >> $jobfile
4926	echo "cd \$HOME" >> $jobfile
4927	echo "rm -rf $TEMPDIR" >> $jobfile
4928
4929
4930
4931
4932	# JOB PER SUBJOB STARTEN
4933	if [[ $silent = false ]]
4934	then
4935	printf "\n "
4936	else
4937	printf "\n\n"
4938	fi
4939
4940	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
4941	rm -rf $jobfile
4942
4943
4944	fi # ENDE REMOTE-TEIL
4945
4946
4947
4948	# ENDE DER PROZEDUR

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