Home

Context Navigation

source: palm/trunk/SCRIPTS/mrun @ 1070

Last change on this file since 1070 was 1070, checked in by maronga, 12 years ago
last commit documented
Property svn:keywords set to `Id Rev`
File size: 174.5 KB

Rev	Line
[71]	1	#!/bin/ksh
[1046]	2
[1059]	3	# mrun - script for running PALM jobs
	4
[1046]	5	#--------------------------------------------------------------------------------#
	6	# This file is part of PALM.
	7	#
	8	# PALM is free software: you can redistribute it and/or modify it under the terms
	9	# of the GNU General Public License as published by the Free Software Foundation,
	10	# either version 3 of the License, or (at your option) any later version.
	11	#
	12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	15	#
	16	# You should have received a copy of the GNU General Public License along with
	17	# PALM. If not, see <http://www.gnu.org/licenses/>.
	18	#
	19	# Copyright 1997-2012 Leibniz University Hannover
	20	#--------------------------------------------------------------------------------#
	21	#
	22	# Current revisions:
	23	# -----------------
	24	#
[1070]	25	#
[1046]	26	# Former revisions:
	27	# -----------------
[1047]	28	# $Id: mrun 1070 2012-11-28 16:26:33Z maronga $
	29	#
[1070]	30	# 1069 2012-11-28 16:18:43Z maronga
	31	# bugfix: coupling mode was always set to mpi2, typos removed
	32	#
[1059]	33	# 1058 2012-11-21 07:00:35Z raasch
	34	# Intel inspector (inspxe) is given the number of PEs instead of the number of
	35	# nodes
	36	#
[1047]	37	# 1046 2012-11-09 14:38:45Z maronga
	38	# code put under GPL (PALM 3.9)
	39	#
[1059]	40	# 21/03/94 - Siggi - first version (1.0)
	41	# 03/03/94 - Siggi - start with developing the script
	42	#--------------------------------------------------------------------------------#
[1]	43
[1047]	44
[1]	45
	46	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	47
	48	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	49	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	50	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	51
	52	AddFilenames=""
	53	additional_conditions=""
	54	add_source_path=""
	55	afname=""
	56	archive_save=true
	57	archive_system=none
[807]	58	check_namelist_files=true
[920]	59	combine_plot_fields=true
[1]	60	compiler_name=""
	61	cond1=""
	62	cond2=""
	63	config_file=.mrun.config
[206]	64	coupled_dist=""
	65	coupled_mode="mpi1"
[1]	66	cpp_opts=""
[82]	67	cpp_options=""
[1]	68	cpumax=0
	69	cpurest=0
	70	delete_temporary_catalog=true
	71	do_batch=false
	72	do_compile=true
	73	do_remote=false
	74	do_stagein=true
	75	do_stageout=true
	76	do_trace=false
[352]	77	email_notification="none"
[1]	78	exclude=""
	79	executable=""
	80	execution_error=false
[67]	81	fimm=false
[1]	82	fname=test
	83	fromhost=""
[78]	84	global_revision=""
[122]	85	group_number=none
[1]	86	host=""
	87	host_file=""
	88	hp=""
	89	ignore_archive_error=false
	90	input_list=""
	91	interpreted_config_file=""
[164]	92	job_catalog="~/job_queue"
[1]	93	job_on_file=""
	94	keep_data_from_previous_run=false
[183]	95	link_local_input=false
[149]	96	link_local_output=false
[1]	97	localhost_realname=$(hostname)
	98	local_compile=false
[260]	99	local_dvrserver_running=.FALSE.
[1]	100	locat=normal
	101	mainprog=""
	102	makefile=""
[759]	103	max_par_io_str=""
[1]	104	mc=$0
	105	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	106	do
	107	mc=`echo $mc \| cut -f2- -d"/"`
	108	done
[493]	109	module_calls=""
[1]	110	mrun_script_name=$mc
[82]	111	netcdf_inc=""
	112	netcdf_lib=""
[1]	113	netcdf_support=false
	114	node_usage=default
	115	numprocs=""
[206]	116	numprocs_atmos=0
	117	numprocs_ocean=0
[1]	118	OOPT=""
	119	openmp=false
	120	output_list=""
	121	package_list=""
	122	punkte="..........................................................."
	123	queue=none
	124	read_from_config=""
[5]	125	restart_run=false
[622]	126	if [[ `hostname` = rte10 ]]
[1]	127	then
[622]	128	return_addres=133.5.185.60
[693]	129	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
	130	elif [[ `hostname` = climate0 ]]
	131	then
	132	return_addres=165.132.26.68
	133	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
[1021]	134	elif [[ `hostname` = urban00 ]]
	135	then
	136	return_addres=147.46.30.151
	137	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
[622]	138	else
	139	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	140	fi
	141	return_password=""
	142	return_username=$LOGNAME
	143	remotecall=false
	144	remote_username=""
[102]	145	run_coupled_model=false
[1]	146	run_mode=""
	147	scirocco=false
[397]	148	store_on_archive_system=false
[1]	149	striche=" ----------------------------------------------------------------------------"
	150	silent=false
	151	source_list=""
	152	source_path=SOURCE
	153	tasks_per_node=""
	154	threads_per_task=1
	155	tmpcreate=false
	156	tmp_data_catalog=""
	157	transfer_problems=false
	158	usern=$LOGNAME
[377]	159	use_openmp=false
[1]	160	working_directory=`pwd`
	161	TOPT=""
	162	XOPT=""
	163	zeit=$( date \| cut -c 12-19 )
	164
	165	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	166	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	167
[66]	168	typeset -R30 calltime
[1]	169	typeset -L20 spalte1
	170	typeset -L40 spalte2
	171	typeset -L60 spalte3
	172	typeset -L35 string1=`date`
	173	typeset -L12 string2=$usern
	174	typeset -L12 string3=$localhost_realname
	175	typeset -L12 string4
	176	typeset -L12 string5
[201]	177	typeset -L30 version="MRUN 2.0 Rev$Rev: 1070 $"
[1]	178
	179
	180
	181	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	182	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	183
	184	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	185	# EXPORTIERT WERDEN
	186	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	187	export group_number input_list memory numprocs output_list queue run_mode
[1]	188
	189
	190
	191	# FEHLERBEHANDLUNG
	192	# BEI EXIT:
[83]	193	trap 'rm -rf $working_directory/tmp_mrun
[69]	194	if [[ $locat != localhost ]]
[1]	195	then
[22]	196	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	197	# then
	198	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	199	#MRUN-calls on $localhost
	200	#
	201	#date and time user localhost remotehost termination mrun-command
	202	#--------------------------------------------------------------------------------------------------------------------
	203	#%STATEND%
	204	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	205	# fi
	206	#
	207	# # EINTRAG IN DIE STATISTIK-DATEI
	208	# string4=$host
	209	# string5=$locat
	210	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	211	# then
	212	# if [[ $do_batch = true ]]
	213	# then
	214	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	215	# else
	216	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	217	# fi
	218	# fi
[69]	219	echo " " > /dev/null
[1]	220	fi
	221
	222	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	223	then
	224
	225	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	226	(( i = 0 ))
	227	while (( i < iec ))
	228	do
	229	(( i = i + 1 ))
	230	printf "\n *** Execution of ERROR-command:\n"
	231	printf " >>> ${err_command[$i]}\n"
	232	eval ${err_command[$i]}
	233	done
	234	if [[ -n $interpreted_config_file ]] then
	235	rm -rf $interpreted_config_file
	236	fi
[71]	237	if [[ -n .mrun_environment ]] then
	238	rm -rf .mrun_environment
	239	fi
[1]	240	if [[ $tmpcreate = true ]]
	241	then
	242	printf "\n *** Contents of \"$TEMPDIR\":\n"
	243	ls -al; cd
	244	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	245	fi
[260]	246	if [[ "$dvrserver_id" != "" ]]
	247	then
	248	echo "+++ killing dvrserver_id=$dvrserver_id"
	249	kill $dvrserver_id
	250	fi
[1]	251	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	252	then
	253	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	254	fi
	255	printf "\n\n+++ MRUN killed \n\n"
	256	elif [[ $locat != control_c ]]
	257	then
	258	printf "\n\n --> all actions finished\n\n"
	259	printf " Bye, bye $usern !!\n\n"
	260	fi' exit
	261
	262
	263	# BEI TERMINAL-BREAK:
[83]	264	trap 'rm -rf $working_directory/tmp_mrun
[807]	265	rm -rf $working_directory/tmp_check_namelist_files
[69]	266	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	267	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	268	then
	269	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	270	fi
[260]	271	if [[ "$dvrserver_id" != "" ]]
	272	then
	273	echo "+++ killing dvrserver_id=$dvrserver_id"
	274	kill $dvrserver_id
	275	fi
[1]	276	printf "\n+++ MRUN killed by \"^C\" \n\n"
	277	locat=control_c
	278	exit
	279	' 2
	280
	281
[22]	282	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	283	# BEEN SET
	284	if [[ "$PALM_BIN" = "" ]]
	285	then
	286	printf "\n +++ environment variable PALM_BIN has not been set"
	287	printf "\n please set it to the directory where the PALM scripts are located"
	288	locat=palm_bin; exit
	289	fi
[180]	290	export PATH=$PALM_BIN:$PATH
[22]	291
	292
[1]	293
	294	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	295	# FUER FOLGEJOBS BENOETIGT WIRD
[920]	296	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
[1]	297	do
	298	case $option in
	299	(a) afname=$OPTARG;;
[397]	300	(A) store_on_archive_system=true; mc="$mc -A";;
[1]	301	(b) do_batch=true; mc="$mc -b";;
	302	(B) delete_temporary_catalog=false; mc="$mc -B";;
	303	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	304	(C) restart_run=true; mc="$mc -C";;
[1]	305	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	306	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	307	(F) job_on_file="-D"; mc="$mc -F";;
[122]	308	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	309	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	310	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	311	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	312	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	313	(I) ignore_archive_error=true; mc="$mc -I";;
	314	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	315	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	316	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	317	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	318	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	319	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
[622]	320	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
[1]	321	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	322	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	323	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	324	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	325	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	326	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	327	(S) read_from_config=false; mc="$mc -S";;
	328	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
[759]	329	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
[1]	330	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	331	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	332	(v) silent=true; mc="$mc -v";;
[759]	333	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
[1]	334	(x) do_trace=true;set -x; mc="$mc -x";;
	335	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	336	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	337	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[807]	338	(z) check_namelist_files=false; mc="$mc -z";;
[920]	339	(Z) combine_plot_fields=false; mc="$mc -Z";;
[1]	340	(\?) printf "\n +++ unknown option $OPTARG \n"
	341	printf "\n --> type \"$0 ?\" for available options \n"
	342	locat=parameter;exit;;
	343	esac
	344	done
	345
	346
	347	# EVTL. POSITIONSPARAMETER EINLESEN
	348	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	349	shift OPTIND-1
	350
	351
	352	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	353	if [[ "$1" = "?" ]]
	354	then
	355	(printf "\n *** mrun can be called as follows:\n"
[920]	356	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
[1]	357	printf "\n Description of available options:\n"
	358	printf "\n Option Description Default-Value"
	359	printf "\n -a base name of input files equiv. -d"
[400]	360	printf "\n -A archiving when using file-attribute fl"
[1]	361	printf "\n -b batch-job on local machine ---"
	362	printf "\n -B do not delete temporary directory at end ---"
	363	printf "\n -c configuration file .mrun.config"
	364	printf "\n -d base name of files attached to program test"
	365	printf "\n -D preprocessor(cpp)-directives \"\" "
	366	printf "\n -F create remote job file only ---"
	367	printf "\n -h execution host $localhost_realname"
	368	printf "\n -i INPUT control list \"\" "
	369	printf "\n -I archiving errors of previous batch-jobs"
	370	printf "\n will be ignored"
	371	printf "\n -k keep data from previous run"
	372	printf "\n -K additional conditions for controling"
	373	printf "\n usage of conditional code and"
	374	printf "\n env-variables in configuration file \"\" "
	375	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	376	printf "\n -M Makefile name Makefile"
	377	printf "\n -n node usage (shared/not_shared) depending on -h"
	378	printf "\n -o OUTPUT control list \"\" "
	379	printf "\n -O use OpenMP ---"
	380	printf "\n -p software package list \"\" "
	381	printf "\n -q queue \"$queue\" "
	382	printf "\n -r run control list (combines -i -o) \"\" "
	383	printf "\n -s filenames of routines to be compiled \"\" "
	384	printf "\n must end with .f, .f90, .F, or .c !"
	385	printf "\n use \"..\" for more than one file and wildcards"
[837]	386	printf "\n -s LM compiles all locally modified files"
[1]	387	printf "\n -S config file interpreted by shellscript ---"
	388	printf "\n -t allowed cpu-time in seconds (batch) 0"
	389	printf "\n -T tasks per node depending on -h"
	390	printf "\n -u username on remote machine \"\" "
	391	printf "\n -v no prompt for confirmation ---"
[759]	392	printf "\n -w maximum parallel io streams as given by -X"
[1]	393	printf "\n -x tracing of mrun for debug purposes ---"
	394	printf "\n -X # of processors (on parallel machines) 1"
[291]	395	printf "\n -y add appendix \"_O\" to all local output"
	396	printf "\n files (ocean precursor runs followed by"
	397	printf "\n coupled atmosphere-ocean runs) ---"
[206]	398	printf "\n -Y run coupled model, \"#1 #2\" with"
	399	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[920]	400	printf "\n -z disable a priori parameter file check ---"
	401	printf "\n -Z skip combine_plot_fields at the end of "
	402	printf "\n the simulation ---"
[1]	403	printf "\n "
	404	printf "\n Possible values of positional parameter <modus>:"
	405	printf "\n \"?\" - this outline \n\n") \| more
	406	exit
	407	elif [[ "$1" != "" ]]
	408	then
	409	printf "\n +++ positional parameter $1 unknown \n"
	410	locat=parameter; exit
	411	fi
	412
	413
	414
	415	# KURZE STARTMELDUNG
	416	printf "\n*** $version "
	417	printf "\n will be executed. Please wait ..."
	418
	419
[82]	420
	421	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	422	if [[ ! -f $config_file ]]
	423	then
	424	printf "\n\n +++ configuration file: "
	425	printf "\n $config_file"
	426	printf "\n does not exist"
	427	locat=connect; exit
	428	fi
	429
	430
	431	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	432	line=""
	433	grep "%host_identifier" $config_file > tmp_mrun
	434	while read line
	435	do
[206]	436	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	437	then
	438	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	439	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	440	if [[ $localhost_realname = $HOSTNAME ]]
[82]	441	then
	442	localhost=$host_identifier
	443	break
	444	fi
	445	fi
	446	done < tmp_mrun
	447
	448	if [[ "$localhost" = "" ]]
	449	then
	450	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	451	printf "\n for local host \"$localhost_realname\"."
	452	printf "\n Please add line"
	453	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	454	printf "\n to the configuration file."
	455	locat=localhost; exit
	456	fi
	457
	458
	459	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	460	case $localhost_realname in
[397]	461	(r1\|r2\|h01\|b01) archive_system=tivoli;;
[82]	462	(cs*) archive_system=ut;;
	463	(fimm.bccs.uib.no) fimm=true;;
	464	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	465	(scirocco) scirocco=true;;
	466	esac
	467
	468
	469
[1]	470	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	471	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	472	[[ "$afname" = "" ]] && afname=$fname
	473
	474
	475	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	476	if [[ "$run_mode" != "" ]]
	477	then
	478	input_list="$input_list $run_mode"
	479	output_list="$output_list $run_mode"
	480	fi
	481
	482
	483	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	484	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	485	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	486	# STARTET)
	487	if [[ "$fromhost" = "" ]]
	488	then
	489	fromhost=$localhost
	490	fi
	491
	492
	493	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	494	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	495	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	496	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	497	if [[ -n $host && "$host" != $localhost ]]
	498	then
	499	do_batch=true
	500	do_remote=true
	501	case $host in
[1040]	502	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
[1]	503	(*) printf "\n"
[83]	504	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	505	printf "\n is not available"
[1]	506	locat=nqs; (( iec = 0 )); exit;;
	507	esac
	508	else
	509	host=$localhost
	510	fi
	511
	512
	513	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	514	if [[ -n $additional_conditions ]]
	515	then
[69]	516	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	517	cond1=`echo $additional_conditions \| cut -d" " -f1`
	518	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	519	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	520	if [[ -n $dummy ]]
	521	then
	522	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	523	locat=options; exit
	524	fi
[503]	525	block=_$cond1
	526	[[ -n $cond2 ]] && block=${block}_$cond2
[1]	527	fi
	528
	529
[206]	530	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	531	if [[ $run_coupled_model = true ]]
	532	then
	533
	534	if [[ -n $coupled_dist ]]
	535	then
	536
	537	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	538	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	539
	540	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	541	then
	542
	543	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	544	printf "\n PEs (total) : $numprocs"
	545	printf "\n PEs (atmosphere): $numprocs_atmos"
	546	printf "\n PEs (ocean) : $numprocs_ocean"
	547	locat=coupling; exit
	548
	549	fi
	550
	551	else
	552
	553	(( numprocs_ocean = $numprocs / 2 ))
	554	(( numprocs_atmos = $numprocs / 2 ))
	555
	556	fi
	557	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	558
	559	# GET coupled_mode FROM THE CONFIG FILE
	560	line=""
	561	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	562	while read line
	563	do
[1069]	564	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
[206]	565	then
	566	coupled_mode="mpi2"
	567	fi
	568	done < tmp_mrun
	569
	570	fi
	571
	572
[1]	573	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	574	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	575	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	576	then
	577	if [[ $ignore_archive_error = false ]]
	578	then
	579	printf "\n +++ data archiving of previous run failed"
	580	printf "\n see directory \~/job_queue on remote machine"
	581	locat=archive; exit
	582	else
	583	printf "\n +++ warning: data archiving in a previous run failed"
	584	printf "\n MRUN continues, trying to get backup copy"
	585	fi
	586	fi
	587
	588
	589
	590	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	591	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	592	if [[ "$read_from_config" = false ]]
	593	then
	594
	595	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	596	while read zeile
	597	do
	598	[[ $silent = false ]] && printf "."
