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source: palm/trunk/SCRIPTS/mrun @ 1094

Last change on this file since 1094 was 1094, checked in by raasch, 12 years ago
scp/ssh port can be set explicitly
Property svn:keywords set to `Id Rev`
File size: 176.5 KB

Line
1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	# explicit ssh/scp port can be set in config file with environment variable
25	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: mrun 1094 2013-02-03 01:52:12Z raasch $
30	#
31	# 2013-02-02 07:06:13Z raasch
32	# adjustments for Kyushu-University computing center (lckyut)
33	#
34	# 1083 2013-01-04 10:22:09Z maronga
35	# bugfix in parameter file check (read %cpp_options was missing)
36	#
37	# 1069 2012-11-28 16:18:43Z maronga
38	# bugfix: coupling mode was always set to mpi2, typos removed
39	#
40	# 1058 2012-11-21 07:00:35Z raasch
41	# Intel inspector (inspxe) is given the number of PEs instead of the number of
42	# nodes
43	#
44	# 1046 2012-11-09 14:38:45Z maronga
45	# code put under GPL (PALM 3.9)
46	#
47	# 21/03/94 - Siggi - first version finished
48	# 03/03/94 - Siggi - script development started
49	#
50	#--------------------------------------------------------------------------------#
51	# mrun - script for running PALM jobs
52	#--------------------------------------------------------------------------------#
53
54
55
56	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
57
58	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
59	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
60	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
61
62	AddFilenames=""
63	additional_conditions=""
64	add_source_path=""
65	afname=""
66	archive_save=true
67	archive_system=none
68	check_namelist_files=true
69	combine_plot_fields=true
70	compiler_name=""
71	cond1=""
72	cond2=""
73	config_file=.mrun.config
74	coupled_dist=""
75	coupled_mode="mpi1"
76	cpp_opts=""
77	cpp_options=""
78	cpumax=0
79	cpurest=0
80	delete_temporary_catalog=true
81	do_batch=false
82	do_compile=true
83	do_remote=false
84	do_stagein=true
85	do_stageout=true
86	do_trace=false
87	email_notification="none"
88	exclude=""
89	executable=""
90	execution_error=false
91	fimm=false
92	fname=test
93	fromhost=""
94	global_revision=""
95	group_number=none
96	host=""
97	host_file=""
98	hp=""
99	ignore_archive_error=false
100	input_list=""
101	interpreted_config_file=""
102	job_catalog="~/job_queue"
103	job_on_file=""
104	keep_data_from_previous_run=false
105	link_local_input=false
106	link_local_output=false
107	localhost_realname=$(hostname)
108	local_compile=false
109	local_dvrserver_running=.FALSE.
110	locat=normal
111	mainprog=""
112	makefile=""
113	max_par_io_str=""
114	mc=$0
115	while [[ $(echo $mc \| grep -c "/") != 0 ]]
116	do
117	mc=`echo $mc \| cut -f2- -d"/"`
118	done
119	module_calls=""
120	mrun_script_name=$mc
121	netcdf_inc=""
122	netcdf_lib=""
123	netcdf_support=false
124	node_usage=default
125	numprocs=""
126	numprocs_atmos=0
127	numprocs_ocean=0
128	OOPT=""
129	openmp=false
130	output_list=""
131	package_list=""
132	punkte="..........................................................."
133	queue=none
134	read_from_config=""
135	restart_run=false
136	if [[ `hostname` = rte10 ]]
137	then
138	return_addres=133.5.185.60
139	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
140	elif [[ `hostname` = climate0 ]]
141	then
142	return_addres=165.132.26.68
143	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
144	elif [[ `hostname` = urban00 ]]
145	then
146	return_addres=147.46.30.151
147	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
148	else
149	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
150	fi
151	return_password=""
152	return_username=$LOGNAME
153	remotecall=false
154	remote_username=""
155	run_coupled_model=false
156	run_mode=""
157	scirocco=false
158	store_on_archive_system=false
159	striche=" ----------------------------------------------------------------------------"
160	silent=false
161	source_list=""
162	source_path=SOURCE
163	tasks_per_node=""
164	threads_per_task=1
165	tmpcreate=false
166	tmp_data_catalog=""
167	transfer_problems=false
168	usern=$LOGNAME
169	use_openmp=false
170	working_directory=`pwd`
171	TOPT=""
172	XOPT=""
173	zeit=$( date \| cut -c 12-19 )
174
175	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
176	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
177
178	typeset -R30 calltime
179	typeset -L20 spalte1
180	typeset -L40 spalte2
181	typeset -L60 spalte3
182	typeset -L35 string1=`date`
183	typeset -L12 string2=$usern
184	typeset -L12 string3=$localhost_realname
185	typeset -L12 string4
186	typeset -L12 string5
187	typeset -L30 version="MRUN 2.0 Rev$Rev: 1094 $"
188
189
190
191	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
192	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
193
194	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
195	# EXPORTIERT WERDEN
196	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
197	export group_number input_list memory numprocs output_list queue run_mode
198
199
200
201	# FEHLERBEHANDLUNG
202	# BEI EXIT:
203	trap 'rm -rf $working_directory/tmp_mrun
204	if [[ $locat != localhost ]]
205	then
206	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
207	# then
208	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
209	#MRUN-calls on $localhost
210	#
211	#date and time user localhost remotehost termination mrun-command
212	#--------------------------------------------------------------------------------------------------------------------
213	#%STATEND%
214	# chmod 666 ${mrun_path}/statistik/mrun_statistik
215	# fi
216	#
217	# # EINTRAG IN DIE STATISTIK-DATEI
218	# string4=$host
219	# string5=$locat
220	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
221	# then
222	# if [[ $do_batch = true ]]
223	# then
224	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
225	# else
226	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
227	# fi
228	# fi
229	echo " " > /dev/null
230	fi
231
232	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
233	then
234
235	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
236	(( i = 0 ))
237	while (( i < iec ))
238	do
239	(( i = i + 1 ))
240	printf "\n *** Execution of ERROR-command:\n"
241	printf " >>> ${err_command[$i]}\n"
242	eval ${err_command[$i]}
243	done
244	if [[ -n $interpreted_config_file ]] then
245	rm -rf $interpreted_config_file
246	fi
247	if [[ -n .mrun_environment ]] then
248	rm -rf .mrun_environment
249	fi
250	if [[ $tmpcreate = true ]]
251	then
252	printf "\n *** Contents of \"$TEMPDIR\":\n"
253	ls -al; cd
254	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
255	fi
256	if [[ "$dvrserver_id" != "" ]]
257	then
258	echo "+++ killing dvrserver_id=$dvrserver_id"
259	kill $dvrserver_id
260	fi
261	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
262	then
263	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
264	fi
265	printf "\n\n+++ MRUN killed \n\n"
266	elif [[ $locat != control_c ]]
267	then
268	printf "\n\n --> all actions finished\n\n"
269	printf " Bye, bye $usern !!\n\n"
270	fi' exit
271
272
273	# BEI TERMINAL-BREAK:
274	trap 'rm -rf $working_directory/tmp_mrun
275	rm -rf $working_directory/tmp_check_namelist_files
276	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
277	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
278	then
279	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
280	fi
281	if [[ "$dvrserver_id" != "" ]]
282	then
283	echo "+++ killing dvrserver_id=$dvrserver_id"
284	kill $dvrserver_id
285	fi
286	printf "\n+++ MRUN killed by \"^C\" \n\n"
287	locat=control_c
288	exit
289	' 2
290
291
292	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
293	# BEEN SET
294	if [[ "$PALM_BIN" = "" ]]
295	then
296	printf "\n +++ environment variable PALM_BIN has not been set"
297	printf "\n please set it to the directory where the PALM scripts are located"
298	locat=palm_bin; exit
299	fi
300	export PATH=$PALM_BIN:$PATH
301
302
303
304	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
305	# FUER FOLGEJOBS BENOETIGT WIRD
306	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
307	do
308	case $option in
309	(a) afname=$OPTARG;;
310	(A) store_on_archive_system=true; mc="$mc -A";;
311	(b) do_batch=true; mc="$mc -b";;
312	(B) delete_temporary_catalog=false; mc="$mc -B";;
313	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
314	(C) restart_run=true; mc="$mc -C";;
315	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
316	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
317	(F) job_on_file="-D"; mc="$mc -F";;
318	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
319	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
320	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
321	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
322	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
323	(I) ignore_archive_error=true; mc="$mc -I";;
324	(k) keep_data_from_previous_run=true; mc="$mc -k";;
325	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
326	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
327	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
328	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
329	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
330	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
331	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
332	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
333	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
334	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
335	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
336	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
337	(S) read_from_config=false; mc="$mc -S";;
338	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
339	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
340	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
341	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
342	(v) silent=true; mc="$mc -v";;
343	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
344	(x) do_trace=true;set -x; mc="$mc -x";;
345	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
346	(y) ocean_file_appendix=true; mc="$mc -y";;
347	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
348	(z) check_namelist_files=false; mc="$mc -z";;
349	(Z) combine_plot_fields=false; mc="$mc -Z";;
350	(\?) printf "\n +++ unknown option $OPTARG \n"
351	printf "\n --> type \"$0 ?\" for available options \n"
352	locat=parameter;exit;;
353	esac
354	done
355
356
357	# EVTL. POSITIONSPARAMETER EINLESEN
358	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
359	shift OPTIND-1
360
361
362	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
363	if [[ "$1" = "?" ]]
364	then
365	(printf "\n *** mrun can be called as follows:\n"
366	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
367	printf "\n Description of available options:\n"
368	printf "\n Option Description Default-Value"
369	printf "\n -a base name of input files equiv. -d"
370	printf "\n -A archiving when using file-attribute fl"
371	printf "\n -b batch-job on local machine ---"
372	printf "\n -B do not delete temporary directory at end ---"
373	printf "\n -c configuration file .mrun.config"
374	printf "\n -d base name of files attached to program test"
375	printf "\n -D preprocessor(cpp)-directives \"\" "
376	printf "\n -F create remote job file only ---"
377	printf "\n -h execution host $localhost_realname"
378	printf "\n -i INPUT control list \"\" "
379	printf "\n -I archiving errors of previous batch-jobs"
380	printf "\n will be ignored"
381	printf "\n -k keep data from previous run"
382	printf "\n -K additional conditions for controling"
383	printf "\n usage of conditional code and"
384	printf "\n env-variables in configuration file \"\" "
385	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
386	printf "\n -M Makefile name Makefile"
387	printf "\n -n node usage (shared/not_shared) depending on -h"
388	printf "\n -o OUTPUT control list \"\" "
389	printf "\n -O use OpenMP ---"
390	printf "\n -p software package list \"\" "
391	printf "\n -q queue \"$queue\" "
392	printf "\n -r run control list (combines -i -o) \"\" "
393	printf "\n -s filenames of routines to be compiled \"\" "
394	printf "\n must end with .f, .f90, .F, or .c !"
395	printf "\n use \"..\" for more than one file and wildcards"
396	printf "\n -s LM compiles all locally modified files"
397	printf "\n -S config file interpreted by shellscript ---"
398	printf "\n -t allowed cpu-time in seconds (batch) 0"
399	printf "\n -T tasks per node depending on -h"
400	printf "\n -u username on remote machine \"\" "
401	printf "\n -v no prompt for confirmation ---"
402	printf "\n -w maximum parallel io streams as given by -X"
403	printf "\n -x tracing of mrun for debug purposes ---"
404	printf "\n -X # of processors (on parallel machines) 1"
405	printf "\n -y add appendix \"_O\" to all local output"
406	printf "\n files (ocean precursor runs followed by"
407	printf "\n coupled atmosphere-ocean runs) ---"
408	printf "\n -Y run coupled model, \"#1 #2\" with"
409	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
410	printf "\n -z disable a priori parameter file check ---"
411	printf "\n -Z skip combine_plot_fields at the end of "
412	printf "\n the simulation ---"
413	printf "\n "
414	printf "\n Possible values of positional parameter <modus>:"
415	printf "\n \"?\" - this outline \n\n") \| more
416	exit
417	elif [[ "$1" != "" ]]
418	then
419	printf "\n +++ positional parameter $1 unknown \n"
420	locat=parameter; exit
421	fi
422
423
424
425	# KURZE STARTMELDUNG
426	printf "\n*** $version "
427	printf "\n will be executed. Please wait ..."
428
429
430
431	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
432	if [[ ! -f $config_file ]]
433	then
434	printf "\n\n +++ configuration file: "
435	printf "\n $config_file"
436	printf "\n does not exist"
437	locat=connect; exit
438	fi
439
440
441	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
442	line=""
443	grep "%host_identifier" $config_file > tmp_mrun
444	while read line
445	do
446	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
447	then
448	HOSTNAME=`echo $line \| cut -d" " -s -f2`
449	host_identifier=`echo $line \| cut -d" " -s -f3`
450	if [[ $localhost_realname = $HOSTNAME ]]
451	then
452	localhost=$host_identifier
453	break
454	fi
455	fi
456	done < tmp_mrun
457
458	if [[ "$localhost" = "" ]]
459	then
460	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
461	printf "\n for local host \"$localhost_realname\"."
462	printf "\n Please add line"
463	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
464	printf "\n to the configuration file."
465	locat=localhost; exit
466	fi
467
468
469	# HOSTSPEZIFISCHE VARIABLEN SETZEN
470	case $localhost_realname in
471	(r1\|r2\|h01\|b01) archive_system=tivoli;;
472	(cs*) archive_system=ut;;
473	(fimm.bccs.uib.no) fimm=true;;
474	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
475	(scirocco) scirocco=true;;
476	esac
477
478
479
480	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
481	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
482	[[ "$afname" = "" ]] && afname=$fname
483
484
485	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
486	if [[ "$run_mode" != "" ]]
487	then
488	input_list="$input_list $run_mode"
489	output_list="$output_list $run_mode"
490	fi
491
492
493	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
494	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
495	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
496	# STARTET)
497	if [[ "$fromhost" = "" ]]
498	then
499	fromhost=$localhost
500	fi
501
502
503	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
504	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
505	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
506	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
507	if [[ -n $host && "$host" != $localhost ]]
508	then
509	do_batch=true
510	do_remote=true
511	case $host in
512	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyut\|lcsb) true;;
513	(*) printf "\n"
514	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
515	printf "\n is not available"
516	locat=nqs; (( iec = 0 )); exit;;
517	esac
518	else
519	host=$localhost
520	fi
521
522
523	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
524	if [[ -n $additional_conditions ]]
525	then
526	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
527	cond1=`echo $additional_conditions \| cut -d" " -f1`
528	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
529	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
530	if [[ -n $dummy ]]
531	then
532	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
533	locat=options; exit
534	fi
535	block=_$cond1
536	[[ -n $cond2 ]] && block=${block}_$cond2
537	fi
538
539
540	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
541	if [[ $run_coupled_model = true ]]
542	then
543
544	if [[ -n $coupled_dist ]]
545	then
546
547	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
548	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
549
550	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
551	then
552
553	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
554	printf "\n PEs (total) : $numprocs"
555	printf "\n PEs (atmosphere): $numprocs_atmos"
556	printf "\n PEs (ocean) : $numprocs_ocean"
557	locat=coupling; exit
558
559	fi
560
561	else
562
563	(( numprocs_ocean = $numprocs / 2 ))
564	(( numprocs_atmos = $numprocs / 2 ))
565
566	fi
567	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
568
569	# GET coupled_mode FROM THE CONFIG FILE
570	line=""
571	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
572	while read line
573	do
574	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
575	then
576	coupled_mode="mpi2"
577	fi
578	done < tmp_mrun
579
580	fi
581
582
583	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
584	# ARCHIVIERUNG FEHLGESCHLAGEN IST
585	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
586	then
587	if [[ $ignore_archive_error = false ]]
588	then
589	printf "\n +++ data archiving of previous run failed"
590	printf "\n see directory \~/job_queue on remote machine"
591	locat=archive; exit
592	else
593	printf "\n +++ warning: data archiving in a previous run failed"
594	printf "\n MRUN continues, trying to get backup copy"
595	fi
596	fi
597
598
599
600	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
601	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
602	if [[ "$read_from_config" = false ]]
603	then
604
605	[[ $silent = false ]] && printf "\n Reading the configuration file... "
606	while read zeile
607	do
608	[[ $silent = false ]] && printf "."
