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source: palm/trunk/SCRIPTS/mrun @ 1096

Last change on this file since 1096 was 1096, checked in by raasch, 12 years ago
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Rev	Line
[71]	1	#!/bin/ksh
[1046]	2
[1059]	3	# mrun - script for running PALM jobs
	4
[1046]	5	#--------------------------------------------------------------------------------#
	6	# This file is part of PALM.
	7	#
	8	# PALM is free software: you can redistribute it and/or modify it under the terms
	9	# of the GNU General Public License as published by the Free Software Foundation,
	10	# either version 3 of the License, or (at your option) any later version.
	11	#
	12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	15	#
	16	# You should have received a copy of the GNU General Public License along with
	17	# PALM. If not, see <http://www.gnu.org/licenses/>.
	18	#
	19	# Copyright 1997-2012 Leibniz University Hannover
	20	#--------------------------------------------------------------------------------#
	21	#
	22	# Current revisions:
[1090]	23	# ------------------
[1096]	24	#
[1046]	25	#
	26	# Former revisions:
	27	# -----------------
[1047]	28	# $Id: mrun 1096 2013-02-03 02:49:41Z raasch $
	29	#
[1096]	30	# 1094 2013-02-03 01:52:12Z raasch
	31	# explicit ssh/scp port can be set in config file with environment variable
	32	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
	33	# decalpha parts (yonsei) removed
	34	#
[1091]	35	# 2013-02-02 07:06:13Z raasch
	36	# adjustments for Kyushu-University computing center (lckyut)
	37	#
[1084]	38	# 1083 2013-01-04 10:22:09Z maronga
	39	# bugfix in parameter file check (read %cpp_options was missing)
	40	#
[1070]	41	# 1069 2012-11-28 16:18:43Z maronga
	42	# bugfix: coupling mode was always set to mpi2, typos removed
	43	#
[1059]	44	# 1058 2012-11-21 07:00:35Z raasch
	45	# Intel inspector (inspxe) is given the number of PEs instead of the number of
	46	# nodes
	47	#
[1047]	48	# 1046 2012-11-09 14:38:45Z maronga
	49	# code put under GPL (PALM 3.9)
	50	#
[1090]	51	# 21/03/94 - Siggi - first version finished
	52	# 03/03/94 - Siggi - script development started
	53	#
[1059]	54	#--------------------------------------------------------------------------------#
[1090]	55	# mrun - script for running PALM jobs
	56	#--------------------------------------------------------------------------------#
[1]	57
[1047]	58
[1]	59
	60	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	61
	62	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	63	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	64	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	65
	66	AddFilenames=""
	67	additional_conditions=""
	68	add_source_path=""
	69	afname=""
	70	archive_save=true
	71	archive_system=none
[807]	72	check_namelist_files=true
[920]	73	combine_plot_fields=true
[1]	74	compiler_name=""
	75	cond1=""
	76	cond2=""
	77	config_file=.mrun.config
[206]	78	coupled_dist=""
	79	coupled_mode="mpi1"
[1]	80	cpp_opts=""
[82]	81	cpp_options=""
[1]	82	cpumax=0
	83	cpurest=0
	84	delete_temporary_catalog=true
	85	do_batch=false
	86	do_compile=true
	87	do_remote=false
	88	do_stagein=true
	89	do_stageout=true
	90	do_trace=false
[352]	91	email_notification="none"
[1]	92	exclude=""
	93	executable=""
	94	execution_error=false
[67]	95	fimm=false
[1]	96	fname=test
	97	fromhost=""
[78]	98	global_revision=""
[122]	99	group_number=none
[1]	100	host=""
	101	host_file=""
	102	hp=""
	103	ignore_archive_error=false
	104	input_list=""
	105	interpreted_config_file=""
[164]	106	job_catalog="~/job_queue"
[1]	107	job_on_file=""
	108	keep_data_from_previous_run=false
[183]	109	link_local_input=false
[149]	110	link_local_output=false
[1]	111	localhost_realname=$(hostname)
	112	local_compile=false
[260]	113	local_dvrserver_running=.FALSE.
[1]	114	locat=normal
	115	mainprog=""
	116	makefile=""
[759]	117	max_par_io_str=""
[1]	118	mc=$0
	119	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	120	do
	121	mc=`echo $mc \| cut -f2- -d"/"`
	122	done
[493]	123	module_calls=""
[1]	124	mrun_script_name=$mc
[82]	125	netcdf_inc=""
	126	netcdf_lib=""
[1]	127	netcdf_support=false
	128	node_usage=default
	129	numprocs=""
[206]	130	numprocs_atmos=0
	131	numprocs_ocean=0
[1]	132	OOPT=""
	133	openmp=false
	134	output_list=""
	135	package_list=""
	136	punkte="..........................................................."
	137	queue=none
	138	read_from_config=""
[5]	139	restart_run=false
[622]	140	if [[ `hostname` = rte10 ]]
[1]	141	then
[622]	142	return_addres=133.5.185.60
[693]	143	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
	144	elif [[ `hostname` = climate0 ]]
	145	then
	146	return_addres=165.132.26.68
	147	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
[1021]	148	elif [[ `hostname` = urban00 ]]
	149	then
	150	return_addres=147.46.30.151
	151	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
[622]	152	else
	153	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	154	fi
	155	return_password=""
	156	return_username=$LOGNAME
	157	remotecall=false
	158	remote_username=""
[102]	159	run_coupled_model=false
[1]	160	run_mode=""
	161	scirocco=false
[397]	162	store_on_archive_system=false
[1]	163	striche=" ----------------------------------------------------------------------------"
	164	silent=false
	165	source_list=""
	166	source_path=SOURCE
	167	tasks_per_node=""
	168	threads_per_task=1
	169	tmpcreate=false
	170	tmp_data_catalog=""
	171	transfer_problems=false
	172	usern=$LOGNAME
[377]	173	use_openmp=false
[1]	174	working_directory=`pwd`
	175	TOPT=""
	176	XOPT=""
	177	zeit=$( date \| cut -c 12-19 )
	178
	179	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	180	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	181
[66]	182	typeset -R30 calltime
[1]	183	typeset -L20 spalte1
	184	typeset -L40 spalte2
	185	typeset -L60 spalte3
	186	typeset -L35 string1=`date`
	187	typeset -L12 string2=$usern
	188	typeset -L12 string3=$localhost_realname
	189	typeset -L12 string4
	190	typeset -L12 string5
[201]	191	typeset -L30 version="MRUN 2.0 Rev$Rev: 1096 $"
[1]	192
	193
	194
	195	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	196	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	197
	198	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	199	# EXPORTIERT WERDEN
	200	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	201	export group_number input_list memory numprocs output_list queue run_mode
[1]	202
	203
	204
	205	# FEHLERBEHANDLUNG
	206	# BEI EXIT:
[83]	207	trap 'rm -rf $working_directory/tmp_mrun
[69]	208	if [[ $locat != localhost ]]
[1]	209	then
[22]	210	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	211	# then
	212	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	213	#MRUN-calls on $localhost
	214	#
	215	#date and time user localhost remotehost termination mrun-command
	216	#--------------------------------------------------------------------------------------------------------------------
	217	#%STATEND%
	218	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	219	# fi
	220	#
	221	# # EINTRAG IN DIE STATISTIK-DATEI
	222	# string4=$host
	223	# string5=$locat
	224	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	225	# then
	226	# if [[ $do_batch = true ]]
	227	# then
	228	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	229	# else
	230	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	231	# fi
	232	# fi
[69]	233	echo " " > /dev/null
[1]	234	fi
	235
	236	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	237	then
	238
	239	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	240	(( i = 0 ))
	241	while (( i < iec ))
	242	do
	243	(( i = i + 1 ))
	244	printf "\n *** Execution of ERROR-command:\n"
	245	printf " >>> ${err_command[$i]}\n"
	246	eval ${err_command[$i]}
	247	done
	248	if [[ -n $interpreted_config_file ]] then
	249	rm -rf $interpreted_config_file
	250	fi
[71]	251	if [[ -n .mrun_environment ]] then
	252	rm -rf .mrun_environment
	253	fi
[1]	254	if [[ $tmpcreate = true ]]
	255	then
	256	printf "\n *** Contents of \"$TEMPDIR\":\n"
	257	ls -al; cd
	258	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	259	fi
[260]	260	if [[ "$dvrserver_id" != "" ]]
	261	then
	262	echo "+++ killing dvrserver_id=$dvrserver_id"
	263	kill $dvrserver_id
	264	fi
[1]	265	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	266	then
	267	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	268	fi
	269	printf "\n\n+++ MRUN killed \n\n"
	270	elif [[ $locat != control_c ]]
	271	then
	272	printf "\n\n --> all actions finished\n\n"
	273	printf " Bye, bye $usern !!\n\n"
	274	fi' exit
	275
	276
	277	# BEI TERMINAL-BREAK:
[83]	278	trap 'rm -rf $working_directory/tmp_mrun
[807]	279	rm -rf $working_directory/tmp_check_namelist_files
[69]	280	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	281	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	282	then
	283	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	284	fi
[260]	285	if [[ "$dvrserver_id" != "" ]]
	286	then
	287	echo "+++ killing dvrserver_id=$dvrserver_id"
	288	kill $dvrserver_id
	289	fi
[1]	290	printf "\n+++ MRUN killed by \"^C\" \n\n"
	291	locat=control_c
	292	exit
	293	' 2
	294
	295
[22]	296	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	297	# BEEN SET
	298	if [[ "$PALM_BIN" = "" ]]
	299	then
	300	printf "\n +++ environment variable PALM_BIN has not been set"
	301	printf "\n please set it to the directory where the PALM scripts are located"
	302	locat=palm_bin; exit
	303	fi
[180]	304	export PATH=$PALM_BIN:$PATH
[22]	305
	306
[1]	307
	308	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	309	# FUER FOLGEJOBS BENOETIGT WIRD
[920]	310	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
[1]	311	do
	312	case $option in
	313	(a) afname=$OPTARG;;
[397]	314	(A) store_on_archive_system=true; mc="$mc -A";;
[1]	315	(b) do_batch=true; mc="$mc -b";;
	316	(B) delete_temporary_catalog=false; mc="$mc -B";;
	317	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	318	(C) restart_run=true; mc="$mc -C";;
[1]	319	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	320	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	321	(F) job_on_file="-D"; mc="$mc -F";;
[122]	322	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	323	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	324	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	325	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	326	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	327	(I) ignore_archive_error=true; mc="$mc -I";;
	328	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	329	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	330	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	331	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	332	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	333	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
[622]	334	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
[1]	335	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	336	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	337	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	338	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	339	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	340	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	341	(S) read_from_config=false; mc="$mc -S";;
	342	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
[759]	343	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
[1]	344	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	345	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	346	(v) silent=true; mc="$mc -v";;
[759]	347	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
[1]	348	(x) do_trace=true;set -x; mc="$mc -x";;
	349	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	350	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	351	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[807]	352	(z) check_namelist_files=false; mc="$mc -z";;
[920]	353	(Z) combine_plot_fields=false; mc="$mc -Z";;
[1]	354	(\?) printf "\n +++ unknown option $OPTARG \n"
	355	printf "\n --> type \"$0 ?\" for available options \n"
	356	locat=parameter;exit;;
	357	esac
	358	done
	359
	360
	361	# EVTL. POSITIONSPARAMETER EINLESEN
	362	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	363	shift OPTIND-1
	364
	365
	366	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	367	if [[ "$1" = "?" ]]
	368	then
	369	(printf "\n *** mrun can be called as follows:\n"
[920]	370	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
[1]	371	printf "\n Description of available options:\n"
	372	printf "\n Option Description Default-Value"
	373	printf "\n -a base name of input files equiv. -d"
[400]	374	printf "\n -A archiving when using file-attribute fl"
[1]	375	printf "\n -b batch-job on local machine ---"
	376	printf "\n -B do not delete temporary directory at end ---"
	377	printf "\n -c configuration file .mrun.config"
	378	printf "\n -d base name of files attached to program test"
	379	printf "\n -D preprocessor(cpp)-directives \"\" "
	380	printf "\n -F create remote job file only ---"
	381	printf "\n -h execution host $localhost_realname"
	382	printf "\n -i INPUT control list \"\" "
	383	printf "\n -I archiving errors of previous batch-jobs"
	384	printf "\n will be ignored"
	385	printf "\n -k keep data from previous run"
	386	printf "\n -K additional conditions for controling"
	387	printf "\n usage of conditional code and"
	388	printf "\n env-variables in configuration file \"\" "
	389	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	390	printf "\n -M Makefile name Makefile"
	391	printf "\n -n node usage (shared/not_shared) depending on -h"
	392	printf "\n -o OUTPUT control list \"\" "
	393	printf "\n -O use OpenMP ---"
	394	printf "\n -p software package list \"\" "
	395	printf "\n -q queue \"$queue\" "
	396	printf "\n -r run control list (combines -i -o) \"\" "
	397	printf "\n -s filenames of routines to be compiled \"\" "
	398	printf "\n must end with .f, .f90, .F, or .c !"
	399	printf "\n use \"..\" for more than one file and wildcards"
[837]	400	printf "\n -s LM compiles all locally modified files"
[1]	401	printf "\n -S config file interpreted by shellscript ---"
	402	printf "\n -t allowed cpu-time in seconds (batch) 0"
	403	printf "\n -T tasks per node depending on -h"
	404	printf "\n -u username on remote machine \"\" "
	405	printf "\n -v no prompt for confirmation ---"
[759]	406	printf "\n -w maximum parallel io streams as given by -X"
[1]	407	printf "\n -x tracing of mrun for debug purposes ---"
	408	printf "\n -X # of processors (on parallel machines) 1"
[291]	409	printf "\n -y add appendix \"_O\" to all local output"
	410	printf "\n files (ocean precursor runs followed by"
	411	printf "\n coupled atmosphere-ocean runs) ---"
[206]	412	printf "\n -Y run coupled model, \"#1 #2\" with"
	413	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[920]	414	printf "\n -z disable a priori parameter file check ---"
	415	printf "\n -Z skip combine_plot_fields at the end of "
	416	printf "\n the simulation ---"
[1]	417	printf "\n "
	418	printf "\n Possible values of positional parameter <modus>:"
	419	printf "\n \"?\" - this outline \n\n") \| more
	420	exit
	421	elif [[ "$1" != "" ]]
	422	then
	423	printf "\n +++ positional parameter $1 unknown \n"
	424	locat=parameter; exit
	425	fi
	426
	427
	428
	429	# KURZE STARTMELDUNG
	430	printf "\n*** $version "
	431	printf "\n will be executed. Please wait ..."
	432
	433
[82]	434
	435	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	436	if [[ ! -f $config_file ]]
	437	then
	438	printf "\n\n +++ configuration file: "
	439	printf "\n $config_file"
	440	printf "\n does not exist"
	441	locat=connect; exit
	442	fi
	443
	444
	445	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	446	line=""
	447	grep "%host_identifier" $config_file > tmp_mrun
	448	while read line
	449	do
[206]	450	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	451	then
	452	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	453	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	454	if [[ $localhost_realname = $HOSTNAME ]]
[82]	455	then
	456	localhost=$host_identifier
	457	break
	458	fi
	459	fi
	460	done < tmp_mrun
	461
	462	if [[ "$localhost" = "" ]]
	463	then
	464	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	465	printf "\n for local host \"$localhost_realname\"."
	466	printf "\n Please add line"
	467	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	468	printf "\n to the configuration file."