	599
	600
	601	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	602	# ERSETZEN
	603	eval zeile=\"$zeile\"
	604
	605
	606	# INTERPRETATION DER ZEILE
[21]	607	if [[ "$(echo $zeile)" = "" ]]
[1]	608	then
[21]	609	# LEERZEILE, KEINE AKTION
	610	continue
[1]	611
[21]	612	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	613	then
	614
[1]	615	# ZEILE IST KOMMENTARZEILE
	616	true
	617
	618	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	619	then
	620
	621	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	622	zeile=$(echo $zeile \| cut -c2-)
[69]	623	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	624	var=`echo $zeile \| cut -d" " -f1`
	625	value=`echo $zeile \| cut -d" " -s -f2`
	626	for_host=`echo $zeile \| cut -d" " -s -f3`
	627	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	628	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	629
	630	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	631	then
	632
	633	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	634	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	635	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	636
	637
	638	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	639	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	640	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	641	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	642	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	643	# KONFIGURATIONSDATEI
	644	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	645	then
	646	eval $var=\$value
	647
	648	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	649	if [[ $do_trace = true ]]
	650	then
	651	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	652	fi
	653	fi
	654
	655	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	656	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	657	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	658	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	659	if [[ $var = host ]]
	660	then
	661	if [[ -n $host && "$host" != $localhost ]]
	662	then
	663	do_batch=true
	664	do_remote=true
	665	case $host in
[1040]	666	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
[83]	667	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	668	printf "\n is not available"
[1]	669	locat=nqs; exit;;
	670	esac
	671	else
	672	host=$localhost
	673	fi
	674	fi
	675
	676	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	677	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	678	# DEN PROGRAMMEN BENOETIGT WERDEN
	679	export $var
	680	fi
	681
	682
	683
	684
	685	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	686	then
	687
	688	# ZEILE DEFINIERT ERROR-KOMMANDO
	689	(( iec = iec + 1 ))
	690	zeile=$(echo $zeile \| cut -c4-)
	691	err_command[$iec]="$zeile"
	692
	693	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	694	then
	695
	696	# ZEILE DEFINIERT INPUT-KOMMANDO
	697	(( iic = iic + 1 ))
	698	zeile=$(echo $zeile \| cut -c4-)
	699	in_command[$iic]="$zeile"
	700
	701	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	702	then
	703
	704	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	705	(( ioc = ioc + 1 ))
	706	zeile=$(echo $zeile \| cut -c4-)
	707	out_command[$ioc]="$zeile"
	708
	709	else
	710
	711	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	712	# s2a: in/out - Feld
	713	# s2b: loc - Feld (optional)
	714	# s2c: tr/ar - Feld (optional)
[69]	715	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	716	s1=`echo $zeile \| cut -d" " -f1`
	717	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	718	s2a=$(echo $s2 \| cut -d":" -f1)
	719	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	720	then
	721	s2b=""
	722	s2c=""
	723	else
[69]	724	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	725	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	726	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	727	fi
[69]	728	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	729	s3=`echo $zeile \| cut -d" " -f3`
	730	s4=`echo $zeile \| cut -d" " -s -f4`
	731	s5=`echo $zeile \| cut -d" " -s -f5`
	732	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	733
	734
	735	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	736	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	737	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	738	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	739	# HANDEN SEIN MUSS (D.H. s2b = loc)
	740	IFSALT="$IFS"; IFS="$IFS:"
	741	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	742	then
	743	found=false
	744	for actual in $input_list
	745	do
	746	for formal in $s3
	747	do
	748	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	749	done
	750	done
	751	if [[ $found = true ]]
	752	then
	753	(( iin = iin + 1 ))
	754	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	755	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	756	extin[$iin]=$s6
	757	fi
	758	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	759	then
	760	found=false
	761	for actual in $output_list
	762	do
	763	for formal in $s3
	764	do
	765	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	766	done
	767	done
	768	if [[ $found = true ]]
	769	then
	770	(( iout = iout + 1 ))
	771	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	772	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	773	fi
	774	elif [[ "$s2a" != in && "$s2a" != out ]]
	775	then
	776	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	777	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	778	locat=connect; exit
	779	fi
	780	IFS="$IFSALT"
	781	fi
	782	done < $config_file
	783
	784	else
	785
	786
	787	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	788	[[ $silent = false ]] && printf "..."
	789	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	790	export interpreted_config_file=.icf.$RANDOM
	791
	792
[69]	793
	794	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	795	# VERFUEGUNG STELLEN
	796	cat > .mrun_environment << %%END%%
	797	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	798	config_file = '$config_file', do_remote = '$do_remote',
	799	do_trace = '$do_trace', host = '$host',
	800	input_list = '$input_list', icf = '$interpreted_config_file',
	801	localhost = '$localhost', output_list = '$output_list' /
	802
	803	%%END%%
	804
	805	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	806	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	807	mrun_memory=$memory
[127]	808	mrun_group_number=$group_number
[69]	809	mrun_cpumax=$cpumax
	810	mrun_numprocs=$numprocs
	811
[251]	812	if [[ $localhost_realname = "sx-fep" ]]
[66]	813	then
[251]	814	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	815	else
[503]	816
	817	if [[ "$host" != $localhost ]]
	818	then
	819
	820	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
	821	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
	822	if [[ $? != 0 ]]
	823	then
	824	printf "\n\n +++ no interpret_config found"
	825	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
	826	locat=interpret_config; exit
	827	fi
	828	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
	829	$interpret_config_executable
	830
	831	else
	832
	833	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
	834	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
	835	then
	836	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
	837	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
	838	locat=interpret_config; exit
	839	else
	840	interpret_config${block}.x
	841	fi
	842
	843	fi
[66]	844	fi
[71]	845	rm .mrun_environment
[1]	846
[71]	847
[1]	848	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	849	chmod u+x $interpreted_config_file
	850	export PATH=$PATH:.
	851	. $interpreted_config_file
[71]	852	rm $interpreted_config_file
[1]	853
[71]	854
[69]	855	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[759]	856	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	857	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[759]	858	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	859	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
	860	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
	861	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
[69]	862
[1]	863	fi
	864
	865
	866	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	867	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	868	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	869	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	870	if [[ "$SOURCES_COMPLETE" = "" ]]
	871	then
	872
	873	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	874	# VEREINBART WURDE
	875	source_path=""
	876	line=""
	877	grep "%source_path" $config_file > tmp_mrun
	878	while read line
	879	do
	880	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	881	then
	882	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	883	then
	884	global_source_path=`echo $line \| cut -d" " -f2`
	885	fi
	886	fi
	887	done < tmp_mrun
	888
	889	line=""
	890	found=false
	891	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	892	while read line
	893	do
	894	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	895	then
	896	if [[ $found = true ]]
	897	then
	898	printf "\n\n +++ more than one source path found in configuration file"
	899	printf "\n for local host \"$localhost\" "
	900	locat=source_path; exit
	901	fi
	902	source_path=`echo $line \| cut -d" " -f2`
	903	found=true
	904	fi
	905	done < tmp_mrun
	906	rm tmp_mrun
	907
	908	if [[ "$source_path" = "" ]]
	909	then
	910	if [[ "$global_source_path" != "" ]]
	911	then
	912	source_path=$global_source_path
	913	else
	914	printf "\n\n +++ no source path found in configuration file"
	915	printf "\n for local host \"$localhost\" "
	916	locat=source_path; exit
	917	fi
	918	fi
	919	eval source_path=$source_path
	920
	921	if [[ ! -d $source_path ]]
	922	then
	923	printf "\n\n +++ source path \"$source_path\" on local host"
	924	printf "\n \"$localhost\" does not exist"
	925	locat=source_path; exit
	926	fi
	927
	928	fi
	929
	930
[78]	931	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	932	# DURCH OPTION -G MITGETEILT)
[693]	933	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
[78]	934	then
	935	global_revision=`svnversion $source_path 2>/dev/null`
	936	global_revision="Rev: $global_revision"
	937	fi
[1]	938
[78]	939
[1]	940	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	941	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	942	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	943	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	944	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	945	if [[ -n $host && "$host" != $localhost ]]
	946	then
	947	do_batch=true
	948	do_remote=true
	949	case $host in
[1040]	950	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
[1]	951	(*) printf "\n"
[83]	952	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	953	printf "\n is not available"
[1]	954	locat=nqs; (( iec = 0 )); exit;;
	955	esac
	956	else
	957	host=$localhost
	958	fi
	959
	960
	961	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	962	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	963	then
	964
	965	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	966	if [[ ! -n $numprocs ]]
	967	then
	968	printf "\n"
	969	printf "\n +++ option \"-K parallel\" requires additional specification"
	970	printf "\n of the number of processors to be used by"
	971	printf "\n mrun-option \"-X\" or by environment-variable"
	972	printf "\n \"numprocs\" in the configuration file"
	973	locat=numprocs; (( iec = 0 )); exit
	974	fi
	975
	976	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	977	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	978	# GESAMTPROZESSORANZAHL IST
[1039]	979	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
[1]	980	then
[759]	981	printf "\n"
	982	printf "\n +++ option \"-T\" (tasks per node) is missing"
	983	printf "\n set -T option or define tasks_per_node in the config file"
	984	locat=tasks_per_node; (( iec = 0 )); exit
	985	fi
[1039]	986	if [[ $host != lcflow && $host != lcxt5m ]]
[759]	987	then
[848]	988	(( ival = $tasks_per_node ))
	989	(( pes = numprocs ))
	990	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	991	# then
	992	# (( pes = pes - 1 ))
	993	# fi
	994	(( ii = pes / ival ))
	995	if (( pes - ii * ival > 0 ))
	996	then
	997	printf "\n"
	998	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	999	printf "\n divisor of the total number of processors (option \"-X\")"
	1000	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1001	locat=tasks_per_node; (( iec = 0 )); exit
	1002	fi
[1]	1003	fi
	1004
[759]	1005
[1]	1006	# IBMY HAT NUR EINEN KNOTEN
	1007	if [[ $host = ibmy ]]
	1008	then
	1009	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1010	then
	1011	printf "\n"
	1012	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1013	printf "\n total number of processors (option \"-X\")"
	1014	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1015	locat=tasks_per_node; (( iec = 0 )); exit
	1016	fi
	1017	fi
	1018
[377]	1019
	1020	# SETTINGS FOR SUBJOB-COMMAND
[622]	1021	TOPT="-T $tasks_per_node"
[1]	1022	OOPT="-O $threads_per_task"
	1023
	1024	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1025	if [[ "$tasks_per_node" != "" ]]
	1026	then
	1027	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1028	fi
	1029
	1030	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1031	# SETZEN
	1032	if [[ $node_usage = default ]]
	1033	then
	1034	if [[ $host = ibms ]]
	1035	then
	1036	node_usage=shared
[181]	1037	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1038	then
	1039	node_usage=singlejob
[1]	1040	else
	1041	node_usage=not_shared
	1042	fi
	1043	fi
[181]	1044
[635]	1045	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
[1]	1046	then
	1047	printf "\n"
	1048	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1049	printf "\n \"shared\" or \"not_shared\""
	1050	locat=tasks_per_node; (( iec = 0 )); exit
	1051	fi
	1052
	1053	fi
	1054
	1055	# PRUEFEN, OB HOSTFILE EXISTIERT
	1056	if [[ -n $hostfile ]]
	1057	then
	1058	if [[ ! -f $hostfile ]]
	1059	then
	1060	printf "\n"
	1061	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1062	locat=hostfile; exit
	1063	fi
	1064	fi
	1065
	1066	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1067	if [[ $host = ibmy && $do_remote = false ]]
	1068	then
	1069	if [[ ! -f $HOME/.rhosts ]]
	1070	then
	1071	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1072	printf "\n\n *** file:"
	1073	printf "\n $HOME/.rhosts"
	1074	printf "\n was created\n"
	1075	fi
	1076	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1077	then
	1078	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1079	printf "\n\n *** file:"
	1080	printf "\n $HOME/.rhosts"
	1081	printf "\n was extended by the name of the current host\n"
	1082	fi
	1083	fi
	1084
	1085
[759]	1086	# Set default value for the maximum number of parallel io streams
	1087	if [[ "$maximum_parallel_io_streams" = "" ]]
	1088	then
	1089	maximum_parallel_io_streams=$numprocs
	1090	fi
[1]	1091
[759]	1092
[1]	1093	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1094	if [[ $queue = none ]]
	1095	then
	1096	case $host in
[312]	1097	(ibmh) queue=no_class;;
[693]	1098	(ibmkisti) queue=class.32plus;;
[1]	1099	(ibmy) queue=parallel;;
[1040]	1100	(lckiaps) queue=normal;;
[440]	1101	(lckyoto) queue=ph;;
[821]	1102	(lcsgib) queue=testq;;
	1103	(lcsgih) queue=testq;;
[635]	1104	(lctit) queue=S;;
[1]	1105	(nech) queue=none;;
[253]	1106	(necriam) queue=SP;;
[1]	1107	(unics) queue=unics;;
	1108	esac
	1109	fi
	1110
	1111
	1112	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1113	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1114	# ERMITTELN
	1115	(( i = 0 ))
	1116	while (( i < iin ))
	1117	do
	1118	(( i = i + 1 ))
	1119	(( maxcycle = 0 ))
	1120
	1121	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1122	if [[ "${actionin[$i]}" = di ]]
	1123	then
	1124	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1125	# REM-MASCHINE AUSWERTEN
	1126	eval filename=${pathin[$i]}/${endin[$i]}
	1127	else
	1128	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1129	# REM-MASCHINE AUSWERTEN
	1130	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1131	fi
[892]	1132	eval pathname=${pathin[$i]}
[1]	1133
[920]	1134	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
	1135	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
	1136	then
	1137	filename_input=$filename
	1138	fi
[892]	1139
[1]	1140	# PRUEFEN AUF VORHANDENSEIN
	1141	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
[746]	1142	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
[1]	1143	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1144	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1145	then
	1146	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1147	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1148	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1149	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1150	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1151	if [[ "${transin[$i]}" != "locopt" ]]
	1152	then
	1153	printf "\n\n +++ INPUT-file: "
	1154	if [[ "${extin[$i]}" = "" ]]
	1155	then
	1156	printf "\n $filename"
	1157	else
	1158	printf "\n $filename.${extin[$i]}"
	1159	fi
	1160	printf "\n does not exist\n"
	1161	locat=input; exit
	1162	else
	1163	transin[$i]="unavailable"
	1164	fi
	1165	else
	1166
	1167	# ZYKLUSNUMMER FESTSTELLEN
	1168	ls -1 -d $filename > filelist 2>/dev/null
	1169	ls -1 -d $filename.* >> filelist 2>/dev/null
	1170	while read zeile
	1171	do
	1172	cycle=$(print $zeile \| cut -f2 -d".")