609
610
611	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
612	# ERSETZEN
613	eval zeile=\"$zeile\"
614
615
616	# INTERPRETATION DER ZEILE
617	if [[ "$(echo $zeile)" = "" ]]
618	then
619	# LEERZEILE, KEINE AKTION
620	continue
621
622	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
623	then
624
625	# ZEILE IST KOMMENTARZEILE
626	true
627
628	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
629	then
630
631	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
632	zeile=$(echo $zeile \| cut -c2-)
633	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
634	var=`echo $zeile \| cut -d" " -f1`
635	value=`echo $zeile \| cut -d" " -s -f2`
636	for_host=`echo $zeile \| cut -d" " -s -f3`
637	for_cond1=`echo $zeile \| cut -d" " -s -f4`
638	for_cond2=`echo $zeile \| cut -d" " -s -f5`
639
640	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
641	then
642
643	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
644	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
645	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
646
647
648	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
649	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
650	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
651	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
652	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
653	# KONFIGURATIONSDATEI
654	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
655	then
656	eval $var=\$value
657
658	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
659	if [[ $do_trace = true ]]
660	then
661	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
662	fi
663	fi
664
665	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
666	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
667	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
668	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
669	if [[ $var = host ]]
670	then
671	if [[ -n $host && "$host" != $localhost ]]
672	then
673	do_batch=true
674	do_remote=true
675	case $host in
676	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyut\|lcsb) true;;
677	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
678	printf "\n is not available"
679	locat=nqs; exit;;
680	esac
681	else
682	host=$localhost
683	fi
684	fi
685
686	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
687	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
688	# DEN PROGRAMMEN BENOETIGT WERDEN
689	export $var
690	fi
691
692
693
694
695	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
696	then
697
698	# ZEILE DEFINIERT ERROR-KOMMANDO
699	(( iec = iec + 1 ))
700	zeile=$(echo $zeile \| cut -c4-)
701	err_command[$iec]="$zeile"
702
703	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
704	then
705
706	# ZEILE DEFINIERT INPUT-KOMMANDO
707	(( iic = iic + 1 ))
708	zeile=$(echo $zeile \| cut -c4-)
709	in_command[$iic]="$zeile"
710
711	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
712	then
713
714	# ZEILE DEFINIERT OUTPUT-KOMMANDO
715	(( ioc = ioc + 1 ))
716	zeile=$(echo $zeile \| cut -c4-)
717	out_command[$ioc]="$zeile"
718
719	else
720
721	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
722	# s2a: in/out - Feld
723	# s2b: loc - Feld (optional)
724	# s2c: tr/ar - Feld (optional)
725	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
726	s1=`echo $zeile \| cut -d" " -f1`
727	s2=`echo $zeile \| cut -d" " -s -f2`
728	s2a=$(echo $s2 \| cut -d":" -f1)
729	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
730	then
731	s2b=""
732	s2c=""
733	else
734	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
735	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
736	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
737	fi
738	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
739	s3=`echo $zeile \| cut -d" " -f3`
740	s4=`echo $zeile \| cut -d" " -s -f4`
741	s5=`echo $zeile \| cut -d" " -s -f5`
742	s6=`echo $zeile \| cut -d" " -s -f6`
743
744
745	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
746	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
747	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
748	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
749	# HANDEN SEIN MUSS (D.H. s2b = loc)
750	IFSALT="$IFS"; IFS="$IFS:"
751	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
752	then
753	found=false
754	for actual in $input_list
755	do
756	for formal in $s3
757	do
758	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
759	done
760	done
761	if [[ $found = true ]]
762	then
763	(( iin = iin + 1 ))
764	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
765	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
766	extin[$iin]=$s6
767	fi
768	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
769	then
770	found=false
771	for actual in $output_list
772	do
773	for formal in $s3
774	do
775	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
776	done
777	done
778	if [[ $found = true ]]
779	then
780	(( iout = iout + 1 ))
781	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
782	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
783	fi
784	elif [[ "$s2a" != in && "$s2a" != out ]]
785	then
786	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
787	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
788	locat=connect; exit
789	fi
790	IFS="$IFSALT"
791	fi
792	done < $config_file
793
794	else
795
796
797	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
798	[[ $silent = false ]] && printf "..."
799	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
800	export interpreted_config_file=.icf.$RANDOM
801
802
803
804	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
805	# VERFUEGUNG STELLEN
806	cat > .mrun_environment << %%END%%
807	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
808	config_file = '$config_file', do_remote = '$do_remote',
809	do_trace = '$do_trace', host = '$host',
810	input_list = '$input_list', icf = '$interpreted_config_file',
811	localhost = '$localhost', output_list = '$output_list' /
812
813	%%END%%
814
815	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
816	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
817	mrun_memory=$memory
818	mrun_group_number=$group_number
819	mrun_cpumax=$cpumax
820	mrun_numprocs=$numprocs
821
822	if [[ $localhost_realname = "sx-fep" ]]
823	then
824	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
825	else
826
827	if [[ "$host" != $localhost ]]
828	then
829
830	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
831	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
832	if [[ $? != 0 ]]
833	then
834	printf "\n\n +++ no interpret_config found"
835	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
836	locat=interpret_config; exit
837	fi
838	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
839	$interpret_config_executable
840
841	else
842
843	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
844	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
845	then
846	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
847	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
848	locat=interpret_config; exit
849	else
850	interpret_config${block}.x
851	fi
852
853	fi
854	fi
855	rm .mrun_environment
856
857
858	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
859	chmod u+x $interpreted_config_file
860	export PATH=$PATH:.
861	. $interpreted_config_file
862	rm $interpreted_config_file
863
864
865	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
866	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
867	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
868	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
869	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
870	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
871	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
872
873	fi
874
875
876	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
877	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
878	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
879	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
880	if [[ "$SOURCES_COMPLETE" = "" ]]
881	then
882
883	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
884	# VEREINBART WURDE
885	source_path=""
886	line=""
887	grep "%source_path" $config_file > tmp_mrun
888	while read line
889	do
890	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
891	then
892	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
893	then
894	global_source_path=`echo $line \| cut -d" " -f2`
895	fi
896	fi
897	done < tmp_mrun
898
899	line=""
900	found=false
901	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
902	while read line
903	do
904	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
905	then
906	if [[ $found = true ]]
907	then
908	printf "\n\n +++ more than one source path found in configuration file"
909	printf "\n for local host \"$localhost\" "
910	locat=source_path; exit
911	fi
912	source_path=`echo $line \| cut -d" " -f2`
913	found=true
914	fi
915	done < tmp_mrun
916	rm tmp_mrun
917
918	if [[ "$source_path" = "" ]]
919	then
920	if [[ "$global_source_path" != "" ]]
921	then
922	source_path=$global_source_path
923	else
924	printf "\n\n +++ no source path found in configuration file"
925	printf "\n for local host \"$localhost\" "
926	locat=source_path; exit
927	fi
928	fi
929	eval source_path=$source_path
930
931	if [[ ! -d $source_path ]]
932	then
933	printf "\n\n +++ source path \"$source_path\" on local host"
934	printf "\n \"$localhost\" does not exist"
935	locat=source_path; exit
936	fi
937
938	fi
939
940
941	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
942	# DURCH OPTION -G MITGETEILT)
943	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
944	then
945	global_revision=`svnversion $source_path 2>/dev/null`
946	global_revision="Rev: $global_revision"
947	fi
948
949
950	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
951	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
952	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
953	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
954	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
955	if [[ -n $host && "$host" != $localhost ]]
956	then
957	do_batch=true
958	do_remote=true
959	case $host in
960	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyut\|lcsb) true;;
961	(*) printf "\n"
962	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
963	printf "\n is not available"
964	locat=nqs; (( iec = 0 )); exit;;
965	esac
966	else
967	host=$localhost
968	fi
969
970
971	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
972	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
973	then
974
975	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
976	if [[ ! -n $numprocs ]]
977	then
978	printf "\n"
979	printf "\n +++ option \"-K parallel\" requires additional specification"
980	printf "\n of the number of processors to be used by"
981	printf "\n mrun-option \"-X\" or by environment-variable"
982	printf "\n \"numprocs\" in the configuration file"
983	locat=numprocs; (( iec = 0 )); exit
984	fi
985
986	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
987	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
988	# GESAMTPROZESSORANZAHL IST
989	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
990	then
991	printf "\n"
992	printf "\n +++ option \"-T\" (tasks per node) is missing"
993	printf "\n set -T option or define tasks_per_node in the config file"
994	locat=tasks_per_node; (( iec = 0 )); exit
995	fi
996	if [[ $host != lcflow && $host != lcxt5m ]]
997	then
998	(( ival = $tasks_per_node ))
999	(( pes = numprocs ))
1000	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1001	# then
1002	# (( pes = pes - 1 ))
1003	# fi
1004	(( ii = pes / ival ))
1005	if (( pes - ii * ival > 0 ))
1006	then
1007	printf "\n"
1008	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1009	printf "\n divisor of the total number of processors (option \"-X\")"
1010	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1011	locat=tasks_per_node; (( iec = 0 )); exit
1012	fi
1013	fi
1014
1015
1016	# IBMY HAT NUR EINEN KNOTEN
1017	if [[ $host = ibmy ]]
1018	then
1019	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1020	then
1021	printf "\n"
1022	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1023	printf "\n total number of processors (option \"-X\")"
1024	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1025	locat=tasks_per_node; (( iec = 0 )); exit
1026	fi
1027	fi
1028
1029
1030	# SETTINGS FOR SUBJOB-COMMAND
1031	TOPT="-T $tasks_per_node"
1032	OOPT="-O $threads_per_task"
1033
1034	# GESAMTZAHL DER KNOTEN BESTIMMEN
1035	if [[ "$tasks_per_node" != "" ]]
1036	then
1037	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1038	fi
1039
1040	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1041	# SETZEN
1042	if [[ $node_usage = default ]]
1043	then
1044	if [[ $host = ibms ]]
1045	then
1046	node_usage=shared
1047	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1048	then
1049	node_usage=singlejob
1050	else
1051	node_usage=not_shared
1052	fi
1053	fi
1054
1055	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1056	then
1057	printf "\n"
1058	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1059	printf "\n \"shared\" or \"not_shared\""
1060	locat=tasks_per_node; (( iec = 0 )); exit
1061	fi
1062
1063	fi
1064
1065	# PRUEFEN, OB HOSTFILE EXISTIERT
1066	if [[ -n $hostfile ]]
1067	then
1068	if [[ ! -f $hostfile ]]
1069	then
1070	printf "\n"
1071	printf "\n +++ hostfile \"$hostfile\" does not exist"
1072	locat=hostfile; exit
1073	fi
1074	fi
1075
1076	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1077	if [[ $host = ibmy && $do_remote = false ]]
1078	then
1079	if [[ ! -f $HOME/.rhosts ]]
1080	then
1081	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1082	printf "\n\n *** file:"
1083	printf "\n $HOME/.rhosts"
1084	printf "\n was created\n"
1085	fi
1086	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1087	then
1088	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1089	printf "\n\n *** file:"
1090	printf "\n $HOME/.rhosts"
1091	printf "\n was extended by the name of the current host\n"
1092	fi
1093	fi
1094
1095
1096	# Set default value for the maximum number of parallel io streams
1097	if [[ "$maximum_parallel_io_streams" = "" ]]
1098	then
1099	maximum_parallel_io_streams=$numprocs
1100	fi
1101
1102
1103	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1104	if [[ "$scp_port" != "" ]]
1105	then
1106	PORTOPT="-P $scp_port"
1107	SSH_PORTOPT="-p $scp_port"
1108	fi
1109
1110
1111	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1112	if [[ $queue = none ]]
1113	then
1114	case $host in
1115	(ibmh) queue=no_class;;
1116	(ibmkisti) queue=class.32plus;;
1117	(ibmy) queue=parallel;;
1118	(lckiaps) queue=normal;;
1119	(lckyoto) queue=ph;;
1120	(lckyut) queue=cx-dbg;;
1121	(lcsgib) queue=testq;;
1122	(lcsgih) queue=testq;;
1123	(lctit) queue=S;;
1124	(nech) queue=none;;
1125	(necriam) queue=SP;;
1126	(unics) queue=unics;;
1127	esac
1128	fi
1129
1130
1131	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1132	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1133	# ERMITTELN
1134	(( i = 0 ))
1135	while (( i < iin ))
1136	do
1137	(( i = i + 1 ))
1138	(( maxcycle = 0 ))
1139
1140	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1141	if [[ "${actionin[$i]}" = di ]]
1142	then
1143	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1144	# REM-MASCHINE AUSWERTEN
1145	eval filename=${pathin[$i]}/${endin[$i]}
1146	else
1147	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1148	# REM-MASCHINE AUSWERTEN
1149	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1150	fi
1151	eval pathname=${pathin[$i]}
1152
1153	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1154	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1155	then
1156	filename_input=$filename
1157	fi
1158
1159	# PRUEFEN AUF VORHANDENSEIN
1160	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1161	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1162	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1163	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1164	then
1165	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1166	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1167	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1168	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1169	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1170	if [[ "${transin[$i]}" != "locopt" ]]
1171	then
1172	printf "\n\n +++ INPUT-file: "
1173	if [[ "${extin[$i]}" = "" ]]
1174	then
1175	printf "\n $filename"
1176	else
1177	printf "\n $filename.${extin[$i]}"
1178	fi
1179	printf "\n does not exist\n"
1180	locat=input; exit
1181	else
1182	transin[$i]="unavailable"
1183	fi
1184	else
1185
1186	# ZYKLUSNUMMER FESTSTELLEN
1187	ls -1 -d $filename > filelist 2>/dev/null
1188	ls -1 -d $filename.* >> filelist 2>/dev/null
1189	while read zeile
1190	do
1191	cycle=$(print $zeile \| cut -f2 -d".")