	469	locat=localhost; exit
	470	fi
	471
	472
	473	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	474	case $localhost_realname in
[397]	475	(r1\|r2\|h01\|b01) archive_system=tivoli;;
[82]	476	(cs*) archive_system=ut;;
	477	(fimm.bccs.uib.no) fimm=true;;
	478	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	479	(scirocco) scirocco=true;;
	480	esac
	481
	482
	483
[1]	484	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	485	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	486	[[ "$afname" = "" ]] && afname=$fname
	487
	488
	489	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	490	if [[ "$run_mode" != "" ]]
	491	then
	492	input_list="$input_list $run_mode"
	493	output_list="$output_list $run_mode"
	494	fi
	495
	496
	497	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	498	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	499	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	500	# STARTET)
	501	if [[ "$fromhost" = "" ]]
	502	then
	503	fromhost=$localhost
	504	fi
	505
	506
	507	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	508	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	509	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	510	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	511	if [[ -n $host && "$host" != $localhost ]]
	512	then
	513	do_batch=true
	514	do_remote=true
	515	case $host in
[1090]	516	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyut\|lcsb) true;;
[1]	517	(*) printf "\n"
[83]	518	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	519	printf "\n is not available"
[1]	520	locat=nqs; (( iec = 0 )); exit;;
	521	esac
	522	else
	523	host=$localhost
	524	fi
	525
	526
	527	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	528	if [[ -n $additional_conditions ]]
	529	then
[69]	530	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	531	cond1=`echo $additional_conditions \| cut -d" " -f1`
	532	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	533	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	534	if [[ -n $dummy ]]
	535	then
	536	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	537	locat=options; exit
	538	fi
[503]	539	block=_$cond1
	540	[[ -n $cond2 ]] && block=${block}_$cond2
[1]	541	fi
	542
	543
[206]	544	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	545	if [[ $run_coupled_model = true ]]
	546	then
	547
	548	if [[ -n $coupled_dist ]]
	549	then
	550
	551	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	552	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	553
	554	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	555	then
	556
	557	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	558	printf "\n PEs (total) : $numprocs"
	559	printf "\n PEs (atmosphere): $numprocs_atmos"
	560	printf "\n PEs (ocean) : $numprocs_ocean"
	561	locat=coupling; exit
	562
	563	fi
	564
	565	else
	566
	567	(( numprocs_ocean = $numprocs / 2 ))
	568	(( numprocs_atmos = $numprocs / 2 ))
	569
	570	fi
	571	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	572
	573	# GET coupled_mode FROM THE CONFIG FILE
	574	line=""
	575	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	576	while read line
	577	do
[1069]	578	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
[206]	579	then
	580	coupled_mode="mpi2"
	581	fi
	582	done < tmp_mrun
	583
	584	fi
	585
	586
[1]	587	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	588	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	589	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	590	then
	591	if [[ $ignore_archive_error = false ]]
	592	then
	593	printf "\n +++ data archiving of previous run failed"
	594	printf "\n see directory \~/job_queue on remote machine"
	595	locat=archive; exit
	596	else
	597	printf "\n +++ warning: data archiving in a previous run failed"
	598	printf "\n MRUN continues, trying to get backup copy"
	599	fi
	600	fi
	601
	602
	603
	604	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	605	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	606	if [[ "$read_from_config" = false ]]
	607	then
	608
	609	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	610	while read zeile
	611	do
	612	[[ $silent = false ]] && printf "."
	613
	614
	615	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	616	# ERSETZEN
	617	eval zeile=\"$zeile\"
	618
	619
	620	# INTERPRETATION DER ZEILE
[21]	621	if [[ "$(echo $zeile)" = "" ]]
[1]	622	then
[21]	623	# LEERZEILE, KEINE AKTION
	624	continue
[1]	625
[21]	626	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	627	then
	628
[1]	629	# ZEILE IST KOMMENTARZEILE
	630	true
	631
	632	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	633	then
	634
	635	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	636	zeile=$(echo $zeile \| cut -c2-)
[69]	637	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	638	var=`echo $zeile \| cut -d" " -f1`
	639	value=`echo $zeile \| cut -d" " -s -f2`
	640	for_host=`echo $zeile \| cut -d" " -s -f3`
	641	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	642	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	643
	644	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	645	then
	646
	647	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	648	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	649	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	650
	651
	652	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	653	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	654	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	655	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	656	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	657	# KONFIGURATIONSDATEI
	658	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	659	then
	660	eval $var=\$value
	661
	662	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	663	if [[ $do_trace = true ]]
	664	then
	665	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	666	fi
	667	fi
	668
	669	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	670	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	671	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	672	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	673	if [[ $var = host ]]
	674	then
	675	if [[ -n $host && "$host" != $localhost ]]
	676	then
	677	do_batch=true
	678	do_remote=true
	679	case $host in
[1090]	680	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyut\|lcsb) true;;
[83]	681	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	682	printf "\n is not available"
[1]	683	locat=nqs; exit;;
	684	esac
	685	else
	686	host=$localhost
	687	fi
	688	fi
	689
	690	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	691	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	692	# DEN PROGRAMMEN BENOETIGT WERDEN
	693	export $var
	694	fi
	695
	696
	697
	698
	699	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	700	then
	701
	702	# ZEILE DEFINIERT ERROR-KOMMANDO
	703	(( iec = iec + 1 ))
	704	zeile=$(echo $zeile \| cut -c4-)
	705	err_command[$iec]="$zeile"
	706
	707	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	708	then
	709
	710	# ZEILE DEFINIERT INPUT-KOMMANDO
	711	(( iic = iic + 1 ))
	712	zeile=$(echo $zeile \| cut -c4-)
	713	in_command[$iic]="$zeile"
	714
	715	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	716	then
	717
	718	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	719	(( ioc = ioc + 1 ))
	720	zeile=$(echo $zeile \| cut -c4-)
	721	out_command[$ioc]="$zeile"
	722
	723	else
	724
	725	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	726	# s2a: in/out - Feld
	727	# s2b: loc - Feld (optional)
	728	# s2c: tr/ar - Feld (optional)
[69]	729	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	730	s1=`echo $zeile \| cut -d" " -f1`
	731	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	732	s2a=$(echo $s2 \| cut -d":" -f1)
	733	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	734	then
	735	s2b=""
	736	s2c=""
	737	else
[69]	738	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	739	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	740	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	741	fi
[69]	742	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	743	s3=`echo $zeile \| cut -d" " -f3`
	744	s4=`echo $zeile \| cut -d" " -s -f4`
	745	s5=`echo $zeile \| cut -d" " -s -f5`
	746	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	747
	748
	749	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	750	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	751	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	752	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	753	# HANDEN SEIN MUSS (D.H. s2b = loc)
	754	IFSALT="$IFS"; IFS="$IFS:"
	755	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	756	then
	757	found=false
	758	for actual in $input_list
	759	do
	760	for formal in $s3
	761	do
	762	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	763	done
	764	done
	765	if [[ $found = true ]]
	766	then
	767	(( iin = iin + 1 ))
	768	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	769	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	770	extin[$iin]=$s6
	771	fi
	772	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	773	then
	774	found=false
	775	for actual in $output_list
	776	do
	777	for formal in $s3
	778	do
	779	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	780	done
	781	done
	782	if [[ $found = true ]]
	783	then
	784	(( iout = iout + 1 ))
	785	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	786	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	787	fi
	788	elif [[ "$s2a" != in && "$s2a" != out ]]
	789	then
	790	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	791	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	792	locat=connect; exit
	793	fi
	794	IFS="$IFSALT"
	795	fi
	796	done < $config_file
	797
	798	else
	799
	800
	801	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	802	[[ $silent = false ]] && printf "..."
	803	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	804	export interpreted_config_file=.icf.$RANDOM
	805
	806
[69]	807
	808	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	809	# VERFUEGUNG STELLEN
	810	cat > .mrun_environment << %%END%%
	811	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	812	config_file = '$config_file', do_remote = '$do_remote',
	813	do_trace = '$do_trace', host = '$host',
	814	input_list = '$input_list', icf = '$interpreted_config_file',
	815	localhost = '$localhost', output_list = '$output_list' /
	816
	817	%%END%%
	818
	819	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	820	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	821	mrun_memory=$memory
[127]	822	mrun_group_number=$group_number
[69]	823	mrun_cpumax=$cpumax
	824	mrun_numprocs=$numprocs
	825
[251]	826	if [[ $localhost_realname = "sx-fep" ]]
[66]	827	then
[251]	828	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	829	else
[503]	830
	831	if [[ "$host" != $localhost ]]
	832	then
	833
	834	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
	835	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
	836	if [[ $? != 0 ]]
	837	then
	838	printf "\n\n +++ no interpret_config found"
	839	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
	840	locat=interpret_config; exit
	841	fi
	842	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
	843	$interpret_config_executable
	844
	845	else
	846
	847	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
	848	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
	849	then
	850	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
	851	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
	852	locat=interpret_config; exit
	853	else
	854	interpret_config${block}.x
	855	fi
	856
	857	fi
[66]	858	fi
[71]	859	rm .mrun_environment
[1]	860
[71]	861
[1]	862	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	863	chmod u+x $interpreted_config_file
	864	export PATH=$PATH:.
	865	. $interpreted_config_file
[71]	866	rm $interpreted_config_file
[1]	867
[71]	868
[69]	869	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[759]	870	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	871	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[759]	872	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	873	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
	874	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
	875	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
[69]	876
[1]	877	fi
	878
	879
	880	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	881	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	882	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	883	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	884	if [[ "$SOURCES_COMPLETE" = "" ]]
	885	then
	886
	887	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	888	# VEREINBART WURDE
	889	source_path=""
	890	line=""
	891	grep "%source_path" $config_file > tmp_mrun
	892	while read line
	893	do
	894	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	895	then
	896	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	897	then
	898	global_source_path=`echo $line \| cut -d" " -f2`
	899	fi
	900	fi
	901	done < tmp_mrun
	902
	903	line=""
	904	found=false
	905	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	906	while read line
	907	do
	908	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	909	then
	910	if [[ $found = true ]]
	911	then
	912	printf "\n\n +++ more than one source path found in configuration file"
	913	printf "\n for local host \"$localhost\" "
	914	locat=source_path; exit
	915	fi
	916	source_path=`echo $line \| cut -d" " -f2`
	917	found=true
	918	fi
	919	done < tmp_mrun
	920	rm tmp_mrun
	921
	922	if [[ "$source_path" = "" ]]
	923	then
	924	if [[ "$global_source_path" != "" ]]
	925	then
	926	source_path=$global_source_path
	927	else
	928	printf "\n\n +++ no source path found in configuration file"
	929	printf "\n for local host \"$localhost\" "
	930	locat=source_path; exit
	931	fi
	932	fi
	933	eval source_path=$source_path
	934
	935	if [[ ! -d $source_path ]]
	936	then
	937	printf "\n\n +++ source path \"$source_path\" on local host"
	938	printf "\n \"$localhost\" does not exist"
	939	locat=source_path; exit
	940	fi
	941
	942	fi
	943
	944
[78]	945	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	946	# DURCH OPTION -G MITGETEILT)
[693]	947	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
[78]	948	then
	949	global_revision=`svnversion $source_path 2>/dev/null`
	950	global_revision="Rev: $global_revision"
	951	fi
[1]	952
[78]	953
[1]	954	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	955	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	956	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	957	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	958	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	959	if [[ -n $host && "$host" != $localhost ]]
	960	then
	961	do_batch=true
	962	do_remote=true
	963	case $host in
[1090]	964	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyut\|lcsb) true;;
[1]	965	(*) printf "\n"
[83]	966	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	967	printf "\n is not available"
[1]	968	locat=nqs; (( iec = 0 )); exit;;
	969	esac
	970	else
	971	host=$localhost
	972	fi
	973
	974
	975	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	976	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	977	then
	978
	979	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	980	if [[ ! -n $numprocs ]]
	981	then
	982	printf "\n"
	983	printf "\n +++ option \"-K parallel\" requires additional specification"
	984	printf "\n of the number of processors to be used by"
	985	printf "\n mrun-option \"-X\" or by environment-variable"
	986	printf "\n \"numprocs\" in the configuration file"
	987	locat=numprocs; (( iec = 0 )); exit
	988	fi
	989
	990	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	991	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	992	# GESAMTPROZESSORANZAHL IST
[1039]	993	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
[1]	994	then
[759]	995	printf "\n"
	996	printf "\n +++ option \"-T\" (tasks per node) is missing"
	997	printf "\n set -T option or define tasks_per_node in the config file"
	998	locat=tasks_per_node; (( iec = 0 )); exit
	999	fi
[1039]	1000	if [[ $host != lcflow && $host != lcxt5m ]]
[759]	1001	then
[848]	1002	(( ival = $tasks_per_node ))
	1003	(( pes = numprocs ))
	1004	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1005	# then
	1006	# (( pes = pes - 1 ))
	1007	# fi
	1008	(( ii = pes / ival ))
	1009	if (( pes - ii * ival > 0 ))
	1010	then
	1011	printf "\n"
	1012	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1013	printf "\n divisor of the total number of processors (option \"-X\")"
	1014	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1015	locat=tasks_per_node; (( iec = 0 )); exit
	1016	fi
[1]	1017	fi
	1018
[759]	1019
[1]	1020	# IBMY HAT NUR EINEN KNOTEN
	1021	if [[ $host = ibmy ]]
	1022	then
	1023	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1024	then
	1025	printf "\n"
	1026	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1027	printf "\n total number of processors (option \"-X\")"
	1028	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1029	locat=tasks_per_node; (( iec = 0 )); exit
	1030	fi
	1031	fi
	1032
[377]	1033
	1034	# SETTINGS FOR SUBJOB-COMMAND
[622]	1035	TOPT="-T $tasks_per_node"
[1]	1036	OOPT="-O $threads_per_task"
	1037
	1038	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1039	if [[ "$tasks_per_node" != "" ]]
	1040	then
	1041	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1042	fi
	1043
	1044	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1045	# SETZEN
	1046	if [[ $node_usage = default ]]
	1047	then
	1048	if [[ $host = ibms ]]
	1049	then
	1050	node_usage=shared
[181]	1051	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1052	then
	1053	node_usage=singlejob
[1]	1054	else
	1055	node_usage=not_shared
	1056	fi
	1057	fi
[181]	1058
[635]	1059	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
[1]	1060	then
	1061	printf "\n"
	1062	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1063	printf "\n \"shared\" or \"not_shared\""
	1064	locat=tasks_per_node; (( iec = 0 )); exit
	1065	fi
	1066
	1067	fi
	1068
	1069	# PRUEFEN, OB HOSTFILE EXISTIERT
	1070	if [[ -n $hostfile ]]
	1071	then
	1072	if [[ ! -f $hostfile ]]
	1073	then
	1074	printf "\n"
	1075	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1076	locat=hostfile; exit
	1077	fi
	1078	fi
	1079
	1080	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1081	if [[ $host = ibmy && $do_remote = false ]]
	1082	then
	1083	if [[ ! -f $HOME/.rhosts ]]
	1084	then
	1085	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1086	printf "\n\n *** file:"
	1087	printf "\n $HOME/.rhosts"
	1088	printf "\n was created\n"
	1089	fi
	1090	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1091	then
	1092	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1093	printf "\n\n *** file:"
	1094	printf "\n $HOME/.rhosts"
	1095	printf "\n was extended by the name of the current host\n"
	1096	fi
	1097	fi
	1098
	1099
[759]	1100	# Set default value for the maximum number of parallel io streams
	1101	if [[ "$maximum_parallel_io_streams" = "" ]]
	1102	then
	1103	maximum_parallel_io_streams=$numprocs
	1104	fi
[1]	1105
[759]	1106
[1094]	1107	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
	1108	if [[ "$scp_port" != "" ]]
	1109	then
	1110	PORTOPT="-P $scp_port"
	1111	SSH_PORTOPT="-p $scp_port"
	1112	fi
	1113
	1114
[1]	1115	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1116	if [[ $queue = none ]]
	1117	then
	1118	case $host in
[312]	1119	(ibmh) queue=no_class;;
[693]	1120	(ibmkisti) queue=class.32plus;;
[1]	1121	(ibmy) queue=parallel;;
[1040]	1122	(lckiaps) queue=normal;;
[440]	1123	(lckyoto) queue=ph;;
[1090]	1124	(lckyut) queue=cx-dbg;;
[821]	1125	(lcsgib) queue=testq;;
	1126	(lcsgih) queue=testq;;
[635]	1127	(lctit) queue=S;;
[1]	1128	(nech) queue=none;;
[253]	1129	(necriam) queue=SP;;
[1]	1130	(unics) queue=unics;;
	1131	esac
	1132	fi
	1133
	1134
	1135	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1136	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1137	# ERMITTELN
	1138	(( i = 0 ))
	1139	while (( i < iin ))
	1140	do
	1141	(( i = i + 1 ))
	1142	(( maxcycle = 0 ))
	1143
	1144	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1145	if [[ "${actionin[$i]}" = di ]]
	1146	then
	1147	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1148	# REM-MASCHINE AUSWERTEN
	1149	eval filename=${pathin[$i]}/${endin[$i]}
	1150	else
	1151	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1152	# REM-MASCHINE AUSWERTEN
	1153	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1154	fi
[892]	1155	eval pathname=${pathin[$i]}
[1]	1156
[920]	1157	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
	1158	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
	1159	then
	1160	filename_input=$filename
	1161	fi
[892]	1162
[1]	1163	# PRUEFEN AUF VORHANDENSEIN
	1164	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
[746]	1165	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
[1]	1166	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1167	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1168	then
	1169	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1170	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1171	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1172	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1173	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1174	if [[ "${transin[$i]}" != "locopt" ]]
	1175	then
	1176	printf "\n\n +++ INPUT-file: "
	1177	if [[ "${extin[$i]}" = "" ]]
	1178	then
	1179	printf "\n $filename"
	1180	else
	1181	printf "\n $filename.${extin[$i]}"
	1182	fi
	1183	printf "\n does not exist\n"
	1184	locat=input; exit
	1185	else
	1186	transin[$i]="unavailable"
	1187	fi
	1188	else
	1189
	1190	# ZYKLUSNUMMER FESTSTELLEN
	1191	ls -1 -d $filename > filelist 2>/dev/null
	1192	ls -1 -d $filename.* >> filelist 2>/dev/null
	1193	while read zeile
	1194	do
	1195	cycle=$(print $zeile \| cut -f2 -d".")