	1173	if [[ "$cycle" = "$zeile" ]]
	1174	then
	1175	(( icycle = 0 ))
	1176	elif [[ "$cycle" = "${extin[$i]}" ]]
	1177	then
	1178	(( icycle = 0 ))
	1179	else
	1180	(( icycle = $cycle ))
	1181	fi
	1182	if (( icycle > maxcycle ))
	1183	then
	1184	(( maxcycle = icycle ))
	1185	file_to_be_used=$zeile
	1186	fi
	1187	done <filelist
	1188	rm filelist
	1189
	1190	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1191	if (( maxcycle > 0 ))
	1192	then
	1193	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1194	then
	1195	filename=${filename}.$maxcycle.${extin[$i]}
	1196	else
	1197	filename=${filename}.$maxcycle
	1198	fi
	1199	else
	1200	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1201	then
	1202	filename=${filename}.${extin[$i]}
	1203	fi
	1204	fi
	1205
	1206	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1207	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1208	absnamein[$i]=$filename
	1209	if (( maxcycle > 0 ))
	1210	then
	1211	if [[ "${actionin[$i]}" = di ]]
	1212	then
	1213	frelin[$i]=${endin[$i]}.$maxcycle
	1214	else
	1215	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1216	fi
	1217	else
	1218	if [[ "${actionin[$i]}" = di ]]
	1219	then
	1220	frelin[$i]=${endin[$i]}
	1221	else
	1222	frelin[$i]=${afname}${endin[$i]}
	1223	fi
	1224	fi
	1225
	1226	fi
	1227	done
[920]	1228
[1]	1229	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1230	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1231	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1232	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1233	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1234	(( i = 0 ))
	1235	while (( i < iout ))
	1236	do
	1237	(( i = i + 1 ))
	1238	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1239	then
[260]	1240	if [[ "${actionout[$i]}" = tr ]]
[1]	1241	then
	1242	actionout[$i]=""
[260]	1243	elif [[ "${actionout[$i]}" = trpe ]]
	1244	then
	1245	actionout[$i]=pe
[1]	1246	elif [[ "${actionout[$i]}" = tra ]]
	1247	then
	1248	actionout[$i]=a
	1249	fi
	1250	(( maxcycle = 0 ))
	1251	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1252	eval catalogname=${pathout[$i]}
	1253	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
[746]	1254	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
[1]	1255	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1256	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1257	then
	1258
	1259	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1260	if cat /dev/null > $filename
	1261	then
	1262	rm $filename
	1263	else
	1264
	1265	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1266	if [[ ! -d $catalogname ]]
	1267	then
	1268	if mkdir -p $catalogname
	1269	then
	1270	printf "\n\n *** directory:"
	1271	printf "\n $catalogname"
	1272	printf "\n was created\n"
	1273	else
	1274	printf "\n\n +++ OUTPUT-file:"
	1275	printf "\n $filename"
	1276	printf "\n cannot be created, because directory does not exist"
	1277	printf "\n and cannot be created either"
	1278	printf "\n"
	1279	locat=output ; exit
	1280	fi 2>/dev/null
	1281	else
	1282	printf "\n\n +++ OUTPUT-file:"
	1283	printf "\n $filename"
	1284	printf "\n cannot be created, although directory exists"
	1285	printf "\n"
	1286	locat=output ; exit
	1287	fi
	1288	fi 2>/dev/null
	1289	else
	1290
	1291	# ZYKLUSNUMMER FESTSTELLEN
	1292	ls -1 -d $filename > filelist 2>/dev/null
	1293	ls -1 -d $filename.* >> filelist 2>/dev/null
	1294	while read zeile
	1295	do
	1296	cycle=$(print $zeile \| cut -f2 -d".")
	1297	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1298	then
	1299	(( icycle = 1 ))
	1300	else
	1301	(( icycle = $cycle + 1 ))
	1302	fi
	1303	if (( icycle > maxcycle ))
	1304	then
	1305	(( maxcycle = icycle ))
	1306	fi
	1307	done <filelist
	1308	rm filelist
	1309	fi
	1310
	1311	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1312	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1313	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1314	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1315	if [[ "${actionout[$i]}" != a ]]
	1316	then
	1317	if (( maxcycle > 0 ))
	1318	then
	1319	filename=${filename}.$maxcycle
	1320	if cat /dev/null > $filename
	1321	then
	1322	rm $filename
	1323	else
	1324	printf "\n +++ OUTPUT-file:"
	1325	printf "\n $filename"
	1326	printf "\n cannot be created"
	1327	locat=output ; exit
	1328	fi
	1329	fi
	1330	else
	1331	(( maxcycle = maxcycle - 1 ))
	1332	if (( maxcycle > 0 ))
	1333	then
	1334	filename=${filename}.$maxcycle
	1335	fi
	1336	fi
	1337
	1338	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1339	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1340	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1341	pathout[$i]=$filename
	1342	if (( maxcycle > 0 ))
	1343	then
	1344	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1345	else
	1346	frelout[$i]=${fname}${endout[$i]}
	1347	fi
	1348
	1349	fi
	1350	done
	1351
	1352
[260]	1353	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1354	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1355	then
[260]	1356	if [[ "$dvr_inc" = "" ]]
[83]	1357	then
[260]	1358	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1359	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1360	locat=dvr; exit
[83]	1361	fi
[260]	1362	if [[ "$dvr_lib" = "" ]]
[83]	1363	then
[260]	1364	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1365	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1366	locat=dvr; exit
[83]	1367	fi
	1368	fi
	1369
	1370
[1]	1371	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1372	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1373	# UEBERSETZT ZU WERDEN)
	1374	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1375	then
	1376	printf "\n +++ neither main program nor executable defined"
	1377	locat=source; exit
	1378	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1379	then
	1380	printf "\n +++ main program as well as executable defined"
	1381	locat=source; exit
	1382	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1383	then
	1384	do_compile=false
	1385	fi
	1386
	1387
[191]	1388	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1389	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1390	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1391	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1392	then
	1393	rm -rf SOURCES_FOR_RUN_$fname
	1394	mkdir SOURCES_FOR_RUN_$fname
	1395	fi
	1396
	1397
[1]	1398	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1399	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1400	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1401	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1402	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1403	then
	1404
[5]	1405	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
[1]	1406
[838]	1407	if [[ "$source_list" = LOCALLY_MODIFIED ]]
[1]	1408	then
	1409
[5]	1410	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1411	source_list=""
	1412	cd $source_path
	1413
	1414
	1415	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1416	if [[ ! -d .svn ]]
	1417	then
	1418	printf "\n\n +++ source directory"
	1419	printf "\n \"$source_path\" "
	1420	printf "\n is not under control of \"subversion\"."
[306]	1421	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1422	fi
	1423
	1424
	1425	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1426	Filenames=""
[69]	1427	svn status > tmp_mrun
	1428	while read line
[5]	1429	do
	1430	firstc=`echo $line \| cut -c1`
	1431	if [[ $firstc = M \|\| $firstc = "?" ]]
	1432	then
	1433	Name=`echo "$line" \| cut -c8-`
	1434	extension=`echo $Name \| cut -d. -f2`
	1435	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1436	then
	1437	Filenames="$Filenames "$Name
	1438	fi
	1439	fi
[69]	1440	done < tmp_mrun
[5]	1441
	1442
	1443	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1444	for dateiname in $Filenames
	1445	do
	1446	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1447	source_list=$source_list"$dateiname "
	1448	done
	1449
	1450	cd - > /dev/null
	1451
	1452
[1]	1453	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1454	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1455	# VORHANDEN
[5]	1456	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1457	then
	1458
	1459	cd $source_path
	1460
	1461	for filename in $source_list
	1462	do
	1463
	1464	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1465	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1466	then
	1467	printf "\n +++ source code file: $filename"
	1468	printf "\n must not contain (\"/\") "
	1469	locat=source; exit
	1470	fi
	1471
	1472	if [[ ! -f $filename ]]
	1473	then
	1474	printf "\n +++ source code file: $filename"
	1475	printf "\n does not exist"
	1476	locat=source; exit
	1477	else
	1478	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1479	fi
	1480
	1481	done
	1482
	1483	cd - > /dev/null
	1484
	1485	fi
	1486
	1487
	1488	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1489	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1490	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1491	if [[ $restart_run != true ]]
[1]	1492	then
	1493
	1494	if [[ ! -f "$source_path/$mainprog" ]]
	1495	then
	1496	printf "\n\n +++ main program: $mainprog"
	1497	printf "\n does not exist in source directory"
	1498	printf "\n \"$source_path\"\n"
	1499	locat=source; exit
	1500	else
	1501	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1502	then
	1503	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1504	source_list=${mainprog}" $source_list"
	1505	fi
	1506	fi
	1507	fi
	1508
	1509
[211]	1510	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1511	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1512	if [[ "$restart_run" != true ]]
	1513	then
	1514	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1515	if [[ ! -f $makefile ]]
	1516	then
	1517	printf "\n +++ file \"$makefile\" does not exist"
	1518	locat=make; exit
	1519	else
	1520	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1521	fi
	1522	fi
	1523
	1524
[1]	1525	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1526	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1527	then
	1528
	1529	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1530	if [[ ! -d $add_source_path ]]
	1531	then
	1532	printf "\n\n +++ WARNING: additional source code directory"
	1533	printf "\n \"$add_source_path\" "
	1534	printf "\n does not exist or is not a directory."
	1535	printf "\n No source code will be used from this directory!\n"
	1536	add_source_path=""
[931]	1537	if [[ $silent == false ]]
	1538	then
	1539	sleep 3
	1540	fi
[1]	1541	else
	1542
	1543	cd $add_source_path
[211]	1544	found=false
[1]	1545
	1546	Names=$(ls -1 *.f90 2>&1)
	1547	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1548	Names=$(ls -1 *.F90 2>&1)
	1549	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1550	Names=$(ls -1 *.F 2>&1)
	1551	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1552	Names=$(ls -1 *.f 2>&1)
	1553	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1554	Names=$(ls -1 *.c 2>&1)
	1555	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1556
	1557	cd - > /dev/null
	1558	cd SOURCES_FOR_RUN_$fname
	1559
[211]	1560	# COPY MAKEFILE IF EXISTING
	1561	if [[ -f $add_source_path/Makefile ]]
	1562	then
	1563	printf "\n\n *** user Makefile from directory"
	1564	printf "\n \"$add_source_path\" is used \n"
[931]	1565	if [[ $silent == false ]]
	1566	then
	1567	sleep 1
	1568	fi
[211]	1569	cp $add_source_path/Makefile .
	1570	fi
	1571
[1]	1572	for dateiname in $AddFilenames
	1573	do
	1574	if [[ -f $dateiname ]]
	1575	then
	1576	printf "\n +++ source code file \"$dateiname\" found in additional"
	1577	printf "\n source code directory \"$add_source_path\" "
[211]	1578	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1579	printf "\n from directory \"$source_path\"."
[1]	1580	locat=source; exit
	1581	fi
	1582
	1583	cp $add_source_path/$dateiname .
	1584	source_list="$source_list $dateiname"
	1585
[211]	1586	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1587	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1588	then
	1589	printf "\n\n +++ user file \"$dateiname\" "
	1590	printf "\n is not listed in Makefile \n"
	1591	locat=source; exit
	1592	else
	1593
[1]	1594	# Default User-Interface von der Liste entfernen, falls Datei
	1595	# ein User-Interface enthaelt
[211]	1596	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1597	# then
	1598	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1599	# then
	1600	# rm -rf user_interface.f90
	1601	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1602	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1603	# printf "\n since a user-interface is found in file"
	1604	# printf "\n \"$add_source_path/$dateiname\" \n"
	1605	# sleep 3
	1606	# else
	1607	if [[ $found = false ]]
[1]	1608	then
[211]	1609	found=true
	1610	printf "\n\n *** following user file(s) added to the"
	1611	printf " files to be translated:\n "
[1]	1612	fi
[211]	1613	printf "$dateiname "
[931]	1614	if [[ $silent == false ]]
	1615	then
	1616	sleep 0.5
	1617	fi
	1618
[1]	1619	fi
	1620	done
[211]	1621	[[ $found = true ]] && printf "\n"
[1]	1622	cd - > /dev/null
	1623	fi
	1624	fi
	1625
	1626
	1627	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1628	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1629	if [[ $restart_run != true && -n $package_list ]]
[1]	1630	then
	1631
	1632	cd $source_path
	1633
	1634	for package in $package_list
	1635	do
	1636
	1637	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1638
	1639	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1640	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1641	# LIEFERT
	1642	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1643
	1644
	1645	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1646	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1647	for source_list_name in $package_source_list
	1648	do
	1649	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1650	then
	1651
	1652	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1653	ending=`echo $source_list_name \| cut -f2 -d.`
	1654	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1655	then
	1656	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1657	source_list="$source_list $source_list_name"
	1658	fi
	1659	fi
	1660	done
	1661	done
	1662
	1663	cd - > /dev/null
	1664	fi
	1665
	1666
	1667	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1668	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1669	# if [[ "$restart_run" != true ]]
	1670	# then
	1671	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1672	# if [[ ! -f $makefile ]]
	1673	# then
	1674	# printf "\n +++ file \"$makefile\" does not exist"
	1675	# locat=make; exit
	1676	# else
	1677	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1678	# fi
	1679	# fi
[1]	1680
	1681	fi # do_compile=true
	1682
	1683
	1684	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1685	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1686	if [[ $do_compile = true ]]
	1687	then
	1688
	1689	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1690	# ZUSAMMENSETZEN
[83]	1691	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1692	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1693	then
[82]	1694	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1695	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1696	then
[82]	1697	cpp_options="$cpp_options -D__nec"
	1698	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1699	then
	1700	cpp_options="$cpp_options -D__lc"
[1]	1701	else
[82]	1702	cpp_options="$cpp_options -D__$localhost"
[1]	1703	fi
[83]	1704
	1705	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1706	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1707	then
[82]	1708	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1709	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1710	else
[82]	1711	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1712	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1713	fi
[83]	1714
	1715	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1716	if [[ -n $package_list ]]
	1717	then
	1718	for package in $package_list
	1719	do
	1720	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1721	then
	1722	if [[ $package != "dvrp_graphics+1PE" ]]
	1723	then
[82]	1724	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1725	else
[82]	1726	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1727	export use_seperate_pe_for_dvrp_output=true
	1728	fi
	1729	else
	1730	if [[ $package != "dvrp_graphics+1PE" ]]
	1731	then
[82]	1732	cpp_options="$cpp_options -D__$package"
[1]	1733	else
[82]	1734	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1735	export use_seperate_pe_for_dvrp_output=true
	1736	fi
	1737	fi
	1738	done
	1739	fi
[83]	1740
	1741	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1742	if [[ -n $cpp_opts ]]
	1743	then
	1744	for popts in $cpp_opts
	1745	do
[82]	1746	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1747	then
	1748	cpp_options="${cpp_options},-D__$popts=__$popts"
	1749	else
	1750	cpp_options="$cpp_options -D__$popts"
	1751	fi
[1]	1752	done
	1753	fi
	1754
	1755	else
	1756
	1757
	1758	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1759	if [[ $do_remote = false ]]