1192	if [[ "$cycle" = "$zeile" ]]
1193	then
1194	(( icycle = 0 ))
1195	elif [[ "$cycle" = "${extin[$i]}" ]]
1196	then
1197	(( icycle = 0 ))
1198	else
1199	(( icycle = $cycle ))
1200	fi
1201	if (( icycle > maxcycle ))
1202	then
1203	(( maxcycle = icycle ))
1204	file_to_be_used=$zeile
1205	fi
1206	done <filelist
1207	rm filelist
1208
1209	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1210	if (( maxcycle > 0 ))
1211	then
1212	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1213	then
1214	filename=${filename}.$maxcycle.${extin[$i]}
1215	else
1216	filename=${filename}.$maxcycle
1217	fi
1218	else
1219	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1220	then
1221	filename=${filename}.${extin[$i]}
1222	fi
1223	fi
1224
1225	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1226	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1227	absnamein[$i]=$filename
1228	if (( maxcycle > 0 ))
1229	then
1230	if [[ "${actionin[$i]}" = di ]]
1231	then
1232	frelin[$i]=${endin[$i]}.$maxcycle
1233	else
1234	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1235	fi
1236	else
1237	if [[ "${actionin[$i]}" = di ]]
1238	then
1239	frelin[$i]=${endin[$i]}
1240	else
1241	frelin[$i]=${afname}${endin[$i]}
1242	fi
1243	fi
1244
1245	fi
1246	done
1247
1248	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1249	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1250	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1251	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1252	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1253	(( i = 0 ))
1254	while (( i < iout ))
1255	do
1256	(( i = i + 1 ))
1257	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1258	then
1259	if [[ "${actionout[$i]}" = tr ]]
1260	then
1261	actionout[$i]=""
1262	elif [[ "${actionout[$i]}" = trpe ]]
1263	then
1264	actionout[$i]=pe
1265	elif [[ "${actionout[$i]}" = tra ]]
1266	then
1267	actionout[$i]=a
1268	fi
1269	(( maxcycle = 0 ))
1270	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1271	eval catalogname=${pathout[$i]}
1272	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1273	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1274	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1275	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1276	then
1277
1278	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1279	if cat /dev/null > $filename
1280	then
1281	rm $filename
1282	else
1283
1284	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1285	if [[ ! -d $catalogname ]]
1286	then
1287	if mkdir -p $catalogname
1288	then
1289	printf "\n\n *** directory:"
1290	printf "\n $catalogname"
1291	printf "\n was created\n"
1292	else
1293	printf "\n\n +++ OUTPUT-file:"
1294	printf "\n $filename"
1295	printf "\n cannot be created, because directory does not exist"
1296	printf "\n and cannot be created either"
1297	printf "\n"
1298	locat=output ; exit
1299	fi 2>/dev/null
1300	else
1301	printf "\n\n +++ OUTPUT-file:"
1302	printf "\n $filename"
1303	printf "\n cannot be created, although directory exists"
1304	printf "\n"
1305	locat=output ; exit
1306	fi
1307	fi 2>/dev/null
1308	else
1309
1310	# ZYKLUSNUMMER FESTSTELLEN
1311	ls -1 -d $filename > filelist 2>/dev/null
1312	ls -1 -d $filename.* >> filelist 2>/dev/null
1313	while read zeile
1314	do
1315	cycle=$(print $zeile \| cut -f2 -d".")
1316	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1317	then
1318	(( icycle = 1 ))
1319	else
1320	(( icycle = $cycle + 1 ))
1321	fi
1322	if (( icycle > maxcycle ))
1323	then
1324	(( maxcycle = icycle ))
1325	fi
1326	done <filelist
1327	rm filelist
1328	fi
1329
1330	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1331	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1332	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1333	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1334	if [[ "${actionout[$i]}" != a ]]
1335	then
1336	if (( maxcycle > 0 ))
1337	then
1338	filename=${filename}.$maxcycle
1339	if cat /dev/null > $filename
1340	then
1341	rm $filename
1342	else
1343	printf "\n +++ OUTPUT-file:"
1344	printf "\n $filename"
1345	printf "\n cannot be created"
1346	locat=output ; exit
1347	fi
1348	fi
1349	else
1350	(( maxcycle = maxcycle - 1 ))
1351	if (( maxcycle > 0 ))
1352	then
1353	filename=${filename}.$maxcycle
1354	fi
1355	fi
1356
1357	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1358	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1359	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1360	pathout[$i]=$filename
1361	if (( maxcycle > 0 ))
1362	then
1363	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1364	else
1365	frelout[$i]=${fname}${endout[$i]}
1366	fi
1367
1368	fi
1369	done
1370
1371
1372	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1373	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1374	then
1375	if [[ "$dvr_inc" = "" ]]
1376	then
1377	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1378	printf "\n This is required for the dvrp_graphics package.\n"
1379	locat=dvr; exit
1380	fi
1381	if [[ "$dvr_lib" = "" ]]
1382	then
1383	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1384	printf "\n This is required for the dvrp_graphics package.\n"
1385	locat=dvr; exit
1386	fi
1387	fi
1388
1389
1390	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1391	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1392	# UEBERSETZT ZU WERDEN)
1393	if [[ "$mainprog" = "" && "$executable" = "" ]]
1394	then
1395	printf "\n +++ neither main program nor executable defined"
1396	locat=source; exit
1397	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1398	then
1399	printf "\n +++ main program as well as executable defined"
1400	locat=source; exit
1401	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1402	then
1403	do_compile=false
1404	fi
1405
1406
1407	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1408	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1409	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1410	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1411	then
1412	rm -rf SOURCES_FOR_RUN_$fname
1413	mkdir SOURCES_FOR_RUN_$fname
1414	fi
1415
1416
1417	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1418	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1419	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1420	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1421	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1422	then
1423
1424	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1425
1426	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1427	then
1428
1429	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1430	source_list=""
1431	cd $source_path
1432
1433
1434	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1435	if [[ ! -d .svn ]]
1436	then
1437	printf "\n\n +++ source directory"
1438	printf "\n \"$source_path\" "
1439	printf "\n is not under control of \"subversion\"."
1440	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1441	fi
1442
1443
1444	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1445	Filenames=""
1446	svn status > tmp_mrun
1447	while read line
1448	do
1449	firstc=`echo $line \| cut -c1`
1450	if [[ $firstc = M \|\| $firstc = "?" ]]
1451	then
1452	Name=`echo "$line" \| cut -c8-`
1453	extension=`echo $Name \| cut -d. -f2`
1454	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1455	then
1456	Filenames="$Filenames "$Name
1457	fi
1458	fi
1459	done < tmp_mrun
1460
1461
1462	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1463	for dateiname in $Filenames
1464	do
1465	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1466	source_list=$source_list"$dateiname "
1467	done
1468
1469	cd - > /dev/null
1470
1471
1472	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1473	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1474	# VORHANDEN
1475	elif [[ "$source_list" != "" && $restart_run != true ]]
1476	then
1477
1478	cd $source_path
1479
1480	for filename in $source_list
1481	do
1482
1483	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1484	if [[ $(print $filename \| grep -c "/") != 0 ]]
1485	then
1486	printf "\n +++ source code file: $filename"
1487	printf "\n must not contain (\"/\") "
1488	locat=source; exit
1489	fi
1490
1491	if [[ ! -f $filename ]]
1492	then
1493	printf "\n +++ source code file: $filename"
1494	printf "\n does not exist"
1495	locat=source; exit
1496	else
1497	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1498	fi
1499
1500	done
1501
1502	cd - > /dev/null
1503
1504	fi
1505
1506
1507	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1508	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1509	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1510	if [[ $restart_run != true ]]
1511	then
1512
1513	if [[ ! -f "$source_path/$mainprog" ]]
1514	then
1515	printf "\n\n +++ main program: $mainprog"
1516	printf "\n does not exist in source directory"
1517	printf "\n \"$source_path\"\n"
1518	locat=source; exit
1519	else
1520	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1521	then
1522	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1523	source_list=${mainprog}" $source_list"
1524	fi
1525	fi
1526	fi
1527
1528
1529	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1530	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1531	if [[ "$restart_run" != true ]]
1532	then
1533	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1534	if [[ ! -f $makefile ]]
1535	then
1536	printf "\n +++ file \"$makefile\" does not exist"
1537	locat=make; exit
1538	else
1539	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1540	fi
1541	fi
1542
1543
1544	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1545	if [[ $restart_run != true && "$add_source_path" != "" ]]
1546	then
1547
1548	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1549	if [[ ! -d $add_source_path ]]
1550	then
1551	printf "\n\n +++ WARNING: additional source code directory"
1552	printf "\n \"$add_source_path\" "
1553	printf "\n does not exist or is not a directory."
1554	printf "\n No source code will be used from this directory!\n"
1555	add_source_path=""
1556	if [[ $silent == false ]]
1557	then
1558	sleep 3
1559	fi
1560	else
1561
1562	cd $add_source_path
1563	found=false
1564
1565	Names=$(ls -1 *.f90 2>&1)
1566	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1567	Names=$(ls -1 *.F90 2>&1)
1568	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1569	Names=$(ls -1 *.F 2>&1)
1570	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1571	Names=$(ls -1 *.f 2>&1)
1572	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1573	Names=$(ls -1 *.c 2>&1)
1574	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1575
1576	cd - > /dev/null
1577	cd SOURCES_FOR_RUN_$fname
1578
1579	# COPY MAKEFILE IF EXISTING
1580	if [[ -f $add_source_path/Makefile ]]
1581	then
1582	printf "\n\n *** user Makefile from directory"
1583	printf "\n \"$add_source_path\" is used \n"
1584	if [[ $silent == false ]]
1585	then
1586	sleep 1
1587	fi
1588	cp $add_source_path/Makefile .
1589	fi
1590
1591	for dateiname in $AddFilenames
1592	do
1593	if [[ -f $dateiname ]]
1594	then
1595	printf "\n +++ source code file \"$dateiname\" found in additional"
1596	printf "\n source code directory \"$add_source_path\" "
1597	printf "\n but was also given with option \"-s\" which means that it should be taken"
1598	printf "\n from directory \"$source_path\"."
1599	locat=source; exit
1600	fi
1601
1602	cp $add_source_path/$dateiname .
1603	source_list="$source_list $dateiname"
1604
1605	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1606	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1607	then
1608	printf "\n\n +++ user file \"$dateiname\" "
1609	printf "\n is not listed in Makefile \n"
1610	locat=source; exit
1611	else
1612
1613	# Default User-Interface von der Liste entfernen, falls Datei
1614	# ein User-Interface enthaelt
1615	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1616	# then
1617	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1618	# then
1619	# rm -rf user_interface.f90
1620	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1621	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1622	# printf "\n since a user-interface is found in file"
1623	# printf "\n \"$add_source_path/$dateiname\" \n"
1624	# sleep 3
1625	# else
1626	if [[ $found = false ]]
1627	then
1628	found=true
1629	printf "\n\n *** following user file(s) added to the"
1630	printf " files to be translated:\n "
1631	fi
1632	printf "$dateiname "
1633	if [[ $silent == false ]]
1634	then
1635	sleep 0.5
1636	fi
1637
1638	fi
1639	done
1640	[[ $found = true ]] && printf "\n"
1641	cd - > /dev/null
1642	fi
1643	fi
1644
1645
1646	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1647	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1648	if [[ $restart_run != true && -n $package_list ]]
1649	then
1650
1651	cd $source_path
1652
1653	for package in $package_list
1654	do
1655
1656	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1657
1658	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1659	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1660	# LIEFERT
1661	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1662
1663
1664	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1665	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1666	for source_list_name in $package_source_list
1667	do
1668	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1669	then
1670
1671	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1672	ending=`echo $source_list_name \| cut -f2 -d.`
1673	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1674	then
1675	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1676	source_list="$source_list $source_list_name"
1677	fi
1678	fi
1679	done
1680	done
1681
1682	cd - > /dev/null
1683	fi
1684
1685
1686	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1687	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1688	# if [[ "$restart_run" != true ]]
1689	# then
1690	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1691	# if [[ ! -f $makefile ]]
1692	# then
1693	# printf "\n +++ file \"$makefile\" does not exist"
1694	# locat=make; exit
1695	# else
1696	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1697	# fi
1698	# fi
1699
1700	fi # do_compile=true
1701
1702
1703	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1704	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1705	if [[ $do_compile = true ]]
1706	then
1707
1708	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1709	# ZUSAMMENSETZEN
1710	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1711	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1712	then
1713	cpp_options="${cpp_options},-D__ibm=__ibm"
1714	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1715	then
1716	cpp_options="$cpp_options -D__nec"
1717	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1718	then
1719	cpp_options="$cpp_options -D__lc"
1720	else
1721	cpp_options="$cpp_options -D__$localhost"
1722	fi
1723
1724	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1725	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1726	then
1727	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1728	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1729	else
1730	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1731	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1732	fi
1733
1734	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1735	if [[ -n $package_list ]]
1736	then
1737	for package in $package_list
1738	do
1739	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1740	then
1741	if [[ $package != "dvrp_graphics+1PE" ]]
1742	then
1743	cpp_options="${cpp_options},-D__$package=__$package"
1744	else
1745	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1746	export use_seperate_pe_for_dvrp_output=true
1747	fi
1748	else
1749	if [[ $package != "dvrp_graphics+1PE" ]]
1750	then
1751	cpp_options="$cpp_options -D__$package"
1752	else
1753	cpp_options="$cpp_options -D__dvrp_graphics"
1754	export use_seperate_pe_for_dvrp_output=true
1755	fi
1756	fi
1757	done
1758	fi
1759
1760	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1761	if [[ -n $cpp_opts ]]
1762	then
1763	for popts in $cpp_opts
1764	do
1765	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1766	then
1767	cpp_options="${cpp_options},-D__$popts=__$popts"
1768	else
1769	cpp_options="$cpp_options -D__$popts"
1770	fi
1771	done
1772	fi
1773
1774	else
1775
1776
1777	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1778	if [[ $do_remote = false ]]