	1196	if [[ "$cycle" = "$zeile" ]]
	1197	then
	1198	(( icycle = 0 ))
	1199	elif [[ "$cycle" = "${extin[$i]}" ]]
	1200	then
	1201	(( icycle = 0 ))
	1202	else
	1203	(( icycle = $cycle ))
	1204	fi
	1205	if (( icycle > maxcycle ))
	1206	then
	1207	(( maxcycle = icycle ))
	1208	file_to_be_used=$zeile
	1209	fi
	1210	done <filelist
	1211	rm filelist
	1212
	1213	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1214	if (( maxcycle > 0 ))
	1215	then
	1216	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1217	then
	1218	filename=${filename}.$maxcycle.${extin[$i]}
	1219	else
	1220	filename=${filename}.$maxcycle
	1221	fi
	1222	else
	1223	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1224	then
	1225	filename=${filename}.${extin[$i]}
	1226	fi
	1227	fi
	1228
	1229	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1230	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1231	absnamein[$i]=$filename
	1232	if (( maxcycle > 0 ))
	1233	then
	1234	if [[ "${actionin[$i]}" = di ]]
	1235	then
	1236	frelin[$i]=${endin[$i]}.$maxcycle
	1237	else
	1238	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1239	fi
	1240	else
	1241	if [[ "${actionin[$i]}" = di ]]
	1242	then
	1243	frelin[$i]=${endin[$i]}
	1244	else
	1245	frelin[$i]=${afname}${endin[$i]}
	1246	fi
	1247	fi
	1248
	1249	fi
	1250	done
[920]	1251
[1]	1252	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1253	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1254	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1255	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1256	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1257	(( i = 0 ))
	1258	while (( i < iout ))
	1259	do
	1260	(( i = i + 1 ))
	1261	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1262	then
[260]	1263	if [[ "${actionout[$i]}" = tr ]]
[1]	1264	then
	1265	actionout[$i]=""
[260]	1266	elif [[ "${actionout[$i]}" = trpe ]]
	1267	then
	1268	actionout[$i]=pe
[1]	1269	elif [[ "${actionout[$i]}" = tra ]]
	1270	then
	1271	actionout[$i]=a
	1272	fi
	1273	(( maxcycle = 0 ))
	1274	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1275	eval catalogname=${pathout[$i]}
	1276	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
[746]	1277	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
[1]	1278	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1279	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1280	then
	1281
	1282	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1283	if cat /dev/null > $filename
	1284	then
	1285	rm $filename
	1286	else
	1287
	1288	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1289	if [[ ! -d $catalogname ]]
	1290	then
	1291	if mkdir -p $catalogname
	1292	then
	1293	printf "\n\n *** directory:"
	1294	printf "\n $catalogname"
	1295	printf "\n was created\n"
	1296	else
	1297	printf "\n\n +++ OUTPUT-file:"
	1298	printf "\n $filename"
	1299	printf "\n cannot be created, because directory does not exist"
	1300	printf "\n and cannot be created either"
	1301	printf "\n"
	1302	locat=output ; exit
	1303	fi 2>/dev/null
	1304	else
	1305	printf "\n\n +++ OUTPUT-file:"
	1306	printf "\n $filename"
	1307	printf "\n cannot be created, although directory exists"
	1308	printf "\n"
	1309	locat=output ; exit
	1310	fi
	1311	fi 2>/dev/null
	1312	else
	1313
	1314	# ZYKLUSNUMMER FESTSTELLEN
	1315	ls -1 -d $filename > filelist 2>/dev/null
	1316	ls -1 -d $filename.* >> filelist 2>/dev/null
	1317	while read zeile
	1318	do
	1319	cycle=$(print $zeile \| cut -f2 -d".")
	1320	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1321	then
	1322	(( icycle = 1 ))
	1323	else
	1324	(( icycle = $cycle + 1 ))
	1325	fi
	1326	if (( icycle > maxcycle ))
	1327	then
	1328	(( maxcycle = icycle ))
	1329	fi
	1330	done <filelist
	1331	rm filelist
	1332	fi
	1333
	1334	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1335	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1336	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1337	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1338	if [[ "${actionout[$i]}" != a ]]
	1339	then
	1340	if (( maxcycle > 0 ))
	1341	then
	1342	filename=${filename}.$maxcycle
	1343	if cat /dev/null > $filename
	1344	then
	1345	rm $filename
	1346	else
	1347	printf "\n +++ OUTPUT-file:"
	1348	printf "\n $filename"
	1349	printf "\n cannot be created"
	1350	locat=output ; exit
	1351	fi
	1352	fi
	1353	else
	1354	(( maxcycle = maxcycle - 1 ))
	1355	if (( maxcycle > 0 ))
	1356	then
	1357	filename=${filename}.$maxcycle
	1358	fi
	1359	fi
	1360
	1361	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1362	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1363	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1364	pathout[$i]=$filename
	1365	if (( maxcycle > 0 ))
	1366	then
	1367	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1368	else
	1369	frelout[$i]=${fname}${endout[$i]}
	1370	fi
	1371
	1372	fi
	1373	done
	1374
	1375
[260]	1376	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1377	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1378	then
[260]	1379	if [[ "$dvr_inc" = "" ]]
[83]	1380	then
[260]	1381	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1382	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1383	locat=dvr; exit
[83]	1384	fi
[260]	1385	if [[ "$dvr_lib" = "" ]]
[83]	1386	then
[260]	1387	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1388	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1389	locat=dvr; exit
[83]	1390	fi
	1391	fi
	1392
	1393
[1]	1394	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1395	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1396	# UEBERSETZT ZU WERDEN)
	1397	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1398	then
	1399	printf "\n +++ neither main program nor executable defined"
	1400	locat=source; exit
	1401	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1402	then
	1403	printf "\n +++ main program as well as executable defined"
	1404	locat=source; exit
	1405	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1406	then
	1407	do_compile=false
	1408	fi
	1409
	1410
[191]	1411	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1412	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1413	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1414	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1415	then
	1416	rm -rf SOURCES_FOR_RUN_$fname
	1417	mkdir SOURCES_FOR_RUN_$fname
	1418	fi
	1419
	1420
[1]	1421	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1422	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1423	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1424	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1425	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1426	then
	1427
[5]	1428	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
[1]	1429
[838]	1430	if [[ "$source_list" = LOCALLY_MODIFIED ]]
[1]	1431	then
	1432
[5]	1433	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1434	source_list=""
	1435	cd $source_path
	1436
	1437
	1438	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1439	if [[ ! -d .svn ]]
	1440	then
	1441	printf "\n\n +++ source directory"
	1442	printf "\n \"$source_path\" "
	1443	printf "\n is not under control of \"subversion\"."
[306]	1444	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1445	fi
	1446
	1447
	1448	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1449	Filenames=""
[69]	1450	svn status > tmp_mrun
	1451	while read line
[5]	1452	do
	1453	firstc=`echo $line \| cut -c1`
	1454	if [[ $firstc = M \|\| $firstc = "?" ]]
	1455	then
	1456	Name=`echo "$line" \| cut -c8-`
	1457	extension=`echo $Name \| cut -d. -f2`
	1458	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1459	then
	1460	Filenames="$Filenames "$Name
	1461	fi
	1462	fi
[69]	1463	done < tmp_mrun
[5]	1464
	1465
	1466	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1467	for dateiname in $Filenames
	1468	do
	1469	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1470	source_list=$source_list"$dateiname "
	1471	done
	1472
	1473	cd - > /dev/null
	1474
	1475
[1]	1476	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1477	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1478	# VORHANDEN
[5]	1479	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1480	then
	1481
	1482	cd $source_path
	1483
	1484	for filename in $source_list
	1485	do
	1486
	1487	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1488	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1489	then
	1490	printf "\n +++ source code file: $filename"
	1491	printf "\n must not contain (\"/\") "
	1492	locat=source; exit
	1493	fi
	1494
	1495	if [[ ! -f $filename ]]
	1496	then
	1497	printf "\n +++ source code file: $filename"
	1498	printf "\n does not exist"
	1499	locat=source; exit
	1500	else
	1501	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1502	fi
	1503
	1504	done
	1505
	1506	cd - > /dev/null
	1507
	1508	fi
	1509
	1510
	1511	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1512	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1513	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1514	if [[ $restart_run != true ]]
[1]	1515	then
	1516
	1517	if [[ ! -f "$source_path/$mainprog" ]]
	1518	then
	1519	printf "\n\n +++ main program: $mainprog"
	1520	printf "\n does not exist in source directory"
	1521	printf "\n \"$source_path\"\n"
	1522	locat=source; exit
	1523	else
	1524	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1525	then
	1526	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1527	source_list=${mainprog}" $source_list"
	1528	fi
	1529	fi
	1530	fi
	1531
	1532
[211]	1533	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1534	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1535	if [[ "$restart_run" != true ]]
	1536	then
	1537	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1538	if [[ ! -f $makefile ]]
	1539	then
	1540	printf "\n +++ file \"$makefile\" does not exist"
	1541	locat=make; exit
	1542	else
	1543	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1544	fi
	1545	fi
	1546
	1547
[1]	1548	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1549	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1550	then
	1551
	1552	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1553	if [[ ! -d $add_source_path ]]
	1554	then
	1555	printf "\n\n +++ WARNING: additional source code directory"
	1556	printf "\n \"$add_source_path\" "
	1557	printf "\n does not exist or is not a directory."
	1558	printf "\n No source code will be used from this directory!\n"
	1559	add_source_path=""
[931]	1560	if [[ $silent == false ]]
	1561	then
	1562	sleep 3
	1563	fi
[1]	1564	else
	1565
	1566	cd $add_source_path
[211]	1567	found=false
[1]	1568
	1569	Names=$(ls -1 *.f90 2>&1)
	1570	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1571	Names=$(ls -1 *.F90 2>&1)
	1572	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1573	Names=$(ls -1 *.F 2>&1)
	1574	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1575	Names=$(ls -1 *.f 2>&1)
	1576	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1577	Names=$(ls -1 *.c 2>&1)
	1578	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1579
	1580	cd - > /dev/null
	1581	cd SOURCES_FOR_RUN_$fname
	1582
[211]	1583	# COPY MAKEFILE IF EXISTING
	1584	if [[ -f $add_source_path/Makefile ]]
	1585	then
	1586	printf "\n\n *** user Makefile from directory"
	1587	printf "\n \"$add_source_path\" is used \n"
[931]	1588	if [[ $silent == false ]]
	1589	then
	1590	sleep 1
	1591	fi
[211]	1592	cp $add_source_path/Makefile .
	1593	fi
	1594
[1]	1595	for dateiname in $AddFilenames
	1596	do
	1597	if [[ -f $dateiname ]]
	1598	then
	1599	printf "\n +++ source code file \"$dateiname\" found in additional"
	1600	printf "\n source code directory \"$add_source_path\" "
[211]	1601	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1602	printf "\n from directory \"$source_path\"."
[1]	1603	locat=source; exit
	1604	fi
	1605
	1606	cp $add_source_path/$dateiname .
	1607	source_list="$source_list $dateiname"
	1608
[211]	1609	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1610	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1611	then
	1612	printf "\n\n +++ user file \"$dateiname\" "
	1613	printf "\n is not listed in Makefile \n"
	1614	locat=source; exit
	1615	else
	1616
[1]	1617	# Default User-Interface von der Liste entfernen, falls Datei
	1618	# ein User-Interface enthaelt
[211]	1619	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1620	# then
	1621	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1622	# then
	1623	# rm -rf user_interface.f90
	1624	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1625	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1626	# printf "\n since a user-interface is found in file"
	1627	# printf "\n \"$add_source_path/$dateiname\" \n"
	1628	# sleep 3
	1629	# else
	1630	if [[ $found = false ]]
[1]	1631	then
[211]	1632	found=true
	1633	printf "\n\n *** following user file(s) added to the"
	1634	printf " files to be translated:\n "
[1]	1635	fi
[211]	1636	printf "$dateiname "
[931]	1637	if [[ $silent == false ]]
	1638	then
	1639	sleep 0.5
	1640	fi
	1641
[1]	1642	fi
	1643	done
[211]	1644	[[ $found = true ]] && printf "\n"
[1]	1645	cd - > /dev/null
	1646	fi
	1647	fi
	1648
	1649
	1650	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1651	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1652	if [[ $restart_run != true && -n $package_list ]]
[1]	1653	then
	1654
	1655	cd $source_path
	1656
	1657	for package in $package_list
	1658	do
	1659
	1660	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1661
	1662	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1663	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1664	# LIEFERT
	1665	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1666
	1667
	1668	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1669	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1670	for source_list_name in $package_source_list
	1671	do
	1672	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1673	then
	1674
	1675	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1676	ending=`echo $source_list_name \| cut -f2 -d.`
	1677	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1678	then
	1679	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1680	source_list="$source_list $source_list_name"
	1681	fi
	1682	fi
	1683	done
	1684	done
	1685
	1686	cd - > /dev/null
	1687	fi
	1688
	1689
	1690	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1691	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1692	# if [[ "$restart_run" != true ]]
	1693	# then
	1694	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1695	# if [[ ! -f $makefile ]]
	1696	# then
	1697	# printf "\n +++ file \"$makefile\" does not exist"
	1698	# locat=make; exit
	1699	# else
	1700	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1701	# fi
	1702	# fi
[1]	1703
	1704	fi # do_compile=true
	1705
	1706
	1707	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1708	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1709	if [[ $do_compile = true ]]
	1710	then
	1711
	1712	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1713	# ZUSAMMENSETZEN
[83]	1714	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1715	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1716	then
[82]	1717	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1718	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1719	then
[82]	1720	cpp_options="$cpp_options -D__nec"
	1721	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1722	then
	1723	cpp_options="$cpp_options -D__lc"
[1]	1724	else
[82]	1725	cpp_options="$cpp_options -D__$localhost"
[1]	1726	fi
[83]	1727
	1728	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1729	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1730	then
[82]	1731	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1732	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1733	else
[82]	1734	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1735	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1736	fi
[83]	1737
	1738	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1739	if [[ -n $package_list ]]
	1740	then
	1741	for package in $package_list
	1742	do
	1743	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1744	then
	1745	if [[ $package != "dvrp_graphics+1PE" ]]
	1746	then
[82]	1747	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1748	else
[82]	1749	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1750	export use_seperate_pe_for_dvrp_output=true
	1751	fi
	1752	else
	1753	if [[ $package != "dvrp_graphics+1PE" ]]
	1754	then
[82]	1755	cpp_options="$cpp_options -D__$package"
[1]	1756	else
[82]	1757	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1758	export use_seperate_pe_for_dvrp_output=true
	1759	fi
	1760	fi
	1761	done
	1762	fi
[83]	1763
	1764	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1765	if [[ -n $cpp_opts ]]
	1766	then
	1767	for popts in $cpp_opts
	1768	do
[82]	1769	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1770	then
	1771	cpp_options="${cpp_options},-D__$popts=__$popts"
	1772	else
	1773	cpp_options="$cpp_options -D__$popts"
	1774	fi
[1]	1775	done
	1776	fi
	1777
	1778	else
	1779
	1780
	1781	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1782	if [[ $do_remote = false ]]
	1783	then
	1784	if [[ ! -f $executable ]]
	1785	then
	1786	printf "\n +++ executable file: $executable"
	1787	printf "\n does not exist"
	1788	locat=executable; exit
	1789	fi
	1790	fi
	1791	fi
	1792
	1793
	1794	# JOBMODUS FESTSTELLEN
[635]	1795	if [[ "$ENVIRONMENT" = BATCH ]]
[1]	1796	then
	1797	jobmo=BATCH
	1798	else
	1799	jobmo=INTERACTIVE
	1800	fi
	1801
	1802
[635]	1803	# no interactive runs on lctit
	1804	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
	1805	then
	1806	printf "\n +++ no interactive runs allowed on host \"$host\" "
	1807	printf "\n please submit batch job using mrun option \"-b\" \n"
	1808	locat=normal; exit
	1809	fi
	1810
	1811
[1]	1812	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1813	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1814	if [[ "$compiler_name" = "" ]]
	1815	then
[82]	1816
[220]	1817	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1818	locat=compiler_name; exit
	1819
[1]	1820	fi
	1821
	1822
[251]	1823	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	1824	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	1825
	1826
	1827
	1828	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	1829	kennung=$RANDOM
	1830	if [[ "$tmp_user_catalog" = "" ]]
	1831	then
[312]	1832	if [[ $localhost = ibmh ]]
[1]	1833	then
[312]	1834	tmp_user_catalog=$SCRATCH
[1]	1835	elif [[ $localhost = nech ]]
	1836	then
	1837	tmp_user_catalog=$WRKSHR
	1838	else
	1839	tmp_user_catalog=/tmp
	1840	fi
	1841	fi
	1842	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	1843
	1844
	1845	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	1846	# BESTIMMEN
	1847	if [[ "$tmp_data_catalog" = "" ]]
	1848	then
[622]	1849	if [[ $localhost = nech ]]
[1]	1850	then
	1851	tmp_data_catalog=$WRKSHR/mrun_restart_data
	1852	else
	1853	tmp_data_catalog=/tmp/mrun_restart_data
	1854	fi
	1855	fi
	1856
	1857
	1858	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	1859	# ERSETZEN
	1860	if [[ $do_remote = false && $do_compile = true ]]
	1861	then
	1862	eval fopts=\"$fopts\"
	1863	eval lopts=\"$lopts\"
	1864	fi
	1865
	1866
	1867
	1868	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	1869	fopts="$fopts $netcdf_inc $dvr_inc"
	1870	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	1871	ROPTS="$ropts"
[1090]	1872	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
	1873	# then
[1]	1874	XOPT="-X $numprocs"
[1090]	1875	# fi
[1]	1876
	1877
	1878
	1879	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	1880	# GRAMM BENOETIGT
	1881	done=false
	1882	while [[ $done = false ]]
	1883	do
	1884	cputime=$cpumax
	1885	if (( $cputime == 0 ))
	1886	then
[246]	1887	if [[ $do_batch = true ]]
	1888	then
	1889	printf "\n +++ cpu-time is undefined"
	1890	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	1891	printf "\n >>> "
	1892	read cputime 1>/dev/null 2>&1
	1893	else
	1894	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	1895	fi
[1]	1896	else
	1897	done=true
	1898	fi
	1899	cpumax=$cputime
	1900	done
	1901
	1902	(( minuten = cputime / 60 ))
	1903	(( sekunden = cputime - minuten * 60 ))
	1904
	1905
	1906	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	1907	if [[ $do_batch = true ]]
	1908	then
	1909	done=false
	1910	while [[ $done = false ]]
	1911	do
	1912	if (( memory == 0 ))
	1913	then
	1914	printf "\n +++ memory demand is undefined"
	1915	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	1916	printf "\n >>> "
	1917	read memory 1>/dev/null 2>&1
	1918	else
	1919	done=true
	1920	fi
	1921	done
	1922	fi
	1923
	1924
	1925	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	1926	if [[ $do_remote = true && -z $remote_username ]]
	1927	then
	1928	while [[ -z $remote_username ]]
	1929	do
	1930	printf "\n +++ username on remote host \"$host\" is undefined"
	1931	printf "\n >>> Please type username:"
	1932	printf "\n >>> "
	1933	read remote_username
	1934	done
	1935	mc="$mc -u$remote_username"
	1936	fi
	1937
[892]	1938	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
	1939	if [[ "$login_init_cmd" != "" ]]
	1940	then
	1941	export init_cmds="${login_init_cmd};"
	1942	fi
[221]	1943
[892]	1944
[493]	1945	# set module load command and export for subjob
	1946	if [[ "$modules" != "" ]]
	1947	then
[678]	1948	if [[ $host = lctit ]]
	1949	then
	1950	export module_calls=". $modules"
	1951	else
	1952	export module_calls="module load ${modules};"
	1953	fi
[493]	1954	fi
	1955
[683]	1956	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
[562]	1957	if [[ $host = lcsgib \|\| $host = lcsgih ]]
[555]	1958	then
	1959	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
	1960	then
[562]	1961	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
[555]	1962	fi
[721]	1963	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
	1964	# then
	1965	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
	1966	# echo "*** module_calls = $module_calls"
	1967	# fi
[555]	1968	fi
[493]	1969
[555]	1970
[221]	1971	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	1972	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	1973	then
[493]	1974	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
	1975	then
	1976	mpilib=mpt
	1977	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
	1978	then
	1979	mpilib=mvapich
[738]	1980	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
	1981	then
	1982	mpilib=impi
[493]	1983	fi
[221]	1984	fi
	1985
	1986
	1987
[1]	1988	###########################################################################
	1989	# HEADER-AUSGABE
	1990	###########################################################################
	1991
	1992
	1993	calltime=$(date)
	1994	printf "\n"
	1995	# [[ $silent = false ]] && clear
	1996	printf "#--------------------------------------------------------------# \n"
	1997	printf "\| $version$calltime \| \n"
	1998	printf "\| \| \n"
	1999	spalte1="called on:"; spalte2=$localhost_realname
	2000	printf "\| $spalte1$spalte2 \| \n"
	2001	if [[ $local_compile = false ]]
	2002	then
	2003	if [[ $do_remote = true ]]
	2004	then
	2005	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2006	else
	2007	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2008	fi
	2009	else
	2010	spalte1="compiling test only!"; spalte2=""
	2011	fi
	2012	printf "\| $spalte1$spalte2 \| \n"
	2013	if [[ -n $numprocs ]]
	2014	then
	2015	spalte1="number of PEs:"; spalte2=$numprocs
	2016	printf "\| $spalte1$spalte2 \| \n"
	2017	fi
	2018	if [[ -n $tasks_per_node ]]
	2019	then
	2020	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	2021	printf "\| $spalte1$spalte2 \| \n"
	2022	fi
[759]	2023	if [[ $maximum_parallel_io_streams != $numprocs ]]
	2024	then
	2025	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
	2026	printf "\| $spalte1$spalte2 \| \n"
	2027	fi
[622]	2028	if [[ $use_openmp = true ]]
[1]	2029	then
	2030	spalte1="threads per task:"; spalte2="$threads_per_task"
	2031	printf "\| $spalte1$spalte2 \| \n"
	2032	fi
	2033	printf "\| \| \n"
	2034	if [[ $do_compile = true ]]
	2035	then
[475]	2036	if [[ "$mopts" != "" ]]
	2037	then
[493]	2038	spalte1="make options:"; spalte2=$mopts
[475]	2039	printf "\| $spalte1$spalte2 \| \n"
	2040	zeile=$(echo "$mopts" \| cut -c41-)
	2041	while [[ "$zeile" != "" ]]
	2042	do
	2043	spalte1=""
	2044	spalte2=$zeile
	2045	printf "\| $spalte1$spalte2 \| \n"
	2046	zeile=$(echo "$zeile" \| cut -c41-)
	2047	done
	2048	fi
	2049
[493]	2050	spalte1="cpp directives:"; spalte2=$cpp_options
[1]	2051	printf "\| $spalte1$spalte2 \| \n"
[82]	2052	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2053	while [[ "$zeile" != "" ]]
	2054	do
	2055	spalte1=""
	2056	spalte2=$zeile
	2057	printf "\| $spalte1$spalte2 \| \n"
	2058	zeile=$(echo "$zeile" \| cut -c41-)
	2059	done
	2060
[493]	2061	spalte1="compiler options:"; spalte2="$fopts"
[1]	2062	printf "\| $spalte1$spalte2 \| \n"
[82]	2063	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2064	while [[ "$zeile" != "" ]]
	2065	do
	2066	spalte1=""
	2067	spalte2=$zeile
	2068	printf "\| $spalte1$spalte2 \| \n"
	2069	zeile=$(echo "$zeile" \| cut -c41-)
	2070	done
	2071
[493]	2072	spalte1="linker options:"; spalte2=$lopts
[1]	2073	printf "\| $spalte1$spalte2 \| \n"
[82]	2074	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2075	while [[ "$zeile" != "" ]]
	2076	do
	2077	spalte1=""
	2078	spalte2=$zeile
	2079	printf "\| $spalte1$spalte2 \| \n"
	2080	zeile=$(echo "$zeile" \| cut -c41-)
	2081	done
	2082
[493]	2083	spalte1="modules to be load:"; spalte2=$modules
	2084	printf "\| $spalte1$spalte2 \| \n"
	2085	zeile=$(echo "$modules" \| cut -c41-)
	2086	while [[ "$zeile" != "" ]]
	2087	do
	2088	spalte1=""
	2089	spalte2=$zeile
	2090	printf "\| $spalte1$spalte2 \| \n"
	2091	zeile=$(echo "$zeile" \| cut -c41-)
	2092	done
	2093
[1]	2094	spalte1="main program":; spalte2=$mainprog
	2095	printf "\| $spalte1$spalte2 \| \n"
	2096	else
	2097	spalte1=executable:; spalte2=$executable
	2098	printf "\| $spalte1$spalte2 \| \n"
	2099	fi
	2100	printf "\| \| \n"
	2101	spalte1="base name of files":; spalte2=$fname
	2102	printf "\| $spalte1$spalte2 \| \n"
	2103	if [[ $fname != $afname ]]
	2104	then
	2105	spalte1="base name of input files":; spalte2=$afname
	2106	printf "\| $spalte1$spalte2 \| \n"
	2107	fi
	2108	spalte1="INPUT control list":; spalte2=$input_list
	2109	printf "\| $spalte1$spalte2 \| \n"
	2110	spalte1="OUTPUT control list":; spalte2=$output_list
	2111	printf "\| $spalte1$spalte2 \| \n"
	2112
	2113	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2114	then
	2115	spalte1="memory demand / PE":; spalte2="$memory MB"
	2116	printf "\| $spalte1$spalte2 \| \n"
	2117	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2118	printf "\| $spalte1$spalte2 \| \n"
	2119	fi
	2120
	2121	if [[ $do_compile = true ]]
	2122	then
	2123	printf "\| \| \n"
	2124	printf "\| Files to be compiled: \| \n"
	2125	zeile=$source_list
	2126	while [[ "$zeile" != "" ]]
	2127	do
	2128	spalte3=$zeile
	2129	printf "\| $spalte3 \| \n"
	2130	zeile=$(echo "$zeile" \| cut -c61-)
	2131	done
	2132	fi
	2133	printf "#--------------------------------------------------------------#"
	2134
	2135
	2136
	2137	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2138	if [[ $do_trace = true ]]
	2139	then
	2140	(( i = 0 ))
	2141	while (( i < iin ))
	2142	do
	2143	(( i = i + 1 ))
	2144	if (( i == 1 ))
	2145	then
	2146	printf "\n\n >>> INPUT-file assignments:\n"
	2147	fi
	2148	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2149	done
	2150	(( i = 0 ))
	2151	while (( i < iout ))
	2152	do
	2153	(( i = i + 1 ))
	2154	if (( i == 1 ))
	2155	then
	2156	printf "\n\n >>> OUTPUT-file assignments:\n"
	2157	fi
	2158	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2159	done
	2160	(( i = 0 ))
	2161	while (( i < iic ))
	2162	do
	2163	(( i = i + 1 ))
	2164	if (( i == 1 ))
	2165	then
	2166	printf "\n\n >>> INPUT-commands:\n"
	2167	fi
	2168	printf "\n ${in_command[$i]}"
	2169	done
	2170	(( i = 0 ))
	2171	while (( i < ioc ))
	2172	do
	2173	(( i = i + 1 ))
	2174	if (( i == 1 ))
	2175	then
	2176	printf "\n\n >>> OUTPUT-commands:\n"
	2177	fi
	2178	printf "\n ${out_command[$i]}"
	2179	done
	2180	fi
	2181
	2182
	2183	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2184	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2185	then
	2186	antwort=dummy
	2187	printf "\n\n"
	2188	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2189	do
	2190	printf " >>> everything o.k. (y/n) ? "
	2191	read antwort
	2192	done
	2193	if [[ $antwort = n \|\| $antwort = N ]]
	2194	then
	2195	locat=user_abort; (( iec = 0 )); exit
	2196	fi
	2197	if [[ $do_batch = true ]]
	2198	then
	2199	printf " >>> batch-job will be created and submitted"
	2200	else
	2201	if [[ $local_compile = false ]]
	2202	then
	2203	printf " >>> MRUN will now continue to execute on this machine"
	2204	else
	2205	printf " >>> a test compilation will now be carried out on this machine"
	2206	fi
	2207	fi
	2208	fi
	2209
[807]	2210	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
[841]	2211
	2212	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
	2213	check_depository="${working_directory}/trunk/UTIL"
	2214	check_sources="${working_directory}/tmp_check_namelist_files"
[818]	2215	skip_check=false
[841]	2216
	2217	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
[920]	2218	if [[ ! -f $check_depository/check_namelist_files.tar ]]
[841]	2219	then
[892]	2220	skip_check=true
[920]	2221	reason="run on remote host or parameter file check has not been compiled."
	2222	fi
	2223	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
	2224	then
	2225	skip_check=true
[892]	2226	reason="parameter file check has not been compiled."
	2227	fi
[841]	2228
[892]	2229	#CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
	2230	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
	2231	then
	2232	skip_check=true
	2233	reason="serial run."
[841]	2234	fi
	2235
	2236	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
[1083]	2237	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST DIFFERS FROM THE COMPILER ON THE REMOTE HOST
[892]	2238	if [[ $check_namelist_files == false ]]
[807]	2239	then
[892]	2240	skip_check=true
	2241	reason="-z option set."
[815]	2242	fi
[892]	2243
	2244	if [[ $fromhost != $localhost ]]
[815]	2245	then
[892]	2246	skip_check=true
	2247	reason="submitting host is local host."
	2248	fi
[1]	2249
[892]	2250	if [[ $run_coupled_model == true ]]
	2251	then
	2252	skip_check=true
	2253	reason="coupled run."
	2254	fi
[1]	2255
[892]	2256	if [[ $restart_run == true ]]
	2257	then
	2258	skip_check=true
	2259	reason="restart run."
[807]	2260
[892]	2261	fi
[807]	2262
[892]	2263	#SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
[920]	2264	((last_char = `echo $filename_input \| wc -c` - 1))
	2265	last_char=`echo $filename_input \|cut -c$last_char`
[892]	2266	if [[ "$last_char" == "f" ]]
	2267	then
	2268	skip_check=true
[1069]	2269	reason="restart run."
[892]	2270	fi
[807]	2271
[892]	2272	if [[ $skip_check == false ]]
	2273	then
[807]	2274
[892]	2275	tmp_check=${working_directory}/tmp_check
[841]	2276
[818]	2277	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
	2278	# NOT NECESSARILY REQUIRED
	2279	line=""
	2280	found=false
[892]	2281	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
[818]	2282	while read line1
	2283	do
	2284	line="$line1"
	2285	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2286	then
	2287	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
	2288	found=true
	2289	fi
	2290	done < $tmp_check
[807]	2291
[818]	2292	if [[ $found = false ]]
	2293	then
	2294	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
	2295	fi
	2296
[807]	2297	rm -rf ${working_directory}/tmp_check
	2298
	2299	# CHECK IF THE A P3DF FILE MUST BE CHECKED
	2300	for item in $input_list
	2301	do
[892]	2302	if [[ "$item" == "restart" ]]
[807]	2303	then
	2304	check_restart=1
	2305	else
	2306	check_restart=0
	2307	fi
	2308	done
	2309
	2310	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
[920]	2311	if [[ (! -f $filename_input) && ( "$filename_input" != "") ]]
[807]	2312	then
[920]	2313	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
[807]	2314	locat=check_namelist; exit
	2315	fi
	2316
	2317	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
	2318	if [[ $check_restart == 1 ]]
	2319	then
[892]	2320
	2321
	2322
[920]	2323	filenamef="${filename_input}f"
[892]	2324	if [[ ! -f $filenamef ]]
[807]	2325	then
[892]	2326	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
[807]	2327	check_restart=0
	2328	answer=dummy
	2329	printf "\n\n"
	2330
[818]	2331	if [[ $silent == false ]]
[807]	2332	then
[818]	2333	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2334	do
	2335	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2336	read answer
	2337	done
	2338	if [[ $answer = a \|\| $answer = A ]]
	2339	then
	2340	printf "\n +++ Aborting...."
	2341	locat=normal; exit
	2342	fi
[807]	2343	fi
	2344	else
	2345	check_restart=1
	2346	fi
	2347	fi
	2348
	2349	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
	2350	mkdir $check_sources
	2351	cd $check_sources
	2352
[892]	2353
[807]	2354	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
[892]	2355	if [[ -d $add_source_path ]]
[807]	2356	then
	2357	printf "\n\n *** copying files from $check_depository"
	2358	cp $check_depository/check_namelist_files.tar ./
	2359
	2360	printf "\n\n *** untar of makefile and source files in $check_sources"
	2361	tar -xf check_namelist_files.tar > /dev/null 2>&1
	2362
	2363	printf "\n\n *** adding user code."
[892]	2364	cp $add_source_path/* ./
[807]	2365	touch check_namelist_files.f90
	2366
	2367	# GET COMPILER OPTIONS AND PERFORM MAKE
	2368	printf "\n\n *** compiling code if necessary...\n"
[1045]	2369
	2370	# workaround for batch jobs on local machine (lcxe6)
	2371	if [[ $do_batch == true && $do_remote == false ]]
	2372	then
	2373	eval $init_cmds
	2374	fi
	2375
[1083]	2376	# GET CHECK OPTIONS
	2377	line=""
	2378	found=false
	2379
	2380	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
	2381
	2382	while read line1
	2383	do
	2384
	2385	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
	2386	then
	2387	line="$line1"
	2388	fi
	2389
	2390	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2391	then
	2392	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
	2393	line="$line "
	2394	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
	2395	found=true
	2396	fi
	2397
	2398	done < $tmp_check
	2399	copts_check="$copts_check -D__check -D__parallel"
	2400
[807]	2401	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
	2402
	2403	# GET MAKE OUTPUT
	2404	if [[ $? != 0 ]]
	2405	then
[815]	2406	printf "\n +++ error during make."
	2407	answer=dummy
	2408	printf "\n\n"
[818]	2409	if [[ $silent == false ]]
[815]	2410	then
[818]	2411	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2412	do
	2413	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2414	read answer
	2415	done
	2416	if [[ $answer = a \|\| $answer = A ]]
	2417	then
	2418	printf "\n +++ Aborting..."
	2419	rm -rf $check_sources
	2420	locat=normal; exit
	2421	else
	2422	skip_check=true
	2423	fi
[815]	2424	else
	2425	skip_check=true
	2426	fi
[807]	2427	fi
	2428	else
	2429	cp $PALM_BIN/check_namelist_files.x ./
	2430	fi
	2431
[920]	2432	cp $filename_input ./PARIN
[807]	2433	if [[ $check_restart == 1 ]]
	2434	then
[892]	2435	cp $filenamef ./PARINF
[807]	2436	fi
	2437
[892]	2438	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
[818]	2439	then
	2440	printf "\n *** adding topography data"
[892]	2441	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
[818]	2442
	2443	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
	2444	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
	2445	# WHICH REQUIRE SUFFICIENT MEMORY
	2446	ulimit -s unlimited
	2447	fi
	2448
[807]	2449	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
	2450	cat > ENVPAR << %%END%%
[823]	2451	&envpar run_identifier = '$fname', host = '$host',
[807]	2452	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2453	maximum_parallel_io_streams = $maximum_parallel_io_streams,
	2454	maximum_cpu_time_allowed = ${cpumax}.,
	2455	revision = '$global_revision',
	2456	local_dvrserver_running = $local_dvrserver_running /
	2457
	2458	%%END%%
	2459
	2460	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
[818]	2461	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
[807]	2462	printf "\n +++ WARNING: check_namelist_files.x not found."
	2463	answer=dummy
	2464	printf "\n\n"
[818]	2465
	2466	if [[ $silent == false ]]
[807]	2467	then
[818]	2468	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2469	do
	2470	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2471	read answer
	2472	done
	2473	if [[ $answer = a \|\| $answer = A ]]
	2474	then
	2475	printf "\n +++ Aborting..."
	2476	rm -rf $check_sources
	2477	locat=normal; exit
	2478	else
[1069]	2479	printf "\n *** skipping parameter file check."
[818]	2480
	2481	fi
	2482	fi
	2483
[815]	2484	elif [[ $skip_check == false ]]
	2485	then
[807]	2486	# STARTING THE PARAMETER FILE CHECK
	2487	printf "\n\n *** starting parameter file check..."
	2488
	2489	# CHECKING THE P3D FILE
[920]	2490	printf "\n\n (1) checking $filename_input"
[931]	2491	echo "$numprocs 0 0" > VARIN
[807]	2492	errors=`./check_namelist_files.x < VARIN 2>&1`
	2493
	2494	check_error=false
	2495	if [[ "$errors" == "" ]]
	2496	then
	2497	printf " --> o.k."
	2498	else
	2499	printf " --> failed."
	2500	check_error=true
	2501	printf "\n\n $errors"
	2502	fi
	2503
	2504	# CHECKING THE PD3F FILE IF NECESSARY
	2505	if [[ $check_restart == 1 && $check_error == false ]]
	2506	then
[892]	2507	printf "\n\n (2) checking $filenamef"
[807]	2508
	2509	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
	2510	found=false
	2511	cat PARINF\|while read line
	2512	do
	2513	line=$(echo $line\|sed 's/ //g')
	2514	if [[ $line == "&inipar" ]]
	2515	then
	2516	start_search=true
	2517	fi
	2518
	2519	if [[ $start_search == true ]]
	2520	then
	2521	if [[ $line == "initializing_actions='read_restart_data'" ]]
	2522	then
	2523	found=true
	2524	break
	2525	fi
	2526	fi
	2527
	2528	if [[ $line == "/" ]]
	2529	then
	2530	start_search=false
	2531	fi
	2532
	2533	done
	2534
	2535	if [[ $found = false ]]
	2536	then
	2537	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
	2538	printf "\n in &inipar list in $fname$p3df_suffix."
	2539	rm -rf $check_sources
	2540	locat=check_namelist; exit
	2541	fi
	2542
[931]	2543	# READ max_user_pr FROM FILES
	2544	if [[ -f parin_for_check ]]
	2545	then
	2546	read max_pr_user < parin_for_check
	2547	else
	2548	max_user_pr=0
	2549	fi
	2550
	2551	echo "$numprocs 1 $max_pr_user" > VARIN
[807]	2552	errors=`./check_namelist_files.x < VARIN 2>&1`
	2553
	2554	if [[ "$errors" == "" ]]
	2555	then
	2556	printf " --> o.k."
	2557	else
	2558	printf " --> failed."
	2559	check_error=true
	2560	printf "\n\n $errors"
	2561	fi
	2562	fi
	2563
	2564	# REPORT ERRORS AND CONTINUE/EXIT
	2565	if [[ $check_error == true ]]
	2566	then
	2567	printf "\n +++ errors found in the parameter file!\n"
	2568	answer=dummy
	2569	printf "\n\n"
	2570
	2571	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2572	do
	2573	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2574	read answer
	2575	done
	2576
	2577	if [[ $answer = a \|\| $answer = A ]]
	2578	then
	2579	printf "\n +++ Aborting..."
	2580	rm -rf $check_sources
	2581	locat=normal; exit
	2582	fi
	2583	else
	2584	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
	2585	fi
	2586	rm -rf $check_sources
	2587	fi
	2588	else
[892]	2589	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
[807]	2590	fi
	2591
[818]	2592	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
	2593	rm -rf $check_sources
[807]	2594	cd $working_directory
	2595
[892]	2596
[807]	2597	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2598	# CHENDE AKTIONEN DURCHGEFUEHRT
[1]	2599	if [[ $do_batch = false ]]
	2600	then
	2601
	2602
	2603	# TEMPORAEREN KATALOG ERZEUGEN
	2604	mkdir -p $TEMPDIR
	2605	chmod go+rx $TEMPDIR
	2606	tmpcreate=true
	2607
[493]	2608	# set striping on lustre file system
	2609	# if [[ $localhost = lcsgih ]]
	2610	# then
	2611	# lfs setstripe -s 8192k -c 16 $TEMPDIR
	2612	# lfs getstripe $TEMPDIR
	2613	# fi
[1]	2614
[493]	2615
[1]	2616	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2617	# TEMPORAERES VERZEICHNIS KOPIEREN
	2618	if [[ $do_compile = true ]]
	2619	then
	2620
	2621	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2622	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2623	if [[ $localhost = nech ]]
	2624	then
	2625	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2626	if mkdir -p $TEMPDIR_COMPILE
	2627	then
	2628	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2629	printf "\n is generated as temporary directory for cross compiling\n"
	2630	else
	2631	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2632	printf "\n needed for cross compilation failed"
	2633	locat=compile
	2634	exit
	2635	fi
	2636	else
	2637	TEMPDIR_COMPILE=$TEMPDIR
	2638	fi
	2639
	2640
[82]	2641	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2642	line=""
	2643	grep "%depository_path" $config_file > tmp_mrun
	2644	while read line
	2645	do
	2646	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2647	then
	2648	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2649	then
[82]	2650	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2651	fi
[82]	2652	fi
	2653	done < tmp_mrun
[1]	2654
[82]	2655	line=""
	2656	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2657	while read line
	2658	do
	2659	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2660	then
[211]	2661	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2662	then
	2663	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2664	fi
[1]	2665	fi
[82]	2666	done < tmp_mrun
[1]	2667
[82]	2668	if [[ "$local_depository_path" = "" ]]
	2669	then
	2670	if [[ "$global_depository_path" != "" ]]
[1]	2671	then
[82]	2672	local_depository_path=$global_depository_path
[1]	2673	else
[82]	2674	printf "\n\n +++ no depository path found in configuration file"
	2675	printf "\n for local host \"$localhost\" "
	2676	printf "\n please set \"\%depository_path\" in configuration file\n"
	2677	locat=config_file; exit
[1]	2678	fi
[82]	2679	fi
	2680	eval local_depository_path=$local_depository_path
[215]	2681	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2682	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2683
[215]	2684
[82]	2685	basename=`print $mainprog \| cut -f1 -d"."`
	2686	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2687	if [[ ! -f $make_depository ]]
	2688	then
	2689	printf "\n"
	2690	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2691	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2692	else
	2693	cp $make_depository $TEMPDIR_COMPILE
[1]	2694	cd $TEMPDIR_COMPILE
[82]	2695	tar -xf $make_depository > /dev/null 2>&1
[1]	2696	cd - > /dev/null
	2697	fi
[82]	2698
	2699	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2700
[1]	2701	else
[475]	2702
[1]	2703	cp $executable ${TEMPDIR}/a.out
[475]	2704
[1]	2705	fi
	2706
	2707
	2708	# WECHSEL IN TEMPORAEREN KATALOG
[475]	2709	cd $TEMPDIR
[1]	2710	printf "\n *** changed to temporary directory: $TEMPDIR"
	2711
	2712
	2713	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2714	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2715	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2716	# ERMITTELN
	2717	(( i = 0 ))
	2718	while (( i < iout ))
	2719	do
	2720	(( i = i + 1 ))
	2721	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2722	then
	2723	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2724	else
	2725	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2726	fi
	2727	done
	2728
	2729
	2730	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2731	if [[ $do_compile = true ]]
	2732	then
	2733
	2734
	2735	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2736	printf "\n\n\n *** compilation starts \n$striche\n"
	2737	printf " *** compilation with make using following options:\n"
[211]	2738	printf " make depository: $make_depository"
[475]	2739	if [[ "$mopts" != "" ]]
	2740	then
	2741	printf " make options: $mopts\n"
	2742	fi
[82]	2743	printf " compilername: $compiler_name\n"
[475]	2744	printf " compiler options: $fopts\n"
[493]	2745	printf " preprocessor directives: $cpp_options \n"
	2746	printf " linker options: $lopts \n"
	2747	if [[ "$modules" != "" ]]
	2748	then
	2749	printf " modules to be load: $modules \n"
	2750	fi
[82]	2751	printf " source code files: $source_list \n"
	2752
	2753	if [[ $localhost = nech ]]
[1]	2754	then
[892]	2755	# init_cmds was ". /SX/opt/etc/initsx.sh;"
[1094]	2756	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[82]	2757	cp $TEMPDIR_COMPILE/a.out .
	2758	[[ $? != 0 ]] && compile_error=true
	2759	rm -rf $TEMPDIR_COMPILE
[312]	2760	elif [[ $localhost = ibmh ]]
	2761	then
[325]	2762	printf " compiler is called via ssh on \"plogin1\" \n"
[1094]	2763	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[312]	2764	[[ ! -f a.out ]] && compile_error=true
	2765	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[197]	2766	elif [[ $localhost = lcsgib ]]
	2767	then
[540]	2768	printf " compiler is called via ssh on \"bicegate0\" \n"
[1094]	2769	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2770	[[ ! -f a.out ]] && compile_error=true
	2771	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2772	elif [[ $localhost = lcsgih ]]
	2773	then
[738]	2774	printf " compiler is called via ssh on \"hicegate0\" \n"
[1094]	2775	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2776	[[ ! -f a.out ]] && compile_error=true
	2777	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[755]	2778	elif [[ $localhost = lcflow ]]
	2779	then
	2780	printf " compiler is called via ssh on \"flow\" \n"
[1094]	2781	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[755]	2782	[[ ! -f a.out ]] && compile_error=true
	2783	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2784	else
[920]	2785	[[ "$init_cmds" != "" ]] && eval $init_cmds
[493]	2786	[[ "$module_calls" != "" ]] && eval $module_calls
[475]	2787	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
[807]	2788
[82]	2789	fi
[1]	2790
	2791	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2792	then
	2793	printf "\n +++ error occured while compiling or linking"
	2794	locat=compile
[181]	2795
[182]	2796	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2797	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2798	# then
[181]	2799	exit
[197]	2800	# else
	2801	# locat=normal
	2802	# fi
[1]	2803	else
	2804	printf "$striche\n *** compilation finished \n"
	2805	fi
	2806	fi
	2807
	2808
	2809	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2810	if [[ $local_compile = true ]]
	2811	then
	2812	cd $HOME
	2813	rm -rf $TEMPDIR
	2814	locat=local_compile; exit
	2815	fi
	2816
	2817
	2818	# BEREITSTELLEN DER INPUT-DATEIEN
	2819	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2820	(( i = 0 ))
	2821	while (( i < iin ))
	2822	do
	2823	(( i = i + 1 ))
	2824	if (( i == 1 ))
	2825	then
	2826	printf "\n\n *** providing INPUT-files:\n$striche"
	2827	fi
	2828
	2829
	2830	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2831	if [[ "${transin[$i]}" = unavailable ]]
	2832	then
	2833	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2834	then
	2835	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2836	printf "\n is not available!"
	2837	else
	2838	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2839	printf "\n is not available!"
	2840	fi
	2841	continue
	2842	fi
	2843
	2844	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2845	files_for_pes=false; datentyp=file
	2846	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2847	then
	2848	files_for_pes=true; datentyp=directory
	2849	actionin[$i]=""
	2850	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2851	then
	2852	actionin[$i]=""
	2853	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2854	then
	2855	files_for_pes=true; datentyp=directory
	2856	actionin[$i]="ar"
	2857	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2858	then
	2859	actionin[$i]="ar"
	2860	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2861	then
	2862	files_for_pes=true; datentyp=directory
	2863	actionin[$i]="fl"
	2864	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2865	then
	2866	actionin[$i]="fl"
	2867	fi
	2868
	2869	if [[ $files_for_pes = true ]]
	2870	then
	2871	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2872	else
	2873	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2874	fi
	2875
	2876	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2877	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2878	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2879	# SERVER ZU HOLEN
	2880	if [[ "${actionin[$i]}" = fl ]]
	2881	then
	2882	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2883	if [[ $files_for_pes = false ]]
	2884	then
	2885	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2886	then
	2887	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2888	got_tmp[$i]=true
	2889	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2890	then
	2891	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2892	printf "\n *** trying to use backup copy in \"$WORK\" "
	2893	cp $WORK/${frelin[$i]} ${localin[$i]}
	2894	else
	2895	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2896	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2897	printf "\n *** trying to get copy from archive"
	2898	actionin[$i]=ar
	2899	fi
	2900	else
	2901	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2902	then
	2903	mkdir ${localin[$i]}
[149]	2904	cd $tmp_data_catalog/${frelin[$i]}
	2905	for file in $(ls *)
	2906	do
	2907	ln $file $TEMPDIR/${localin[$i]}
	2908	done
	2909	cd $TEMPDIR
[1]	2910	got_tmp[$i]=true
	2911	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2912	then
	2913	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2914	printf "\n *** trying to use backup copy in \"$WORK\" "
	2915	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2916	else
	2917	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2918	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2919	printf "\n *** trying to get copy from archive"
	2920	actionin[$i]=ar
	2921	fi
	2922	fi
	2923	fi
	2924
	2925
	2926	# DATEI LIEGT AUF ARCHIV-SERVER
	2927	if [[ "${actionin[$i]}" = ar ]]
	2928	then
	2929
	2930	if [[ $files_for_pes = false ]]
	2931	then
	2932	printf "\n file will be restored from archive-system ($archive_system)!"
	2933	else
	2934	printf "\n directory will be restored from archive-system ($archive_system)!"
	2935	fi
	2936
	2937	file_restored=false
	2938
	2939	if [[ $archive_system = asterix ]]
	2940	then
	2941	do_stagein=true
	2942	(( stagein_anz = 0 ))
	2943	while [[ $do_stagein = true ]]
	2944	do
	2945	if [[ $files_for_pes = false ]]
	2946	then
	2947	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2948	else
	2949	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2950	fi
	2951	cat STAGEIN_OUTPUT
	2952	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2953	then
	2954	file_restored=true
	2955	do_stagein=false
	2956	else
	2957	(( stagein_anz = stagein_anz + 1 ))
	2958	if (( stagein_anz == 10 ))
	2959	then
	2960	printf "\n +++ stagein stoped after 10 tries"
	2961	locat=stage
	2962	exit
	2963	fi
	2964	printf "\n +++ restoring from archive failed, trying again:"
	2965	sleep 900
	2966	fi
	2967	done
	2968	elif [[ $archive_system = DMF ]]
	2969	then
	2970	if [[ $files_for_pes = false ]]
	2971	then
	2972	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	2973	locat=DMF
	2974	exit
	2975	else
	2976	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	2977	cp -r $ARCHIVE/${frelin[$i]} $PWD
	2978	file_restored=true
	2979	fi
	2980	elif [[ $archive_system = tivoli ]]
	2981	then
	2982	if [[ $files_for_pes = false ]]
	2983	then
[399]	2984	if [[ $localhost = lcsgih ]]
[1]	2985	then
[1094]	2986	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2987	else
[1094]	2988	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2989	fi
	2990	else
	2991	(( inode = 0 ))
	2992	while (( inode < nodes ))
	2993	do
[399]	2994	if [[ $localhost = lcsgih ]]
[1]	2995	then
[1094]	2996	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2997	else
[1094]	2998	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2999	fi
	3000	(( inode = inode + 1 ))
	3001	done
	3002	fi
	3003	file_restored=true
	3004	elif [[ $archive_system = ut ]]
	3005	then
	3006	if [[ $files_for_pes = false ]]
	3007	then
	3008	cp $UT/${frelin[$i]} .
	3009	else
	3010	(( inode = 0 ))
	3011	while (( inode < nodes ))
	3012	do
	3013	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	3014	(( inode = inode + 1 ))
	3015	done
	3016	fi
	3017	file_restored=true
	3018	else
	3019	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	3020	locat=rearchive
	3021	exit
	3022	fi
	3023
	3024	if [[ $file_restored = true ]]
	3025	then
	3026
	3027	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	3028	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	3029	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	3030	if [[ $files_for_pes = false ]]
	3031	then
	3032	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	3033	else
	3034	mkdir $tmp_data_catalog/${frelin[$i]}
	3035	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	3036	fi
	3037	got_tmp[$i]=true
	3038
	3039	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	3040	mv ${frelin[$i]} ${localin[$i]}
	3041
	3042	fi
	3043	fi
	3044
	3045
	3046	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	3047	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	3048	then
	3049
	3050	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	3051	then
	3052
	3053	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	3054	printf "\n file will be provided for $numprocs processors"
	3055	mkdir ${localin[$i]}
	3056	ival=$numprocs
	3057	(( ii = 0 ))
	3058	while (( ii <= ival-1 ))
	3059	do
	3060	if (( ii < 10 ))
	3061	then
	3062	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	3063	elif (( ii < 100 ))
	3064	then
	3065	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	3066	elif (( ii < 1000 ))
	3067	then
	3068	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	3069	else
	3070	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	3071	fi
	3072	(( ii = ii + 1 ))
	3073	done
	3074
	3075	else
	3076
	3077	if [[ $files_for_pes = true ]]
	3078	then
	3079
	3080	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	3081	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	3082	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	3083	# PER MOVE UMBENANNT WERDEN
	3084	printf "\n providing $numprocs files for the respective processors"
	3085	mkdir ${localin[$i]}
[183]	3086	if [[ $link_local_input = true ]]
	3087	then
	3088	printf " using ln -f\n"
	3089	cd ${absnamein[$i]}
	3090	for file in $(ls *)
	3091	do
	3092	ln -f $file ${localin[$i]}
	3093	done
	3094	cd $TEMPDIR
	3095	fi
	3096	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	3097	if [[ ! -f "${localin[$i]}/_0000" ]]
	3098	then
	3099	if [[ $link_local_input = true ]]
	3100	then
	3101	printf " ln failed for .../_0000, using cp...\n"
	3102	fi
	3103	cp -r ${absnamein[$i]}/* ${localin[$i]}
	3104	fi
[1]	3105
	3106	else
	3107	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	3108	if [[ $link_local_input = true ]]
	3109	then
	3110	printf " using ln -f\n"
	3111	ln -f ${absnamein[$i]} ${localin[$i]}
	3112	fi
	3113	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	3114	if [[ ! -f "${localin[$i]}" ]]
	3115	then
	3116	if [[ $link_local_input = true ]]
	3117	then
	3118	printf " ln failed, using cp...\n"
	3119	fi
	3120	cp ${absnamein[$i]} ${localin[$i]}
	3121	fi
[1]	3122	fi
	3123	fi
	3124	fi
	3125
	3126	done
	3127	if (( i != 0 ))
	3128	then
	3129	printf "\n$striche\n *** all INPUT-files provided \n"
	3130	fi
	3131
	3132
	3133	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	3134	(( i = 0 ))
	3135	while (( i < iic ))
	3136	do
	3137	(( i = i + 1 ))
	3138	if (( i == 1 ))
	3139	then
	3140	printf "\n\n *** execution of INPUT-commands:\n$striche"
	3141	fi
	3142	printf "\n >>> ${in_command[$i]}"
	3143	eval ${in_command[$i]}
	3144	if (( i == iic ))
	3145	then
	3146	printf "\n$striche\n"
	3147	fi
	3148	done
	3149
	3150
	3151	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	3152	cpurest=${cpumax}.
	3153
	3154
[260]	3155	# START DVR STREAMING SERVER
	3156	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3157	then
	3158	if [[ "$dvr_server" != "" ]]
	3159	then
	3160
	3161	printf "\n\n *** preparing the dvr streaming server configuration file"
	3162
	3163	# Check, if a dvr server is already running
	3164	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	3165	if [[ "$running_dvrserver_id" != "" ]]
	3166	then
	3167
[261]	3168	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	3169	printf "\n This server is used instead starting a new one!"
[261]	3170	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	3171
	3172	else
	3173
	3174	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	3175	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	3176	then
	3177	cp ${PALM_BIN}/.dvrserver.config .
	3178
	3179	# Entering the BASEDIR, UID and GID into this file
	3180	user_id=`id -u`
	3181	group_id=`id -g`
	3182	# & is needed as seperator, because TEMPDIR contains /
	3183	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	3184	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	3185	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	3186	mv .dvrserver.3 .dvrserver.config
	3187	rm .dvrserver.1 .dvrserver.2
	3188
	3189	# Start dvr server in background, get his id and print on terminal
	3190	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	3191	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	3192	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	3193	local_dvrserver_running=.TRUE.
	3194	else
	3195	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	3196	printf "\n \"$PALM_BIN\" "
	3197	locat=dvr
	3198	exit
	3199	fi
	3200
	3201	fi
	3202
	3203	else
	3204	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	3205	fi
	3206	fi
	3207
	3208
	3209	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	3210	# LESEN VON PALM)
	3211	cat > ENVPAR << %%END%%
	3212	&envpar run_identifier = '$fname', host = '$localhost',
	3213	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
[759]	3214	maximum_parallel_io_streams = $maximum_parallel_io_streams,
[260]	3215	maximum_cpu_time_allowed = ${cpumax}.,
	3216	revision = '$global_revision',
	3217	local_dvrserver_running = $local_dvrserver_running /
	3218
	3219	%%END%%
	3220
	3221
[1]	3222	# PROGRAMMSTART
	3223	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	3224	PATH=$PATH:$TEMPDIR
	3225
[359]	3226	# MPI debug option (argument checking, slows down execution due to increased latency)
	3227	if [[ "$mpi_debug" = true ]]
	3228	then
	3229	export MPI_CHECK_ARGS=1
	3230	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	3231	fi
	3232
[693]	3233	if [[ "$totalview" = true ]]
	3234	then
	3235	printf "\n *** totalview debugger will be used"
	3236	tv_opt="-tv"
	3237	else
	3238	tv_opt=""
	3239	fi
	3240
[1]	3241	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	3242	then
	3243	if [[ "$ENVIRONMENT" = BATCH ]]
	3244	then
[211]	3245	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	3246	then
	3247	printf "\n +++ debug is allowed in interactive mode only"
	3248	locat=debug
	3249	exit
	3250	fi
[1]	3251	fi
[1096]	3252	if [[ $localhost = ibmh ]]
[1]	3253	then
	3254
	3255	# SETUP THE IBM MPI ENVIRONMENT
	3256	export MP_SHARED_MEMORY=yes
	3257	export AIXTHREADS_SCOPE=S
	3258	export OMP_NUM_THREADS=$threads_per_task
	3259	export AUTHSTATE=files
	3260	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3261
	3262	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	3263	export MP_ADAPTER_USE=shared
	3264	export MP_CPU_USE=multiple
	3265	export MP_TIMEOUT=1200
	3266
	3267	unset MP_TASK_AFFINITY
	3268
	3269	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	3270	#(( ii = 1 ))
	3271	#while (( ii <= $numprocs ))
	3272	#do
	3273	# echo $localhost_realname >> hostfile
	3274	# (( ii = ii + 1 ))
	3275	#done
	3276	#export MP_HOSTFILE=hostfile
	3277
	3278	if [[ "$LOADLBATCH" = yes ]]
	3279	then
	3280	totalview poe a.out $ROPTS
	3281	else
	3282	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3283	export TVDSVRLAUNCHCMD=ssh
	3284	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3285	fi
[211]	3286	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	3287	then
	3288	# CURRENTLY NO DEBUGGER ON LCSGI
	3289	if [[ $run_coupled_model = true ]]
	3290	then
	3291	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	3292	locat=debug
	3293	exit
[223]	3294	else
	3295	echo "no_coupling" > runfile_atmos
[211]	3296	fi
	3297	(( ii = $numprocs / $threads_per_task ))
	3298	export OMP_NUM_THREADS=$threads_per_task
	3299	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3300	if [[ $threads_per_task != 1 ]]
	3301	then
	3302	printf "\n threads per task: $threads_per_task"
	3303	fi
	3304	printf "\n\n"
[223]	3305	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3306	then
	3307	# export MPI_LAUNCH_TIMEOUT=360
	3308	if [[ "$totalview" = true ]]
	3309	then
	3310	printf "\n running totalview debugger"
[693]	3311	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
[223]	3312	else
	3313	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3314	fi
	3315	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3316	then
	3317	# ulimit -s 300000 # A too large stack size causes problems
	3318	# export MV2_NUM_PORTS=2
	3319	# export MV2_CPU_MAPPING=0:1:2:3
[362]	3320	if [[ "$totalview" = true ]]
	3321	then
	3322	printf "\n running totalview debugger"
[693]	3323	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
[362]	3324	else
	3325	mpiexec ./a.out $ROPTS < runfile_atmos
	3326	fi
[223]	3327	fi
[1]	3328	else
	3329	printf "\n +++ no debug available on \"$localhost\" "
	3330	printf "\n or not implemented in mrun so far"
	3331	locat=debug
	3332	exit
	3333	fi
[622]	3334
	3335	# end debug mode
[1]	3336	else
[622]	3337
	3338	# normal execution
[1]	3339	if [[ -n $numprocs ]]
	3340	then
	3341	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	3342	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	3343	then
	3344	# SETUP THE IBM MPI ENVIRONMENT
[693]	3345	if [[ $host != ibmh && $host != ibmkisti ]]
[312]	3346	then
	3347	export MP_SHARED_MEMORY=yes
	3348	export AIXTHREAD_SCOPE=S
	3349	export OMP_NUM_THREADS=$threads_per_task
	3350	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	3351	export AUTHSTATE=files
	3352	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3353	# export MP_PRINTENV=yes
[1]	3354
[312]	3355	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	3356	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	3357	export MP_WAIT_MODE=poll
	3358	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	3359	fi
[693]	3360
	3361	if [[ $host = ibmkisti ]]
	3362	then
	3363	export LANG=en_US
	3364	export MP_SHARED_MEMORY=yes
[696]	3365	if [[ $threads_per_task = 1 ]]
	3366	then
	3367	export MP_SINGLE_THREAD=yes
	3368	export MEMORY_AFFINITY=MCM
	3369	else
	3370	export OMP_NUM_THREADS=$threads_per_task
	3371	fi
[693]	3372	fi
	3373
[1]	3374	if [[ "$LOADLBATCH" = yes ]]
	3375	then
	3376	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	3377	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3378	then
[102]	3379	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3380	else
[343]	3381	if [[ $run_coupled_model = false ]]
	3382	then
	3383	if [[ "$ocean_file_appendix" = true ]]
	3384	then
	3385	echo "precursor_ocean" > runfile_atmos
	3386	else
	3387	echo "precursor_atmos" > runfile_atmos
	3388	fi
	3389	else
	3390	(( iia = $numprocs_atmos / $threads_per_task ))
	3391	(( iio = $numprocs_ocean / $threads_per_task ))
	3392	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3393	printf "\n using $coupled_mode coupling"
	3394	printf "\n\n"
	3395	echo "coupled_run $iia $iio" > runfile_atmos
	3396	fi
	3397	poe ./a.out $ROPTS < runfile_atmos
[1]	3398	fi
	3399	else
[622]	3400	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
[1]	3401	then
[102]	3402	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[693]	3403	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
[1]	3404	then
	3405	if [[ -f $hostfile ]]
	3406	then
	3407	cp $hostfile hostfile
	3408	else
	3409	(( ii = 1 ))
	3410	while (( ii <= $numprocs ))
	3411	do
	3412	echo $localhost_realname >> hostfile
	3413	(( ii = ii + 1 ))
	3414	done
	3415	fi
	3416	export MP_HOSTFILE=hostfile
[331]	3417	if [[ $run_coupled_model = false ]]
	3418	then
	3419	if [[ "$ocean_file_appendix" = true ]]
	3420	then
	3421	echo "precursor_ocean" > runfile_atmos
	3422	else
	3423	echo "precursor_atmos" > runfile_atmos
	3424	fi
	3425	else
	3426	(( iia = $numprocs_atmos / $threads_per_task ))
	3427	(( iio = $numprocs_ocean / $threads_per_task ))
	3428	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3429	printf "\n using $coupled_mode coupling"
	3430	printf "\n\n"
	3431	echo "coupled_run $iia $iio" > runfile_atmos
	3432	fi
[622]	3433	if [[ $localhost = ibmy ]]
	3434	then
	3435	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3436	else
	3437	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
	3438	fi
[331]	3439
[1]	3440	else
	3441	if [[ "$host_file" = "" ]]
	3442	then
	3443	printf "\n +++ no hostfile given in configuration file"
	3444	locat=config_file
	3445	exit
	3446	else
	3447	eval host_file=$host_file
	3448	fi
	3449	export MP_HOSTFILE=$host_file
[102]	3450	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3451	fi
	3452	fi
[251]	3453	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3454	then
	3455	(( ii = nodes ))
	3456	if [[ $ii = 1 ]]
	3457	then
	3458	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3459	export MPIPROGINF=YES
[61]	3460	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3461	echo "*** execution on single node with mpirun"
[102]	3462	mpirun -np $numprocs ./a.out $ROPTS
[1]	3463	else
	3464	(( i = 0 ))
	3465	while (( i < ii ))
	3466	do
	3467	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3468	(( i = i + 1 ))
	3469	done
	3470
	3471	echo "#!/bin/sh" > mpi_exec_shell
	3472	echo " " >> mpi_exec_shell
	3473	echo "set -u" >> mpi_exec_shell
	3474	echo "F_ERRCNT=0" >> mpi_exec_shell
	3475	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3476	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3477	echo "cpurest=$cpurest" >> mpi_exec_shell
	3478	echo "fname=$fname" >> mpi_exec_shell
	3479	echo "localhost=$localhost" >> mpi_exec_shell
	3480	echo "return_addres=$return_addres" >> mpi_exec_shell
	3481	echo "return_username=$return_username" >> mpi_exec_shell
	3482	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3483	echo "write_binary=$write_binary" >> mpi_exec_shell
	3484	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3485	echo " " >> mpi_exec_shell
	3486	echo "export F_ERRCNT" >> mpi_exec_shell
	3487	echo "export MPIPROGINV" >> mpi_exec_shell
	3488	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3489	echo "export cpurest" >> mpi_exec_shell
	3490	echo "export fname" >> mpi_exec_shell
	3491	echo "export localhost" >> mpi_exec_shell
	3492	echo "export return_addres" >> mpi_exec_shell
	3493	echo "export return_username" >> mpi_exec_shell
	3494	echo "export tasks_per_node" >> mpi_exec_shell
	3495	echo "export write_binary" >> mpi_exec_shell
	3496	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3497	echo " " >> mpi_exec_shell
[102]	3498	echo "exec ./a.out" >> mpi_exec_shell
[1]	3499
	3500	chmod u+x mpi_exec_shell
	3501	export MPIPROGINF=YES
	3502	mpirun -f multinode_config &
	3503	wait
	3504
	3505	fi
[440]	3506	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
[1]	3507	then
	3508
	3509	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3510	# DOES NOT EXIST
[179]	3511	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	3512	then
[179]	3513	if [[ -f $hostfile ]]
	3514	then
	3515	cp $hostfile hostfile
[746]	3516	(( ii = $numprocs / $threads_per_task ))
[179]	3517	else
	3518	(( ii = 1 ))
	3519	while (( ii <= $numprocs / $threads_per_task ))
	3520	do
	3521	echo $localhost_realname >> hostfile
	3522	(( ii = ii + 1 ))
	3523	done
	3524	fi
	3525	eval zeile=\"`head -n $ii hostfile`\"
	3526	printf "\n *** running on: $zeile"
[1]	3527	fi
[179]	3528
[1]	3529	(( ii = $numprocs / $threads_per_task ))
	3530	export OMP_NUM_THREADS=$threads_per_task
[696]	3531	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3532	if [[ $threads_per_task != 1 ]]
	3533	then
[405]	3534	# increase stack size to unlimited, because large runs
	3535	# may abort otherwise
	3536	ulimit -Ss unlimited
	3537	printf "\n threads per task: $threads_per_task stacksize: unlimited"
[1]	3538	fi
[102]	3539	if [[ $run_coupled_model = false ]]
[1]	3540	then
[291]	3541	if [[ "$ocean_file_appendix" = true ]]
	3542	then
	3543	echo "precursor_ocean" > runfile_atmos
	3544	else
	3545	echo "precursor_atmos" > runfile_atmos
	3546	fi
[102]	3547	printf "\n\n"
[179]	3548	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3549	then
[221]	3550	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3551	then
[366]	3552	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
	3553	# export MPI_DSM_DISTRIBUTE=1
	3554	# MPI_DSM_CPULIST: pin MPI processes to cores
[377]	3555	if [[ $use_openmp = false ]]
	3556	then
[412]	3557	if [[ "$sgi_feature" = ice2 ]]
	3558	then
	3559	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
	3560	else
	3561	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
	3562	fi
[622]	3563	else
	3564	unset MPI_DSM_CPULIST
[377]	3565	fi
[366]	3566	# MPI_IB_RAILS: use both IB rails on ICE2
	3567	export MPI_BUFS_PER_HOST=512
	3568	export MPI_IB_RAILS=2
[369]	3569	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
	3570	export MPI_CONNECTIONS_THRESHOLD=8192
[738]	3571	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
[562]	3572	export MPI_TYPE_DEPTH=20
[738]	3573	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
[683]	3574	export MPI_GROUP_MAX=64
[738]	3575	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
[693]	3576	if [[ $use_openmp = true ]]
	3577	then
	3578	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
	3579	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
	3580	else
	3581	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
	3582	fi
[388]	3583
	3584	# next is test for openmp usage
[622]	3585	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
	3586	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
[221]	3587	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3588	then
[374]	3589	export MV2_NUM_PORTS=2
[376]	3590	# The default setting of MV2_CPU_MAPPING gives best results
[405]	3591	# export MV2_ENABLE_AFFINITY=1
[376]	3592	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
[412]	3593	# if [[ "$sgi_feature" = ice2 ]]
	3594	# then
	3595	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
	3596	# else
	3597	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
	3598	# fi
[678]	3599	if [[ $use_openmp = true ]]
	3600	then
	3601	unset MV2_CPU_MAPPING
	3602	export MV2_ENABLE_AFFINITY=0
	3603	fi
[412]	3604	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
[678]	3605	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
[622]	3606	if [[ $use_openmp = true ]]
[405]	3607	then
[678]	3608	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
[693]	3609	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
[405]	3610	else
[693]	3611	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
[405]	3612	fi
[738]	3613	elif [[ "$mpilib" = impi ]]
	3614	then
[1058]	3615	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
	3616	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
[221]	3617	fi
[892]	3618	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
[179]	3619	then
[544]	3620	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[755]	3621	elif [[ $host = lcflow ]]
	3622	then
	3623	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
[1021]	3624	elif [[ $host = lcsb ]]
	3625	then
	3626	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
[1040]	3627	elif [[ $host = lckiaps ]]
	3628	then
	3629	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
[1090]	3630	elif [[ $host = lckyu* ]]
	3631	then
	3632	mpiexec -n $ii a.out < runfile_atmos $ROPTS
[164]	3633	else
[223]	3634	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3635	fi
[1]	3636	else
[164]	3637
[206]	3638	# currently there is no full MPI-2 support on ICE and XT4
	3639	(( iia = $numprocs_atmos / $threads_per_task ))
	3640	(( iio = $numprocs_ocean / $threads_per_task ))
	3641	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3642	printf "\n using $coupled_mode coupling"
[102]	3643	printf "\n\n"
[164]	3644
[206]	3645	if [[ $coupled_mode = "mpi2" ]]
[164]	3646	then
[206]	3647	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3648	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3649	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3650	then
[197]	3651
[221]	3652	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3653	then
	3654	# export MPI_LAUNCH_TIMEOUT=360
	3655	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3656	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3657	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3658	then
	3659	# ulimit -s 300000 # A too large stack size causes problems
	3660	# export MV2_NUM_PORTS=2
	3661	# export MV2_CPU_MAPPING=0:1:2:3
	3662	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3663	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3664	fi
[197]	3665
[892]	3666	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
[206]	3667	then
[197]	3668
[206]	3669	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3670	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3671
	3672	else
	3673	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3674	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3675	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3676	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3677	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3678	fi
	3679	wait
	3680
[164]	3681	else
	3682
[206]	3683	echo "coupled_run $iia $iio" > runfile_atmos
	3684	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3685	then
	3686
[221]	3687	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3688	then
	3689	# export MPI_LAUNCH_TIMEOUT=360
	3690	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3691	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3692	then
	3693	# ulimit -s 300000 # A too large stack size causes problems
	3694	# export MV2_NUM_PORTS=2
	3695	# export MV2_CPU_MAPPING=0:1:2:3
	3696	mpiexec ./a.out $ROPTS < runfile_atmos
	3697	fi
[206]	3698
[892]	3699	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
[206]	3700	then
	3701
	3702	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3703
[718]	3704	elif [[ $host = lck \|\| $host = lckordi ]]
[367]	3705	then
	3706	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
[206]	3707	fi
	3708	wait
[164]	3709	fi
[102]	3710
[206]	3711	fi
[440]	3712	elif [[ $host = lckyoto ]]
	3713	then
	3714	set -xv
	3715	export P4_RSHCOMMAND=plesh
	3716	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
	3717	if [[ "$ENVIRONMENT" = BATCH ]]
	3718	then
[505]	3719	if [[ "$cond2" = fujitsu ]]
	3720	then
	3721	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
	3722	elif [[ "cond2" = pgi ]]
	3723	then
	3724	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
	3725	else
	3726	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
	3727	fi
[440]	3728	else
[505]	3729	if [[ "$cond2" = "" ]]
	3730	then
	3731	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
	3732	else
	3733	mpirun -np $numprocs ./a.out $ROPTS
	3734	fi
[440]	3735	fi
	3736	set +xv
[1]	3737	elif [[ $host = lctit ]]
	3738	then
[678]	3739	export OMP_NUM_THREADS=$threads_per_task
	3740	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3741	if [[ "$threads_per_task" != 1 ]]
	3742	then
	3743	export MV2_ENABLE_AFFINITY=0
	3744	fi
	3745	echo "----- PBS_NODEFILE content:"
	3746	cat $PBS_NODEFILE
	3747	echo "-----"
	3748	(( ii = $numprocs / $threads_per_task ))
	3749	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
	3750	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
[1]	3751	else
[102]	3752	mpprun -n $numprocs a.out $ROPTS
[1]	3753	fi
	3754	[[ $? != 0 ]] && execution_error=true
	3755
	3756
	3757	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3758	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3759	then
	3760	apprentice
	3761	fi
	3762	else
[102]	3763	a.out $ROPTS
[1]	3764	fi
	3765	fi
	3766	if [[ $? != 0 \|\| $execution_error = true ]]
	3767	then
	3768
	3769	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3770	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3771	printf "\n +++ runtime error occured"
	3772	locat=execution
	3773	exit
	3774	else
[102]	3775	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3776	printf "\n$striche\n *** execution finished \n"
[260]	3777
[261]	3778	# Stop the dvr streaming server and process the dvr output in order
	3779	# to create dvrs- and html-files containing all streams
[260]	3780	if [[ "$dvrserver_id" != "" ]]
	3781	then
	3782	kill $dvrserver_id
	3783	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3784
[262]	3785	# If there is a directory, data have been output by the
	3786	# streaming server. Otherwise, user has chosen dvrp_output=local
	3787	if [[ -d DATA_DVR ]]
	3788	then
[261]	3789
[262]	3790	# Add the current dvr configuration file to the dvr output
	3791	# directory
	3792	cp .dvrserver.config DATA_DVR
	3793
	3794	# Process the dvr output (option -s for also generating
	3795	# sequence mode data)
	3796	process_dvr_output -d DATA_DVR -f $fname -s
	3797
	3798	else
	3799
	3800	# Process the local output
	3801	process_dvr_output -l -d DATA_DVR -f $fname
	3802
	3803	fi
	3804
	3805	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3806	then
	3807
	3808	# Process dvr output generated in local mode (dvrp_output=local)
	3809	process_dvr_output -l -d DATA_DVR -f $fname
	3810
[260]	3811	fi
[1]	3812	fi
	3813
	3814
	3815
[503]	3816	# Call of combine_plot_fields in order to merge single files written
	3817	# by each PE into one file.
[920]	3818	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
	3819	then
	3820	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
	3821	printf "\n 2d- and/or 3d-data may be incomplete!"
	3822	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
	3823	elif [[ "$combine_plot_fields" == true ]]
	3824	then
	3825	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
	3826	combine_plot_fields${block}.x
	3827	else
	3828	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
	3829	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
	3830	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
	3831	fi
[503]	3832
	3833
	3834
[1]	3835	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3836	(( i = 0 ))
	3837	while (( i < ioc ))
	3838	do
	3839	(( i = i + 1 ))
	3840	if (( i == 1 ))
	3841	then
	3842	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3843	fi
	3844	printf "\n >>> ${out_command[$i]}"
	3845	eval ${out_command[$i]}
	3846	if (( i == ioc ))
	3847	then
	3848	printf "\n$striche\n"
	3849	fi
	3850	done
	3851
	3852
	3853	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3854	if [[ $do_trace = true ]]
	3855	then
	3856	printf "\n\n"
	3857	ls -al
	3858	fi
	3859
	3860
	3861
	3862	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3863	(( i = 0 ))
	3864	while (( i < iout ))
	3865	do
	3866	(( i = i + 1 ))
	3867	if (( i == 1 ))
	3868	then
	3869	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3870	fi
	3871
	3872	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3873	files_for_pes=false; filetyp=file
	3874	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3875	then
	3876	files_for_pes=true; filetyp=directory
	3877	actionout[$i]=""
	3878	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3879	then
	3880	actionout[$i]=""
	3881	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3882	then
	3883	files_for_pes=true; filetyp=directory
	3884	actionout[$i]="ar"
	3885	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3886	then
	3887	actionout[$i]="ar"
	3888	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3889	then
	3890	files_for_pes=true; filetyp=directory
	3891	actionout[$i]="fl"
	3892	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3893	then
	3894	actionout[$i]="fl"
	3895	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3896	then
	3897	files_for_pes=true; filetyp=directory
	3898	actionout[$i]="tr"
	3899	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3900	then
	3901	actionout[$i]="tr"
	3902	fi
	3903
	3904	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3905	then
	3906	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3907	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3908	then
	3909	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3910	else
	3911
	3912
	3913	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3914	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3915	# REMOTE-RECHNUNGEN
	3916	if [[ "${actionout[$i]}" = tr ]]
	3917	then
	3918	if [[ $localhost != $fromhost ]]
	3919	then
	3920	if [[ $files_for_pes = false ]]
	3921	then
	3922	cps=""
	3923	cst=""
	3924	else
	3925	cps=-c
	3926	cst="/"
	3927	fi
[622]	3928	if [[ $localhost = nech ]]
[1]	3929	then
	3930
	3931	# TRANSFER IN EIGENSTAENDIGEM JOB
	3932	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3933	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3934	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3935	if [[ $files_for_pes = false ]]
	3936	then
	3937	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3938	else
	3939	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3940	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3941	fi
	3942
	3943	echo "set -x" > transfer_${localout[$i]}
	3944	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3945
	3946	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	3947	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	3948	printf "\n or higher cycle\n"
[1094]	3949	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
[82]	3950
[1]	3951	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3952
	3953	if [[ $localhost = nech ]]
	3954	then
[1094]	3955	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
[1]	3956	else
	3957	if [[ "$LOGNAME" = b323013 ]]
	3958	then
[1094]	3959	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	3960	else
[1094]	3961	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	3962	fi
	3963	fi
	3964
	3965	else
	3966
	3967	# TRANSFER INNERHALB DIESES JOBS
	3968	transfer_failed=false
[82]	3969	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	3970	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
[1094]	3971	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
[82]	3972	[[ $? != 0 ]] && transfer_failed=true
[1]	3973
	3974	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3975	# LOKALER MASCHINE ANLEGEN
	3976	if [[ $transfer_failed = true ]]
	3977	then
	3978	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3979	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3980
	3981	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3982	# ANLEGEN.
	3983	eval local_catalog=${pathout[$i]}
	3984	if [[ ! -d $local_catalog ]]
	3985	then
	3986	printf " *** local directory does not exist. Trying to create:\n"
	3987	printf " $local_catalog \n"
	3988	mkdir -p $local_catalog
	3989	fi
	3990	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3991	transfer_problems=true
	3992	fi
	3993	fi
	3994	else
	3995
	3996	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	3997	actionout[$i]=""
	3998	fi
	3999	fi
	4000
	4001
	4002	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	4003	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	4004	# REMOTE-RECHNUNGEN
	4005	if [[ "${actionout[$i]}" = tra ]]
	4006	then
	4007	if [[ $localhost != $fromhost ]]
	4008	then
[622]	4009	if [[ $localhost = ibmh \|\| $localhost = nech ]]
[1]	4010	then
	4011
	4012	# TRANSFER IN EIGENSTAENDIGEM JOB
	4013	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	4014	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	4015	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	4016	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	4017
	4018	echo "set -x" > transfer_${localout[$i]}
	4019	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	4020
	4021	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	4022	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	4023	printf "\n or higher cycle\n"
[1094]	4024	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
[82]	4025
[1]	4026	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	4027
	4028	if [[ $localhost = nech ]]
	4029	then
[1094]	4030	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
[1]	4031	else
	4032	if [[ $LOGNAME = b323013 ]]
	4033	then
[1094]	4034	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	4035	else
[1094]	4036	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	4037	fi
	4038	fi
	4039
	4040	else
	4041
	4042	# TRANSFER INNERHALB DIESES JOBS
	4043	transfer_failed=false
[82]	4044	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	4045	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
[1094]	4046	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
[82]	4047	[[ $? != 0 ]] && transfer_failed=true
[1]	4048
	4049	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	4050	# LOKALER MASCHINE ANLEGEN
	4051	if [[ $transfer_failed = true ]]
	4052	then
	4053	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	4054	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	4055
	4056	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	4057	# ANLEGEN
	4058	eval local_catalog=${pathout[$i]}
	4059	if [[ ! -d $local_catalog ]]
	4060	then
	4061	printf " *** local directory does not exist. Trying to create:\n"
	4062	printf " $local_catalog \n"
	4063	mkdir -p $local_catalog
	4064	fi
	4065
	4066	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	4067	transfer_problems=true
	4068	fi
	4069	fi
	4070	else
	4071
	4072	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	4073	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	4074	actionout[$i]=a
	4075	fi
	4076	fi
	4077
	4078
	4079	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	4080	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	4081	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	4082	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	4083	if [[ "${actionout[$i]}" = fl ]]
	4084	then
	4085	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4086	chmod g+rx $tmp_data_catalog
	4087	if [[ $files_for_pes = false ]]
	4088	then
	4089	printf "\n >>> OUTPUT: ${localout[$i]} to"
	4090	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	4091	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	4092	else
	4093	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	4094	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	4095	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	4096	cd ${localout[$i]}
	4097	for file in $(ls *)
	4098	do
	4099	ln -f $file $tmp_data_catalog/${frelout[$i]}
	4100	done
	4101	cd $TEMPDIR
[1]	4102	fi
	4103
	4104
	4105	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	4106	if [[ $store_on_archive_system = true ]]
	4107	then
	4108
	4109	if [[ $archive_system = asterix ]]
	4110	then
	4111	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4112	if [[ $files_for_pes = false ]]
	4113	then
	4114	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4115	else
	4116	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4117	fi
	4118	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4119	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	4120	echo "then" >> archive_${frelout[$i]}
	4121	echo " do_stageout=false" >> archive_${frelout[$i]}
	4122	echo "else" >> archive_${frelout[$i]}
	4123	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	4124	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	4125	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	4126	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	4127	if [[ $files_for_pes = false ]]
	4128	then
	4129	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	4130	else
	4131	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	4132	fi
	4133	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	4134	echo "fi" >> archive_${frelout[$i]}
	4135	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4136	elif [[ $archive_system = DMF ]]
	4137	then
	4138	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4139	if [[ $files_for_pes = false ]]
	4140	then
	4141	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	4142	locat=DMF
	4143	exit
	4144	else
	4145	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	4146	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	4147	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	4148	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	4149	fi
	4150	elif [[ $archive_system = tivoli ]]
	4151	then
	4152	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4153	if [[ $files_for_pes = false ]]
	4154	then
	4155	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4156	echo "set -x" >> archive_${frelout[$i]}
	4157	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4158	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4159	else
	4160
	4161	echo "set -x" >> archive_${frelout[$i]}
	4162	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	4163	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4164	cd $tmp_data_catalog
	4165	all_files=`ls -1 ${frelout[$i]}/*`
	4166	cd - > /dev/null
	4167	(( inode = 0 ))
	4168	(( tp1 = tasks_per_node + 1 ))
	4169	while (( inode < nodes ))
	4170	do
	4171	# echo "*** all_files = \"$all_files\" "
	4172	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	4173	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	4174	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	4175	# echo "*** files = \"$files\" "
	4176	# echo "*** all_files = \"$all_files\" "
[416]	4177	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4178	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4179	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
	4180	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[397]	4181	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	4182	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[1]	4183	(( inode = inode + 1 ))
	4184	done
	4185	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4186	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4187	fi
	4188	elif [[ $archive_system = ut ]]
	4189	then
	4190	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4191	if [[ $files_for_pes = false ]]
	4192	then
	4193	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4194	echo "set -x" >> archive_${frelout[$i]}
	4195	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4196	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4197	else
	4198
	4199	echo "set -x" >> archive_${frelout[$i]}
	4200	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	4201	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4202	cd $tmp_data_catalog
	4203	all_files=`ls -1 ${frelout[$i]}/*`
	4204	cd - > /dev/null
	4205	(( inode = 0 ))
	4206	(( tp1 = tasks_per_node + 1 ))
	4207	while (( inode < nodes ))
	4208	do
	4209	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	4210	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	4211	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4212	(( inode = inode + 1 ))
	4213	done
	4214	fi
	4215	elif [[ $archive_system = none ]]
	4216	then
	4217	printf " +++ archiving on $localhost not available!\n"
	4218	fi
	4219
	4220	if [[ $archive_system != none ]]
	4221	then
[399]	4222	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
[1]	4223	then
[1094]	4224	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
	4225	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
[1]	4226	elif [[ $localhost = nech ]]
	4227	then
[1094]	4228	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
[1]	4229	fi
	4230	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4231	fi
	4232	else
[399]	4233	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
[1]	4234	fi
	4235
	4236
	4237	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	4238	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	4239	if [[ $files_for_pes = false ]]
	4240	then
	4241	cat /dev/null > ${pathout[$i]}
	4242	else
	4243	mkdir -p ${pathout[$i]}
	4244	fi
	4245
	4246	fi
	4247
	4248
	4249	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	4250	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	4251	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	4252	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	4253	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	4254	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	4255	if [[ "${actionout[$i]}" = ar ]]
	4256	then
	4257	if [[ $files_for_pes = false ]]
	4258	then
	4259	printf "\n >>> OUTPUT: ${localout[$i]} to"
	4260	printf "\n ${pathout[$i]}"
	4261	printf "\n File will be copied to archive-system ($archive_system) !\n"
	4262	else
	4263	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	4264	printf "\n ${pathout[$i]}"
	4265	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	4266	fi
	4267	mv ${localout[$i]} ${frelout[$i]}
	4268
	4269	file_saved=false
	4270
	4271	if [[ $archive_system = asterix ]]
	4272	then
	4273	do_stageout=true
	4274	(( stageout_anz = 0 ))
	4275	while [[ $do_stageout = true ]]
	4276	do
	4277	if [[ $files_for_pes = false ]]
	4278	then
	4279	stageout ${frelout[$i]} > STAGE_OUTPUT
	4280	else
	4281	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	4282	fi
	4283	cat STAGE_OUTPUT
	4284	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	4285	then
	4286	file_saved=true
	4287	do_stageout=false
	4288	else
	4289	if [[ $files_for_pes = false ]]
	4290	then
	4291	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	4292	else
	4293	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	4294	fi
	4295	(( stageout_anz = stageout_anz + 1 ))
	4296	if (( stageout_anz == 10 ))
	4297	then
	4298	printf "\n +++ stoped after 10 unsuccessful tries!"
	4299	archive_save=false
	4300	do_stageout=false
	4301	else
	4302	printf "\n *** new try to store on archive after 15 min:"
	4303	sleep 900
	4304	fi
	4305	fi
	4306	done
	4307	elif [[ $archive_system = DMF ]]
	4308	then
	4309	if [[ $files_for_pes = false ]]
	4310	then
	4311	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	4312	locat=DMF
	4313	exit
	4314	else
	4315	rm -rf $ARCHIVE/${frelout[$i]}
	4316	cp -r ${frelout[$i]} $ARCHIVE
	4317	fi
	4318	file_saved=true
	4319	elif [[ $archive_system = tivoli ]]
	4320	then
	4321	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4322	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4323	# GELEGT WERDEN
	4324	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4325	chmod g+rx $tmp_data_catalog
	4326	if [[ $files_for_pes = false ]]
	4327	then
	4328	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4329	else
	4330	mkdir $tmp_data_catalog/${frelout[$i]}
	4331	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4332	fi
	4333
	4334	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4335	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4336	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4337	if [[ $files_for_pes = false ]]
	4338	then
	4339	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4340	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4341	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4342	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4343	else
	4344	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4345	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4346	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4347	fi
	4348
[1094]	4349	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
[1]	4350	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4351	file_saved=true
	4352
	4353	elif [[ $archive_system = ut ]]
	4354	then
	4355	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4356	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4357	# GELEGT WERDEN
	4358	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4359	chmod g+rx $tmp_data_catalog
	4360	if [[ $files_for_pes = false ]]
	4361	then
	4362	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4363	else
	4364	mkdir $tmp_data_catalog/${frelout[$i]}
	4365	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4366	fi
	4367
	4368	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4369	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4370	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4371	if [[ $files_for_pes = false ]]
	4372	then
	4373	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4374	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4375	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4376	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4377	else
	4378	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4379	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4380	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4381	fi
	4382
[1094]	4383	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
[1]	4384	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4385	file_saved=true
	4386
	4387	else
	4388	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	4389	archive_save=false
	4390	fi
	4391	if [[ $file_saved = true ]]
	4392	then
	4393	if [[ $files_for_pes = false ]]
	4394	then
	4395	cat /dev/null > ${pathout[$i]}
	4396	else
	4397	mkdir -p ${pathout[$i]}
	4398	fi
	4399	fi
	4400	fi
	4401
	4402	# APPEND AUF LOKALER MASCHINE
	4403	if [[ "${actionout[$i]}" = "a" ]]
	4404	then
[741]	4405	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
	4406	then
	4407	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
	4408	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
	4409	else
	4410	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	4411	cat ${localout[$i]} >> ${pathout[$i]}
	4412	fi
[1]	4413	fi
	4414
	4415	# KOPIEREN AUF LOKALER MASCHINE
	4416	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	4417	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	4418	then
	4419
	4420	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	4421	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	4422	then
	4423	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	4424	if [[ $link_local_output = true ]]
	4425	then
	4426	printf " using ln -f\n"
	4427	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4428	fi
	4429	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4430	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	4431	then
	4432	if [[ $link_local_output = true ]]
	4433	then
	4434	printf " ln failed, using cp...\n"
	4435	fi
	4436	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4437	fi
[1]	4438	else
	4439	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	4440	if [[ $link_local_output = true ]]
	4441	then
	4442	printf " using ln -f\n"
	4443	ln -f ${localout[$i]} ${pathout[$i]}
	4444	fi
	4445	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4446	if [[ ! -f "${pathout[$i]}" ]]
	4447	then
	4448	if [[ $link_local_output = true ]]
	4449	then
	4450	printf " ln failed, using cp...\n"
	4451	fi
	4452	cp ${localout[$i]} ${pathout[$i]}
	4453	fi
[1]	4454	fi
	4455
	4456	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	4457	then
	4458
	4459	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	4460	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	4461	# WIRD DANN KOPIERT
	4462	# PER MOVE UMBENANNT WERDEN
	4463	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	4464	if [[ $link_local_output = true ]]
	4465	then
	4466	printf " using ln -f\n"
	4467	mkdir ${pathout[$i]}
	4468	cd ${localout[$i]}
	4469	for file in $(ls *)
	4470	do
	4471	ln -f $file ${pathout[$i]}
	4472	done
	4473	cd $TEMPDIR
	4474	fi
	4475	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	4476	if [[ ! -f "${pathout[$i]}/_0000" ]]
	4477	then
	4478	if [[ $link_local_output = true ]]
	4479	then
	4480	printf " ln failed for .../_0000, using cp...\n"
	4481	fi
	4482	cp -r ${localout[$i]} ${pathout[$i]}
	4483	fi
[1]	4484
	4485	fi
	4486	fi
	4487	done
	4488	if (( i != 0 ))
	4489	then
	4490	if [[ $transfer_problems = true ]]
	4491	then
	4492	printf "\n$striche\n *** OUTPUT-files saved"
	4493	printf "\n +++ WARNING: some data transfers failed! \n"
	4494	else
	4495	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4496	fi
	4497	fi
	4498
	4499
	4500	# EVENTUELL FOLGEJOB STARTEN
	4501	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4502	if [[ -f CONTINUE_RUN ]]
	4503	then
	4504
	4505	if [[ $archive_save = true ]]
	4506	then
	4507
	4508	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4509	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4510	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4511	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4512	# HANDEN
	4513	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4514	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4515	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4516	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4517	then
	4518	mc=`echo $mc \| sed 's/#/f/g'`
	4519	fi
	4520
	4521
	4522	# JOB STARTEN
	4523	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4524	echo " $mc"
	4525	printf "\n$striche\n"
	4526	if [[ $localhost != $fromhost ]]
	4527	then
	4528
[693]	4529	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
[1]	4530	then
	4531	echo "*** ssh will be used to initiate restart-runs!"
	4532	echo " return_addres=\"$return_addres\" "
	4533	echo " return_username=\"$return_username\" "
[635]	4534	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
[1]	4535	then
[1094]	4536	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4537	else
[693]	4538	if [[ $localhost = ibmkisti ]]
	4539	then
[1094]	4540	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
[693]	4541	else
[1094]	4542	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[693]	4543	fi
[1]	4544	fi
	4545	else
	4546	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4547	locat=restart; exit
	4548	fi
	4549
	4550	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4551	# DER AKTUELLE JOB ENDET
[399]	4552	if [[ $queue = special1q ]]
	4553	then
	4554	sleep 120
	4555	else
	4556	sleep 30
	4557	fi
[1]	4558
	4559	else
	4560
	4561	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4562	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4563	cd $LOCAL_PWD
[108]	4564	if [[ $localhost = lcfimm ]]
	4565	then
[1094]	4566	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[108]	4567	else
	4568	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4569	fi
[1]	4570	cd - > /dev/null
	4571	fi
	4572	printf "\n$striche\n *** restart-run initiated \n"
	4573
	4574
	4575	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4576	# GEHOLT WORDEN SIND, LOESCHEN
	4577	(( i = 0 ))
	4578	while (( i < iin ))
	4579	do
	4580	(( i = i + 1 ))
	4581	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4582	then
	4583	rm -r $tmp_data_catalog/${frelin[$i]}
	4584	fi
	4585	done
	4586
	4587	else
	4588
	4589	printf "\n +++ no restart-run possible, since errors occured"
	4590	printf "\n during the archive process"
	4591	fi
	4592
	4593	fi
	4594
	4595
	4596
	4597	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4598	if [[ "$email_notification" != "none" ]]
[1]	4599	then
	4600
	4601	if [[ $localhost != $fromhost ]]
	4602	then
	4603	if [[ -f CONTINUE_RUN ]]
	4604	then
	4605	echo "PALM restart run necessary" > email_text
	4606	echo "description header of actual run:" >> email_text
	4607	cat CONTINUE_RUN >> email_text
	4608	echo "mrun-command to restart:" >> email_text
	4609	echo "$mc" >> email_text
	4610	else
	4611	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4612	fi
	4613	mail $email_notification < email_text
	4614	printf "\n *** email notification sent to \"$email_notification\" "
	4615	fi
	4616	fi
	4617
	4618
	4619
	4620	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4621	cd $HOME
	4622	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4623
	4624	else
	4625
	4626
	4627	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4628	# CHENDE AKTIONEN DURCHGEFUEHRT
	4629
	4630	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[821]	4631	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	4632	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4633	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4634	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4635	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4636	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4637	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4638	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4639	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4640	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4641	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4642	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4643	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4644	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4645	if [[ $use_openmp = true ]]
	4646	then
[622]	4647	mrun_com=${mrun_com}" -O $threads_per_task"
[1]	4648	fi
[759]	4649	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
[397]	4650	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
[1]	4651	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4652	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4653	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4654	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4655	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4656	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[920]	4657	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
	4658	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
[759]	4659	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
[1]	4660	if [[ $do_remote = true ]]
	4661	then
	4662	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4663	fi
	4664
	4665
	4666	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4667	jobfile=jobfile.$RANDOM
	4668
	4669
	4670	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4671	echo "mkdir $TEMPDIR" >> $jobfile
	4672	echo "cd $TEMPDIR" >> $jobfile
	4673
	4674
	4675	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4676	if [[ $do_trace = true ]]
	4677	then
	4678	echo "set -x" >> $jobfile
	4679	else
	4680	echo "set +vx" >> $jobfile
	4681	fi
	4682
	4683
[1043]	4684	# initialize the environment and load modules
	4685	if [[ "$init_cmds" != "" ]]
	4686	then
	4687	echo "$init_cmds" >> $jobfile
	4688	fi
	4689	if [[ "$module_calls" != "" ]]
	4690	then
	4691	echo "$module_calls" >> $jobfile
	4692	fi
	4693
	4694
[191]	4695	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4696	# DATEI FUER DEN JOB
[693]	4697	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
[1]	4698	then
	4699
[191]	4700	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4701	# KOPIEREN
	4702	if [[ $restart_run != true ]]
	4703	then
	4704	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4705	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4706	fi
[1]	4707
[191]	4708	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[693]	4709	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
[193]	4710	echo "set -x" >> $jobfile
[693]	4711	if [[ $host = $localhost ]]
	4712	then
	4713	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4714	else
	4715	if [[ $host != ibmkisti ]]
	4716	then
[1094]	4717	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
[693]	4718	else
	4719	# on KISTI's IBM firewall is only opened on interactive node
	4720	echo "localdir=\`pwd\`" >> $jobfile
[1094]	4721	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
[693]	4722	fi
	4723	fi
[193]	4724	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4725
[193]	4726	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4727	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4728	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4729	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4730	echo "execute_mrun=true" >> $jobfile
	4731	echo " " >> $jobfile
	4732
[191]	4733	else
	4734
	4735	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4736	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4737	if [[ $do_compile = true ]]
	4738	then
	4739
	4740	source_catalog=SOURCES_FOR_RUN_$fname
	4741
	4742	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4743	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4744	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4745	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4746	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4747	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4748
	4749	for filename in $source_list
	4750	do
	4751	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4752	echo "cat > $filename << \"%END%\"" >> $jobfile
	4753	cat $source_catalog/$filename >> $jobfile
	4754	echo " " >> $jobfile
	4755	echo "%END%" >> $jobfile
	4756	echo " " >> $jobfile
	4757	done
	4758
[1]	4759	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4760	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4761	cat $source_catalog/Makefile >> $jobfile
[1]	4762	echo " " >> $jobfile
	4763	echo "%END%" >> $jobfile
	4764	echo " " >> $jobfile
	4765
[191]	4766	echo "cd - > /dev/null" >> $jobfile
[1]	4767
[191]	4768	fi
[1]	4769
	4770
[191]	4771	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4772	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4773	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4774	cat $config_file >> $jobfile
	4775	echo "%END%" >> $jobfile
	4776	echo " " >> $jobfile
[1]	4777
	4778
[191]	4779	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4780	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[693]	4781	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4782	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4783	echo "%END%" >> $jobfile
[191]	4784	echo "chmod u+x $mrun_script_name" >> $jobfile
	4785	echo "execute_mrun=true" >> $jobfile
	4786	echo " " >> $jobfile
[1]	4787
	4788	fi
	4789
[191]	4790
[1]	4791	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4792	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4793	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4794	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4795	if [[ $do_remote = true ]]
	4796	then
	4797	(( i = 0 ))
	4798	while (( i < iin ))
	4799	do
	4800	(( i = i + 1 ))
	4801	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4802	if [[ "${transin[$i]}" = job ]]
	4803	then
	4804	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4805	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4806	echo " " >> $jobfile
	4807	echo "%END%" >> $jobfile
	4808	else
[1094]	4809	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4810	fi
	4811
	4812	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4813	echo "if [[ \$? = 1 ]]" >> $jobfile
	4814	echo "then" >> $jobfile
	4815	echo " echo \" \" " >> $jobfile
	4816	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4817	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4818	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4819	echo " execute_mrun=false" >> $jobfile
	4820	echo "fi" >> $jobfile
	4821	done
	4822	fi
	4823
	4824	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4825	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4826	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4827	echo "export LOCAL_PWD" >> $jobfile
	4828
	4829	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4830	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4831	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4832
[66]	4833	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4834	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4835	then
	4836	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4837	fi
[1]	4838
[693]	4839	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
[1]	4840	echo "set -x" >> $jobfile
[693]	4841	echo "queue=$queue" >> $jobfile
[1]	4842	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4843
	4844	echo 'ls -al; echo `pwd`' >> $jobfile
	4845	echo "cd \$HOME" >> $jobfile
	4846	echo "rm -rf $TEMPDIR" >> $jobfile
	4847
	4848
	4849
	4850
	4851	# JOB PER SUBJOB STARTEN
	4852	if [[ $silent = false ]]
	4853	then
	4854	printf "\n "
	4855	else
	4856	printf "\n\n"
	4857	fi
	4858
[1094]	4859	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
[1]	4860	rm -rf $jobfile
	4861
	4862
	4863	fi # ENDE REMOTE-TEIL
	4864
	4865
	4866
	4867	# ENDE DER PROZEDUR

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