	1760	then
	1761	if [[ ! -f $executable ]]
	1762	then
	1763	printf "\n +++ executable file: $executable"
	1764	printf "\n does not exist"
	1765	locat=executable; exit
	1766	fi
	1767	fi
	1768	fi
	1769
	1770
	1771	# JOBMODUS FESTSTELLEN
[635]	1772	if [[ "$ENVIRONMENT" = BATCH ]]
[1]	1773	then
	1774	jobmo=BATCH
	1775	else
	1776	jobmo=INTERACTIVE
	1777	fi
	1778
	1779
[635]	1780	# no interactive runs on lctit
	1781	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
	1782	then
	1783	printf "\n +++ no interactive runs allowed on host \"$host\" "
	1784	printf "\n please submit batch job using mrun option \"-b\" \n"
	1785	locat=normal; exit
	1786	fi
	1787
	1788
[1]	1789	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1790	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1791	if [[ "$compiler_name" = "" ]]
	1792	then
[82]	1793
[220]	1794	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1795	locat=compiler_name; exit
	1796
[1]	1797	fi
	1798
	1799
[251]	1800	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	1801	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	1802
	1803
	1804
	1805	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	1806	kennung=$RANDOM
	1807	if [[ "$tmp_user_catalog" = "" ]]
	1808	then
[312]	1809	if [[ $localhost = ibmh ]]
[1]	1810	then
[312]	1811	tmp_user_catalog=$SCRATCH
[1]	1812	elif [[ $localhost = nech ]]
	1813	then
	1814	tmp_user_catalog=$WRKSHR
	1815	else
	1816	tmp_user_catalog=/tmp
	1817	fi
	1818	fi
	1819	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	1820
	1821
	1822	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	1823	# BESTIMMEN
	1824	if [[ "$tmp_data_catalog" = "" ]]
	1825	then
[622]	1826	if [[ $localhost = nech ]]
[1]	1827	then
	1828	tmp_data_catalog=$WRKSHR/mrun_restart_data
	1829	else
	1830	tmp_data_catalog=/tmp/mrun_restart_data
	1831	fi
	1832	fi
	1833
	1834
	1835	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	1836	# ERSETZEN
	1837	if [[ $do_remote = false && $do_compile = true ]]
	1838	then
	1839	eval fopts=\"$fopts\"
	1840	eval lopts=\"$lopts\"
	1841	fi
	1842
	1843
	1844
	1845	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	1846	fopts="$fopts $netcdf_inc $dvr_inc"
	1847	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	1848	ROPTS="$ropts"
[1040]	1849	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb ) && -n $numprocs ]]
[1]	1850	then
	1851	XOPT="-X $numprocs"
	1852	fi
	1853
	1854
	1855
	1856	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	1857	# GRAMM BENOETIGT
	1858	done=false
	1859	while [[ $done = false ]]
	1860	do
	1861	cputime=$cpumax
	1862	if (( $cputime == 0 ))
	1863	then
[246]	1864	if [[ $do_batch = true ]]
	1865	then
	1866	printf "\n +++ cpu-time is undefined"
	1867	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	1868	printf "\n >>> "
	1869	read cputime 1>/dev/null 2>&1
	1870	else
	1871	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	1872	fi
[1]	1873	else
	1874	done=true
	1875	fi
	1876	cpumax=$cputime
	1877	done
	1878
	1879	(( minuten = cputime / 60 ))
	1880	(( sekunden = cputime - minuten * 60 ))
	1881
	1882
	1883	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	1884	if [[ $do_batch = true ]]
	1885	then
	1886	done=false
	1887	while [[ $done = false ]]
	1888	do
	1889	if (( memory == 0 ))
	1890	then
	1891	printf "\n +++ memory demand is undefined"
	1892	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	1893	printf "\n >>> "
	1894	read memory 1>/dev/null 2>&1
	1895	else
	1896	done=true
	1897	fi
	1898	done
	1899	fi
	1900
	1901
	1902	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	1903	if [[ $do_remote = true && -z $remote_username ]]
	1904	then
	1905	while [[ -z $remote_username ]]
	1906	do
	1907	printf "\n +++ username on remote host \"$host\" is undefined"
	1908	printf "\n >>> Please type username:"
	1909	printf "\n >>> "
	1910	read remote_username
	1911	done
	1912	mc="$mc -u$remote_username"
	1913	fi
	1914
[892]	1915	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
	1916	if [[ "$login_init_cmd" != "" ]]
	1917	then
	1918	export init_cmds="${login_init_cmd};"
	1919	fi
[221]	1920
[892]	1921
[493]	1922	# set module load command and export for subjob
	1923	if [[ "$modules" != "" ]]
	1924	then
[678]	1925	if [[ $host = lctit ]]
	1926	then
	1927	export module_calls=". $modules"
	1928	else
	1929	export module_calls="module load ${modules};"
	1930	fi
[493]	1931	fi
	1932
[683]	1933	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
[562]	1934	if [[ $host = lcsgib \|\| $host = lcsgih ]]
[555]	1935	then
	1936	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
	1937	then
[562]	1938	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
[555]	1939	fi
[721]	1940	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
	1941	# then
	1942	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
	1943	# echo "*** module_calls = $module_calls"
	1944	# fi
[555]	1945	fi
[493]	1946
[555]	1947
[221]	1948	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	1949	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	1950	then
[493]	1951	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
	1952	then
	1953	mpilib=mpt
	1954	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
	1955	then
	1956	mpilib=mvapich
[738]	1957	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
	1958	then
	1959	mpilib=impi
[493]	1960	fi
[221]	1961	fi
	1962
	1963
	1964
[1]	1965	###########################################################################
	1966	# HEADER-AUSGABE
	1967	###########################################################################
	1968
	1969
	1970	calltime=$(date)
	1971	printf "\n"
	1972	# [[ $silent = false ]] && clear
	1973	printf "#--------------------------------------------------------------# \n"
	1974	printf "\| $version$calltime \| \n"
	1975	printf "\| \| \n"
	1976	spalte1="called on:"; spalte2=$localhost_realname
	1977	printf "\| $spalte1$spalte2 \| \n"
	1978	if [[ $local_compile = false ]]
	1979	then
	1980	if [[ $do_remote = true ]]
	1981	then
	1982	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	1983	else
	1984	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	1985	fi
	1986	else
	1987	spalte1="compiling test only!"; spalte2=""
	1988	fi
	1989	printf "\| $spalte1$spalte2 \| \n"
	1990	if [[ -n $numprocs ]]
	1991	then
	1992	spalte1="number of PEs:"; spalte2=$numprocs
	1993	printf "\| $spalte1$spalte2 \| \n"
	1994	fi
	1995	if [[ -n $tasks_per_node ]]
	1996	then
	1997	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	1998	printf "\| $spalte1$spalte2 \| \n"
	1999	fi
[759]	2000	if [[ $maximum_parallel_io_streams != $numprocs ]]
	2001	then
	2002	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
	2003	printf "\| $spalte1$spalte2 \| \n"
	2004	fi
[622]	2005	if [[ $use_openmp = true ]]
[1]	2006	then
	2007	spalte1="threads per task:"; spalte2="$threads_per_task"
	2008	printf "\| $spalte1$spalte2 \| \n"
	2009	fi
	2010	printf "\| \| \n"
	2011	if [[ $do_compile = true ]]
	2012	then
[475]	2013	if [[ "$mopts" != "" ]]
	2014	then
[493]	2015	spalte1="make options:"; spalte2=$mopts
[475]	2016	printf "\| $spalte1$spalte2 \| \n"
	2017	zeile=$(echo "$mopts" \| cut -c41-)
	2018	while [[ "$zeile" != "" ]]
	2019	do
	2020	spalte1=""
	2021	spalte2=$zeile
	2022	printf "\| $spalte1$spalte2 \| \n"
	2023	zeile=$(echo "$zeile" \| cut -c41-)
	2024	done
	2025	fi
	2026
[493]	2027	spalte1="cpp directives:"; spalte2=$cpp_options
[1]	2028	printf "\| $spalte1$spalte2 \| \n"
[82]	2029	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2030	while [[ "$zeile" != "" ]]
	2031	do
	2032	spalte1=""
	2033	spalte2=$zeile
	2034	printf "\| $spalte1$spalte2 \| \n"
	2035	zeile=$(echo "$zeile" \| cut -c41-)
	2036	done
	2037
[493]	2038	spalte1="compiler options:"; spalte2="$fopts"
[1]	2039	printf "\| $spalte1$spalte2 \| \n"
[82]	2040	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2041	while [[ "$zeile" != "" ]]
	2042	do
	2043	spalte1=""
	2044	spalte2=$zeile
	2045	printf "\| $spalte1$spalte2 \| \n"
	2046	zeile=$(echo "$zeile" \| cut -c41-)
	2047	done
	2048
[493]	2049	spalte1="linker options:"; spalte2=$lopts
[1]	2050	printf "\| $spalte1$spalte2 \| \n"
[82]	2051	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2052	while [[ "$zeile" != "" ]]
	2053	do
	2054	spalte1=""
	2055	spalte2=$zeile
	2056	printf "\| $spalte1$spalte2 \| \n"
	2057	zeile=$(echo "$zeile" \| cut -c41-)
	2058	done
	2059
[493]	2060	spalte1="modules to be load:"; spalte2=$modules
	2061	printf "\| $spalte1$spalte2 \| \n"
	2062	zeile=$(echo "$modules" \| cut -c41-)
	2063	while [[ "$zeile" != "" ]]
	2064	do
	2065	spalte1=""
	2066	spalte2=$zeile
	2067	printf "\| $spalte1$spalte2 \| \n"
	2068	zeile=$(echo "$zeile" \| cut -c41-)
	2069	done
	2070
[1]	2071	spalte1="main program":; spalte2=$mainprog
	2072	printf "\| $spalte1$spalte2 \| \n"
	2073	else
	2074	spalte1=executable:; spalte2=$executable
	2075	printf "\| $spalte1$spalte2 \| \n"
	2076	fi
	2077	printf "\| \| \n"
	2078	spalte1="base name of files":; spalte2=$fname
	2079	printf "\| $spalte1$spalte2 \| \n"
	2080	if [[ $fname != $afname ]]
	2081	then
	2082	spalte1="base name of input files":; spalte2=$afname
	2083	printf "\| $spalte1$spalte2 \| \n"
	2084	fi
	2085	spalte1="INPUT control list":; spalte2=$input_list
	2086	printf "\| $spalte1$spalte2 \| \n"
	2087	spalte1="OUTPUT control list":; spalte2=$output_list
	2088	printf "\| $spalte1$spalte2 \| \n"
	2089
	2090	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2091	then
	2092	spalte1="memory demand / PE":; spalte2="$memory MB"
	2093	printf "\| $spalte1$spalte2 \| \n"
	2094	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2095	printf "\| $spalte1$spalte2 \| \n"
	2096	fi
	2097
	2098	if [[ $do_compile = true ]]
	2099	then
	2100	printf "\| \| \n"
	2101	printf "\| Files to be compiled: \| \n"
	2102	zeile=$source_list
	2103	while [[ "$zeile" != "" ]]
	2104	do
	2105	spalte3=$zeile
	2106	printf "\| $spalte3 \| \n"
	2107	zeile=$(echo "$zeile" \| cut -c61-)
	2108	done
	2109	fi
	2110	printf "#--------------------------------------------------------------#"
	2111
	2112
	2113
	2114	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2115	if [[ $do_trace = true ]]
	2116	then
	2117	(( i = 0 ))
	2118	while (( i < iin ))
	2119	do
	2120	(( i = i + 1 ))
	2121	if (( i == 1 ))
	2122	then
	2123	printf "\n\n >>> INPUT-file assignments:\n"
	2124	fi
	2125	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2126	done
	2127	(( i = 0 ))
	2128	while (( i < iout ))
	2129	do
	2130	(( i = i + 1 ))
	2131	if (( i == 1 ))
	2132	then
	2133	printf "\n\n >>> OUTPUT-file assignments:\n"
	2134	fi
	2135	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2136	done
	2137	(( i = 0 ))
	2138	while (( i < iic ))
	2139	do
	2140	(( i = i + 1 ))
	2141	if (( i == 1 ))
	2142	then
	2143	printf "\n\n >>> INPUT-commands:\n"
	2144	fi
	2145	printf "\n ${in_command[$i]}"
	2146	done
	2147	(( i = 0 ))
	2148	while (( i < ioc ))
	2149	do
	2150	(( i = i + 1 ))
	2151	if (( i == 1 ))
	2152	then
	2153	printf "\n\n >>> OUTPUT-commands:\n"
	2154	fi
	2155	printf "\n ${out_command[$i]}"
	2156	done
	2157	fi
	2158
	2159
	2160	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2161	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2162	then
	2163	antwort=dummy
	2164	printf "\n\n"
	2165	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2166	do
	2167	printf " >>> everything o.k. (y/n) ? "
	2168	read antwort
	2169	done
	2170	if [[ $antwort = n \|\| $antwort = N ]]
	2171	then
	2172	locat=user_abort; (( iec = 0 )); exit
	2173	fi
	2174	if [[ $do_batch = true ]]
	2175	then
	2176	printf " >>> batch-job will be created and submitted"
	2177	else
	2178	if [[ $local_compile = false ]]
	2179	then
	2180	printf " >>> MRUN will now continue to execute on this machine"
	2181	else
	2182	printf " >>> a test compilation will now be carried out on this machine"
	2183	fi
	2184	fi
	2185	fi
	2186
[807]	2187	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
[841]	2188
	2189	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
	2190	check_depository="${working_directory}/trunk/UTIL"
	2191	check_sources="${working_directory}/tmp_check_namelist_files"
[818]	2192	skip_check=false
[841]	2193
	2194	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
[920]	2195	if [[ ! -f $check_depository/check_namelist_files.tar ]]
[841]	2196	then
[892]	2197	skip_check=true
[920]	2198	reason="run on remote host or parameter file check has not been compiled."
	2199	fi
	2200	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
	2201	then
	2202	skip_check=true
[892]	2203	reason="parameter file check has not been compiled."
	2204	fi
[841]	2205
[892]	2206	#CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
	2207	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
	2208	then
	2209	skip_check=true
	2210	reason="serial run."
[841]	2211	fi
	2212
	2213	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
[892]	2214	if [[ $check_namelist_files == false ]]
[807]	2215	then
[892]	2216	skip_check=true
	2217	reason="-z option set."
[815]	2218	fi
[892]	2219
	2220	if [[ $fromhost != $localhost ]]
[815]	2221	then
[892]	2222	skip_check=true
	2223	reason="submitting host is local host."
	2224	fi
[1]	2225
[892]	2226	if [[ $run_coupled_model == true ]]
	2227	then
	2228	skip_check=true
	2229	reason="coupled run."
	2230	fi
[1]	2231
[892]	2232	if [[ $restart_run == true ]]
	2233	then
	2234	skip_check=true
	2235	reason="restart run."
[807]	2236
[892]	2237	fi
[807]	2238
[892]	2239	#SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
[920]	2240	((last_char = `echo $filename_input \| wc -c` - 1))
	2241	last_char=`echo $filename_input \|cut -c$last_char`
[892]	2242	if [[ "$last_char" == "f" ]]
	2243	then
	2244	skip_check=true
[1069]	2245	reason="restart run."
[892]	2246	fi
[807]	2247
[892]	2248	if [[ $skip_check == false ]]
	2249	then
[807]	2250
[892]	2251	tmp_check=${working_directory}/tmp_check
[841]	2252
[818]	2253	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
	2254	# NOT NECESSARILY REQUIRED
	2255	line=""
	2256	found=false
[892]	2257	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
[818]	2258	while read line1
	2259	do
	2260	line="$line1"
	2261	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2262	then
	2263	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
	2264	found=true
	2265	fi
	2266	done < $tmp_check
[807]	2267
[818]	2268	if [[ $found = false ]]
	2269	then
	2270	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
	2271	fi
	2272
[807]	2273	rm -rf ${working_directory}/tmp_check
	2274
	2275	# CHECK IF THE A P3DF FILE MUST BE CHECKED
	2276	for item in $input_list
	2277	do
[892]	2278	if [[ "$item" == "restart" ]]
[807]	2279	then
	2280	check_restart=1
	2281	else
	2282	check_restart=0
	2283	fi
	2284	done
	2285
	2286	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
[920]	2287	if [[ (! -f $filename_input) && ( "$filename_input" != "") ]]
[807]	2288	then
[920]	2289	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
[807]	2290	locat=check_namelist; exit
	2291	fi
	2292
	2293	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
	2294	if [[ $check_restart == 1 ]]
	2295	then
[892]	2296
	2297
	2298
[920]	2299	filenamef="${filename_input}f"
[892]	2300	if [[ ! -f $filenamef ]]
[807]	2301	then
[892]	2302	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
[807]	2303	check_restart=0
	2304	answer=dummy
	2305	printf "\n\n"
	2306
[818]	2307	if [[ $silent == false ]]
[807]	2308	then
[818]	2309	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2310	do
	2311	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2312	read answer
	2313	done
	2314	if [[ $answer = a \|\| $answer = A ]]
	2315	then
	2316	printf "\n +++ Aborting...."
	2317	locat=normal; exit
	2318	fi
[807]	2319	fi
	2320	else
	2321	check_restart=1
	2322	fi
	2323	fi
	2324
	2325	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
	2326	mkdir $check_sources
	2327	cd $check_sources
	2328
[892]	2329
[807]	2330	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
[892]	2331	if [[ -d $add_source_path ]]
[807]	2332	then
	2333	printf "\n\n *** copying files from $check_depository"
	2334	cp $check_depository/check_namelist_files.tar ./
	2335
	2336	printf "\n\n *** untar of makefile and source files in $check_sources"
	2337	tar -xf check_namelist_files.tar > /dev/null 2>&1
	2338
	2339	printf "\n\n *** adding user code."
[892]	2340	cp $add_source_path/* ./
[807]	2341	touch check_namelist_files.f90
	2342
	2343	# GET COMPILER OPTIONS AND PERFORM MAKE
	2344	printf "\n\n *** compiling code if necessary...\n"
[1045]	2345
	2346	# workaround for batch jobs on local machine (lcxe6)
	2347	if [[ $do_batch == true && $do_remote == false ]]
	2348	then
	2349	eval $init_cmds
	2350	fi
	2351
[995]	2352	copts_check="-cpp -D__parallel -D__check"
[807]	2353	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
	2354
	2355	# GET MAKE OUTPUT
	2356	if [[ $? != 0 ]]
	2357	then
[815]	2358	printf "\n +++ error during make."
	2359	answer=dummy
	2360	printf "\n\n"
[818]	2361	if [[ $silent == false ]]
[815]	2362	then
[818]	2363	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2364	do
	2365	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2366	read answer
	2367	done
	2368	if [[ $answer = a \|\| $answer = A ]]
	2369	then
	2370	printf "\n +++ Aborting..."