1779	then
1780	if [[ ! -f $executable ]]
1781	then
1782	printf "\n +++ executable file: $executable"
1783	printf "\n does not exist"
1784	locat=executable; exit
1785	fi
1786	fi
1787	fi
1788
1789
1790	# JOBMODUS FESTSTELLEN
1791	if [[ "$ENVIRONMENT" = BATCH ]]
1792	then
1793	jobmo=BATCH
1794	else
1795	jobmo=INTERACTIVE
1796	fi
1797
1798
1799	# no interactive runs on lctit
1800	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1801	then
1802	printf "\n +++ no interactive runs allowed on host \"$host\" "
1803	printf "\n please submit batch job using mrun option \"-b\" \n"
1804	locat=normal; exit
1805	fi
1806
1807
1808	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1809	# DURCH BENUTZER ANDERWEITIG VEREINBART
1810	if [[ "$compiler_name" = "" ]]
1811	then
1812
1813	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1814	locat=compiler_name; exit
1815
1816	fi
1817
1818
1819	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1820	[[ $localhost = necriam ]] && compiler_name=mpif90
1821
1822
1823
1824	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1825	kennung=$RANDOM
1826	if [[ "$tmp_user_catalog" = "" ]]
1827	then
1828	if [[ $localhost = ibmh ]]
1829	then
1830	tmp_user_catalog=$SCRATCH
1831	elif [[ $localhost = nech ]]
1832	then
1833	tmp_user_catalog=$WRKSHR
1834	else
1835	tmp_user_catalog=/tmp
1836	fi
1837	fi
1838	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1839
1840
1841	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1842	# BESTIMMEN
1843	if [[ "$tmp_data_catalog" = "" ]]
1844	then
1845	if [[ $localhost = nech ]]
1846	then
1847	tmp_data_catalog=$WRKSHR/mrun_restart_data
1848	else
1849	tmp_data_catalog=/tmp/mrun_restart_data
1850	fi
1851	fi
1852
1853
1854	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1855	# ERSETZEN
1856	if [[ $do_remote = false && $do_compile = true ]]
1857	then
1858	eval fopts=\"$fopts\"
1859	eval lopts=\"$lopts\"
1860	fi
1861
1862
1863
1864	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1865	fopts="$fopts $netcdf_inc $dvr_inc"
1866	lopts="$lopts $netcdf_lib $dvr_lib"
1867	ROPTS="$ropts"
1868	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1869	# then
1870	XOPT="-X $numprocs"
1871	# fi
1872
1873
1874
1875	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1876	# GRAMM BENOETIGT
1877	done=false
1878	while [[ $done = false ]]
1879	do
1880	cputime=$cpumax
1881	if (( $cputime == 0 ))
1882	then
1883	if [[ $do_batch = true ]]
1884	then
1885	printf "\n +++ cpu-time is undefined"
1886	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1887	printf "\n >>> "
1888	read cputime 1>/dev/null 2>&1
1889	else
1890	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1891	fi
1892	else
1893	done=true
1894	fi
1895	cpumax=$cputime
1896	done
1897
1898	(( minuten = cputime / 60 ))
1899	(( sekunden = cputime - minuten * 60 ))
1900
1901
1902	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1903	if [[ $do_batch = true ]]
1904	then
1905	done=false
1906	while [[ $done = false ]]
1907	do
1908	if (( memory == 0 ))
1909	then
1910	printf "\n +++ memory demand is undefined"
1911	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1912	printf "\n >>> "
1913	read memory 1>/dev/null 2>&1
1914	else
1915	done=true
1916	fi
1917	done
1918	fi
1919
1920
1921	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1922	if [[ $do_remote = true && -z $remote_username ]]
1923	then
1924	while [[ -z $remote_username ]]
1925	do
1926	printf "\n +++ username on remote host \"$host\" is undefined"
1927	printf "\n >>> Please type username:"
1928	printf "\n >>> "
1929	read remote_username
1930	done
1931	mc="$mc -u$remote_username"
1932	fi
1933
1934	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1935	if [[ "$login_init_cmd" != "" ]]
1936	then
1937	export init_cmds="${login_init_cmd};"
1938	fi
1939
1940
1941	# set module load command and export for subjob
1942	if [[ "$modules" != "" ]]
1943	then
1944	if [[ $host = lctit ]]
1945	then
1946	export module_calls=". $modules"
1947	else
1948	export module_calls="module load ${modules};"
1949	fi
1950	fi
1951
1952	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1953	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1954	then
1955	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1956	then
1957	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1958	fi
1959	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1960	# then
1961	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1962	# echo "*** module_calls = $module_calls"
1963	# fi
1964	fi
1965
1966
1967	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
1968	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1969	then
1970	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
1971	then
1972	mpilib=mpt
1973	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
1974	then
1975	mpilib=mvapich
1976	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
1977	then
1978	mpilib=impi
1979	fi
1980	fi
1981
1982
1983
1984	###########################################################################
1985	# HEADER-AUSGABE
1986	###########################################################################
1987
1988
1989	calltime=$(date)
1990	printf "\n"
1991	# [[ $silent = false ]] && clear
1992	printf "#--------------------------------------------------------------# \n"
1993	printf "\| $version$calltime \| \n"
1994	printf "\| \| \n"
1995	spalte1="called on:"; spalte2=$localhost_realname
1996	printf "\| $spalte1$spalte2 \| \n"
1997	if [[ $local_compile = false ]]
1998	then
1999	if [[ $do_remote = true ]]
2000	then
2001	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2002	else
2003	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2004	fi
2005	else
2006	spalte1="compiling test only!"; spalte2=""
2007	fi
2008	printf "\| $spalte1$spalte2 \| \n"
2009	if [[ -n $numprocs ]]
2010	then
2011	spalte1="number of PEs:"; spalte2=$numprocs
2012	printf "\| $spalte1$spalte2 \| \n"
2013	fi
2014	if [[ -n $tasks_per_node ]]
2015	then
2016	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2017	printf "\| $spalte1$spalte2 \| \n"
2018	fi
2019	if [[ $maximum_parallel_io_streams != $numprocs ]]
2020	then
2021	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2022	printf "\| $spalte1$spalte2 \| \n"
2023	fi
2024	if [[ $use_openmp = true ]]
2025	then
2026	spalte1="threads per task:"; spalte2="$threads_per_task"
2027	printf "\| $spalte1$spalte2 \| \n"
2028	fi
2029	printf "\| \| \n"
2030	if [[ $do_compile = true ]]
2031	then
2032	if [[ "$mopts" != "" ]]
2033	then
2034	spalte1="make options:"; spalte2=$mopts
2035	printf "\| $spalte1$spalte2 \| \n"
2036	zeile=$(echo "$mopts" \| cut -c41-)
2037	while [[ "$zeile" != "" ]]
2038	do
2039	spalte1=""
2040	spalte2=$zeile
2041	printf "\| $spalte1$spalte2 \| \n"
2042	zeile=$(echo "$zeile" \| cut -c41-)
2043	done
2044	fi
2045
2046	spalte1="cpp directives:"; spalte2=$cpp_options
2047	printf "\| $spalte1$spalte2 \| \n"
2048	zeile=$(echo "$cpp_options" \| cut -c41-)
2049	while [[ "$zeile" != "" ]]
2050	do
2051	spalte1=""
2052	spalte2=$zeile
2053	printf "\| $spalte1$spalte2 \| \n"
2054	zeile=$(echo "$zeile" \| cut -c41-)
2055	done
2056
2057	spalte1="compiler options:"; spalte2="$fopts"
2058	printf "\| $spalte1$spalte2 \| \n"
2059	zeile=$(echo "$fopts" \| cut -c41-)
2060	while [[ "$zeile" != "" ]]
2061	do
2062	spalte1=""
2063	spalte2=$zeile
2064	printf "\| $spalte1$spalte2 \| \n"
2065	zeile=$(echo "$zeile" \| cut -c41-)
2066	done
2067
2068	spalte1="linker options:"; spalte2=$lopts
2069	printf "\| $spalte1$spalte2 \| \n"
2070	zeile=$(echo "$lopts" \| cut -c41-)
2071	while [[ "$zeile" != "" ]]
2072	do
2073	spalte1=""
2074	spalte2=$zeile
2075	printf "\| $spalte1$spalte2 \| \n"
2076	zeile=$(echo "$zeile" \| cut -c41-)
2077	done
2078
2079	spalte1="modules to be load:"; spalte2=$modules
2080	printf "\| $spalte1$spalte2 \| \n"
2081	zeile=$(echo "$modules" \| cut -c41-)
2082	while [[ "$zeile" != "" ]]
2083	do
2084	spalte1=""
2085	spalte2=$zeile
2086	printf "\| $spalte1$spalte2 \| \n"
2087	zeile=$(echo "$zeile" \| cut -c41-)
2088	done
2089
2090	spalte1="main program":; spalte2=$mainprog
2091	printf "\| $spalte1$spalte2 \| \n"
2092	else
2093	spalte1=executable:; spalte2=$executable
2094	printf "\| $spalte1$spalte2 \| \n"
2095	fi
2096	printf "\| \| \n"
2097	spalte1="base name of files":; spalte2=$fname
2098	printf "\| $spalte1$spalte2 \| \n"
2099	if [[ $fname != $afname ]]
2100	then
2101	spalte1="base name of input files":; spalte2=$afname
2102	printf "\| $spalte1$spalte2 \| \n"
2103	fi
2104	spalte1="INPUT control list":; spalte2=$input_list
2105	printf "\| $spalte1$spalte2 \| \n"
2106	spalte1="OUTPUT control list":; spalte2=$output_list
2107	printf "\| $spalte1$spalte2 \| \n"
2108
2109	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2110	then
2111	spalte1="memory demand / PE":; spalte2="$memory MB"
2112	printf "\| $spalte1$spalte2 \| \n"
2113	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2114	printf "\| $spalte1$spalte2 \| \n"
2115	fi
2116
2117	if [[ $do_compile = true ]]
2118	then
2119	printf "\| \| \n"
2120	printf "\| Files to be compiled: \| \n"
2121	zeile=$source_list
2122	while [[ "$zeile" != "" ]]
2123	do
2124	spalte3=$zeile
2125	printf "\| $spalte3 \| \n"
2126	zeile=$(echo "$zeile" \| cut -c61-)
2127	done
2128	fi
2129	printf "#--------------------------------------------------------------#"
2130
2131
2132
2133	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2134	if [[ $do_trace = true ]]
2135	then
2136	(( i = 0 ))
2137	while (( i < iin ))
2138	do
2139	(( i = i + 1 ))
2140	if (( i == 1 ))
2141	then
2142	printf "\n\n >>> INPUT-file assignments:\n"
2143	fi
2144	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2145	done
2146	(( i = 0 ))
2147	while (( i < iout ))
2148	do
2149	(( i = i + 1 ))
2150	if (( i == 1 ))
2151	then
2152	printf "\n\n >>> OUTPUT-file assignments:\n"
2153	fi
2154	printf "\n ${localout[$i]} : ${pathout[$i]}"
2155	done
2156	(( i = 0 ))
2157	while (( i < iic ))
2158	do
2159	(( i = i + 1 ))
2160	if (( i == 1 ))
2161	then
2162	printf "\n\n >>> INPUT-commands:\n"
2163	fi
2164	printf "\n ${in_command[$i]}"
2165	done
2166	(( i = 0 ))
2167	while (( i < ioc ))
2168	do
2169	(( i = i + 1 ))
2170	if (( i == 1 ))
2171	then
2172	printf "\n\n >>> OUTPUT-commands:\n"
2173	fi
2174	printf "\n ${out_command[$i]}"
2175	done
2176	fi
2177
2178
2179	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2180	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2181	then
2182	antwort=dummy
2183	printf "\n\n"
2184	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2185	do
2186	printf " >>> everything o.k. (y/n) ? "
2187	read antwort
2188	done
2189	if [[ $antwort = n \|\| $antwort = N ]]
2190	then
2191	locat=user_abort; (( iec = 0 )); exit
2192	fi
2193	if [[ $do_batch = true ]]
2194	then
2195	printf " >>> batch-job will be created and submitted"
2196	else
2197	if [[ $local_compile = false ]]
2198	then
2199	printf " >>> MRUN will now continue to execute on this machine"
2200	else
2201	printf " >>> a test compilation will now be carried out on this machine"
2202	fi
2203	fi
2204	fi
2205
2206	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2207
2208	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2209	check_depository="${working_directory}/trunk/UTIL"
2210	check_sources="${working_directory}/tmp_check_namelist_files"
2211	skip_check=false
2212
2213	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2214	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2215	then
2216	skip_check=true
2217	reason="run on remote host or parameter file check has not been compiled."
2218	fi
2219	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2220	then
2221	skip_check=true
2222	reason="parameter file check has not been compiled."
2223	fi
2224
2225	#CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2226	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2227	then
2228	skip_check=true
2229	reason="serial run."
2230	fi
2231
2232	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
2233	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2234	if [[ $check_namelist_files == false ]]
2235	then
2236	skip_check=true
2237	reason="-z option set."
2238	fi
2239
2240	if [[ $fromhost != $localhost ]]
2241	then
2242	skip_check=true
2243	reason="submitting host is local host."
2244	fi
2245
2246	if [[ $run_coupled_model == true ]]
2247	then
2248	skip_check=true
2249	reason="coupled run."
2250	fi
2251
2252	if [[ $restart_run == true ]]
2253	then
2254	skip_check=true
2255	reason="restart run."
2256
2257	fi
2258
2259	#SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2260	((last_char = `echo $filename_input \| wc -c` - 1))
2261	last_char=`echo $filename_input \|cut -c$last_char`
2262	if [[ "$last_char" == "f" ]]
2263	then
2264	skip_check=true
2265	reason="restart run."
2266	fi
2267
2268	if [[ $skip_check == false ]]
2269	then
2270
2271	tmp_check=${working_directory}/tmp_check
2272
2273	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2274	# NOT NECESSARILY REQUIRED
2275	line=""
2276	found=false
2277	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2278	while read line1
2279	do
2280	line="$line1"
2281	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2282	then
2283	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2284	found=true
2285	fi
2286	done < $tmp_check
2287
2288	if [[ $found = false ]]
2289	then
2290	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2291	fi
2292
2293	rm -rf ${working_directory}/tmp_check
2294
2295	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2296	for item in $input_list
2297	do
2298	if [[ "$item" == "restart" ]]
2299	then
2300	check_restart=1
2301	else
2302	check_restart=0
2303	fi
2304	done
2305
2306	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2307	if [[ (! -f $filename_input) && ( "$filename_input" != "") ]]
2308	then
2309	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2310	locat=check_namelist; exit
2311	fi
2312
2313	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2314	if [[ $check_restart == 1 ]]
2315	then
2316
2317
2318
2319	filenamef="${filename_input}f"
2320	if [[ ! -f $filenamef ]]
2321	then
2322	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2323	check_restart=0
2324	answer=dummy
2325	printf "\n\n"
2326
2327	if [[ $silent == false ]]
2328	then
2329	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2330	do
2331	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2332	read answer
2333	done
2334	if [[ $answer = a \|\| $answer = A ]]
2335	then
2336	printf "\n +++ Aborting...."
2337	locat=normal; exit
2338	fi
2339	fi
2340	else
2341	check_restart=1
2342	fi
2343	fi
2344
2345	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2346	mkdir $check_sources
2347	cd $check_sources
2348
2349
2350	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2351	if [[ -d $add_source_path ]]
2352	then
2353	printf "\n\n *** copying files from $check_depository"
2354	cp $check_depository/check_namelist_files.tar ./
2355
2356	printf "\n\n *** untar of makefile and source files in $check_sources"
2357	tar -xf check_namelist_files.tar > /dev/null 2>&1
2358
2359	printf "\n\n *** adding user code."
2360	cp $add_source_path/* ./
2361	touch check_namelist_files.f90
2362
2363	# GET COMPILER OPTIONS AND PERFORM MAKE
2364	printf "\n\n *** compiling code if necessary...\n"
2365
2366	# workaround for batch jobs on local machine (lcxe6)
2367	if [[ $do_batch == true && $do_remote == false ]]
2368	then
2369	eval $init_cmds
2370	fi
2371
2372	# GET CHECK OPTIONS
2373	line=""
2374	found=false
2375
2376	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2377
2378	while read line1
2379	do
2380
2381	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2382	then
2383	line="$line1"
2384	fi
2385
2386	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2387	then
2388	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2389	line="$line "
2390	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2391	found=true
2392	fi
2393
2394	done < $tmp_check
2395	copts_check="$copts_check -D__check -D__parallel"
2396
2397	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2398
2399	# GET MAKE OUTPUT
2400	if [[ $? != 0 ]]
2401	then
2402	printf "\n +++ error during make."
2403	answer=dummy
2404	printf "\n\n"
2405	if [[ $silent == false ]]
2406	then
2407	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2408	do
2409	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2410	read answer
2411	done
2412	if [[ $answer = a \|\| $answer = A ]]
2413	then
2414	printf "\n +++ Aborting..."
2415	rm -rf $check_sources
2416	locat=normal; exit
2417	else
2418	skip_check=true
2419	fi
2420	else
2421	skip_check=true
2422	fi
2423	fi
2424	else
2425	cp $PALM_BIN/check_namelist_files.x ./
2426	fi
2427
2428	cp $filename_input ./PARIN
2429	if [[ $check_restart == 1 ]]
2430	then
2431	cp $filenamef ./PARINF
2432	fi
2433
2434	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2435	then
2436	printf "\n *** adding topography data"
2437	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2438
2439	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2440	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2441	# WHICH REQUIRE SUFFICIENT MEMORY
2442	ulimit -s unlimited
2443	fi
2444
2445	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2446	cat > ENVPAR << %%END%%
2447	&envpar run_identifier = '$fname', host = '$host',
2448	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2449	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2450	maximum_cpu_time_allowed = ${cpumax}.,
2451	revision = '$global_revision',
2452	local_dvrserver_running = $local_dvrserver_running /
2453
2454	%%END%%
2455
2456	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2457	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2458	printf "\n +++ WARNING: check_namelist_files.x not found."
2459	answer=dummy
2460	printf "\n\n"
2461
2462	if [[ $silent == false ]]
2463	then
2464	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2465	do
2466	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2467	read answer
2468	done
2469	if [[ $answer = a \|\| $answer = A ]]
2470	then
2471	printf "\n +++ Aborting..."
2472	rm -rf $check_sources
2473	locat=normal; exit
2474	else
2475	printf "\n *** skipping parameter file check."
2476
2477	fi
2478	fi
2479
2480	elif [[ $skip_check == false ]]
2481	then
2482	# STARTING THE PARAMETER FILE CHECK
2483	printf "\n\n *** starting parameter file check..."
2484
2485	# CHECKING THE P3D FILE
2486	printf "\n\n (1) checking $filename_input"
2487	echo "$numprocs 0 0" > VARIN
2488	errors=`./check_namelist_files.x < VARIN 2>&1`
2489
2490	check_error=false
2491	if [[ "$errors" == "" ]]
2492	then
2493	printf " --> o.k."
2494	else
2495	printf " --> failed."
2496	check_error=true
2497	printf "\n\n $errors"
2498	fi
2499
2500	# CHECKING THE PD3F FILE IF NECESSARY
2501	if [[ $check_restart == 1 && $check_error == false ]]
2502	then
2503	printf "\n\n (2) checking $filenamef"
2504
2505	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2506	found=false
2507	cat PARINF\|while read line
2508	do
2509	line=$(echo $line\|sed 's/ //g')
2510	if [[ $line == "&inipar" ]]
2511	then
2512	start_search=true
2513	fi
2514
2515	if [[ $start_search == true ]]
2516	then
2517	if [[ $line == "initializing_actions='read_restart_data'" ]]
2518	then
2519	found=true
2520	break
2521	fi
2522	fi
2523
2524	if [[ $line == "/" ]]
2525	then
2526	start_search=false
2527	fi
2528
2529	done
2530
2531	if [[ $found = false ]]
2532	then
2533	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2534	printf "\n in &inipar list in $fname$p3df_suffix."
2535	rm -rf $check_sources
2536	locat=check_namelist; exit
2537	fi
2538
2539	# READ max_user_pr FROM FILES
2540	if [[ -f parin_for_check ]]
2541	then
2542	read max_pr_user < parin_for_check
2543	else
2544	max_user_pr=0
2545	fi
2546
2547	echo "$numprocs 1 $max_pr_user" > VARIN
2548	errors=`./check_namelist_files.x < VARIN 2>&1`
2549
2550	if [[ "$errors" == "" ]]
2551	then
2552	printf " --> o.k."
2553	else
2554	printf " --> failed."
2555	check_error=true
2556	printf "\n\n $errors"
2557	fi
2558	fi
2559
2560	# REPORT ERRORS AND CONTINUE/EXIT
2561	if [[ $check_error == true ]]
2562	then
2563	printf "\n +++ errors found in the parameter file!\n"
2564	answer=dummy
2565	printf "\n\n"
2566
2567	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2568	do
2569	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2570	read answer
2571	done
2572
2573	if [[ $answer = a \|\| $answer = A ]]
2574	then
2575	printf "\n +++ Aborting..."
2576	rm -rf $check_sources
2577	locat=normal; exit
2578	fi
2579	else
2580	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2581	fi
2582	rm -rf $check_sources
2583	fi
2584	else
2585	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
2586	fi
2587
2588	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2589	rm -rf $check_sources
2590	cd $working_directory
2591
2592
2593	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2594	# CHENDE AKTIONEN DURCHGEFUEHRT
2595	if [[ $do_batch = false ]]
2596	then
2597
2598
2599	# TEMPORAEREN KATALOG ERZEUGEN
2600	mkdir -p $TEMPDIR
2601	chmod go+rx $TEMPDIR
2602	tmpcreate=true
2603
2604	# set striping on lustre file system
2605	# if [[ $localhost = lcsgih ]]
2606	# then
2607	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2608	# lfs getstripe $TEMPDIR
2609	# fi
2610
2611
2612	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2613	# TEMPORAERES VERZEICHNIS KOPIEREN
2614	if [[ $do_compile = true ]]
2615	then
2616
2617	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2618	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2619	if [[ $localhost = nech ]]
2620	then
2621	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2622	if mkdir -p $TEMPDIR_COMPILE
2623	then
2624	printf "\n *** \"$TEMPDIR_COMPILE\" "
2625	printf "\n is generated as temporary directory for cross compiling\n"
2626	else
2627	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2628	printf "\n needed for cross compilation failed"
2629	locat=compile
2630	exit
2631	fi
2632	else
2633	TEMPDIR_COMPILE=$TEMPDIR
2634	fi
2635
2636
2637	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2638	line=""
2639	grep "%depository_path" $config_file > tmp_mrun
2640	while read line
2641	do
2642	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2643	then
2644	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2645	then
2646	global_depository_path=`echo $line \| cut -d" " -s -f2`
2647	fi
2648	fi
2649	done < tmp_mrun
2650
2651	line=""
2652	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2653	while read line
2654	do
2655	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2656	then
2657	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2658	then
2659	local_depository_path=`echo $line \| cut -d" " -s -f2`
2660	fi
2661	fi
2662	done < tmp_mrun
2663
2664	if [[ "$local_depository_path" = "" ]]
2665	then
2666	if [[ "$global_depository_path" != "" ]]
2667	then
2668	local_depository_path=$global_depository_path
2669	else
2670	printf "\n\n +++ no depository path found in configuration file"
2671	printf "\n for local host \"$localhost\" "
2672	printf "\n please set \"\%depository_path\" in configuration file\n"
2673	locat=config_file; exit
2674	fi
2675	fi
2676	eval local_depository_path=$local_depository_path
2677	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2678	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2679
2680
2681	basename=`print $mainprog \| cut -f1 -d"."`
2682	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2683	if [[ ! -f $make_depository ]]
2684	then
2685	printf "\n"
2686	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2687	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2688	else
2689	cp $make_depository $TEMPDIR_COMPILE
2690	cd $TEMPDIR_COMPILE
2691	tar -xf $make_depository > /dev/null 2>&1
2692	cd - > /dev/null
2693	fi
2694
2695	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2696
2697	else
2698
2699	cp $executable ${TEMPDIR}/a.out
2700
2701	fi
2702
2703
2704	# WECHSEL IN TEMPORAEREN KATALOG
2705	cd $TEMPDIR
2706	printf "\n *** changed to temporary directory: $TEMPDIR"
2707
2708
2709	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2710	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2711	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2712	# ERMITTELN
2713	(( i = 0 ))
2714	while (( i < iout ))
2715	do
2716	(( i = i + 1 ))
2717	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2718	then
2719	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2720	else
2721	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2722	fi
2723	done
2724
2725
2726	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2727	if [[ $do_compile = true ]]
2728	then
2729
2730
2731	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2732	printf "\n\n\n *** compilation starts \n$striche\n"
2733	printf " *** compilation with make using following options:\n"
2734	printf " make depository: $make_depository"
2735	if [[ "$mopts" != "" ]]
2736	then
2737	printf " make options: $mopts\n"
2738	fi
2739	printf " compilername: $compiler_name\n"
2740	printf " compiler options: $fopts\n"
2741	printf " preprocessor directives: $cpp_options \n"
2742	printf " linker options: $lopts \n"
2743	if [[ "$modules" != "" ]]
2744	then
2745	printf " modules to be load: $modules \n"
2746	fi
2747	printf " source code files: $source_list \n"
2748
2749	if [[ $localhost = nech ]]
2750	then
2751	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2752	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2753	cp $TEMPDIR_COMPILE/a.out .
2754	[[ $? != 0 ]] && compile_error=true
2755	rm -rf $TEMPDIR_COMPILE
2756	elif [[ $localhost = ibmh ]]
2757	then
2758	printf " compiler is called via ssh on \"plogin1\" \n"
2759	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2760	[[ ! -f a.out ]] && compile_error=true
2761	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2762	elif [[ $localhost = lcsgib ]]
2763	then
2764	printf " compiler is called via ssh on \"bicegate0\" \n"
2765	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2766	[[ ! -f a.out ]] && compile_error=true
2767	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2768	elif [[ $localhost = lcsgih ]]
2769	then
2770	printf " compiler is called via ssh on \"hicegate0\" \n"
2771	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2772	[[ ! -f a.out ]] && compile_error=true
2773	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2774	elif [[ $localhost = lcflow ]]
2775	then
2776	printf " compiler is called via ssh on \"flow\" \n"
2777	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2778	[[ ! -f a.out ]] && compile_error=true
2779	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2780	else
2781	[[ "$init_cmds" != "" ]] && eval $init_cmds
2782	[[ "$module_calls" != "" ]] && eval $module_calls
2783	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2784
2785	fi
2786
2787	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2788	then
2789	printf "\n +++ error occured while compiling or linking"
2790	locat=compile
2791
2792	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2793	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2794	# then
2795	exit
2796	# else
2797	# locat=normal
2798	# fi
2799	else
2800	printf "$striche\n *** compilation finished \n"
2801	fi
2802	fi
2803
2804
2805	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2806	if [[ $local_compile = true ]]
2807	then
2808	cd $HOME
2809	rm -rf $TEMPDIR
2810	locat=local_compile; exit
2811	fi
2812
2813
2814	# BEREITSTELLEN DER INPUT-DATEIEN
2815	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2816	(( i = 0 ))
2817	while (( i < iin ))
2818	do
2819	(( i = i + 1 ))
2820	if (( i == 1 ))
2821	then
2822	printf "\n\n *** providing INPUT-files:\n$striche"
2823	fi
2824
2825
2826	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2827	if [[ "${transin[$i]}" = unavailable ]]
2828	then
2829	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2830	then
2831	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2832	printf "\n is not available!"
2833	else
2834	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2835	printf "\n is not available!"
2836	fi
2837	continue
2838	fi
2839
2840	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2841	files_for_pes=false; datentyp=file
2842	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2843	then
2844	files_for_pes=true; datentyp=directory
2845	actionin[$i]=""
2846	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2847	then
2848	actionin[$i]=""
2849	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2850	then
2851	files_for_pes=true; datentyp=directory
2852	actionin[$i]="ar"
2853	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2854	then
2855	actionin[$i]="ar"
2856	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2857	then
2858	files_for_pes=true; datentyp=directory
2859	actionin[$i]="fl"
2860	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2861	then
2862	actionin[$i]="fl"
2863	fi
2864
2865	if [[ $files_for_pes = true ]]
2866	then
2867	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2868	else
2869	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2870	fi
2871
2872	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2873	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2874	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2875	# SERVER ZU HOLEN
2876	if [[ "${actionin[$i]}" = fl ]]
2877	then
2878	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2879	if [[ $files_for_pes = false ]]
2880	then
2881	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2882	then
2883	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2884	got_tmp[$i]=true
2885	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2886	then
2887	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2888	printf "\n *** trying to use backup copy in \"$WORK\" "
2889	cp $WORK/${frelin[$i]} ${localin[$i]}
2890	else
2891	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2892	printf "\n or \"$tmp_data_catalog\" does not exist!"
2893	printf "\n *** trying to get copy from archive"
2894	actionin[$i]=ar
2895	fi
2896	else
2897	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2898	then
2899	mkdir ${localin[$i]}
2900	cd $tmp_data_catalog/${frelin[$i]}
2901	for file in $(ls *)
2902	do
2903	ln $file $TEMPDIR/${localin[$i]}
2904	done
2905	cd $TEMPDIR
2906	got_tmp[$i]=true
2907	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2908	then
2909	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2910	printf "\n *** trying to use backup copy in \"$WORK\" "
2911	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2912	else
2913	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2914	printf "\n or \"$tmp_data_catalog\" does not exist!"
2915	printf "\n *** trying to get copy from archive"
2916	actionin[$i]=ar
2917	fi
2918	fi
2919	fi
2920
2921
2922	# DATEI LIEGT AUF ARCHIV-SERVER
2923	if [[ "${actionin[$i]}" = ar ]]
2924	then
2925
2926	if [[ $files_for_pes = false ]]
2927	then
2928	printf "\n file will be restored from archive-system ($archive_system)!"
2929	else
2930	printf "\n directory will be restored from archive-system ($archive_system)!"
2931	fi
2932
2933	file_restored=false
2934
2935	if [[ $archive_system = asterix ]]
2936	then
2937	do_stagein=true
2938	(( stagein_anz = 0 ))
2939	while [[ $do_stagein = true ]]
2940	do
2941	if [[ $files_for_pes = false ]]
2942	then
2943	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2944	else
2945	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2946	fi
2947	cat STAGEIN_OUTPUT
2948	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2949	then
2950	file_restored=true
2951	do_stagein=false
2952	else
2953	(( stagein_anz = stagein_anz + 1 ))
2954	if (( stagein_anz == 10 ))
2955	then
2956	printf "\n +++ stagein stoped after 10 tries"
2957	locat=stage
2958	exit
2959	fi
2960	printf "\n +++ restoring from archive failed, trying again:"
2961	sleep 900
2962	fi
2963	done
2964	elif [[ $archive_system = DMF ]]
2965	then
2966	if [[ $files_for_pes = false ]]
2967	then
2968	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2969	locat=DMF
2970	exit
2971	else
2972	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2973	cp -r $ARCHIVE/${frelin[$i]} $PWD
2974	file_restored=true
2975	fi
2976	elif [[ $archive_system = tivoli ]]
2977	then
2978	if [[ $files_for_pes = false ]]
2979	then
2980	if [[ $localhost = lcsgih ]]
2981	then
2982	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2983	else
2984	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2985	fi
2986	else
2987	(( inode = 0 ))
2988	while (( inode < nodes ))
2989	do
2990	if [[ $localhost = lcsgih ]]
2991	then
2992	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2993	else
2994	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2995	fi
2996	(( inode = inode + 1 ))
2997	done
2998	fi
2999	file_restored=true
3000	elif [[ $archive_system = ut ]]
3001	then
3002	if [[ $files_for_pes = false ]]
3003	then
3004	cp $UT/${frelin[$i]} .