	2371	rm -rf $check_sources
	2372	locat=normal; exit
	2373	else
	2374	skip_check=true
	2375	fi
[815]	2376	else
	2377	skip_check=true
	2378	fi
[807]	2379	fi
	2380	else
	2381	cp $PALM_BIN/check_namelist_files.x ./
	2382	fi
	2383
[920]	2384	cp $filename_input ./PARIN
[807]	2385	if [[ $check_restart == 1 ]]
	2386	then
[892]	2387	cp $filenamef ./PARINF
[807]	2388	fi
	2389
[892]	2390	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
[818]	2391	then
	2392	printf "\n *** adding topography data"
[892]	2393	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
[818]	2394
	2395	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
	2396	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
	2397	# WHICH REQUIRE SUFFICIENT MEMORY
	2398	ulimit -s unlimited
	2399	fi
	2400
[807]	2401	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
	2402	cat > ENVPAR << %%END%%
[823]	2403	&envpar run_identifier = '$fname', host = '$host',
[807]	2404	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2405	maximum_parallel_io_streams = $maximum_parallel_io_streams,
	2406	maximum_cpu_time_allowed = ${cpumax}.,
	2407	revision = '$global_revision',
	2408	local_dvrserver_running = $local_dvrserver_running /
	2409
	2410	%%END%%
	2411
	2412	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
[818]	2413	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
[807]	2414	printf "\n +++ WARNING: check_namelist_files.x not found."
	2415	answer=dummy
	2416	printf "\n\n"
[818]	2417
	2418	if [[ $silent == false ]]
[807]	2419	then
[818]	2420	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2421	do
	2422	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2423	read answer
	2424	done
	2425	if [[ $answer = a \|\| $answer = A ]]
	2426	then
	2427	printf "\n +++ Aborting..."
	2428	rm -rf $check_sources
	2429	locat=normal; exit
	2430	else
[1069]	2431	printf "\n *** skipping parameter file check."
[818]	2432
	2433	fi
	2434	fi
	2435
[815]	2436	elif [[ $skip_check == false ]]
	2437	then
[807]	2438	# STARTING THE PARAMETER FILE CHECK
	2439	printf "\n\n *** starting parameter file check..."
	2440
	2441	# CHECKING THE P3D FILE
[920]	2442	printf "\n\n (1) checking $filename_input"
[931]	2443	echo "$numprocs 0 0" > VARIN
[807]	2444	errors=`./check_namelist_files.x < VARIN 2>&1`
	2445
	2446	check_error=false
	2447	if [[ "$errors" == "" ]]
	2448	then
	2449	printf " --> o.k."
	2450	else
	2451	printf " --> failed."
	2452	check_error=true
	2453	printf "\n\n $errors"
	2454	fi
	2455
	2456	# CHECKING THE PD3F FILE IF NECESSARY
	2457	if [[ $check_restart == 1 && $check_error == false ]]
	2458	then
[892]	2459	printf "\n\n (2) checking $filenamef"
[807]	2460
	2461	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
	2462	found=false
	2463	cat PARINF\|while read line
	2464	do
	2465	line=$(echo $line\|sed 's/ //g')
	2466	if [[ $line == "&inipar" ]]
	2467	then
	2468	start_search=true
	2469	fi
	2470
	2471	if [[ $start_search == true ]]
	2472	then
	2473	if [[ $line == "initializing_actions='read_restart_data'" ]]
	2474	then
	2475	found=true
	2476	break
	2477	fi
	2478	fi
	2479
	2480	if [[ $line == "/" ]]
	2481	then
	2482	start_search=false
	2483	fi
	2484
	2485	done
	2486
	2487	if [[ $found = false ]]
	2488	then
	2489	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
	2490	printf "\n in &inipar list in $fname$p3df_suffix."
	2491	rm -rf $check_sources
	2492	locat=check_namelist; exit
	2493	fi
	2494
[931]	2495	# READ max_user_pr FROM FILES
	2496	if [[ -f parin_for_check ]]
	2497	then
	2498	read max_pr_user < parin_for_check
	2499	else
	2500	max_user_pr=0
	2501	fi
	2502
	2503	echo "$numprocs 1 $max_pr_user" > VARIN
[807]	2504	errors=`./check_namelist_files.x < VARIN 2>&1`
	2505
	2506	if [[ "$errors" == "" ]]
	2507	then
	2508	printf " --> o.k."
	2509	else
	2510	printf " --> failed."
	2511	check_error=true
	2512	printf "\n\n $errors"
	2513	fi
	2514	fi
	2515
	2516	# REPORT ERRORS AND CONTINUE/EXIT
	2517	if [[ $check_error == true ]]
	2518	then
	2519	printf "\n +++ errors found in the parameter file!\n"
	2520	answer=dummy
	2521	printf "\n\n"
	2522
	2523	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2524	do
	2525	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2526	read answer
	2527	done
	2528
	2529	if [[ $answer = a \|\| $answer = A ]]
	2530	then
	2531	printf "\n +++ Aborting..."
	2532	rm -rf $check_sources
	2533	locat=normal; exit
	2534	fi
	2535	else
	2536	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
	2537	fi
	2538	rm -rf $check_sources
	2539	fi
	2540	else
[892]	2541	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
[807]	2542	fi
	2543
[818]	2544	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
	2545	rm -rf $check_sources
[807]	2546	cd $working_directory
	2547
[892]	2548
[807]	2549	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2550	# CHENDE AKTIONEN DURCHGEFUEHRT
[1]	2551	if [[ $do_batch = false ]]
	2552	then
	2553
	2554
	2555	# TEMPORAEREN KATALOG ERZEUGEN
	2556	mkdir -p $TEMPDIR
	2557	chmod go+rx $TEMPDIR
	2558	tmpcreate=true
	2559
[493]	2560	# set striping on lustre file system
	2561	# if [[ $localhost = lcsgih ]]
	2562	# then
	2563	# lfs setstripe -s 8192k -c 16 $TEMPDIR
	2564	# lfs getstripe $TEMPDIR
	2565	# fi
[1]	2566
[493]	2567
[1]	2568	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2569	# TEMPORAERES VERZEICHNIS KOPIEREN
	2570	if [[ $do_compile = true ]]
	2571	then
	2572
	2573	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2574	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2575	if [[ $localhost = nech ]]
	2576	then
	2577	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2578	if mkdir -p $TEMPDIR_COMPILE
	2579	then
	2580	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2581	printf "\n is generated as temporary directory for cross compiling\n"
	2582	else
	2583	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2584	printf "\n needed for cross compilation failed"
	2585	locat=compile
	2586	exit
	2587	fi
	2588	else
	2589	TEMPDIR_COMPILE=$TEMPDIR
	2590	fi
	2591
	2592
[82]	2593	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2594	line=""
	2595	grep "%depository_path" $config_file > tmp_mrun
	2596	while read line
	2597	do
	2598	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2599	then
	2600	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2601	then
[82]	2602	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2603	fi
[82]	2604	fi
	2605	done < tmp_mrun
[1]	2606
[82]	2607	line=""
	2608	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2609	while read line
	2610	do
	2611	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2612	then
[211]	2613	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2614	then
	2615	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2616	fi
[1]	2617	fi
[82]	2618	done < tmp_mrun
[1]	2619
[82]	2620	if [[ "$local_depository_path" = "" ]]
	2621	then
	2622	if [[ "$global_depository_path" != "" ]]
[1]	2623	then
[82]	2624	local_depository_path=$global_depository_path
[1]	2625	else
[82]	2626	printf "\n\n +++ no depository path found in configuration file"
	2627	printf "\n for local host \"$localhost\" "
	2628	printf "\n please set \"\%depository_path\" in configuration file\n"
	2629	locat=config_file; exit
[1]	2630	fi
[82]	2631	fi
	2632	eval local_depository_path=$local_depository_path
[215]	2633	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2634	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2635
[215]	2636
[82]	2637	basename=`print $mainprog \| cut -f1 -d"."`
	2638	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2639	if [[ ! -f $make_depository ]]
	2640	then
	2641	printf "\n"
	2642	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2643	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2644	else
	2645	cp $make_depository $TEMPDIR_COMPILE
[1]	2646	cd $TEMPDIR_COMPILE
[82]	2647	tar -xf $make_depository > /dev/null 2>&1
[1]	2648	cd - > /dev/null
	2649	fi
[82]	2650
	2651	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2652
[1]	2653	else
[475]	2654
[1]	2655	cp $executable ${TEMPDIR}/a.out
[475]	2656
[1]	2657	fi
	2658
	2659
	2660	# WECHSEL IN TEMPORAEREN KATALOG
[475]	2661	cd $TEMPDIR
[1]	2662	printf "\n *** changed to temporary directory: $TEMPDIR"
	2663
	2664
	2665	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2666	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2667	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2668	# ERMITTELN
	2669	(( i = 0 ))
	2670	while (( i < iout ))
	2671	do
	2672	(( i = i + 1 ))
	2673	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2674	then
	2675	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2676	else
	2677	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2678	fi
	2679	done
	2680
	2681
	2682	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2683	if [[ $do_compile = true ]]
	2684	then
	2685
	2686
	2687	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2688	printf "\n\n\n *** compilation starts \n$striche\n"
	2689	printf " *** compilation with make using following options:\n"
[211]	2690	printf " make depository: $make_depository"
[475]	2691	if [[ "$mopts" != "" ]]
	2692	then
	2693	printf " make options: $mopts\n"
	2694	fi
[82]	2695	printf " compilername: $compiler_name\n"
[475]	2696	printf " compiler options: $fopts\n"
[493]	2697	printf " preprocessor directives: $cpp_options \n"
	2698	printf " linker options: $lopts \n"
	2699	if [[ "$modules" != "" ]]
	2700	then
	2701	printf " modules to be load: $modules \n"
	2702	fi
[82]	2703	printf " source code files: $source_list \n"
	2704
	2705	if [[ $localhost = nech ]]
[1]	2706	then
[892]	2707	# init_cmds was ". /SX/opt/etc/initsx.sh;"
	2708	ssh 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[82]	2709	cp $TEMPDIR_COMPILE/a.out .
	2710	[[ $? != 0 ]] && compile_error=true
	2711	rm -rf $TEMPDIR_COMPILE
[312]	2712	elif [[ $localhost = ibmh ]]
	2713	then
[325]	2714	printf " compiler is called via ssh on \"plogin1\" \n"
[892]	2715	ssh plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[312]	2716	[[ ! -f a.out ]] && compile_error=true
	2717	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[197]	2718	elif [[ $localhost = lcsgib ]]
	2719	then
[540]	2720	printf " compiler is called via ssh on \"bicegate0\" \n"
[892]	2721	ssh bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2722	[[ ! -f a.out ]] && compile_error=true
	2723	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2724	elif [[ $localhost = lcsgih ]]
	2725	then
[738]	2726	printf " compiler is called via ssh on \"hicegate0\" \n"
[892]	2727	ssh hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2728	[[ ! -f a.out ]] && compile_error=true
	2729	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[755]	2730	elif [[ $localhost = lcflow ]]
	2731	then
	2732	printf " compiler is called via ssh on \"flow\" \n"
[892]	2733	ssh flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[755]	2734	[[ ! -f a.out ]] && compile_error=true
	2735	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2736	else
[920]	2737	[[ "$init_cmds" != "" ]] && eval $init_cmds
[493]	2738	[[ "$module_calls" != "" ]] && eval $module_calls
[475]	2739	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
[807]	2740
[82]	2741	fi
[1]	2742
	2743	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2744	then
	2745	printf "\n +++ error occured while compiling or linking"
	2746	locat=compile
[181]	2747
[182]	2748	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2749	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2750	# then
[181]	2751	exit
[197]	2752	# else
	2753	# locat=normal
	2754	# fi
[1]	2755	else
	2756	printf "$striche\n *** compilation finished \n"
	2757	fi
	2758	fi
	2759
	2760
	2761	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2762	if [[ $local_compile = true ]]
	2763	then
	2764	cd $HOME
	2765	rm -rf $TEMPDIR
	2766	locat=local_compile; exit
	2767	fi
	2768
	2769
	2770	# BEREITSTELLEN DER INPUT-DATEIEN
	2771	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2772	(( i = 0 ))
	2773	while (( i < iin ))
	2774	do
	2775	(( i = i + 1 ))
	2776	if (( i == 1 ))
	2777	then
	2778	printf "\n\n *** providing INPUT-files:\n$striche"
	2779	fi
	2780
	2781
	2782	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2783	if [[ "${transin[$i]}" = unavailable ]]
	2784	then
	2785	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2786	then
	2787	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2788	printf "\n is not available!"
	2789	else
	2790	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2791	printf "\n is not available!"
	2792	fi
	2793	continue
	2794	fi
	2795
	2796	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2797	files_for_pes=false; datentyp=file
	2798	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2799	then
	2800	files_for_pes=true; datentyp=directory
	2801	actionin[$i]=""
	2802	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2803	then
	2804	actionin[$i]=""
	2805	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2806	then
	2807	files_for_pes=true; datentyp=directory
	2808	actionin[$i]="ar"
	2809	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2810	then
	2811	actionin[$i]="ar"
	2812	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2813	then
	2814	files_for_pes=true; datentyp=directory
	2815	actionin[$i]="fl"
	2816	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2817	then
	2818	actionin[$i]="fl"
	2819	fi
	2820
	2821	if [[ $files_for_pes = true ]]
	2822	then
	2823	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2824	else
	2825	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2826	fi
	2827
	2828	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2829	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2830	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2831	# SERVER ZU HOLEN
	2832	if [[ "${actionin[$i]}" = fl ]]
	2833	then
	2834	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2835	if [[ $files_for_pes = false ]]
	2836	then
	2837	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2838	then
	2839	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2840	got_tmp[$i]=true
	2841	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2842	then
	2843	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2844	printf "\n *** trying to use backup copy in \"$WORK\" "
	2845	cp $WORK/${frelin[$i]} ${localin[$i]}
	2846	else
	2847	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2848	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2849	printf "\n *** trying to get copy from archive"
	2850	actionin[$i]=ar
	2851	fi
	2852	else
	2853	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2854	then
	2855	mkdir ${localin[$i]}
[149]	2856	cd $tmp_data_catalog/${frelin[$i]}
	2857	for file in $(ls *)
	2858	do
	2859	ln $file $TEMPDIR/${localin[$i]}
	2860	done
	2861	cd $TEMPDIR
[1]	2862	got_tmp[$i]=true
	2863	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2864	then
	2865	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2866	printf "\n *** trying to use backup copy in \"$WORK\" "
	2867	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2868	else
	2869	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2870	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2871	printf "\n *** trying to get copy from archive"
	2872	actionin[$i]=ar
	2873	fi
	2874	fi
	2875	fi
	2876
	2877
	2878	# DATEI LIEGT AUF ARCHIV-SERVER
	2879	if [[ "${actionin[$i]}" = ar ]]
	2880	then
	2881
	2882	if [[ $files_for_pes = false ]]
	2883	then
	2884	printf "\n file will be restored from archive-system ($archive_system)!"
	2885	else
	2886	printf "\n directory will be restored from archive-system ($archive_system)!"
	2887	fi
	2888
	2889	file_restored=false
	2890
	2891	if [[ $archive_system = asterix ]]
	2892	then
	2893	do_stagein=true
	2894	(( stagein_anz = 0 ))
	2895	while [[ $do_stagein = true ]]
	2896	do
	2897	if [[ $files_for_pes = false ]]
	2898	then
	2899	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2900	else
	2901	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2902	fi
	2903	cat STAGEIN_OUTPUT
	2904	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2905	then
	2906	file_restored=true
	2907	do_stagein=false
	2908	else
	2909	(( stagein_anz = stagein_anz + 1 ))
	2910	if (( stagein_anz == 10 ))
	2911	then
	2912	printf "\n +++ stagein stoped after 10 tries"
	2913	locat=stage
	2914	exit
	2915	fi
	2916	printf "\n +++ restoring from archive failed, trying again:"
	2917	sleep 900
	2918	fi
	2919	done
	2920	elif [[ $archive_system = DMF ]]
	2921	then
	2922	if [[ $files_for_pes = false ]]
	2923	then
	2924	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	2925	locat=DMF
	2926	exit
	2927	else
	2928	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	2929	cp -r $ARCHIVE/${frelin[$i]} $PWD
	2930	file_restored=true
	2931	fi
	2932	elif [[ $archive_system = tivoli ]]
	2933	then
	2934	if [[ $files_for_pes = false ]]
	2935	then
[399]	2936	if [[ $localhost = lcsgih ]]
[1]	2937	then
[399]	2938	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2939	else
[399]	2940	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2941	fi
	2942	else
	2943	(( inode = 0 ))
	2944	while (( inode < nodes ))
	2945	do
[399]	2946	if [[ $localhost = lcsgih ]]
[1]	2947	then
[399]	2948	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2949	else
[399]	2950	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2951	fi
	2952	(( inode = inode + 1 ))
	2953	done
	2954	fi
	2955	file_restored=true
	2956	elif [[ $archive_system = ut ]]
	2957	then
	2958	if [[ $files_for_pes = false ]]
	2959	then
	2960	cp $UT/${frelin[$i]} .