3005	else
3006	(( inode = 0 ))
3007	while (( inode < nodes ))
3008	do
3009	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3010	(( inode = inode + 1 ))
3011	done
3012	fi
3013	file_restored=true
3014	else
3015	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3016	locat=rearchive
3017	exit
3018	fi
3019
3020	if [[ $file_restored = true ]]
3021	then
3022
3023	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3024	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3025	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3026	if [[ $files_for_pes = false ]]
3027	then
3028	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3029	else
3030	mkdir $tmp_data_catalog/${frelin[$i]}
3031	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3032	fi
3033	got_tmp[$i]=true
3034
3035	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3036	mv ${frelin[$i]} ${localin[$i]}
3037
3038	fi
3039	fi
3040
3041
3042	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3043	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3044	then
3045
3046	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3047	then
3048
3049	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3050	printf "\n file will be provided for $numprocs processors"
3051	mkdir ${localin[$i]}
3052	ival=$numprocs
3053	(( ii = 0 ))
3054	while (( ii <= ival-1 ))
3055	do
3056	if (( ii < 10 ))
3057	then
3058	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3059	elif (( ii < 100 ))
3060	then
3061	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3062	elif (( ii < 1000 ))
3063	then
3064	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3065	else
3066	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3067	fi
3068	(( ii = ii + 1 ))
3069	done
3070
3071	else
3072
3073	if [[ $files_for_pes = true ]]
3074	then
3075
3076	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3077	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3078	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3079	# PER MOVE UMBENANNT WERDEN
3080	printf "\n providing $numprocs files for the respective processors"
3081	mkdir ${localin[$i]}
3082	if [[ $link_local_input = true ]]
3083	then
3084	printf " using ln -f\n"
3085	cd ${absnamein[$i]}
3086	for file in $(ls *)
3087	do
3088	ln -f $file ${localin[$i]}
3089	done
3090	cd $TEMPDIR
3091	fi
3092	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3093	if [[ ! -f "${localin[$i]}/_0000" ]]
3094	then
3095	if [[ $link_local_input = true ]]
3096	then
3097	printf " ln failed for .../_0000, using cp...\n"
3098	fi
3099	cp -r ${absnamein[$i]}/* ${localin[$i]}
3100	fi
3101
3102	else
3103	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3104	if [[ $link_local_input = true ]]
3105	then
3106	printf " using ln -f\n"
3107	ln -f ${absnamein[$i]} ${localin[$i]}
3108	fi
3109	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3110	if [[ ! -f "${localin[$i]}" ]]
3111	then
3112	if [[ $link_local_input = true ]]
3113	then
3114	printf " ln failed, using cp...\n"
3115	fi
3116	cp ${absnamein[$i]} ${localin[$i]}
3117	fi
3118	fi
3119	fi
3120	fi
3121
3122	done
3123	if (( i != 0 ))
3124	then
3125	printf "\n$striche\n *** all INPUT-files provided \n"
3126	fi
3127
3128
3129	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3130	(( i = 0 ))
3131	while (( i < iic ))
3132	do
3133	(( i = i + 1 ))
3134	if (( i == 1 ))
3135	then
3136	printf "\n\n *** execution of INPUT-commands:\n$striche"
3137	fi
3138	printf "\n >>> ${in_command[$i]}"
3139	eval ${in_command[$i]}
3140	if (( i == iic ))
3141	then
3142	printf "\n$striche\n"
3143	fi
3144	done
3145
3146
3147	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3148	cpurest=${cpumax}.
3149
3150
3151	# START DVR STREAMING SERVER
3152	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3153	then
3154	if [[ "$dvr_server" != "" ]]
3155	then
3156
3157	printf "\n\n *** preparing the dvr streaming server configuration file"
3158
3159	# Check, if a dvr server is already running
3160	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3161	if [[ "$running_dvrserver_id" != "" ]]
3162	then
3163
3164	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3165	printf "\n This server is used instead starting a new one!"
3166	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3167
3168	else
3169
3170	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3171	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3172	then
3173	cp ${PALM_BIN}/.dvrserver.config .
3174
3175	# Entering the BASEDIR, UID and GID into this file
3176	user_id=`id -u`
3177	group_id=`id -g`
3178	# & is needed as seperator, because TEMPDIR contains /
3179	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3180	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3181	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3182	mv .dvrserver.3 .dvrserver.config
3183	rm .dvrserver.1 .dvrserver.2
3184
3185	# Start dvr server in background, get his id and print on terminal
3186	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3187	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3188	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3189	local_dvrserver_running=.TRUE.
3190	else
3191	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3192	printf "\n \"$PALM_BIN\" "
3193	locat=dvr
3194	exit
3195	fi
3196
3197	fi
3198
3199	else
3200	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3201	fi
3202	fi
3203
3204
3205	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3206	# LESEN VON PALM)
3207	cat > ENVPAR << %%END%%
3208	&envpar run_identifier = '$fname', host = '$localhost',
3209	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3210	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3211	maximum_cpu_time_allowed = ${cpumax}.,
3212	revision = '$global_revision',
3213	local_dvrserver_running = $local_dvrserver_running /
3214
3215	%%END%%
3216
3217
3218	# PROGRAMMSTART
3219	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3220	PATH=$PATH:$TEMPDIR
3221
3222	# MPI debug option (argument checking, slows down execution due to increased latency)
3223	if [[ "$mpi_debug" = true ]]
3224	then
3225	export MPI_CHECK_ARGS=1
3226	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3227	fi
3228
3229	if [[ "$totalview" = true ]]
3230	then
3231	printf "\n *** totalview debugger will be used"
3232	tv_opt="-tv"
3233	else
3234	tv_opt=""
3235	fi
3236
3237	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3238	then
3239	if [[ "$ENVIRONMENT" = BATCH ]]
3240	then
3241	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3242	then
3243	printf "\n +++ debug is allowed in interactive mode only"
3244	locat=debug
3245	exit
3246	fi
3247	fi
3248	if [[ $localhost = decalpha ]]
3249	then
3250	dxladebug a.out
3251	elif [[ $localhost = ibmh ]]
3252	then
3253
3254	# SETUP THE IBM MPI ENVIRONMENT
3255	export MP_SHARED_MEMORY=yes
3256	export AIXTHREADS_SCOPE=S
3257	export OMP_NUM_THREADS=$threads_per_task
3258	export AUTHSTATE=files
3259	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3260
3261	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3262	export MP_ADAPTER_USE=shared
3263	export MP_CPU_USE=multiple
3264	export MP_TIMEOUT=1200
3265
3266	unset MP_TASK_AFFINITY
3267
3268	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3269	#(( ii = 1 ))
3270	#while (( ii <= $numprocs ))
3271	#do
3272	# echo $localhost_realname >> hostfile
3273	# (( ii = ii + 1 ))
3274	#done
3275	#export MP_HOSTFILE=hostfile
3276
3277	if [[ "$LOADLBATCH" = yes ]]
3278	then
3279	totalview poe a.out $ROPTS
3280	else
3281	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3282	export TVDSVRLAUNCHCMD=ssh
3283	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3284	fi
3285	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3286	then
3287	# CURRENTLY NO DEBUGGER ON LCSGI
3288	if [[ $run_coupled_model = true ]]
3289	then
3290	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3291	locat=debug
3292	exit
3293	else
3294	echo "no_coupling" > runfile_atmos
3295	fi
3296	(( ii = $numprocs / $threads_per_task ))
3297	export OMP_NUM_THREADS=$threads_per_task
3298	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3299	if [[ $threads_per_task != 1 ]]
3300	then
3301	printf "\n threads per task: $threads_per_task"
3302	fi
3303	printf "\n\n"
3304	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3305	then
3306	# export MPI_LAUNCH_TIMEOUT=360
3307	if [[ "$totalview" = true ]]
3308	then
3309	printf "\n running totalview debugger"
3310	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3311	else
3312	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3313	fi
3314	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3315	then
3316	# ulimit -s 300000 # A too large stack size causes problems
3317	# export MV2_NUM_PORTS=2
3318	# export MV2_CPU_MAPPING=0:1:2:3
3319	if [[ "$totalview" = true ]]
3320	then
3321	printf "\n running totalview debugger"
3322	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3323	else
3324	mpiexec ./a.out $ROPTS < runfile_atmos
3325	fi
3326	fi
3327	else
3328	printf "\n +++ no debug available on \"$localhost\" "
3329	printf "\n or not implemented in mrun so far"
3330	locat=debug
3331	exit
3332	fi
3333
3334	# end debug mode
3335	else
3336
3337	# normal execution
3338	if [[ -n $numprocs ]]
3339	then
3340	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3341	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3342	then
3343	# SETUP THE IBM MPI ENVIRONMENT
3344	if [[ $host != ibmh && $host != ibmkisti ]]
3345	then
3346	export MP_SHARED_MEMORY=yes
3347	export AIXTHREAD_SCOPE=S
3348	export OMP_NUM_THREADS=$threads_per_task
3349	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3350	export AUTHSTATE=files
3351	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3352	# export MP_PRINTENV=yes
3353
3354	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3355	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3356	export MP_WAIT_MODE=poll
3357	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3358	fi
3359
3360	if [[ $host = ibmkisti ]]
3361	then
3362	export LANG=en_US
3363	export MP_SHARED_MEMORY=yes
3364	if [[ $threads_per_task = 1 ]]
3365	then
3366	export MP_SINGLE_THREAD=yes
3367	export MEMORY_AFFINITY=MCM
3368	else
3369	export OMP_NUM_THREADS=$threads_per_task
3370	fi
3371	fi
3372
3373	if [[ "$LOADLBATCH" = yes ]]
3374	then
3375	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3376	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3377	then
3378	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3379	else
3380	if [[ $run_coupled_model = false ]]
3381	then
3382	if [[ "$ocean_file_appendix" = true ]]
3383	then
3384	echo "precursor_ocean" > runfile_atmos
3385	else
3386	echo "precursor_atmos" > runfile_atmos
3387	fi
3388	else
3389	(( iia = $numprocs_atmos / $threads_per_task ))
3390	(( iio = $numprocs_ocean / $threads_per_task ))
3391	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3392	printf "\n using $coupled_mode coupling"
3393	printf "\n\n"
3394	echo "coupled_run $iia $iio" > runfile_atmos
3395	fi
3396	poe ./a.out $ROPTS < runfile_atmos
3397	fi
3398	else
3399	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3400	then
3401	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3402	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3403	then
3404	if [[ -f $hostfile ]]
3405	then
3406	cp $hostfile hostfile
3407	else
3408	(( ii = 1 ))
3409	while (( ii <= $numprocs ))
3410	do
3411	echo $localhost_realname >> hostfile
3412	(( ii = ii + 1 ))
3413	done
3414	fi
3415	export MP_HOSTFILE=hostfile
3416	if [[ $run_coupled_model = false ]]
3417	then
3418	if [[ "$ocean_file_appendix" = true ]]
3419	then
3420	echo "precursor_ocean" > runfile_atmos
3421	else
3422	echo "precursor_atmos" > runfile_atmos
3423	fi
3424	else
3425	(( iia = $numprocs_atmos / $threads_per_task ))
3426	(( iio = $numprocs_ocean / $threads_per_task ))
3427	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3428	printf "\n using $coupled_mode coupling"
3429	printf "\n\n"
3430	echo "coupled_run $iia $iio" > runfile_atmos
3431	fi
3432	if [[ $localhost = ibmy ]]
3433	then
3434	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3435	else
3436	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3437	fi
3438
3439	else
3440	if [[ "$host_file" = "" ]]
3441	then
3442	printf "\n +++ no hostfile given in configuration file"
3443	locat=config_file
3444	exit
3445	else
3446	eval host_file=$host_file
3447	fi
3448	export MP_HOSTFILE=$host_file
3449	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3450	fi
3451	fi
3452	elif [[ $host = nech \|\| $host = necriam ]]
3453	then
3454	(( ii = nodes ))
3455	if [[ $ii = 1 ]]
3456	then
3457	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3458	export MPIPROGINF=YES
3459	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3460	echo "*** execution on single node with mpirun"
3461	mpirun -np $numprocs ./a.out $ROPTS
3462	else
3463	(( i = 0 ))
3464	while (( i < ii ))
3465	do
3466	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3467	(( i = i + 1 ))
3468	done
3469
3470	echo "#!/bin/sh" > mpi_exec_shell
3471	echo " " >> mpi_exec_shell
3472	echo "set -u" >> mpi_exec_shell
3473	echo "F_ERRCNT=0" >> mpi_exec_shell
3474	echo "MPIPROGINV=YES" >> mpi_exec_shell
3475	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3476	echo "cpurest=$cpurest" >> mpi_exec_shell
3477	echo "fname=$fname" >> mpi_exec_shell
3478	echo "localhost=$localhost" >> mpi_exec_shell
3479	echo "return_addres=$return_addres" >> mpi_exec_shell
3480	echo "return_username=$return_username" >> mpi_exec_shell
3481	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3482	echo "write_binary=$write_binary" >> mpi_exec_shell
3483	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3484	echo " " >> mpi_exec_shell
3485	echo "export F_ERRCNT" >> mpi_exec_shell
3486	echo "export MPIPROGINV" >> mpi_exec_shell
3487	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3488	echo "export cpurest" >> mpi_exec_shell
3489	echo "export fname" >> mpi_exec_shell
3490	echo "export localhost" >> mpi_exec_shell
3491	echo "export return_addres" >> mpi_exec_shell
3492	echo "export return_username" >> mpi_exec_shell
3493	echo "export tasks_per_node" >> mpi_exec_shell
3494	echo "export write_binary" >> mpi_exec_shell
3495	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3496	echo " " >> mpi_exec_shell
3497	echo "exec ./a.out" >> mpi_exec_shell
3498
3499	chmod u+x mpi_exec_shell
3500	export MPIPROGINF=YES
3501	mpirun -f multinode_config &
3502	wait
3503
3504	fi
3505	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3506	then
3507
3508	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3509	# DOES NOT EXIST
3510	if [[ $host != lcsgih && $host != lcsgib ]]
3511	then
3512	if [[ -f $hostfile ]]
3513	then
3514	cp $hostfile hostfile
3515	(( ii = $numprocs / $threads_per_task ))
3516	else
3517	(( ii = 1 ))
3518	while (( ii <= $numprocs / $threads_per_task ))
3519	do
3520	echo $localhost_realname >> hostfile
3521	(( ii = ii + 1 ))
3522	done
3523	fi
3524	eval zeile=\"`head -n $ii hostfile`\"
3525	printf "\n *** running on: $zeile"
3526	fi
3527
3528	(( ii = $numprocs / $threads_per_task ))
3529	export OMP_NUM_THREADS=$threads_per_task
3530	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3531	if [[ $threads_per_task != 1 ]]
3532	then
3533	# increase stack size to unlimited, because large runs
3534	# may abort otherwise
3535	ulimit -Ss unlimited
3536	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3537	fi
3538	if [[ $run_coupled_model = false ]]
3539	then
3540	if [[ "$ocean_file_appendix" = true ]]
3541	then
3542	echo "precursor_ocean" > runfile_atmos
3543	else
3544	echo "precursor_atmos" > runfile_atmos
3545	fi
3546	printf "\n\n"
3547	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3548	then
3549	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3550	then
3551	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3552	# export MPI_DSM_DISTRIBUTE=1
3553	# MPI_DSM_CPULIST: pin MPI processes to cores
3554	if [[ $use_openmp = false ]]
3555	then
3556	if [[ "$sgi_feature" = ice2 ]]
3557	then
3558	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3559	else
3560	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3561	fi
3562	else
3563	unset MPI_DSM_CPULIST
3564	fi
3565	# MPI_IB_RAILS: use both IB rails on ICE2
3566	export MPI_BUFS_PER_HOST=512
3567	export MPI_IB_RAILS=2
3568	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3569	export MPI_CONNECTIONS_THRESHOLD=8192
3570	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3571	export MPI_TYPE_DEPTH=20
3572	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3573	export MPI_GROUP_MAX=64
3574	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3575	if [[ $use_openmp = true ]]
3576	then
3577	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3578	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3579	else
3580	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3581	fi
3582
3583	# next is test for openmp usage
3584	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3585	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3586	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3587	then
3588	export MV2_NUM_PORTS=2
3589	# The default setting of MV2_CPU_MAPPING gives best results
3590	# export MV2_ENABLE_AFFINITY=1
3591	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3592	# if [[ "$sgi_feature" = ice2 ]]
3593	# then
3594	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3595	# else
3596	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3597	# fi
3598	if [[ $use_openmp = true ]]
3599	then
3600	unset MV2_CPU_MAPPING
3601	export MV2_ENABLE_AFFINITY=0
3602	fi
3603	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3604	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3605	if [[ $use_openmp = true ]]
3606	then
3607	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3608	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3609	else
3610	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3611	fi
3612	elif [[ "$mpilib" = impi ]]
3613	then
3614	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3615	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3616	fi
3617	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3618	then
3619	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3620	elif [[ $host = lcflow ]]
3621	then
3622	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3623	elif [[ $host = lcsb ]]
3624	then
3625	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3626	elif [[ $host = lckiaps ]]
3627	then
3628	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3629	elif [[ $host = lckyu* ]]
3630	then
3631	mpiexec -n $ii a.out < runfile_atmos $ROPTS
3632	else
3633	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3634	fi
3635	else
3636
3637	# currently there is no full MPI-2 support on ICE and XT4
3638	(( iia = $numprocs_atmos / $threads_per_task ))
3639	(( iio = $numprocs_ocean / $threads_per_task ))
3640	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3641	printf "\n using $coupled_mode coupling"
3642	printf "\n\n"
3643
3644	if [[ $coupled_mode = "mpi2" ]]
3645	then
3646	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3647	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3648	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3649	then
3650
3651	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3652	then
3653	# export MPI_LAUNCH_TIMEOUT=360
3654	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3655	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3656	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3657	then
3658	# ulimit -s 300000 # A too large stack size causes problems
3659	# export MV2_NUM_PORTS=2
3660	# export MV2_CPU_MAPPING=0:1:2:3
3661	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3662	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3663	fi
3664
3665	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3666	then
3667
3668	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3669	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3670
3671	else
3672	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3673	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3674	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3675	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3676	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3677	fi
3678	wait
3679
3680	else
3681
3682	echo "coupled_run $iia $iio" > runfile_atmos
3683	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3684	then
3685
3686	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3687	then
3688	# export MPI_LAUNCH_TIMEOUT=360
3689	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3690	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3691	then
3692	# ulimit -s 300000 # A too large stack size causes problems
3693	# export MV2_NUM_PORTS=2
3694	# export MV2_CPU_MAPPING=0:1:2:3
3695	mpiexec ./a.out $ROPTS < runfile_atmos
3696	fi
3697
3698	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3699	then
3700
3701	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3702
3703	elif [[ $host = lck \|\| $host = lckordi ]]
3704	then
3705	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3706	fi
3707	wait
3708	fi
3709
3710	fi
3711	elif [[ $host = decalpha ]]
3712	then
3713	dmpirun -np $numprocs a.out $ROPTS
3714	elif [[ $host = lckyoto ]]
3715	then
3716	set -xv
3717	export P4_RSHCOMMAND=plesh
3718	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3719	if [[ "$ENVIRONMENT" = BATCH ]]
3720	then
3721	if [[ "$cond2" = fujitsu ]]
3722	then
3723	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3724	elif [[ "cond2" = pgi ]]
3725	then
3726	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3727	else
3728	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3729	fi
3730	else
3731	if [[ "$cond2" = "" ]]
3732	then
3733	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3734	else
3735	mpirun -np $numprocs ./a.out $ROPTS
3736	fi
3737	fi
3738	set +xv
3739	elif [[ $host = lctit ]]
3740	then
3741	export OMP_NUM_THREADS=$threads_per_task
3742	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3743	if [[ "$threads_per_task" != 1 ]]
3744	then
3745	export MV2_ENABLE_AFFINITY=0
3746	fi
3747	echo "----- PBS_NODEFILE content:"
3748	cat $PBS_NODEFILE
3749	echo "-----"
3750	(( ii = $numprocs / $threads_per_task ))
3751	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3752	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3753	else
3754	mpprun -n $numprocs a.out $ROPTS
3755	fi
3756	[[ $? != 0 ]] && execution_error=true
3757
3758
3759	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3760	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3761	then
3762	apprentice
3763	fi
3764	else
3765	a.out $ROPTS
3766	fi
3767	fi
3768	if [[ $? != 0 \|\| $execution_error = true ]]
3769	then
3770
3771	# ABBRUCH BEI LAUFZEITFEHLER
3772	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3773	printf "\n +++ runtime error occured"
3774	locat=execution
3775	exit
3776	else
3777	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3778	printf "\n$striche\n *** execution finished \n"
3779
3780	# Stop the dvr streaming server and process the dvr output in order
3781	# to create dvrs- and html-files containing all streams
3782	if [[ "$dvrserver_id" != "" ]]
3783	then
3784	kill $dvrserver_id
3785	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3786
3787	# If there is a directory, data have been output by the
3788	# streaming server. Otherwise, user has chosen dvrp_output=local
3789	if [[ -d DATA_DVR ]]
3790	then
3791
3792	# Add the current dvr configuration file to the dvr output
3793	# directory
3794	cp .dvrserver.config DATA_DVR
3795
3796	# Process the dvr output (option -s for also generating
3797	# sequence mode data)
3798	process_dvr_output -d DATA_DVR -f $fname -s
3799
3800	else
3801
3802	# Process the local output
3803	process_dvr_output -l -d DATA_DVR -f $fname
3804
3805	fi
3806
3807	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3808	then
3809
3810	# Process dvr output generated in local mode (dvrp_output=local)
3811	process_dvr_output -l -d DATA_DVR -f $fname
3812
3813	fi
3814	fi
3815
3816
3817
3818	# Call of combine_plot_fields in order to merge single files written
3819	# by each PE into one file.
3820	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3821	then
3822	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3823	printf "\n 2d- and/or 3d-data may be incomplete!"
3824	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3825	elif [[ "$combine_plot_fields" == true ]]
3826	then
3827	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3828	combine_plot_fields${block}.x
3829	else
3830	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3831	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3832	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3833	fi
3834
3835
3836
3837	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3838	(( i = 0 ))
3839	while (( i < ioc ))
3840	do
3841	(( i = i + 1 ))
3842	if (( i == 1 ))
3843	then
3844	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3845	fi
3846	printf "\n >>> ${out_command[$i]}"
3847	eval ${out_command[$i]}
3848	if (( i == ioc ))
3849	then
3850	printf "\n$striche\n"
3851	fi
3852	done
3853
3854
3855	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3856	if [[ $do_trace = true ]]
3857	then
3858	printf "\n\n"
3859	ls -al
3860	fi
3861
3862
3863
3864	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3865	(( i = 0 ))
3866	while (( i < iout ))
3867	do
3868	(( i = i + 1 ))
3869	if (( i == 1 ))
3870	then
3871	printf "\n\n *** saving OUTPUT-files:\n$striche"
3872	fi
3873
3874	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3875	files_for_pes=false; filetyp=file
3876	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3877	then
3878	files_for_pes=true; filetyp=directory
3879	actionout[$i]=""
3880	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3881	then
3882	actionout[$i]=""
3883	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3884	then
3885	files_for_pes=true; filetyp=directory
3886	actionout[$i]="ar"
3887	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3888	then
3889	actionout[$i]="ar"
3890	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3891	then
3892	files_for_pes=true; filetyp=directory
3893	actionout[$i]="fl"
3894	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3895	then
3896	actionout[$i]="fl"
3897	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3898	then
3899	files_for_pes=true; filetyp=directory
3900	actionout[$i]="tr"
3901	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3902	then
3903	actionout[$i]="tr"
3904	fi
3905
3906	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3907	then
3908	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3909	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3910	then
3911	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3912	else
3913
3914
3915	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3916	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3917	# REMOTE-RECHNUNGEN
3918	if [[ "${actionout[$i]}" = tr ]]
3919	then
3920	if [[ $localhost != $fromhost ]]
3921	then
3922	if [[ $files_for_pes = false ]]
3923	then
3924	cps=""
3925	cst=""
3926	else
3927	cps=-c
3928	cst="/"
3929	fi
3930	if [[ $localhost = nech ]]
3931	then
3932
3933	# TRANSFER IN EIGENSTAENDIGEM JOB
3934	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3935	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3936	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3937	if [[ $files_for_pes = false ]]
3938	then
3939	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3940	else
3941	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3942	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3943	fi
3944
3945	echo "set -x" > transfer_${localout[$i]}
3946	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3947
3948	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3949	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3950	printf "\n or higher cycle\n"
3951	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3952
3953	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3954
3955	if [[ $localhost = nech ]]
3956	then
3957	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
3958	else
3959	if [[ "$LOGNAME" = b323013 ]]
3960	then
3961	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3962	else
3963	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3964	fi
3965	fi
3966
3967	else
3968
3969	# TRANSFER INNERHALB DIESES JOBS
3970	transfer_failed=false
3971	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3972	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3973	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3974	[[ $? != 0 ]] && transfer_failed=true
3975
3976	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3977	# LOKALER MASCHINE ANLEGEN
3978	if [[ $transfer_failed = true ]]
3979	then
3980	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3981	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3982
3983	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3984	# ANLEGEN.
3985	eval local_catalog=${pathout[$i]}
3986	if [[ ! -d $local_catalog ]]
3987	then
3988	printf " *** local directory does not exist. Trying to create:\n"
3989	printf " $local_catalog \n"
3990	mkdir -p $local_catalog
3991	fi
3992	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3993	transfer_problems=true
3994	fi
3995	fi
3996	else
3997
3998	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3999	actionout[$i]=""
4000	fi
4001	fi
4002
4003
4004	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4005	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4006	# REMOTE-RECHNUNGEN
4007	if [[ "${actionout[$i]}" = tra ]]
4008	then
4009	if [[ $localhost != $fromhost ]]
4010	then
4011	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4012	then
4013
4014	# TRANSFER IN EIGENSTAENDIGEM JOB
4015	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4016	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4017	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4018	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4019
4020	echo "set -x" > transfer_${localout[$i]}
4021	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4022
4023	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4024	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4025	printf "\n or higher cycle\n"
4026	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4027
4028	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4029
4030	if [[ $localhost = nech ]]
4031	then
4032	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4033	else
4034	if [[ $LOGNAME = b323013 ]]
4035	then
4036	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4037	else
4038	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4039	fi
4040	fi
4041
4042	else
4043
4044	# TRANSFER INNERHALB DIESES JOBS
4045	transfer_failed=false
4046	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4047	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4048	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4049	[[ $? != 0 ]] && transfer_failed=true
4050
4051	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4052	# LOKALER MASCHINE ANLEGEN
4053	if [[ $transfer_failed = true ]]
4054	then
4055	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4056	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4057
4058	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4059	# ANLEGEN
4060	eval local_catalog=${pathout[$i]}
4061	if [[ ! -d $local_catalog ]]
4062	then
4063	printf " *** local directory does not exist. Trying to create:\n"
4064	printf " $local_catalog \n"
4065	mkdir -p $local_catalog
4066	fi
4067
4068	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4069	transfer_problems=true
4070	fi
4071	fi
4072	else
4073
4074	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4075	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4076	actionout[$i]=a
4077	fi
4078	fi
4079
4080
4081	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4082	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4083	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4084	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4085	if [[ "${actionout[$i]}" = fl ]]
4086	then
4087	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4088	chmod g+rx $tmp_data_catalog
4089	if [[ $files_for_pes = false ]]
4090	then
4091	printf "\n >>> OUTPUT: ${localout[$i]} to"
4092	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4093	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4094	else
4095	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4096	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4097	mkdir $tmp_data_catalog/${frelout[$i]}
4098	cd ${localout[$i]}
4099	for file in $(ls *)
4100	do
4101	ln -f $file $tmp_data_catalog/${frelout[$i]}
4102	done
4103	cd $TEMPDIR
4104	fi
4105
4106
4107	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4108	if [[ $store_on_archive_system = true ]]
4109	then
4110
4111	if [[ $archive_system = asterix ]]
4112	then
4113	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4114	if [[ $files_for_pes = false ]]
4115	then
4116	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4117	else
4118	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4119	fi
4120	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4121	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4122	echo "then" >> archive_${frelout[$i]}
4123	echo " do_stageout=false" >> archive_${frelout[$i]}
4124	echo "else" >> archive_${frelout[$i]}
4125	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4126	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4127	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4128	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4129	if [[ $files_for_pes = false ]]
4130	then
4131	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4132	else
4133	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4134	fi
4135	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4136	echo "fi" >> archive_${frelout[$i]}
4137	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4138	elif [[ $archive_system = DMF ]]
4139	then
4140	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4141	if [[ $files_for_pes = false ]]
4142	then
4143	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4144	locat=DMF
4145	exit
4146	else
4147	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4148	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4149	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4150	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4151	fi
4152	elif [[ $archive_system = tivoli ]]
4153	then
4154	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4155	if [[ $files_for_pes = false ]]
4156	then
4157	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4158	echo "set -x" >> archive_${frelout[$i]}
4159	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4160	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4161	else
4162
4163	echo "set -x" >> archive_${frelout[$i]}
4164	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4165	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4166	cd $tmp_data_catalog
4167	all_files=`ls -1 ${frelout[$i]}/*`
4168	cd - > /dev/null
4169	(( inode = 0 ))
4170	(( tp1 = tasks_per_node + 1 ))
4171	while (( inode < nodes ))
4172	do
4173	# echo "*** all_files = \"$all_files\" "
4174	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4175	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4176	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4177	# echo "*** files = \"$files\" "
4178	# echo "*** all_files = \"$all_files\" "
4179	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4180	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4181	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4182	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4183	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4184	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4185	(( inode = inode + 1 ))
4186	done
4187	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4188	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4189	fi
4190	elif [[ $archive_system = ut ]]
4191	then
4192	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4193	if [[ $files_for_pes = false ]]
4194	then
4195	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4196	echo "set -x" >> archive_${frelout[$i]}
4197	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4198	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4199	else
4200
4201	echo "set -x" >> archive_${frelout[$i]}
4202	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4203	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4204	cd $tmp_data_catalog
4205	all_files=`ls -1 ${frelout[$i]}/*`
4206	cd - > /dev/null
4207	(( inode = 0 ))
4208	(( tp1 = tasks_per_node + 1 ))
4209	while (( inode < nodes ))
4210	do
4211	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4212	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4213	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4214	(( inode = inode + 1 ))
4215	done
4216	fi
4217	elif [[ $archive_system = none ]]
4218	then
4219	printf " +++ archiving on $localhost not available!\n"
4220	fi
4221
4222	if [[ $archive_system != none ]]
4223	then
4224	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4225	then
4226	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4227	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4228	elif [[ $localhost = nech ]]
4229	then
4230	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4231	fi
4232	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4233	fi
4234	else
4235	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4236	fi
4237
4238
4239	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4240	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4241	if [[ $files_for_pes = false ]]
4242	then
4243	cat /dev/null > ${pathout[$i]}
4244	else
4245	mkdir -p ${pathout[$i]}
4246	fi
4247
4248	fi
4249
4250
4251	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4252	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4253	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4254	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4255	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4256	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4257	if [[ "${actionout[$i]}" = ar ]]
4258	then
4259	if [[ $files_for_pes = false ]]
4260	then
4261	printf "\n >>> OUTPUT: ${localout[$i]} to"
4262	printf "\n ${pathout[$i]}"
4263	printf "\n File will be copied to archive-system ($archive_system) !\n"
4264	else
4265	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4266	printf "\n ${pathout[$i]}"
4267	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4268	fi
4269	mv ${localout[$i]} ${frelout[$i]}
4270
4271	file_saved=false
4272
4273	if [[ $archive_system = asterix ]]
4274	then
4275	do_stageout=true
4276	(( stageout_anz = 0 ))
4277	while [[ $do_stageout = true ]]
4278	do
4279	if [[ $files_for_pes = false ]]
4280	then
4281	stageout ${frelout[$i]} > STAGE_OUTPUT
4282	else
4283	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4284	fi
4285	cat STAGE_OUTPUT
4286	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4287	then
4288	file_saved=true
4289	do_stageout=false
4290	else
4291	if [[ $files_for_pes = false ]]
4292	then
4293	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4294	else
4295	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4296	fi
4297	(( stageout_anz = stageout_anz + 1 ))
4298	if (( stageout_anz == 10 ))
4299	then
4300	printf "\n +++ stoped after 10 unsuccessful tries!"