	2961	else
	2962	(( inode = 0 ))
	2963	while (( inode < nodes ))
	2964	do
	2965	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	2966	(( inode = inode + 1 ))
	2967	done
	2968	fi
	2969	file_restored=true
	2970	else
	2971	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	2972	locat=rearchive
	2973	exit
	2974	fi
	2975
	2976	if [[ $file_restored = true ]]
	2977	then
	2978
	2979	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	2980	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	2981	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	2982	if [[ $files_for_pes = false ]]
	2983	then
	2984	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	2985	else
	2986	mkdir $tmp_data_catalog/${frelin[$i]}
	2987	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	2988	fi
	2989	got_tmp[$i]=true
	2990
	2991	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	2992	mv ${frelin[$i]} ${localin[$i]}
	2993
	2994	fi
	2995	fi
	2996
	2997
	2998	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	2999	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	3000	then
	3001
	3002	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	3003	then
	3004
	3005	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	3006	printf "\n file will be provided for $numprocs processors"
	3007	mkdir ${localin[$i]}
	3008	ival=$numprocs
	3009	(( ii = 0 ))
	3010	while (( ii <= ival-1 ))
	3011	do
	3012	if (( ii < 10 ))
	3013	then
	3014	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	3015	elif (( ii < 100 ))
	3016	then
	3017	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	3018	elif (( ii < 1000 ))
	3019	then
	3020	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	3021	else
	3022	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	3023	fi
	3024	(( ii = ii + 1 ))
	3025	done
	3026
	3027	else
	3028
	3029	if [[ $files_for_pes = true ]]
	3030	then
	3031
	3032	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	3033	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	3034	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	3035	# PER MOVE UMBENANNT WERDEN
	3036	printf "\n providing $numprocs files for the respective processors"
	3037	mkdir ${localin[$i]}
[183]	3038	if [[ $link_local_input = true ]]
	3039	then
	3040	printf " using ln -f\n"
	3041	cd ${absnamein[$i]}
	3042	for file in $(ls *)
	3043	do
	3044	ln -f $file ${localin[$i]}
	3045	done
	3046	cd $TEMPDIR
	3047	fi
	3048	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	3049	if [[ ! -f "${localin[$i]}/_0000" ]]
	3050	then
	3051	if [[ $link_local_input = true ]]
	3052	then
	3053	printf " ln failed for .../_0000, using cp...\n"
	3054	fi
	3055	cp -r ${absnamein[$i]}/* ${localin[$i]}
	3056	fi
[1]	3057
	3058	else
	3059	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	3060	if [[ $link_local_input = true ]]
	3061	then
	3062	printf " using ln -f\n"
	3063	ln -f ${absnamein[$i]} ${localin[$i]}
	3064	fi
	3065	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	3066	if [[ ! -f "${localin[$i]}" ]]
	3067	then
	3068	if [[ $link_local_input = true ]]
	3069	then
	3070	printf " ln failed, using cp...\n"
	3071	fi
	3072	cp ${absnamein[$i]} ${localin[$i]}
	3073	fi
[1]	3074	fi
	3075	fi
	3076	fi
	3077
	3078	done
	3079	if (( i != 0 ))
	3080	then
	3081	printf "\n$striche\n *** all INPUT-files provided \n"
	3082	fi
	3083
	3084
	3085	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	3086	(( i = 0 ))
	3087	while (( i < iic ))
	3088	do
	3089	(( i = i + 1 ))
	3090	if (( i == 1 ))
	3091	then
	3092	printf "\n\n *** execution of INPUT-commands:\n$striche"
	3093	fi
	3094	printf "\n >>> ${in_command[$i]}"
	3095	eval ${in_command[$i]}
	3096	if (( i == iic ))
	3097	then
	3098	printf "\n$striche\n"
	3099	fi
	3100	done
	3101
	3102
	3103	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	3104	cpurest=${cpumax}.
	3105
	3106
[260]	3107	# START DVR STREAMING SERVER
	3108	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3109	then
	3110	if [[ "$dvr_server" != "" ]]
	3111	then
	3112
	3113	printf "\n\n *** preparing the dvr streaming server configuration file"
	3114
	3115	# Check, if a dvr server is already running
	3116	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	3117	if [[ "$running_dvrserver_id" != "" ]]
	3118	then
	3119
[261]	3120	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	3121	printf "\n This server is used instead starting a new one!"
[261]	3122	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	3123
	3124	else
	3125
	3126	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	3127	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	3128	then
	3129	cp ${PALM_BIN}/.dvrserver.config .
	3130
	3131	# Entering the BASEDIR, UID and GID into this file
	3132	user_id=`id -u`
	3133	group_id=`id -g`
	3134	# & is needed as seperator, because TEMPDIR contains /
	3135	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	3136	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	3137	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	3138	mv .dvrserver.3 .dvrserver.config
	3139	rm .dvrserver.1 .dvrserver.2
	3140
	3141	# Start dvr server in background, get his id and print on terminal
	3142	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	3143	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	3144	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	3145	local_dvrserver_running=.TRUE.
	3146	else
	3147	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	3148	printf "\n \"$PALM_BIN\" "
	3149	locat=dvr
	3150	exit
	3151	fi
	3152
	3153	fi
	3154
	3155	else
	3156	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	3157	fi
	3158	fi
	3159
	3160
	3161	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	3162	# LESEN VON PALM)
	3163	cat > ENVPAR << %%END%%
	3164	&envpar run_identifier = '$fname', host = '$localhost',
	3165	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
[759]	3166	maximum_parallel_io_streams = $maximum_parallel_io_streams,
[260]	3167	maximum_cpu_time_allowed = ${cpumax}.,
	3168	revision = '$global_revision',
	3169	local_dvrserver_running = $local_dvrserver_running /
	3170
	3171	%%END%%
	3172
	3173
[1]	3174	# PROGRAMMSTART
	3175	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	3176	PATH=$PATH:$TEMPDIR
	3177
[359]	3178	# MPI debug option (argument checking, slows down execution due to increased latency)
	3179	if [[ "$mpi_debug" = true ]]
	3180	then
	3181	export MPI_CHECK_ARGS=1
	3182	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	3183	fi
	3184
[693]	3185	if [[ "$totalview" = true ]]
	3186	then
	3187	printf "\n *** totalview debugger will be used"
	3188	tv_opt="-tv"
	3189	else
	3190	tv_opt=""
	3191	fi
	3192
[1]	3193	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	3194	then
	3195	if [[ "$ENVIRONMENT" = BATCH ]]
	3196	then
[211]	3197	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	3198	then
	3199	printf "\n +++ debug is allowed in interactive mode only"
	3200	locat=debug
	3201	exit
	3202	fi
[1]	3203	fi
[5]	3204	if [[ $localhost = decalpha ]]
[1]	3205	then
	3206	dxladebug a.out
[622]	3207	elif [[ $localhost = ibmh ]]
[1]	3208	then
	3209
	3210	# SETUP THE IBM MPI ENVIRONMENT
	3211	export MP_SHARED_MEMORY=yes
	3212	export AIXTHREADS_SCOPE=S
	3213	export OMP_NUM_THREADS=$threads_per_task
	3214	export AUTHSTATE=files
	3215	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3216
	3217	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	3218	export MP_ADAPTER_USE=shared
	3219	export MP_CPU_USE=multiple
	3220	export MP_TIMEOUT=1200
	3221
	3222	unset MP_TASK_AFFINITY
	3223
	3224	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	3225	#(( ii = 1 ))
	3226	#while (( ii <= $numprocs ))
	3227	#do
	3228	# echo $localhost_realname >> hostfile
	3229	# (( ii = ii + 1 ))
	3230	#done
	3231	#export MP_HOSTFILE=hostfile
	3232
	3233	if [[ "$LOADLBATCH" = yes ]]
	3234	then
	3235	totalview poe a.out $ROPTS
	3236	else
	3237	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3238	export TVDSVRLAUNCHCMD=ssh
	3239	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3240	fi
[211]	3241	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	3242	then
	3243	# CURRENTLY NO DEBUGGER ON LCSGI
	3244	if [[ $run_coupled_model = true ]]
	3245	then
	3246	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	3247	locat=debug
	3248	exit
[223]	3249	else
	3250	echo "no_coupling" > runfile_atmos
[211]	3251	fi
	3252	(( ii = $numprocs / $threads_per_task ))
	3253	export OMP_NUM_THREADS=$threads_per_task
	3254	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3255	if [[ $threads_per_task != 1 ]]
	3256	then
	3257	printf "\n threads per task: $threads_per_task"
	3258	fi
	3259	printf "\n\n"
[223]	3260	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3261	then
	3262	# export MPI_LAUNCH_TIMEOUT=360
	3263	if [[ "$totalview" = true ]]
	3264	then
	3265	printf "\n running totalview debugger"
[693]	3266	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
[223]	3267	else
	3268	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3269	fi
	3270	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3271	then
	3272	# ulimit -s 300000 # A too large stack size causes problems
	3273	# export MV2_NUM_PORTS=2
	3274	# export MV2_CPU_MAPPING=0:1:2:3
[362]	3275	if [[ "$totalview" = true ]]
	3276	then
	3277	printf "\n running totalview debugger"
[693]	3278	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
[362]	3279	else
	3280	mpiexec ./a.out $ROPTS < runfile_atmos
	3281	fi
[223]	3282	fi
[1]	3283	else
	3284	printf "\n +++ no debug available on \"$localhost\" "
	3285	printf "\n or not implemented in mrun so far"
	3286	locat=debug
	3287	exit
	3288	fi
[622]	3289
	3290	# end debug mode
[1]	3291	else
[622]	3292
	3293	# normal execution
[1]	3294	if [[ -n $numprocs ]]
	3295	then
	3296	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	3297	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	3298	then
	3299	# SETUP THE IBM MPI ENVIRONMENT
[693]	3300	if [[ $host != ibmh && $host != ibmkisti ]]
[312]	3301	then
	3302	export MP_SHARED_MEMORY=yes
	3303	export AIXTHREAD_SCOPE=S
	3304	export OMP_NUM_THREADS=$threads_per_task
	3305	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	3306	export AUTHSTATE=files
	3307	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3308	# export MP_PRINTENV=yes
[1]	3309
[312]	3310	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	3311	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	3312	export MP_WAIT_MODE=poll
	3313	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	3314	fi
[693]	3315
	3316	if [[ $host = ibmkisti ]]
	3317	then
	3318	export LANG=en_US
	3319	export MP_SHARED_MEMORY=yes
[696]	3320	if [[ $threads_per_task = 1 ]]
	3321	then
	3322	export MP_SINGLE_THREAD=yes
	3323	export MEMORY_AFFINITY=MCM
	3324	else
	3325	export OMP_NUM_THREADS=$threads_per_task
	3326	fi
[693]	3327	fi
	3328
[1]	3329	if [[ "$LOADLBATCH" = yes ]]
	3330	then
	3331	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	3332	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3333	then
[102]	3334	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3335	else
[343]	3336	if [[ $run_coupled_model = false ]]
	3337	then
	3338	if [[ "$ocean_file_appendix" = true ]]
	3339	then
	3340	echo "precursor_ocean" > runfile_atmos
	3341	else
	3342	echo "precursor_atmos" > runfile_atmos
	3343	fi
	3344	else
	3345	(( iia = $numprocs_atmos / $threads_per_task ))
	3346	(( iio = $numprocs_ocean / $threads_per_task ))
	3347	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3348	printf "\n using $coupled_mode coupling"
	3349	printf "\n\n"
	3350	echo "coupled_run $iia $iio" > runfile_atmos
	3351	fi
	3352	poe ./a.out $ROPTS < runfile_atmos
[1]	3353	fi
	3354	else
[622]	3355	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
[1]	3356	then
[102]	3357	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[693]	3358	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
[1]	3359	then
	3360	if [[ -f $hostfile ]]
	3361	then
	3362	cp $hostfile hostfile
	3363	else
	3364	(( ii = 1 ))
	3365	while (( ii <= $numprocs ))
	3366	do
	3367	echo $localhost_realname >> hostfile
	3368	(( ii = ii + 1 ))
	3369	done
	3370	fi
	3371	export MP_HOSTFILE=hostfile
[331]	3372	if [[ $run_coupled_model = false ]]
	3373	then
	3374	if [[ "$ocean_file_appendix" = true ]]
	3375	then
	3376	echo "precursor_ocean" > runfile_atmos
	3377	else
	3378	echo "precursor_atmos" > runfile_atmos
	3379	fi
	3380	else
	3381	(( iia = $numprocs_atmos / $threads_per_task ))
	3382	(( iio = $numprocs_ocean / $threads_per_task ))
	3383	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3384	printf "\n using $coupled_mode coupling"
	3385	printf "\n\n"
	3386	echo "coupled_run $iia $iio" > runfile_atmos
	3387	fi
[622]	3388	if [[ $localhost = ibmy ]]
	3389	then
	3390	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3391	else
	3392	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
	3393	fi
[331]	3394
[1]	3395	else
	3396	if [[ "$host_file" = "" ]]
	3397	then
	3398	printf "\n +++ no hostfile given in configuration file"
	3399	locat=config_file
	3400	exit
	3401	else
	3402	eval host_file=$host_file
	3403	fi
	3404	export MP_HOSTFILE=$host_file
[102]	3405	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3406	fi
	3407	fi
[251]	3408	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3409	then
	3410	(( ii = nodes ))
	3411	if [[ $ii = 1 ]]
	3412	then
	3413	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3414	export MPIPROGINF=YES
[61]	3415	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3416	echo "*** execution on single node with mpirun"
[102]	3417	mpirun -np $numprocs ./a.out $ROPTS
[1]	3418	else
	3419	(( i = 0 ))
	3420	while (( i < ii ))
	3421	do
	3422	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3423	(( i = i + 1 ))
	3424	done
	3425
	3426	echo "#!/bin/sh" > mpi_exec_shell
	3427	echo " " >> mpi_exec_shell
	3428	echo "set -u" >> mpi_exec_shell
	3429	echo "F_ERRCNT=0" >> mpi_exec_shell
	3430	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3431	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3432	echo "cpurest=$cpurest" >> mpi_exec_shell
	3433	echo "fname=$fname" >> mpi_exec_shell
	3434	echo "localhost=$localhost" >> mpi_exec_shell
	3435	echo "return_addres=$return_addres" >> mpi_exec_shell
	3436	echo "return_username=$return_username" >> mpi_exec_shell
	3437	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3438	echo "write_binary=$write_binary" >> mpi_exec_shell
	3439	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3440	echo " " >> mpi_exec_shell
	3441	echo "export F_ERRCNT" >> mpi_exec_shell
	3442	echo "export MPIPROGINV" >> mpi_exec_shell
	3443	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3444	echo "export cpurest" >> mpi_exec_shell
	3445	echo "export fname" >> mpi_exec_shell
	3446	echo "export localhost" >> mpi_exec_shell
	3447	echo "export return_addres" >> mpi_exec_shell
	3448	echo "export return_username" >> mpi_exec_shell
	3449	echo "export tasks_per_node" >> mpi_exec_shell
	3450	echo "export write_binary" >> mpi_exec_shell
	3451	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3452	echo " " >> mpi_exec_shell
[102]	3453	echo "exec ./a.out" >> mpi_exec_shell
[1]	3454
	3455	chmod u+x mpi_exec_shell
	3456	export MPIPROGINF=YES
	3457	mpirun -f multinode_config &
	3458	wait
	3459
	3460	fi
[440]	3461	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
[1]	3462	then
	3463
	3464	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3465	# DOES NOT EXIST
[179]	3466	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	3467	then
[179]	3468	if [[ -f $hostfile ]]
	3469	then
	3470	cp $hostfile hostfile
[746]	3471	(( ii = $numprocs / $threads_per_task ))
[179]	3472	else
	3473	(( ii = 1 ))
	3474	while (( ii <= $numprocs / $threads_per_task ))
	3475	do
	3476	echo $localhost_realname >> hostfile
	3477	(( ii = ii + 1 ))
	3478	done
	3479	fi
	3480	eval zeile=\"`head -n $ii hostfile`\"
	3481	printf "\n *** running on: $zeile"
[1]	3482	fi
[179]	3483
[1]	3484	(( ii = $numprocs / $threads_per_task ))
	3485	export OMP_NUM_THREADS=$threads_per_task
[696]	3486	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3487	if [[ $threads_per_task != 1 ]]
	3488	then
[405]	3489	# increase stack size to unlimited, because large runs
	3490	# may abort otherwise
	3491	ulimit -Ss unlimited
	3492	printf "\n threads per task: $threads_per_task stacksize: unlimited"
[1]	3493	fi
[102]	3494	if [[ $run_coupled_model = false ]]
[1]	3495	then
[291]	3496	if [[ "$ocean_file_appendix" = true ]]
	3497	then
	3498	echo "precursor_ocean" > runfile_atmos
	3499	else
	3500	echo "precursor_atmos" > runfile_atmos
	3501	fi
[102]	3502	printf "\n\n"
[179]	3503	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3504	then
[221]	3505	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3506	then
[366]	3507	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
	3508	# export MPI_DSM_DISTRIBUTE=1
	3509	# MPI_DSM_CPULIST: pin MPI processes to cores
[377]	3510	if [[ $use_openmp = false ]]
	3511	then
[412]	3512	if [[ "$sgi_feature" = ice2 ]]
	3513	then
	3514	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
	3515	else
	3516	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
	3517	fi
[622]	3518	else
	3519	unset MPI_DSM_CPULIST
[377]	3520	fi
[366]	3521	# MPI_IB_RAILS: use both IB rails on ICE2
	3522	export MPI_BUFS_PER_HOST=512
	3523	export MPI_IB_RAILS=2
[369]	3524	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
	3525	export MPI_CONNECTIONS_THRESHOLD=8192
[738]	3526	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
[562]	3527	export MPI_TYPE_DEPTH=20
[738]	3528	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
[683]	3529	export MPI_GROUP_MAX=64
[738]	3530	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
[693]	3531	if [[ $use_openmp = true ]]
	3532	then
	3533	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
	3534	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
	3535	else
	3536	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
	3537	fi
[388]	3538
	3539	# next is test for openmp usage
[622]	3540	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
	3541	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
[221]	3542	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3543	then
[374]	3544	export MV2_NUM_PORTS=2
[376]	3545	# The default setting of MV2_CPU_MAPPING gives best results
[405]	3546	# export MV2_ENABLE_AFFINITY=1
[376]	3547	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
[412]	3548	# if [[ "$sgi_feature" = ice2 ]]
	3549	# then
	3550	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
	3551	# else
	3552	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
	3553	# fi
[678]	3554	if [[ $use_openmp = true ]]
	3555	then
	3556	unset MV2_CPU_MAPPING
	3557	export MV2_ENABLE_AFFINITY=0
	3558	fi
[412]	3559	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
[678]	3560	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
[622]	3561	if [[ $use_openmp = true ]]
[405]	3562	then
[678]	3563	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
[693]	3564	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
[405]	3565	else
[693]	3566	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
[405]	3567	fi
[738]	3568	elif [[ "$mpilib" = impi ]]
	3569	then
[1058]	3570	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
	3571	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
[221]	3572	fi
[892]	3573	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
[179]	3574	then
[544]	3575	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[755]	3576	elif [[ $host = lcflow ]]
	3577	then
	3578	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
[1021]	3579	elif [[ $host = lcsb ]]
	3580	then
	3581	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
[1040]	3582	elif [[ $host = lckiaps ]]
	3583	then
	3584	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
[164]	3585	else
[223]	3586	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3587	fi
[1]	3588	else
[164]	3589
[206]	3590	# currently there is no full MPI-2 support on ICE and XT4
	3591	(( iia = $numprocs_atmos / $threads_per_task ))
	3592	(( iio = $numprocs_ocean / $threads_per_task ))
	3593	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3594	printf "\n using $coupled_mode coupling"
[102]	3595	printf "\n\n"
[164]	3596
[206]	3597	if [[ $coupled_mode = "mpi2" ]]
[164]	3598	then
[206]	3599	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3600	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3601	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3602	then
[197]	3603
[221]	3604	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3605	then
	3606	# export MPI_LAUNCH_TIMEOUT=360
	3607	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3608	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3609	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3610	then
	3611	# ulimit -s 300000 # A too large stack size causes problems
	3612	# export MV2_NUM_PORTS=2