4301	archive_save=false
4302	do_stageout=false
4303	else
4304	printf "\n *** new try to store on archive after 15 min:"
4305	sleep 900
4306	fi
4307	fi
4308	done
4309	elif [[ $archive_system = DMF ]]
4310	then
4311	if [[ $files_for_pes = false ]]
4312	then
4313	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4314	locat=DMF
4315	exit
4316	else
4317	rm -rf $ARCHIVE/${frelout[$i]}
4318	cp -r ${frelout[$i]} $ARCHIVE
4319	fi
4320	file_saved=true
4321	elif [[ $archive_system = tivoli ]]
4322	then
4323	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4324	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4325	# GELEGT WERDEN
4326	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4327	chmod g+rx $tmp_data_catalog
4328	if [[ $files_for_pes = false ]]
4329	then
4330	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4331	else
4332	mkdir $tmp_data_catalog/${frelout[$i]}
4333	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4334	fi
4335
4336	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4337	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4338	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4339	if [[ $files_for_pes = false ]]
4340	then
4341	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4342	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4343	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4344	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4345	else
4346	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4347	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4348	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4349	fi
4350
4351	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4352	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4353	file_saved=true
4354
4355	elif [[ $archive_system = ut ]]
4356	then
4357	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4358	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4359	# GELEGT WERDEN
4360	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4361	chmod g+rx $tmp_data_catalog
4362	if [[ $files_for_pes = false ]]
4363	then
4364	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4365	else
4366	mkdir $tmp_data_catalog/${frelout[$i]}
4367	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4368	fi
4369
4370	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4371	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4372	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4373	if [[ $files_for_pes = false ]]
4374	then
4375	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4376	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4377	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4378	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4379	else
4380	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4381	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4382	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4383	fi
4384
4385	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4386	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4387	file_saved=true
4388
4389	else
4390	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4391	archive_save=false
4392	fi
4393	if [[ $file_saved = true ]]
4394	then
4395	if [[ $files_for_pes = false ]]
4396	then
4397	cat /dev/null > ${pathout[$i]}
4398	else
4399	mkdir -p ${pathout[$i]}
4400	fi
4401	fi
4402	fi
4403
4404	# APPEND AUF LOKALER MASCHINE
4405	if [[ "${actionout[$i]}" = "a" ]]
4406	then
4407	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4408	then
4409	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4410	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4411	else
4412	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4413	cat ${localout[$i]} >> ${pathout[$i]}
4414	fi
4415	fi
4416
4417	# KOPIEREN AUF LOKALER MASCHINE
4418	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4419	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4420	then
4421
4422	# KOPIEREN AUF EINPROZESSORMASCHINE
4423	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4424	then
4425	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4426	if [[ $link_local_output = true ]]
4427	then
4428	printf " using ln -f\n"
4429	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4430	fi
4431	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4432	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4433	then
4434	if [[ $link_local_output = true ]]
4435	then
4436	printf " ln failed, using cp...\n"
4437	fi
4438	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4439	fi
4440	else
4441	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4442	if [[ $link_local_output = true ]]
4443	then
4444	printf " using ln -f\n"
4445	ln -f ${localout[$i]} ${pathout[$i]}
4446	fi
4447	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4448	if [[ ! -f "${pathout[$i]}" ]]
4449	then
4450	if [[ $link_local_output = true ]]
4451	then
4452	printf " ln failed, using cp...\n"
4453	fi
4454	cp ${localout[$i]} ${pathout[$i]}
4455	fi
4456	fi
4457
4458	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4459	then
4460
4461	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4462	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4463	# WIRD DANN KOPIERT
4464	# PER MOVE UMBENANNT WERDEN
4465	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4466	if [[ $link_local_output = true ]]
4467	then
4468	printf " using ln -f\n"
4469	mkdir ${pathout[$i]}
4470	cd ${localout[$i]}
4471	for file in $(ls *)
4472	do
4473	ln -f $file ${pathout[$i]}
4474	done
4475	cd $TEMPDIR
4476	fi
4477	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4478	if [[ ! -f "${pathout[$i]}/_0000" ]]
4479	then
4480	if [[ $link_local_output = true ]]
4481	then
4482	printf " ln failed for .../_0000, using cp...\n"
4483	fi
4484	cp -r ${localout[$i]} ${pathout[$i]}
4485	fi
4486
4487	fi
4488	fi
4489	done
4490	if (( i != 0 ))
4491	then
4492	if [[ $transfer_problems = true ]]
4493	then
4494	printf "\n$striche\n *** OUTPUT-files saved"
4495	printf "\n +++ WARNING: some data transfers failed! \n"
4496	else
4497	printf "\n$striche\n *** all OUTPUT-files saved \n"
4498	fi
4499	fi
4500
4501
4502	# EVENTUELL FOLGEJOB STARTEN
4503	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4504	if [[ -f CONTINUE_RUN ]]
4505	then
4506
4507	if [[ $archive_save = true ]]
4508	then
4509
4510	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4511	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4512	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4513	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4514	# HANDEN
4515	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4516	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4517	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4518	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4519	then
4520	mc=`echo $mc \| sed 's/#/f/g'`
4521	fi
4522
4523
4524	# JOB STARTEN
4525	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4526	echo " $mc"
4527	printf "\n$striche\n"
4528	if [[ $localhost != $fromhost ]]
4529	then
4530
4531	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4532	then
4533	echo "*** ssh will be used to initiate restart-runs!"
4534	echo " return_addres=\"$return_addres\" "
4535	echo " return_username=\"$return_username\" "
4536	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4537	then
4538	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4539	else
4540	if [[ $localhost = ibmkisti ]]
4541	then
4542	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4543	else
4544	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4545	fi
4546	fi
4547	else
4548	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4549	locat=restart; exit
4550	fi
4551
4552	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4553	# DER AKTUELLE JOB ENDET
4554	if [[ $queue = special1q ]]
4555	then
4556	sleep 120
4557	else
4558	sleep 30
4559	fi
4560
4561	else
4562
4563	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4564	# RUFEN WERDEN, AUSSER AUF lcfimm
4565	cd $LOCAL_PWD
4566	if [[ $localhost = lcfimm ]]
4567	then
4568	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4569	else
4570	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4571	fi
4572	cd - > /dev/null
4573	fi
4574	printf "\n$striche\n *** restart-run initiated \n"
4575
4576
4577	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4578	# GEHOLT WORDEN SIND, LOESCHEN
4579	(( i = 0 ))
4580	while (( i < iin ))
4581	do
4582	(( i = i + 1 ))
4583	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4584	then
4585	rm -r $tmp_data_catalog/${frelin[$i]}
4586	fi
4587	done
4588
4589	else
4590
4591	printf "\n +++ no restart-run possible, since errors occured"
4592	printf "\n during the archive process"
4593	fi
4594
4595	fi
4596
4597
4598
4599	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4600	if [[ "$email_notification" != "none" ]]
4601	then
4602
4603	if [[ $localhost != $fromhost ]]
4604	then
4605	if [[ -f CONTINUE_RUN ]]
4606	then
4607	echo "PALM restart run necessary" > email_text
4608	echo "description header of actual run:" >> email_text
4609	cat CONTINUE_RUN >> email_text
4610	echo "mrun-command to restart:" >> email_text
4611	echo "$mc" >> email_text
4612	else
4613	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4614	fi
4615	mail $email_notification < email_text
4616	printf "\n *** email notification sent to \"$email_notification\" "
4617	fi
4618	fi
4619
4620
4621
4622	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4623	cd $HOME
4624	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4625
4626	else
4627
4628
4629	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4630	# CHENDE AKTIONEN DURCHGEFUEHRT
4631
4632	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4633	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4634	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4635	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4636	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4637	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4638	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4639	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4640	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4641	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4642	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4643	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4644	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4645	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4646	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4647	if [[ $use_openmp = true ]]
4648	then
4649	mrun_com=${mrun_com}" -O $threads_per_task"
4650	fi
4651	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4652	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4653	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4654	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4655	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4656	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4657	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4658	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4659	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4660	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4661	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4662	if [[ $do_remote = true ]]
4663	then
4664	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4665	fi
4666
4667
4668	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4669	jobfile=jobfile.$RANDOM
4670
4671
4672	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4673	echo "mkdir $TEMPDIR" >> $jobfile
4674	echo "cd $TEMPDIR" >> $jobfile
4675
4676
4677	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4678	if [[ $do_trace = true ]]
4679	then
4680	echo "set -x" >> $jobfile
4681	else
4682	echo "set +vx" >> $jobfile
4683	fi
4684
4685
4686	# initialize the environment and load modules
4687	if [[ "$init_cmds" != "" ]]
4688	then
4689	echo "$init_cmds" >> $jobfile
4690	fi
4691	if [[ "$module_calls" != "" ]]
4692	then
4693	echo "$module_calls" >> $jobfile
4694	fi
4695
4696
4697	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4698	# DATEI FUER DEN JOB
4699	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4700	then
4701
4702	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4703	# KOPIEREN
4704	if [[ $restart_run != true ]]
4705	then
4706	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4707	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4708	fi
4709
4710	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4711	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4712	echo "set -x" >> $jobfile
4713	if [[ $host = $localhost ]]
4714	then
4715	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4716	else
4717	if [[ $host != ibmkisti ]]
4718	then
4719	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4720	else
4721	# on KISTI's IBM firewall is only opened on interactive node
4722	echo "localdir=\`pwd\`" >> $jobfile
4723	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4724	fi
4725	fi
4726	echo "export SOURCES_COMPLETE=true" >> $jobfile
4727
4728	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4729	# ARBEITSVERZEICHNIS VERSCHIEBEN
4730	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4731	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4732	echo "execute_mrun=true" >> $jobfile
4733	echo " " >> $jobfile
4734
4735	else
4736
4737	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4738	# SOWIE GEGEBENENFALLS DES MAKEFILES
4739	if [[ $do_compile = true ]]
4740	then
4741
4742	source_catalog=SOURCES_FOR_RUN_$fname
4743
4744	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4745	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4746	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4747	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4748	echo "export SOURCES_COMPLETE=true" >> $jobfile
4749	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4750
4751	for filename in $source_list
4752	do
4753	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4754	echo "cat > $filename << \"%END%\"" >> $jobfile
4755	cat $source_catalog/$filename >> $jobfile
4756	echo " " >> $jobfile
4757	echo "%END%" >> $jobfile
4758	echo " " >> $jobfile
4759	done
4760
4761	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4762	echo "cat > Makefile << \"%END%\"" >> $jobfile
4763	cat $source_catalog/Makefile >> $jobfile
4764	echo " " >> $jobfile
4765	echo "%END%" >> $jobfile
4766	echo " " >> $jobfile
4767
4768	echo "cd - > /dev/null" >> $jobfile
4769
4770	fi
4771
4772
4773	# ABSPEICHERN DER KONFIGURATIONSDATEI
4774	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4775	echo "cat > $config_file << \"%END%\"" >> $jobfile
4776	cat $config_file >> $jobfile
4777	echo "%END%" >> $jobfile
4778	echo " " >> $jobfile
4779
4780
4781	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4782	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4783	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4784	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4785	echo "%END%" >> $jobfile
4786	echo "chmod u+x $mrun_script_name" >> $jobfile
4787	echo "execute_mrun=true" >> $jobfile
4788	echo " " >> $jobfile
4789
4790	fi
4791
4792
4793	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4794	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4795	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4796	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4797	if [[ $do_remote = true ]]
4798	then
4799	(( i = 0 ))
4800	while (( i < iin ))
4801	do
4802	(( i = i + 1 ))
4803	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4804	if [[ "${transin[$i]}" = job ]]
4805	then
4806	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4807	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4808	echo " " >> $jobfile
4809	echo "%END%" >> $jobfile
4810	else
4811	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4812	fi
4813
4814	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4815	echo "if [[ \$? = 1 ]]" >> $jobfile
4816	echo "then" >> $jobfile
4817	echo " echo \" \" " >> $jobfile
4818	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4819	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4820	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4821	echo " execute_mrun=false" >> $jobfile
4822	echo "fi" >> $jobfile
4823	done
4824	fi
4825
4826	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4827	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4828	echo "LOCAL_PWD=$working_directory" >> $jobfile
4829	echo "export LOCAL_PWD" >> $jobfile
4830
4831	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4832	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4833	echo "export LOCAL_MRUN_PATH" >> $jobfile
4834
4835	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4836	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4837	then
4838	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4839	fi
4840
4841	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4842	echo "set -x" >> $jobfile
4843	echo "queue=$queue" >> $jobfile
4844	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4845
4846	echo 'ls -al; echo `pwd`' >> $jobfile
4847	echo "cd \$HOME" >> $jobfile
4848	echo "rm -rf $TEMPDIR" >> $jobfile
4849
4850
4851
4852
4853	# JOB PER SUBJOB STARTEN
4854	if [[ $silent = false ]]
4855	then
4856	printf "\n "
4857	else
4858	printf "\n\n"
4859	fi
4860
4861	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
4862	rm -rf $jobfile
4863
4864
4865	fi # ENDE REMOTE-TEIL
4866
4867
4868
4869	# ENDE DER PROZEDUR

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