	3613	# export MV2_CPU_MAPPING=0:1:2:3
	3614	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3615	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3616	fi
[197]	3617
[892]	3618	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
[206]	3619	then
[197]	3620
[206]	3621	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3622	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3623
	3624	else
	3625	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3626	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3627	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3628	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3629	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3630	fi
	3631	wait
	3632
[164]	3633	else
	3634
[206]	3635	echo "coupled_run $iia $iio" > runfile_atmos
	3636	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3637	then
	3638
[221]	3639	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3640	then
	3641	# export MPI_LAUNCH_TIMEOUT=360
	3642	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3643	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3644	then
	3645	# ulimit -s 300000 # A too large stack size causes problems
	3646	# export MV2_NUM_PORTS=2
	3647	# export MV2_CPU_MAPPING=0:1:2:3
	3648	mpiexec ./a.out $ROPTS < runfile_atmos
	3649	fi
[206]	3650
[892]	3651	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
[206]	3652	then
	3653
	3654	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3655
[718]	3656	elif [[ $host = lck \|\| $host = lckordi ]]
[367]	3657	then
	3658	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
[206]	3659	fi
	3660	wait
[164]	3661	fi
[102]	3662
[206]	3663	fi
[1]	3664	elif [[ $host = decalpha ]]
	3665	then
[102]	3666	dmpirun -np $numprocs a.out $ROPTS
[440]	3667	elif [[ $host = lckyoto ]]
	3668	then
	3669	set -xv
	3670	export P4_RSHCOMMAND=plesh
	3671	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
	3672	if [[ "$ENVIRONMENT" = BATCH ]]
	3673	then
[505]	3674	if [[ "$cond2" = fujitsu ]]
	3675	then
	3676	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
	3677	elif [[ "cond2" = pgi ]]
	3678	then
	3679	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
	3680	else
	3681	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
	3682	fi
[440]	3683	else
[505]	3684	if [[ "$cond2" = "" ]]
	3685	then
	3686	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
	3687	else
	3688	mpirun -np $numprocs ./a.out $ROPTS
	3689	fi
[440]	3690	fi
	3691	set +xv
[1]	3692	elif [[ $host = lctit ]]
	3693	then
[678]	3694	export OMP_NUM_THREADS=$threads_per_task
	3695	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3696	if [[ "$threads_per_task" != 1 ]]
	3697	then
	3698	export MV2_ENABLE_AFFINITY=0
	3699	fi
	3700	echo "----- PBS_NODEFILE content:"
	3701	cat $PBS_NODEFILE
	3702	echo "-----"
	3703	(( ii = $numprocs / $threads_per_task ))
	3704	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
	3705	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
[1]	3706	else
[102]	3707	mpprun -n $numprocs a.out $ROPTS
[1]	3708	fi
	3709	[[ $? != 0 ]] && execution_error=true
	3710
	3711
	3712	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3713	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3714	then
	3715	apprentice
	3716	fi
	3717	else
[102]	3718	a.out $ROPTS
[1]	3719	fi
	3720	fi
	3721	if [[ $? != 0 \|\| $execution_error = true ]]
	3722	then
	3723
	3724	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3725	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3726	printf "\n +++ runtime error occured"
	3727	locat=execution
	3728	exit
	3729	else
[102]	3730	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3731	printf "\n$striche\n *** execution finished \n"
[260]	3732
[261]	3733	# Stop the dvr streaming server and process the dvr output in order
	3734	# to create dvrs- and html-files containing all streams
[260]	3735	if [[ "$dvrserver_id" != "" ]]
	3736	then
	3737	kill $dvrserver_id
	3738	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3739
[262]	3740	# If there is a directory, data have been output by the
	3741	# streaming server. Otherwise, user has chosen dvrp_output=local
	3742	if [[ -d DATA_DVR ]]
	3743	then
[261]	3744
[262]	3745	# Add the current dvr configuration file to the dvr output
	3746	# directory
	3747	cp .dvrserver.config DATA_DVR
	3748
	3749	# Process the dvr output (option -s for also generating
	3750	# sequence mode data)
	3751	process_dvr_output -d DATA_DVR -f $fname -s
	3752
	3753	else
	3754
	3755	# Process the local output
	3756	process_dvr_output -l -d DATA_DVR -f $fname
	3757
	3758	fi
	3759
	3760	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3761	then
	3762
	3763	# Process dvr output generated in local mode (dvrp_output=local)
	3764	process_dvr_output -l -d DATA_DVR -f $fname
	3765
[260]	3766	fi
[1]	3767	fi
	3768
	3769
	3770
[503]	3771	# Call of combine_plot_fields in order to merge single files written
	3772	# by each PE into one file.
[920]	3773	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
	3774	then
	3775	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
	3776	printf "\n 2d- and/or 3d-data may be incomplete!"
	3777	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
	3778	elif [[ "$combine_plot_fields" == true ]]
	3779	then
	3780	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
	3781	combine_plot_fields${block}.x
	3782	else
	3783	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
	3784	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
	3785	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
	3786	fi
[503]	3787
	3788
	3789
[1]	3790	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3791	(( i = 0 ))
	3792	while (( i < ioc ))
	3793	do
	3794	(( i = i + 1 ))
	3795	if (( i == 1 ))
	3796	then
	3797	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3798	fi
	3799	printf "\n >>> ${out_command[$i]}"
	3800	eval ${out_command[$i]}
	3801	if (( i == ioc ))
	3802	then
	3803	printf "\n$striche\n"
	3804	fi
	3805	done
	3806
	3807
	3808	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3809	if [[ $do_trace = true ]]
	3810	then
	3811	printf "\n\n"
	3812	ls -al
	3813	fi
	3814
	3815
	3816
	3817	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3818	(( i = 0 ))
	3819	while (( i < iout ))
	3820	do
	3821	(( i = i + 1 ))
	3822	if (( i == 1 ))
	3823	then
	3824	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3825	fi
	3826
	3827	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3828	files_for_pes=false; filetyp=file
	3829	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3830	then
	3831	files_for_pes=true; filetyp=directory
	3832	actionout[$i]=""
	3833	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3834	then
	3835	actionout[$i]=""
	3836	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3837	then
	3838	files_for_pes=true; filetyp=directory
	3839	actionout[$i]="ar"
	3840	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3841	then
	3842	actionout[$i]="ar"
	3843	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3844	then
	3845	files_for_pes=true; filetyp=directory
	3846	actionout[$i]="fl"
	3847	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3848	then
	3849	actionout[$i]="fl"
	3850	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3851	then
	3852	files_for_pes=true; filetyp=directory
	3853	actionout[$i]="tr"
	3854	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3855	then
	3856	actionout[$i]="tr"
	3857	fi
	3858
	3859	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3860	then
	3861	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3862	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3863	then
	3864	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3865	else
	3866
	3867
	3868	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3869	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3870	# REMOTE-RECHNUNGEN
	3871	if [[ "${actionout[$i]}" = tr ]]
	3872	then
	3873	if [[ $localhost != $fromhost ]]
	3874	then
	3875	if [[ $files_for_pes = false ]]
	3876	then
	3877	cps=""
	3878	cst=""
	3879	else
	3880	cps=-c
	3881	cst="/"
	3882	fi
[622]	3883	if [[ $localhost = nech ]]
[1]	3884	then
	3885
	3886	# TRANSFER IN EIGENSTAENDIGEM JOB
	3887	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3888	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3889	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3890	if [[ $files_for_pes = false ]]
	3891	then
	3892	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3893	else
	3894	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3895	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3896	fi
	3897
	3898	echo "set -x" > transfer_${localout[$i]}
	3899	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3900
	3901	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	3902	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	3903	printf "\n or higher cycle\n"
	3904	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3905
[1]	3906	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3907
	3908	if [[ $localhost = nech ]]
	3909	then
[82]	3910	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3911	else
	3912	if [[ "$LOGNAME" = b323013 ]]
	3913	then
[164]	3914	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3915	else
[164]	3916	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3917	fi
	3918	fi
	3919
	3920	else
	3921
	3922	# TRANSFER INNERHALB DIESES JOBS
	3923	transfer_failed=false
[82]	3924	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	3925	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	3926	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3927	[[ $? != 0 ]] && transfer_failed=true
[1]	3928
	3929	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3930	# LOKALER MASCHINE ANLEGEN
	3931	if [[ $transfer_failed = true ]]
	3932	then
	3933	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3934	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3935
	3936	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3937	# ANLEGEN.
	3938	eval local_catalog=${pathout[$i]}
	3939	if [[ ! -d $local_catalog ]]
	3940	then
	3941	printf " *** local directory does not exist. Trying to create:\n"
	3942	printf " $local_catalog \n"
	3943	mkdir -p $local_catalog
	3944	fi
	3945	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3946	transfer_problems=true
	3947	fi
	3948	fi
	3949	else
	3950
	3951	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	3952	actionout[$i]=""
	3953	fi
	3954	fi
	3955
	3956
	3957	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3958	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3959	# REMOTE-RECHNUNGEN
	3960	if [[ "${actionout[$i]}" = tra ]]
	3961	then
	3962	if [[ $localhost != $fromhost ]]
	3963	then
[622]	3964	if [[ $localhost = ibmh \|\| $localhost = nech ]]
[1]	3965	then
	3966
	3967	# TRANSFER IN EIGENSTAENDIGEM JOB
	3968	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3969	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3970	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3971	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3972
	3973	echo "set -x" > transfer_${localout[$i]}
	3974	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3975
	3976	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	3977	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	3978	printf "\n or higher cycle\n"
	3979	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3980
[1]	3981	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3982
	3983	if [[ $localhost = nech ]]
	3984	then
[82]	3985	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3986	else
	3987	if [[ $LOGNAME = b323013 ]]
	3988	then
[164]	3989	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3990	else
[164]	3991	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3992	fi
	3993	fi
	3994
	3995	else
	3996
	3997	# TRANSFER INNERHALB DIESES JOBS
	3998	transfer_failed=false
[82]	3999	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	4000	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	4001	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	4002	[[ $? != 0 ]] && transfer_failed=true
[1]	4003
	4004	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	4005	# LOKALER MASCHINE ANLEGEN
	4006	if [[ $transfer_failed = true ]]
	4007	then
	4008	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	4009	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	4010
	4011	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	4012	# ANLEGEN
	4013	eval local_catalog=${pathout[$i]}
	4014	if [[ ! -d $local_catalog ]]
	4015	then
	4016	printf " *** local directory does not exist. Trying to create:\n"
	4017	printf " $local_catalog \n"
	4018	mkdir -p $local_catalog
	4019	fi
	4020
	4021	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	4022	transfer_problems=true
	4023	fi
	4024	fi
	4025	else
	4026
	4027	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	4028	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	4029	actionout[$i]=a
	4030	fi
	4031	fi
	4032
	4033
	4034	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	4035	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	4036	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	4037	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	4038	if [[ "${actionout[$i]}" = fl ]]
	4039	then
	4040	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4041	chmod g+rx $tmp_data_catalog
	4042	if [[ $files_for_pes = false ]]
	4043	then
	4044	printf "\n >>> OUTPUT: ${localout[$i]} to"
	4045	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	4046	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	4047	else
	4048	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	4049	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	4050	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	4051	cd ${localout[$i]}
	4052	for file in $(ls *)
	4053	do
	4054	ln -f $file $tmp_data_catalog/${frelout[$i]}
	4055	done
	4056	cd $TEMPDIR
[1]	4057	fi
	4058
	4059
	4060	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	4061	if [[ $store_on_archive_system = true ]]
	4062	then
	4063
	4064	if [[ $archive_system = asterix ]]
	4065	then
	4066	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4067	if [[ $files_for_pes = false ]]
	4068	then
	4069	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4070	else
	4071	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4072	fi
	4073	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4074	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	4075	echo "then" >> archive_${frelout[$i]}
	4076	echo " do_stageout=false" >> archive_${frelout[$i]}
	4077	echo "else" >> archive_${frelout[$i]}
	4078	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	4079	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	4080	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	4081	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	4082	if [[ $files_for_pes = false ]]
	4083	then
	4084	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	4085	else
	4086	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	4087	fi
	4088	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	4089	echo "fi" >> archive_${frelout[$i]}
	4090	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4091	elif [[ $archive_system = DMF ]]
	4092	then
	4093	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4094	if [[ $files_for_pes = false ]]
	4095	then
	4096	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	4097	locat=DMF
	4098	exit
	4099	else
	4100	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	4101	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	4102	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	4103	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	4104	fi
	4105	elif [[ $archive_system = tivoli ]]
	4106	then
	4107	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4108	if [[ $files_for_pes = false ]]
	4109	then
	4110	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4111	echo "set -x" >> archive_${frelout[$i]}
	4112	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4113	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4114	else
	4115
	4116	echo "set -x" >> archive_${frelout[$i]}
	4117	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	4118	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4119	cd $tmp_data_catalog
	4120	all_files=`ls -1 ${frelout[$i]}/*`
	4121	cd - > /dev/null
	4122	(( inode = 0 ))
	4123	(( tp1 = tasks_per_node + 1 ))
	4124	while (( inode < nodes ))
	4125	do
	4126	# echo "*** all_files = \"$all_files\" "
	4127	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	4128	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	4129	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	4130	# echo "*** files = \"$files\" "
	4131	# echo "*** all_files = \"$all_files\" "
[416]	4132	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4133	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4134	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
	4135	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[397]	4136	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	4137	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[1]	4138	(( inode = inode + 1 ))
	4139	done
	4140	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4141	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4142	fi
	4143	elif [[ $archive_system = ut ]]
	4144	then
	4145	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4146	if [[ $files_for_pes = false ]]
	4147	then
	4148	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4149	echo "set -x" >> archive_${frelout[$i]}
	4150	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4151	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4152	else
	4153
	4154	echo "set -x" >> archive_${frelout[$i]}
	4155	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	4156	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4157	cd $tmp_data_catalog
	4158	all_files=`ls -1 ${frelout[$i]}/*`
	4159	cd - > /dev/null
	4160	(( inode = 0 ))
	4161	(( tp1 = tasks_per_node + 1 ))
	4162	while (( inode < nodes ))
	4163	do
	4164	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	4165	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	4166	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4167	(( inode = inode + 1 ))
	4168	done
	4169	fi
	4170	elif [[ $archive_system = none ]]
	4171	then
	4172	printf " +++ archiving on $localhost not available!\n"
	4173	fi
	4174
	4175	if [[ $archive_system != none ]]
	4176	then
[399]	4177	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
[1]	4178	then
[164]	4179	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[416]	4180	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
[1]	4181	elif [[ $localhost = nech ]]
	4182	then
[82]	4183	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	4184	fi
	4185	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4186	fi
	4187	else
[399]	4188	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
[1]	4189	fi
	4190
	4191
	4192	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	4193	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	4194	if [[ $files_for_pes = false ]]
	4195	then
	4196	cat /dev/null > ${pathout[$i]}
	4197	else
	4198	mkdir -p ${pathout[$i]}
	4199	fi
	4200
	4201	fi
	4202
	4203
	4204	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	4205	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	4206	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	4207	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	4208	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	4209	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	4210	if [[ "${actionout[$i]}" = ar ]]
	4211	then
	4212	if [[ $files_for_pes = false ]]
	4213	then
	4214	printf "\n >>> OUTPUT: ${localout[$i]} to"
	4215	printf "\n ${pathout[$i]}"
	4216	printf "\n File will be copied to archive-system ($archive_system) !\n"
	4217	else
	4218	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	4219	printf "\n ${pathout[$i]}"
	4220	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	4221	fi
	4222	mv ${localout[$i]} ${frelout[$i]}
	4223
	4224	file_saved=false
	4225
	4226	if [[ $archive_system = asterix ]]
	4227	then
	4228	do_stageout=true
	4229	(( stageout_anz = 0 ))
	4230	while [[ $do_stageout = true ]]
	4231	do
	4232	if [[ $files_for_pes = false ]]
	4233	then
	4234	stageout ${frelout[$i]} > STAGE_OUTPUT
	4235	else
	4236	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	4237	fi
	4238	cat STAGE_OUTPUT
	4239	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	4240	then
	4241	file_saved=true
	4242	do_stageout=false
	4243	else
	4244	if [[ $files_for_pes = false ]]
	4245	then
	4246	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	4247	else
	4248	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	4249	fi
	4250	(( stageout_anz = stageout_anz + 1 ))
	4251	if (( stageout_anz == 10 ))
	4252	then
	4253	printf "\n +++ stoped after 10 unsuccessful tries!"
	4254	archive_save=false
	4255	do_stageout=false
	4256	else
	4257	printf "\n *** new try to store on archive after 15 min:"
	4258	sleep 900
	4259	fi
	4260	fi
	4261	done
	4262	elif [[ $archive_system = DMF ]]
	4263	then
	4264	if [[ $files_for_pes = false ]]
	4265	then
	4266	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	4267	locat=DMF
	4268	exit
	4269	else
	4270	rm -rf $ARCHIVE/${frelout[$i]}
	4271	cp -r ${frelout[$i]} $ARCHIVE
	4272	fi
	4273	file_saved=true
	4274	elif [[ $archive_system = tivoli ]]
	4275	then
	4276	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4277	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4278	# GELEGT WERDEN
	4279	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4280	chmod g+rx $tmp_data_catalog
	4281	if [[ $files_for_pes = false ]]
	4282	then
	4283	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4284	else
	4285	mkdir $tmp_data_catalog/${frelout[$i]}
	4286	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4287	fi
	4288
	4289	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4290	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4291	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4292	if [[ $files_for_pes = false ]]
	4293	then
	4294	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4295	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4296	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4297	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4298	else
	4299	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4300	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4301	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4302	fi
	4303
[164]	4304	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	4305	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4306	file_saved=true
	4307
	4308	elif [[ $archive_system = ut ]]
	4309	then
	4310	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4311	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4312	# GELEGT WERDEN
	4313	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4314	chmod g+rx $tmp_data_catalog
	4315	if [[ $files_for_pes = false ]]
	4316	then
	4317	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4318	else
	4319	mkdir $tmp_data_catalog/${frelout[$i]}
	4320	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4321	fi
	4322
	4323	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4324	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4325	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4326	if [[ $files_for_pes = false ]]
	4327	then
	4328	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4329	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4330	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4331	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4332	else
	4333	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4334	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4335	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4336	fi
	4337
[82]	4338	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	4339	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4340	file_saved=true
	4341
	4342	else
	4343	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	4344	archive_save=false
	4345	fi
	4346	if [[ $file_saved = true ]]
	4347	then
	4348	if [[ $files_for_pes = false ]]
	4349	then
	4350	cat /dev/null > ${pathout[$i]}
	4351	else
	4352	mkdir -p ${pathout[$i]}
	4353	fi
	4354	fi
	4355	fi
	4356
	4357	# APPEND AUF LOKALER MASCHINE
	4358	if [[ "${actionout[$i]}" = "a" ]]
	4359	then
[741]	4360	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
	4361	then
	4362	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
	4363	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
	4364	else
	4365	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	4366	cat ${localout[$i]} >> ${pathout[$i]}
	4367	fi
[1]	4368	fi
	4369
	4370	# KOPIEREN AUF LOKALER MASCHINE
	4371	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	4372	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	4373	then
	4374
	4375	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	4376	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	4377	then
	4378	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	4379	if [[ $link_local_output = true ]]
	4380	then
	4381	printf " using ln -f\n"
	4382	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4383	fi
	4384	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4385	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	4386	then
	4387	if [[ $link_local_output = true ]]
	4388	then
	4389	printf " ln failed, using cp...\n"
	4390	fi
	4391	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4392	fi
[1]	4393	else
	4394	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	4395	if [[ $link_local_output = true ]]
	4396	then
	4397	printf " using ln -f\n"
	4398	ln -f ${localout[$i]} ${pathout[$i]}
	4399	fi
	4400	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4401	if [[ ! -f "${pathout[$i]}" ]]
	4402	then
	4403	if [[ $link_local_output = true ]]
	4404	then
	4405	printf " ln failed, using cp...\n"
	4406	fi
	4407	cp ${localout[$i]} ${pathout[$i]}
	4408	fi
[1]	4409	fi
	4410
	4411	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	4412	then
	4413
	4414	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	4415	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	4416	# WIRD DANN KOPIERT
	4417	# PER MOVE UMBENANNT WERDEN
	4418	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	4419	if [[ $link_local_output = true ]]
	4420	then
	4421	printf " using ln -f\n"
	4422	mkdir ${pathout[$i]}
	4423	cd ${localout[$i]}
	4424	for file in $(ls *)
	4425	do
	4426	ln -f $file ${pathout[$i]}
	4427	done
	4428	cd $TEMPDIR
	4429	fi
	4430	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	4431	if [[ ! -f "${pathout[$i]}/_0000" ]]
	4432	then
	4433	if [[ $link_local_output = true ]]
	4434	then
	4435	printf " ln failed for .../_0000, using cp...\n"
	4436	fi
	4437	cp -r ${localout[$i]} ${pathout[$i]}
	4438	fi
[1]	4439
	4440	fi
	4441	fi
	4442	done
	4443	if (( i != 0 ))
	4444	then
	4445	if [[ $transfer_problems = true ]]
	4446	then
	4447	printf "\n$striche\n *** OUTPUT-files saved"
	4448	printf "\n +++ WARNING: some data transfers failed! \n"
	4449	else
	4450	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4451	fi
	4452	fi
	4453
	4454
	4455	# EVENTUELL FOLGEJOB STARTEN
	4456	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4457	if [[ -f CONTINUE_RUN ]]
	4458	then
	4459
	4460	if [[ $archive_save = true ]]
	4461	then
	4462
	4463	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4464	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4465	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4466	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4467	# HANDEN
	4468	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4469	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4470	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4471	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4472	then
	4473	mc=`echo $mc \| sed 's/#/f/g'`
	4474	fi
	4475
	4476
	4477	# JOB STARTEN
	4478	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4479	echo " $mc"
	4480	printf "\n$striche\n"
	4481	if [[ $localhost != $fromhost ]]
	4482	then
	4483
[693]	4484	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
[1]	4485	then
	4486	echo "*** ssh will be used to initiate restart-runs!"
	4487	echo " return_addres=\"$return_addres\" "
	4488	echo " return_username=\"$return_username\" "
[635]	4489	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
[1]	4490	then
[985]	4491	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4492	else
[693]	4493	if [[ $localhost = ibmkisti ]]
	4494	then
	4495	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
	4496	else
	4497	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4498	fi
[1]	4499	fi
	4500	else
	4501	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4502	locat=restart; exit
	4503	fi
	4504
	4505	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4506	# DER AKTUELLE JOB ENDET
[399]	4507	if [[ $queue = special1q ]]
	4508	then
	4509	sleep 120
	4510	else
	4511	sleep 30
	4512	fi
[1]	4513
	4514	else
	4515
	4516	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4517	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4518	cd $LOCAL_PWD
[108]	4519	if [[ $localhost = lcfimm ]]
	4520	then
	4521	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4522	else
	4523	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4524	fi
[1]	4525	cd - > /dev/null
	4526	fi
	4527	printf "\n$striche\n *** restart-run initiated \n"
	4528
	4529
	4530	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4531	# GEHOLT WORDEN SIND, LOESCHEN
	4532	(( i = 0 ))
	4533	while (( i < iin ))
	4534	do
	4535	(( i = i + 1 ))
	4536	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4537	then
	4538	rm -r $tmp_data_catalog/${frelin[$i]}
	4539	fi
	4540	done
	4541
	4542	else
	4543
	4544	printf "\n +++ no restart-run possible, since errors occured"
	4545	printf "\n during the archive process"
	4546	fi
	4547
	4548	fi
	4549
	4550
	4551
	4552	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4553	if [[ "$email_notification" != "none" ]]
[1]	4554	then
	4555
	4556	if [[ $localhost != $fromhost ]]
	4557	then
	4558	if [[ -f CONTINUE_RUN ]]
	4559	then
	4560	echo "PALM restart run necessary" > email_text
	4561	echo "description header of actual run:" >> email_text
	4562	cat CONTINUE_RUN >> email_text
	4563	echo "mrun-command to restart:" >> email_text
	4564	echo "$mc" >> email_text
	4565	else
	4566	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4567	fi
	4568	mail $email_notification < email_text
	4569	printf "\n *** email notification sent to \"$email_notification\" "
	4570	fi
	4571	fi
	4572
	4573
	4574
	4575	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4576	cd $HOME
	4577	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4578
	4579	else
	4580
	4581
	4582	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4583	# CHENDE AKTIONEN DURCHGEFUEHRT
	4584
	4585	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[821]	4586	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	4587	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4588	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4589	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4590	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4591	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4592	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4593	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4594	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4595	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4596	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4597	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4598	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4599	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4600	if [[ $use_openmp = true ]]
	4601	then
[622]	4602	mrun_com=${mrun_com}" -O $threads_per_task"
[1]	4603	fi
[759]	4604	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
[397]	4605	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
[1]	4606	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4607	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4608	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4609	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4610	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4611	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[920]	4612	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
	4613	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
[759]	4614	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
[1]	4615	if [[ $do_remote = true ]]
	4616	then
	4617	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4618	fi
	4619
	4620
	4621	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4622	jobfile=jobfile.$RANDOM
	4623
	4624
	4625	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4626	echo "mkdir $TEMPDIR" >> $jobfile
	4627	echo "cd $TEMPDIR" >> $jobfile
	4628
	4629
	4630	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4631	if [[ $do_trace = true ]]
	4632	then
	4633	echo "set -x" >> $jobfile
	4634	else
	4635	echo "set +vx" >> $jobfile
	4636	fi
	4637
	4638
[1043]	4639	# initialize the environment and load modules
	4640	if [[ "$init_cmds" != "" ]]
	4641	then
	4642	echo "$init_cmds" >> $jobfile
	4643	fi
	4644	if [[ "$module_calls" != "" ]]
	4645	then
	4646	echo "$module_calls" >> $jobfile
	4647	fi
	4648
	4649
[191]	4650	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4651	# DATEI FUER DEN JOB
[693]	4652	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
[1]	4653	then
	4654
[191]	4655	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4656	# KOPIEREN
	4657	if [[ $restart_run != true ]]
	4658	then
	4659	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4660	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4661	fi
[1]	4662
[191]	4663	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[693]	4664	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
[193]	4665	echo "set -x" >> $jobfile
[693]	4666	if [[ $host = $localhost ]]
	4667	then
	4668	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4669	else
	4670	if [[ $host != ibmkisti ]]
	4671	then
	4672	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4673	else
	4674	# on KISTI's IBM firewall is only opened on interactive node
	4675	echo "localdir=\`pwd\`" >> $jobfile
	4676	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
	4677	fi
	4678	fi
[193]	4679	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4680
[193]	4681	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4682	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4683	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4684	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4685	echo "execute_mrun=true" >> $jobfile
	4686	echo " " >> $jobfile
	4687
[191]	4688	else
	4689
	4690	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4691	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4692	if [[ $do_compile = true ]]
	4693	then
	4694
	4695	source_catalog=SOURCES_FOR_RUN_$fname
	4696
	4697	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4698	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4699	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4700	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4701	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4702	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4703
	4704	for filename in $source_list
	4705	do
	4706	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4707	echo "cat > $filename << \"%END%\"" >> $jobfile
	4708	cat $source_catalog/$filename >> $jobfile
	4709	echo " " >> $jobfile
	4710	echo "%END%" >> $jobfile
	4711	echo " " >> $jobfile
	4712	done
	4713
[1]	4714	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4715	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4716	cat $source_catalog/Makefile >> $jobfile
[1]	4717	echo " " >> $jobfile
	4718	echo "%END%" >> $jobfile
	4719	echo " " >> $jobfile
	4720
[191]	4721	echo "cd - > /dev/null" >> $jobfile
[1]	4722
[191]	4723	fi
[1]	4724
	4725
[191]	4726	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4727	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4728	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4729	cat $config_file >> $jobfile
	4730	echo "%END%" >> $jobfile
	4731	echo " " >> $jobfile
[1]	4732
	4733
[191]	4734	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4735	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[693]	4736	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4737	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4738	echo "%END%" >> $jobfile
[191]	4739	echo "chmod u+x $mrun_script_name" >> $jobfile
	4740	echo "execute_mrun=true" >> $jobfile
	4741	echo " " >> $jobfile
[1]	4742
	4743	fi
	4744
[191]	4745
[1]	4746	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4747	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4748	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4749	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4750	if [[ $do_remote = true ]]
	4751	then
	4752	(( i = 0 ))
	4753	while (( i < iin ))
	4754	do
	4755	(( i = i + 1 ))
	4756	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4757	if [[ "${transin[$i]}" = job ]]
	4758	then
	4759	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4760	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4761	echo " " >> $jobfile
	4762	echo "%END%" >> $jobfile
	4763	else
[82]	4764	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4765	fi
	4766
	4767	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4768	echo "if [[ \$? = 1 ]]" >> $jobfile
	4769	echo "then" >> $jobfile
	4770	echo " echo \" \" " >> $jobfile
	4771	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4772	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4773	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4774	echo " execute_mrun=false" >> $jobfile
	4775	echo "fi" >> $jobfile
	4776	done
	4777	fi
	4778
	4779	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4780	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4781	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4782	echo "export LOCAL_PWD" >> $jobfile
	4783
	4784	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4785	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4786	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4787
[66]	4788	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4789	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4790	then
	4791	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4792	fi
[1]	4793
[693]	4794	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
[1]	4795	echo "set -x" >> $jobfile
[693]	4796	echo "queue=$queue" >> $jobfile
[1]	4797	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4798
	4799	echo 'ls -al; echo `pwd`' >> $jobfile
	4800	echo "cd \$HOME" >> $jobfile
	4801	echo "rm -rf $TEMPDIR" >> $jobfile
	4802
	4803
	4804
	4805
	4806	# JOB PER SUBJOB STARTEN
	4807	if [[ $silent = false ]]
	4808	then
	4809	printf "\n "
	4810	else
	4811	printf "\n\n"
	4812	fi
	4813
[352]	4814	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
[1]	4815	rm -rf $jobfile
	4816
	4817
	4818	fi # ENDE REMOTE-TEIL
	4819
	4820
	4821
	4822	# ENDE DER PROZEDUR

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |