Home

Context Navigation

source: palm/trunk/SCRIPTS/mrun @ 1083

Last change on this file since 1083 was 1083, checked in by maronga, 11 years ago
bugfixes in parameter file check
Property svn:keywords set to `Id Rev`
File size: 175.4 KB

Line
1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# -----------------
24	# bugfix in parameter file check (read %cpp_options was missing)
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1083 2013-01-04 10:22:09Z maronga $
29	#
30	# 1069 2012-11-28 16:18:43Z maronga
31	# bugfix: coupling mode was always set to mpi2, typos removed
32	#
33	# 1058 2012-11-21 07:00:35Z raasch
34	# Intel inspector (inspxe) is given the number of PEs instead of the number of
35	# nodes
36	#
37	# 1046 2012-11-09 14:38:45Z maronga
38	# code put under GPL (PALM 3.9)
39	#
40	# 21/03/94 - Siggi - first version (1.0)
41	# 03/03/94 - Siggi - start with developing the script
42	#--------------------------------------------------------------------------------#
43
44
45
46	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
47
48	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
49	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
50	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
51
52	AddFilenames=""
53	additional_conditions=""
54	add_source_path=""
55	afname=""
56	archive_save=true
57	archive_system=none
58	check_namelist_files=true
59	combine_plot_fields=true
60	compiler_name=""
61	cond1=""
62	cond2=""
63	config_file=.mrun.config
64	coupled_dist=""
65	coupled_mode="mpi1"
66	cpp_opts=""
67	cpp_options=""
68	cpumax=0
69	cpurest=0
70	delete_temporary_catalog=true
71	do_batch=false
72	do_compile=true
73	do_remote=false
74	do_stagein=true
75	do_stageout=true
76	do_trace=false
77	email_notification="none"
78	exclude=""
79	executable=""
80	execution_error=false
81	fimm=false
82	fname=test
83	fromhost=""
84	global_revision=""
85	group_number=none
86	host=""
87	host_file=""
88	hp=""
89	ignore_archive_error=false
90	input_list=""
91	interpreted_config_file=""
92	job_catalog="~/job_queue"
93	job_on_file=""
94	keep_data_from_previous_run=false
95	link_local_input=false
96	link_local_output=false
97	localhost_realname=$(hostname)
98	local_compile=false
99	local_dvrserver_running=.FALSE.
100	locat=normal
101	mainprog=""
102	makefile=""
103	max_par_io_str=""
104	mc=$0
105	while [[ $(echo $mc \| grep -c "/") != 0 ]]
106	do
107	mc=`echo $mc \| cut -f2- -d"/"`
108	done
109	module_calls=""
110	mrun_script_name=$mc
111	netcdf_inc=""
112	netcdf_lib=""
113	netcdf_support=false
114	node_usage=default
115	numprocs=""
116	numprocs_atmos=0
117	numprocs_ocean=0
118	OOPT=""
119	openmp=false
120	output_list=""
121	package_list=""
122	punkte="..........................................................."
123	queue=none
124	read_from_config=""
125	restart_run=false
126	if [[ `hostname` = rte10 ]]
127	then
128	return_addres=133.5.185.60
129	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
130	elif [[ `hostname` = climate0 ]]
131	then
132	return_addres=165.132.26.68
133	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
134	elif [[ `hostname` = urban00 ]]
135	then
136	return_addres=147.46.30.151
137	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
138	else
139	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
140	fi
141	return_password=""
142	return_username=$LOGNAME
143	remotecall=false
144	remote_username=""
145	run_coupled_model=false
146	run_mode=""
147	scirocco=false
148	store_on_archive_system=false
149	striche=" ----------------------------------------------------------------------------"
150	silent=false
151	source_list=""
152	source_path=SOURCE
153	tasks_per_node=""
154	threads_per_task=1
155	tmpcreate=false
156	tmp_data_catalog=""
157	transfer_problems=false
158	usern=$LOGNAME
159	use_openmp=false
160	working_directory=`pwd`
161	TOPT=""
162	XOPT=""
163	zeit=$( date \| cut -c 12-19 )
164
165	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
166	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
167
168	typeset -R30 calltime
169	typeset -L20 spalte1
170	typeset -L40 spalte2
171	typeset -L60 spalte3
172	typeset -L35 string1=`date`
173	typeset -L12 string2=$usern
174	typeset -L12 string3=$localhost_realname
175	typeset -L12 string4
176	typeset -L12 string5
177	typeset -L30 version="MRUN 2.0 Rev$Rev: 1083 $"
178
179
180
181	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
182	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
183
184	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
185	# EXPORTIERT WERDEN
186	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
187	export group_number input_list memory numprocs output_list queue run_mode
188
189
190
191	# FEHLERBEHANDLUNG
192	# BEI EXIT:
193	trap 'rm -rf $working_directory/tmp_mrun
194	if [[ $locat != localhost ]]
195	then
196	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
197	# then
198	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
199	#MRUN-calls on $localhost
200	#
201	#date and time user localhost remotehost termination mrun-command
202	#--------------------------------------------------------------------------------------------------------------------
203	#%STATEND%
204	# chmod 666 ${mrun_path}/statistik/mrun_statistik
205	# fi
206	#
207	# # EINTRAG IN DIE STATISTIK-DATEI
208	# string4=$host
209	# string5=$locat
210	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
211	# then
212	# if [[ $do_batch = true ]]
213	# then
214	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
215	# else
216	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
217	# fi
218	# fi
219	echo " " > /dev/null
220	fi
221
222	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
223	then
224
225	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
226	(( i = 0 ))
227	while (( i < iec ))
228	do
229	(( i = i + 1 ))
230	printf "\n *** Execution of ERROR-command:\n"
231	printf " >>> ${err_command[$i]}\n"
232	eval ${err_command[$i]}
233	done
234	if [[ -n $interpreted_config_file ]] then
235	rm -rf $interpreted_config_file
236	fi
237	if [[ -n .mrun_environment ]] then
238	rm -rf .mrun_environment
239	fi
240	if [[ $tmpcreate = true ]]
241	then
242	printf "\n *** Contents of \"$TEMPDIR\":\n"
243	ls -al; cd
244	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
245	fi
246	if [[ "$dvrserver_id" != "" ]]
247	then
248	echo "+++ killing dvrserver_id=$dvrserver_id"
249	kill $dvrserver_id
250	fi
251	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
252	then
253	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
254	fi
255	printf "\n\n+++ MRUN killed \n\n"
256	elif [[ $locat != control_c ]]
257	then
258	printf "\n\n --> all actions finished\n\n"
259	printf " Bye, bye $usern !!\n\n"
260	fi' exit
261
262
263	# BEI TERMINAL-BREAK:
264	trap 'rm -rf $working_directory/tmp_mrun
265	rm -rf $working_directory/tmp_check_namelist_files
266	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
267	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
268	then
269	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
270	fi
271	if [[ "$dvrserver_id" != "" ]]
272	then
273	echo "+++ killing dvrserver_id=$dvrserver_id"
274	kill $dvrserver_id
275	fi
276	printf "\n+++ MRUN killed by \"^C\" \n\n"
277	locat=control_c
278	exit
279	' 2
280
281
282	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
283	# BEEN SET
284	if [[ "$PALM_BIN" = "" ]]
285	then
286	printf "\n +++ environment variable PALM_BIN has not been set"
287	printf "\n please set it to the directory where the PALM scripts are located"
288	locat=palm_bin; exit
289	fi
290	export PATH=$PALM_BIN:$PATH
291
292
293
294	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
295	# FUER FOLGEJOBS BENOETIGT WIRD
296	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
297	do
298	case $option in
299	(a) afname=$OPTARG;;
300	(A) store_on_archive_system=true; mc="$mc -A";;
301	(b) do_batch=true; mc="$mc -b";;
302	(B) delete_temporary_catalog=false; mc="$mc -B";;
303	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
304	(C) restart_run=true; mc="$mc -C";;
305	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
306	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
307	(F) job_on_file="-D"; mc="$mc -F";;
308	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
309	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
310	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
311	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
312	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
313	(I) ignore_archive_error=true; mc="$mc -I";;
314	(k) keep_data_from_previous_run=true; mc="$mc -k";;
315	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
316	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
317	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
318	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
319	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
320	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
321	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
322	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
323	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
324	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
325	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
326	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
327	(S) read_from_config=false; mc="$mc -S";;
328	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
329	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
330	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
331	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
332	(v) silent=true; mc="$mc -v";;
333	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
334	(x) do_trace=true;set -x; mc="$mc -x";;
335	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
336	(y) ocean_file_appendix=true; mc="$mc -y";;
337	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
338	(z) check_namelist_files=false; mc="$mc -z";;
339	(Z) combine_plot_fields=false; mc="$mc -Z";;
340	(\?) printf "\n +++ unknown option $OPTARG \n"
341	printf "\n --> type \"$0 ?\" for available options \n"
342	locat=parameter;exit;;
343	esac
344	done
345
346
347	# EVTL. POSITIONSPARAMETER EINLESEN
348	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
349	shift OPTIND-1
350
351
352	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
353	if [[ "$1" = "?" ]]
354	then
355	(printf "\n *** mrun can be called as follows:\n"
356	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
357	printf "\n Description of available options:\n"
358	printf "\n Option Description Default-Value"
359	printf "\n -a base name of input files equiv. -d"
360	printf "\n -A archiving when using file-attribute fl"
361	printf "\n -b batch-job on local machine ---"
362	printf "\n -B do not delete temporary directory at end ---"
363	printf "\n -c configuration file .mrun.config"
364	printf "\n -d base name of files attached to program test"
365	printf "\n -D preprocessor(cpp)-directives \"\" "
366	printf "\n -F create remote job file only ---"
367	printf "\n -h execution host $localhost_realname"
368	printf "\n -i INPUT control list \"\" "
369	printf "\n -I archiving errors of previous batch-jobs"
370	printf "\n will be ignored"
371	printf "\n -k keep data from previous run"
372	printf "\n -K additional conditions for controling"
373	printf "\n usage of conditional code and"
374	printf "\n env-variables in configuration file \"\" "
375	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
376	printf "\n -M Makefile name Makefile"
377	printf "\n -n node usage (shared/not_shared) depending on -h"
378	printf "\n -o OUTPUT control list \"\" "
379	printf "\n -O use OpenMP ---"
380	printf "\n -p software package list \"\" "
381	printf "\n -q queue \"$queue\" "
382	printf "\n -r run control list (combines -i -o) \"\" "
383	printf "\n -s filenames of routines to be compiled \"\" "
384	printf "\n must end with .f, .f90, .F, or .c !"
385	printf "\n use \"..\" for more than one file and wildcards"
386	printf "\n -s LM compiles all locally modified files"
387	printf "\n -S config file interpreted by shellscript ---"
388	printf "\n -t allowed cpu-time in seconds (batch) 0"
389	printf "\n -T tasks per node depending on -h"
390	printf "\n -u username on remote machine \"\" "
391	printf "\n -v no prompt for confirmation ---"
392	printf "\n -w maximum parallel io streams as given by -X"
393	printf "\n -x tracing of mrun for debug purposes ---"
394	printf "\n -X # of processors (on parallel machines) 1"
395	printf "\n -y add appendix \"_O\" to all local output"
396	printf "\n files (ocean precursor runs followed by"
397	printf "\n coupled atmosphere-ocean runs) ---"
398	printf "\n -Y run coupled model, \"#1 #2\" with"
399	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
400	printf "\n -z disable a priori parameter file check ---"
401	printf "\n -Z skip combine_plot_fields at the end of "
402	printf "\n the simulation ---"
403	printf "\n "
404	printf "\n Possible values of positional parameter <modus>:"
405	printf "\n \"?\" - this outline \n\n") \| more
406	exit
407	elif [[ "$1" != "" ]]
408	then
409	printf "\n +++ positional parameter $1 unknown \n"
410	locat=parameter; exit
411	fi
412
413
414
415	# KURZE STARTMELDUNG
416	printf "\n*** $version "
417	printf "\n will be executed. Please wait ..."
418
419
420
421	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
422	if [[ ! -f $config_file ]]
423	then
424	printf "\n\n +++ configuration file: "
425	printf "\n $config_file"
426	printf "\n does not exist"
427	locat=connect; exit
428	fi
429
430
431	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
432	line=""
433	grep "%host_identifier" $config_file > tmp_mrun
434	while read line
435	do
436	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
437	then
438	HOSTNAME=`echo $line \| cut -d" " -s -f2`
439	host_identifier=`echo $line \| cut -d" " -s -f3`
440	if [[ $localhost_realname = $HOSTNAME ]]
441	then
442	localhost=$host_identifier
443	break
444	fi
445	fi
446	done < tmp_mrun
447
448	if [[ "$localhost" = "" ]]
449	then
450	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
451	printf "\n for local host \"$localhost_realname\"."
452	printf "\n Please add line"
453	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
454	printf "\n to the configuration file."
455	locat=localhost; exit
456	fi
457
458
459	# HOSTSPEZIFISCHE VARIABLEN SETZEN
460	case $localhost_realname in
461	(r1\|r2\|h01\|b01) archive_system=tivoli;;
462	(cs*) archive_system=ut;;
463	(fimm.bccs.uib.no) fimm=true;;
464	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
465	(scirocco) scirocco=true;;
466	esac
467
468
469
470	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
471	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
472	[[ "$afname" = "" ]] && afname=$fname
473
474
475	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
476	if [[ "$run_mode" != "" ]]
477	then
478	input_list="$input_list $run_mode"
479	output_list="$output_list $run_mode"
480	fi
481
482
483	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
484	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
485	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
486	# STARTET)
487	if [[ "$fromhost" = "" ]]
488	then
489	fromhost=$localhost
490	fi
491
492
493	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
494	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
495	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
496	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
497	if [[ -n $host && "$host" != $localhost ]]
498	then
499	do_batch=true
500	do_remote=true
501	case $host in
502	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
503	(*) printf "\n"
504	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
505	printf "\n is not available"
506	locat=nqs; (( iec = 0 )); exit;;
507	esac
508	else
509	host=$localhost
510	fi
511
512
513	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
514	if [[ -n $additional_conditions ]]
515	then
516	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
517	cond1=`echo $additional_conditions \| cut -d" " -f1`
518	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
519	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
520	if [[ -n $dummy ]]
521	then
522	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
523	locat=options; exit
524	fi
525	block=_$cond1
526	[[ -n $cond2 ]] && block=${block}_$cond2
527	fi
528
529
530	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
531	if [[ $run_coupled_model = true ]]
532	then
533
534	if [[ -n $coupled_dist ]]
535	then
536
537	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
538	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
539
540	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
541	then
542
543	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
544	printf "\n PEs (total) : $numprocs"
545	printf "\n PEs (atmosphere): $numprocs_atmos"
546	printf "\n PEs (ocean) : $numprocs_ocean"
547	locat=coupling; exit
548
549	fi
550
551	else
552
553	(( numprocs_ocean = $numprocs / 2 ))
554	(( numprocs_atmos = $numprocs / 2 ))
555
556	fi
557	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
558
559	# GET coupled_mode FROM THE CONFIG FILE
560	line=""
561	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
562	while read line
563	do
564	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
565	then
566	coupled_mode="mpi2"
567	fi
568	done < tmp_mrun
569
570	fi
571
572
573	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
574	# ARCHIVIERUNG FEHLGESCHLAGEN IST
575	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
576	then
577	if [[ $ignore_archive_error = false ]]
578	then
579	printf "\n +++ data archiving of previous run failed"
580	printf "\n see directory \~/job_queue on remote machine"
581	locat=archive; exit
582	else
583	printf "\n +++ warning: data archiving in a previous run failed"
584	printf "\n MRUN continues, trying to get backup copy"
585	fi
586	fi
587
588
589
590	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
591	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
592	if [[ "$read_from_config" = false ]]
593	then
594
595	[[ $silent = false ]] && printf "\n Reading the configuration file... "
596	while read zeile
597	do
598	[[ $silent = false ]] && printf "."
599
600
601	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
602	# ERSETZEN
603	eval zeile=\"$zeile\"
604
605
606	# INTERPRETATION DER ZEILE
607	if [[ "$(echo $zeile)" = "" ]]
608	then
609	# LEERZEILE, KEINE AKTION
610	continue
611
612	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
613	then
614
615	# ZEILE IST KOMMENTARZEILE
616	true
617
618	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
619	then
620
621	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
622	zeile=$(echo $zeile \| cut -c2-)
623	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
624	var=`echo $zeile \| cut -d" " -f1`
625	value=`echo $zeile \| cut -d" " -s -f2`
626	for_host=`echo $zeile \| cut -d" " -s -f3`
627	for_cond1=`echo $zeile \| cut -d" " -s -f4`
628	for_cond2=`echo $zeile \| cut -d" " -s -f5`
629
630	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
631	then
632
633	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
634	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
635	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
636
637
638	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
639	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
640	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
641	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
642	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
643	# KONFIGURATIONSDATEI
644	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
645	then
646	eval $var=\$value
647
648	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
649	if [[ $do_trace = true ]]
650	then
651	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
652	fi
653	fi
654
655	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
656	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
657	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
658	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
659	if [[ $var = host ]]
660	then
661	if [[ -n $host && "$host" != $localhost ]]
662	then
663	do_batch=true
664	do_remote=true
665	case $host in
666	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
667	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
668	printf "\n is not available"
669	locat=nqs; exit;;
670	esac
671	else
672	host=$localhost
673	fi
674	fi
675
676	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
677	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
678	# DEN PROGRAMMEN BENOETIGT WERDEN
679	export $var
680	fi
681
682
683
684
685	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
686	then
687
688	# ZEILE DEFINIERT ERROR-KOMMANDO
689	(( iec = iec + 1 ))
690	zeile=$(echo $zeile \| cut -c4-)
691	err_command[$iec]="$zeile"
692
693	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
694	then
695
696	# ZEILE DEFINIERT INPUT-KOMMANDO
697	(( iic = iic + 1 ))
698	zeile=$(echo $zeile \| cut -c4-)
699	in_command[$iic]="$zeile"
700
701	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
702	then
703
704	# ZEILE DEFINIERT OUTPUT-KOMMANDO
705	(( ioc = ioc + 1 ))
706	zeile=$(echo $zeile \| cut -c4-)
707	out_command[$ioc]="$zeile"
708
709	else
710
711	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
712	# s2a: in/out - Feld
713	# s2b: loc - Feld (optional)
714	# s2c: tr/ar - Feld (optional)
715	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
716	s1=`echo $zeile \| cut -d" " -f1`
717	s2=`echo $zeile \| cut -d" " -s -f2`
718	s2a=$(echo $s2 \| cut -d":" -f1)
719	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
720	then
721	s2b=""
722	s2c=""
723	else
724	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
725	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
726	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
727	fi
728	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
729	s3=`echo $zeile \| cut -d" " -f3`
730	s4=`echo $zeile \| cut -d" " -s -f4`
731	s5=`echo $zeile \| cut -d" " -s -f5`
732	s6=`echo $zeile \| cut -d" " -s -f6`
733
734
735	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
736	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
737	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
738	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
739	# HANDEN SEIN MUSS (D.H. s2b = loc)
740	IFSALT="$IFS"; IFS="$IFS:"
741	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
742	then
743	found=false
744	for actual in $input_list
745	do
746	for formal in $s3
747	do
748	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
749	done
750	done
751	if [[ $found = true ]]
752	then
753	(( iin = iin + 1 ))
754	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
755	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
756	extin[$iin]=$s6
757	fi
758	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
759	then
760	found=false
761	for actual in $output_list
762	do
763	for formal in $s3
764	do
765	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
766	done
767	done
768	if [[ $found = true ]]
769	then
770	(( iout = iout + 1 ))
771	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
772	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
773	fi
774	elif [[ "$s2a" != in && "$s2a" != out ]]
775	then
776	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
777	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
778	locat=connect; exit
779	fi
780	IFS="$IFSALT"
781	fi
782	done < $config_file
783
784	else
785
786
787	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
788	[[ $silent = false ]] && printf "..."
789	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
790	export interpreted_config_file=.icf.$RANDOM
791
792
793
794	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
795	# VERFUEGUNG STELLEN
796	cat > .mrun_environment << %%END%%
797	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
798	config_file = '$config_file', do_remote = '$do_remote',
799	do_trace = '$do_trace', host = '$host',
800	input_list = '$input_list', icf = '$interpreted_config_file',
801	localhost = '$localhost', output_list = '$output_list' /
802
803	%%END%%
804
805	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
806	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
807	mrun_memory=$memory
808	mrun_group_number=$group_number
809	mrun_cpumax=$cpumax
810	mrun_numprocs=$numprocs
811
812	if [[ $localhost_realname = "sx-fep" ]]
813	then
814	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
815	else
816
817	if [[ "$host" != $localhost ]]
818	then
819
820	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
821	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
822	if [[ $? != 0 ]]
823	then
824	printf "\n\n +++ no interpret_config found"
825	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
826	locat=interpret_config; exit
827	fi
828	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
829	$interpret_config_executable
830
831	else
832
833	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
834	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
835	then
836	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
837	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
838	locat=interpret_config; exit
839	else
840	interpret_config${block}.x
841	fi
842
843	fi
844	fi
845	rm .mrun_environment
846
847
848	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
849	chmod u+x $interpreted_config_file
850	export PATH=$PATH:.
851	. $interpreted_config_file
852	rm $interpreted_config_file
853
854
855	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
856	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
857	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
858	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
859	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
860	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
861	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
862
863	fi
864
865
866	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
867	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
868	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
869	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
870	if [[ "$SOURCES_COMPLETE" = "" ]]
871	then
872
873	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
874	# VEREINBART WURDE
875	source_path=""
876	line=""
877	grep "%source_path" $config_file > tmp_mrun
878	while read line
879	do
880	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
881	then
882	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
883	then
884	global_source_path=`echo $line \| cut -d" " -f2`
885	fi
886	fi
887	done < tmp_mrun
888
889	line=""
890	found=false
891	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
892	while read line
893	do
894	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
895	then
896	if [[ $found = true ]]
897	then
898	printf "\n\n +++ more than one source path found in configuration file"
899	printf "\n for local host \"$localhost\" "
900	locat=source_path; exit
901	fi
902	source_path=`echo $line \| cut -d" " -f2`
903	found=true
904	fi
905	done < tmp_mrun
906	rm tmp_mrun
907
908	if [[ "$source_path" = "" ]]
909	then
910	if [[ "$global_source_path" != "" ]]
911	then
912	source_path=$global_source_path
913	else
914	printf "\n\n +++ no source path found in configuration file"
915	printf "\n for local host \"$localhost\" "
916	locat=source_path; exit
917	fi
918	fi
919	eval source_path=$source_path
920
921	if [[ ! -d $source_path ]]
922	then
923	printf "\n\n +++ source path \"$source_path\" on local host"
924	printf "\n \"$localhost\" does not exist"
925	locat=source_path; exit
926	fi
927
928	fi
929
930
931	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
932	# DURCH OPTION -G MITGETEILT)
933	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
934	then
935	global_revision=`svnversion $source_path 2>/dev/null`
936	global_revision="Rev: $global_revision"
937	fi
938
939
940	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
941	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
942	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
943	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
944	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
945	if [[ -n $host && "$host" != $localhost ]]
946	then
947	do_batch=true
948	do_remote=true
949	case $host in
950	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
951	(*) printf "\n"
952	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
953	printf "\n is not available"
954	locat=nqs; (( iec = 0 )); exit;;
955	esac
956	else
957	host=$localhost
958	fi
959
960
961	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
962	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
963	then
964
965	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
966	if [[ ! -n $numprocs ]]
967	then
968	printf "\n"
969	printf "\n +++ option \"-K parallel\" requires additional specification"
970	printf "\n of the number of processors to be used by"
971	printf "\n mrun-option \"-X\" or by environment-variable"
972	printf "\n \"numprocs\" in the configuration file"
973	locat=numprocs; (( iec = 0 )); exit
974	fi
975
976	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
977	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
978	# GESAMTPROZESSORANZAHL IST
979	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
980	then
981	printf "\n"
982	printf "\n +++ option \"-T\" (tasks per node) is missing"
983	printf "\n set -T option or define tasks_per_node in the config file"
984	locat=tasks_per_node; (( iec = 0 )); exit
985	fi
986	if [[ $host != lcflow && $host != lcxt5m ]]
987	then
988	(( ival = $tasks_per_node ))
989	(( pes = numprocs ))
990	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
991	# then
992	# (( pes = pes - 1 ))
993	# fi
994	(( ii = pes / ival ))
995	if (( pes - ii * ival > 0 ))
996	then
997	printf "\n"
998	printf "\n +++ tasks per node (option \"-T\") must be an integral"
999	printf "\n divisor of the total number of processors (option \"-X\")"
1000	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1001	locat=tasks_per_node; (( iec = 0 )); exit
1002	fi
1003	fi
1004
1005
1006	# IBMY HAT NUR EINEN KNOTEN
1007	if [[ $host = ibmy ]]
1008	then
1009	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1010	then
1011	printf "\n"
1012	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1013	printf "\n total number of processors (option \"-X\")"
1014	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1015	locat=tasks_per_node; (( iec = 0 )); exit
1016	fi
1017	fi
1018
1019
1020	# SETTINGS FOR SUBJOB-COMMAND
1021	TOPT="-T $tasks_per_node"
1022	OOPT="-O $threads_per_task"
1023
1024	# GESAMTZAHL DER KNOTEN BESTIMMEN
1025	if [[ "$tasks_per_node" != "" ]]
1026	then
1027	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1028	fi
1029
1030	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1031	# SETZEN
1032	if [[ $node_usage = default ]]
1033	then
1034	if [[ $host = ibms ]]
1035	then
1036	node_usage=shared
1037	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1038	then
1039	node_usage=singlejob
1040	else
1041	node_usage=not_shared
1042	fi
1043	fi
1044
1045	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1046	then
1047	printf "\n"
1048	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1049	printf "\n \"shared\" or \"not_shared\""
1050	locat=tasks_per_node; (( iec = 0 )); exit
1051	fi
1052
1053	fi
1054
1055	# PRUEFEN, OB HOSTFILE EXISTIERT
1056	if [[ -n $hostfile ]]
1057	then
1058	if [[ ! -f $hostfile ]]
1059	then
1060	printf "\n"
1061	printf "\n +++ hostfile \"$hostfile\" does not exist"
1062	locat=hostfile; exit
1063	fi
1064	fi
1065
1066	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1067	if [[ $host = ibmy && $do_remote = false ]]
1068	then
1069	if [[ ! -f $HOME/.rhosts ]]
1070	then
1071	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1072	printf "\n\n *** file:"
1073	printf "\n $HOME/.rhosts"
1074	printf "\n was created\n"
1075	fi
1076	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1077	then
1078	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1079	printf "\n\n *** file:"
1080	printf "\n $HOME/.rhosts"
1081	printf "\n was extended by the name of the current host\n"
1082	fi
1083	fi
1084
1085
1086	# Set default value for the maximum number of parallel io streams
1087	if [[ "$maximum_parallel_io_streams" = "" ]]
1088	then
1089	maximum_parallel_io_streams=$numprocs
1090	fi
1091
1092
1093	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1094	if [[ $queue = none ]]
1095	then
1096	case $host in
1097	(ibmh) queue=no_class;;
1098	(ibmkisti) queue=class.32plus;;
1099	(ibmy) queue=parallel;;
1100	(lckiaps) queue=normal;;
1101	(lckyoto) queue=ph;;
1102	(lcsgib) queue=testq;;
1103	(lcsgih) queue=testq;;
1104	(lctit) queue=S;;
1105	(nech) queue=none;;
1106	(necriam) queue=SP;;
1107	(unics) queue=unics;;
1108	esac
1109	fi
1110
1111
1112	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1113	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1114	# ERMITTELN
1115	(( i = 0 ))
1116	while (( i < iin ))
1117	do
1118	(( i = i + 1 ))
1119	(( maxcycle = 0 ))
1120
1121	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1122	if [[ "${actionin[$i]}" = di ]]
1123	then
1124	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1125	# REM-MASCHINE AUSWERTEN
1126	eval filename=${pathin[$i]}/${endin[$i]}
1127	else
1128	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1129	# REM-MASCHINE AUSWERTEN
1130	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1131	fi
1132	eval pathname=${pathin[$i]}
1133
1134	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1135	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1136	then
1137	filename_input=$filename
1138	fi
1139
1140	# PRUEFEN AUF VORHANDENSEIN
1141	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1142	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1143	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1144	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1145	then
1146	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1147	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1148	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1149	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1150	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1151	if [[ "${transin[$i]}" != "locopt" ]]
1152	then
1153	printf "\n\n +++ INPUT-file: "
1154	if [[ "${extin[$i]}" = "" ]]
1155	then
1156	printf "\n $filename"
1157	else
1158	printf "\n $filename.${extin[$i]}"
1159	fi
1160	printf "\n does not exist\n"
1161	locat=input; exit
1162	else
1163	transin[$i]="unavailable"
1164	fi
1165	else
1166
1167	# ZYKLUSNUMMER FESTSTELLEN
1168	ls -1 -d $filename > filelist 2>/dev/null
1169	ls -1 -d $filename.* >> filelist 2>/dev/null
1170	while read zeile
1171	do
1172	cycle=$(print $zeile \| cut -f2 -d".")
1173	if [[ "$cycle" = "$zeile" ]]
1174	then
1175	(( icycle = 0 ))
1176	elif [[ "$cycle" = "${extin[$i]}" ]]
1177	then
1178	(( icycle = 0 ))
1179	else
1180	(( icycle = $cycle ))
1181	fi
1182	if (( icycle > maxcycle ))
1183	then
1184	(( maxcycle = icycle ))
1185	file_to_be_used=$zeile
1186	fi
1187	done <filelist
1188	rm filelist
1189
1190	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1191	if (( maxcycle > 0 ))
1192	then
1193	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1194	then
1195	filename=${filename}.$maxcycle.${extin[$i]}
1196	else
1197	filename=${filename}.$maxcycle
1198	fi
1199	else
1200	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1201	then
1202	filename=${filename}.${extin[$i]}
1203	fi
1204	fi
1205
1206	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1207	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1208	absnamein[$i]=$filename
1209	if (( maxcycle > 0 ))
1210	then
1211	if [[ "${actionin[$i]}" = di ]]
1212	then
1213	frelin[$i]=${endin[$i]}.$maxcycle
1214	else
1215	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1216	fi
1217	else
1218	if [[ "${actionin[$i]}" = di ]]
1219	then
1220	frelin[$i]=${endin[$i]}
1221	else
1222	frelin[$i]=${afname}${endin[$i]}
1223	fi
1224	fi
1225
1226	fi
1227	done
1228
1229	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1230	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1231	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1232	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1233	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1234	(( i = 0 ))
1235	while (( i < iout ))
1236	do
1237	(( i = i + 1 ))
1238	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1239	then
1240	if [[ "${actionout[$i]}" = tr ]]
1241	then
1242	actionout[$i]=""
1243	elif [[ "${actionout[$i]}" = trpe ]]
1244	then
1245	actionout[$i]=pe
1246	elif [[ "${actionout[$i]}" = tra ]]
1247	then
1248	actionout[$i]=a
1249	fi
1250	(( maxcycle = 0 ))
1251	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1252	eval catalogname=${pathout[$i]}
1253	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1254	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1255	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1256	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1257	then
1258
1259	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1260	if cat /dev/null > $filename
1261	then
1262	rm $filename
1263	else
1264
1265	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1266	if [[ ! -d $catalogname ]]
1267	then
1268	if mkdir -p $catalogname
1269	then
1270	printf "\n\n *** directory:"
1271	printf "\n $catalogname"
1272	printf "\n was created\n"
1273	else
1274	printf "\n\n +++ OUTPUT-file:"
1275	printf "\n $filename"
1276	printf "\n cannot be created, because directory does not exist"
1277	printf "\n and cannot be created either"
1278	printf "\n"
1279	locat=output ; exit
1280	fi 2>/dev/null
1281	else
1282	printf "\n\n +++ OUTPUT-file:"
1283	printf "\n $filename"
1284	printf "\n cannot be created, although directory exists"
1285	printf "\n"
1286	locat=output ; exit
1287	fi
1288	fi 2>/dev/null
1289	else
1290
1291	# ZYKLUSNUMMER FESTSTELLEN
1292	ls -1 -d $filename > filelist 2>/dev/null
1293	ls -1 -d $filename.* >> filelist 2>/dev/null
1294	while read zeile
1295	do
1296	cycle=$(print $zeile \| cut -f2 -d".")
1297	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1298	then
1299	(( icycle = 1 ))
1300	else
1301	(( icycle = $cycle + 1 ))
1302	fi
1303	if (( icycle > maxcycle ))
1304	then
1305	(( maxcycle = icycle ))
1306	fi
1307	done <filelist
1308	rm filelist
1309	fi
1310
1311	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1312	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1313	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1314	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1315	if [[ "${actionout[$i]}" != a ]]
1316	then
1317	if (( maxcycle > 0 ))
1318	then
1319	filename=${filename}.$maxcycle
1320	if cat /dev/null > $filename
1321	then
1322	rm $filename
1323	else
1324	printf "\n +++ OUTPUT-file:"
1325	printf "\n $filename"
1326	printf "\n cannot be created"
1327	locat=output ; exit
1328	fi
1329	fi
1330	else
1331	(( maxcycle = maxcycle - 1 ))
1332	if (( maxcycle > 0 ))
1333	then
1334	filename=${filename}.$maxcycle
1335	fi
1336	fi
1337
1338	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1339	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1340	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1341	pathout[$i]=$filename
1342	if (( maxcycle > 0 ))
1343	then
1344	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1345	else
1346	frelout[$i]=${fname}${endout[$i]}
1347	fi
1348
1349	fi
1350	done
1351
1352
1353	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1354	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1355	then
1356	if [[ "$dvr_inc" = "" ]]
1357	then
1358	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1359	printf "\n This is required for the dvrp_graphics package.\n"
1360	locat=dvr; exit
1361	fi
1362	if [[ "$dvr_lib" = "" ]]
1363	then
1364	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1365	printf "\n This is required for the dvrp_graphics package.\n"
1366	locat=dvr; exit
1367	fi
1368	fi
1369
1370
1371	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1372	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1373	# UEBERSETZT ZU WERDEN)
1374	if [[ "$mainprog" = "" && "$executable" = "" ]]
1375	then
1376	printf "\n +++ neither main program nor executable defined"
1377	locat=source; exit
1378	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1379	then
1380	printf "\n +++ main program as well as executable defined"
1381	locat=source; exit
1382	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1383	then
1384	do_compile=false
1385	fi
1386
1387
1388	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1389	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1390	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1391	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1392	then
1393	rm -rf SOURCES_FOR_RUN_$fname
1394	mkdir SOURCES_FOR_RUN_$fname
1395	fi
1396
1397
1398	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1399	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1400	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1401	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1402	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1403	then
1404
1405	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1406
1407	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1408	then
1409
1410	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1411	source_list=""
1412	cd $source_path
1413
1414
1415	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1416	if [[ ! -d .svn ]]
1417	then
1418	printf "\n\n +++ source directory"
1419	printf "\n \"$source_path\" "
1420	printf "\n is not under control of \"subversion\"."
1421	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1422	fi
1423
1424
1425	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1426	Filenames=""
1427	svn status > tmp_mrun
1428	while read line
1429	do
1430	firstc=`echo $line \| cut -c1`
1431	if [[ $firstc = M \|\| $firstc = "?" ]]
1432	then
1433	Name=`echo "$line" \| cut -c8-`
1434	extension=`echo $Name \| cut -d. -f2`
1435	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1436	then
1437	Filenames="$Filenames "$Name
1438	fi
1439	fi
1440	done < tmp_mrun
1441
1442
1443	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1444	for dateiname in $Filenames
1445	do
1446	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1447	source_list=$source_list"$dateiname "
1448	done
1449
1450	cd - > /dev/null
1451
1452
1453	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1454	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1455	# VORHANDEN
1456	elif [[ "$source_list" != "" && $restart_run != true ]]
1457	then
1458
1459	cd $source_path
1460
1461	for filename in $source_list
1462	do
1463
1464	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1465	if [[ $(print $filename \| grep -c "/") != 0 ]]
1466	then
1467	printf "\n +++ source code file: $filename"
1468	printf "\n must not contain (\"/\") "
1469	locat=source; exit
1470	fi
1471
1472	if [[ ! -f $filename ]]
1473	then
1474	printf "\n +++ source code file: $filename"
1475	printf "\n does not exist"
1476	locat=source; exit
1477	else
1478	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1479	fi
1480
1481	done
1482
1483	cd - > /dev/null
1484
1485	fi
1486
1487
1488	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1489	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1490	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1491	if [[ $restart_run != true ]]
1492	then
1493
1494	if [[ ! -f "$source_path/$mainprog" ]]
1495	then
1496	printf "\n\n +++ main program: $mainprog"
1497	printf "\n does not exist in source directory"
1498	printf "\n \"$source_path\"\n"
1499	locat=source; exit
1500	else
1501	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1502	then
1503	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1504	source_list=${mainprog}" $source_list"
1505	fi
1506	fi
1507	fi
1508
1509
1510	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1511	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1512	if [[ "$restart_run" != true ]]
1513	then
1514	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1515	if [[ ! -f $makefile ]]
1516	then
1517	printf "\n +++ file \"$makefile\" does not exist"
1518	locat=make; exit
1519	else
1520	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1521	fi
1522	fi
1523
1524
1525	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1526	if [[ $restart_run != true && "$add_source_path" != "" ]]
1527	then
1528
1529	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1530	if [[ ! -d $add_source_path ]]
1531	then
1532	printf "\n\n +++ WARNING: additional source code directory"
1533	printf "\n \"$add_source_path\" "
1534	printf "\n does not exist or is not a directory."
1535	printf "\n No source code will be used from this directory!\n"
1536	add_source_path=""
1537	if [[ $silent == false ]]
1538	then
1539	sleep 3
1540	fi
1541	else
1542
1543	cd $add_source_path
1544	found=false
1545
1546	Names=$(ls -1 *.f90 2>&1)
1547	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1548	Names=$(ls -1 *.F90 2>&1)
1549	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1550	Names=$(ls -1 *.F 2>&1)
1551	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1552	Names=$(ls -1 *.f 2>&1)
1553	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1554	Names=$(ls -1 *.c 2>&1)
1555	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1556
1557	cd - > /dev/null
1558	cd SOURCES_FOR_RUN_$fname
1559
1560	# COPY MAKEFILE IF EXISTING
1561	if [[ -f $add_source_path/Makefile ]]
1562	then
1563	printf "\n\n *** user Makefile from directory"
1564	printf "\n \"$add_source_path\" is used \n"
1565	if [[ $silent == false ]]
1566	then
1567	sleep 1
1568	fi
1569	cp $add_source_path/Makefile .
1570	fi
1571
1572	for dateiname in $AddFilenames
1573	do
1574	if [[ -f $dateiname ]]
1575	then
1576	printf "\n +++ source code file \"$dateiname\" found in additional"
1577	printf "\n source code directory \"$add_source_path\" "
1578	printf "\n but was also given with option \"-s\" which means that it should be taken"
1579	printf "\n from directory \"$source_path\"."
1580	locat=source; exit
1581	fi
1582
1583	cp $add_source_path/$dateiname .
1584	source_list="$source_list $dateiname"
1585
1586	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1587	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1588	then
1589	printf "\n\n +++ user file \"$dateiname\" "
1590	printf "\n is not listed in Makefile \n"
1591	locat=source; exit
1592	else
1593
1594	# Default User-Interface von der Liste entfernen, falls Datei
1595	# ein User-Interface enthaelt
1596	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1597	# then
1598	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1599	# then
1600	# rm -rf user_interface.f90
1601	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1602	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1603	# printf "\n since a user-interface is found in file"
1604	# printf "\n \"$add_source_path/$dateiname\" \n"
1605	# sleep 3
1606	# else
1607	if [[ $found = false ]]
1608	then
1609	found=true
1610	printf "\n\n *** following user file(s) added to the"
1611	printf " files to be translated:\n "
1612	fi
1613	printf "$dateiname "
1614	if [[ $silent == false ]]
1615	then
1616	sleep 0.5
1617	fi
1618
1619	fi
1620	done
1621	[[ $found = true ]] && printf "\n"
1622	cd - > /dev/null
1623	fi
1624	fi
1625
1626
1627	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1628	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1629	if [[ $restart_run != true && -n $package_list ]]
1630	then
1631
1632	cd $source_path
1633
1634	for package in $package_list
1635	do
1636
1637	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1638
1639	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1640	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1641	# LIEFERT
1642	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1643
1644
1645	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1646	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1647	for source_list_name in $package_source_list
1648	do
1649	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1650	then
1651
1652	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1653	ending=`echo $source_list_name \| cut -f2 -d.`
1654	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1655	then
1656	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1657	source_list="$source_list $source_list_name"
1658	fi
1659	fi
1660	done
1661	done
1662
1663	cd - > /dev/null
1664	fi
1665
1666
1667	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1668	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1669	# if [[ "$restart_run" != true ]]
1670	# then
1671	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1672	# if [[ ! -f $makefile ]]
1673	# then
1674	# printf "\n +++ file \"$makefile\" does not exist"
1675	# locat=make; exit
1676	# else
1677	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1678	# fi
1679	# fi
1680
1681	fi # do_compile=true
1682
1683
1684	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1685	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1686	if [[ $do_compile = true ]]
1687	then
1688
1689	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1690	# ZUSAMMENSETZEN
1691	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1692	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1693	then
1694	cpp_options="${cpp_options},-D__ibm=__ibm"
1695	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1696	then
1697	cpp_options="$cpp_options -D__nec"
1698	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1699	then
1700	cpp_options="$cpp_options -D__lc"
1701	else
1702	cpp_options="$cpp_options -D__$localhost"
1703	fi
1704
1705	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1706	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1707	then
1708	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1709	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1710	else
1711	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1712	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1713	fi
1714
1715	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1716	if [[ -n $package_list ]]
1717	then
1718	for package in $package_list
1719	do
1720	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1721	then
1722	if [[ $package != "dvrp_graphics+1PE" ]]
1723	then
1724	cpp_options="${cpp_options},-D__$package=__$package"
1725	else
1726	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1727	export use_seperate_pe_for_dvrp_output=true
1728	fi
1729	else
1730	if [[ $package != "dvrp_graphics+1PE" ]]
1731	then
1732	cpp_options="$cpp_options -D__$package"
1733	else
1734	cpp_options="$cpp_options -D__dvrp_graphics"
1735	export use_seperate_pe_for_dvrp_output=true
1736	fi
1737	fi
1738	done
1739	fi
1740
1741	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1742	if [[ -n $cpp_opts ]]
1743	then
1744	for popts in $cpp_opts
1745	do
1746	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1747	then
1748	cpp_options="${cpp_options},-D__$popts=__$popts"
1749	else
1750	cpp_options="$cpp_options -D__$popts"
1751	fi
1752	done
1753	fi
1754
1755	else
1756
1757
1758	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1759	if [[ $do_remote = false ]]
1760	then
1761	if [[ ! -f $executable ]]
1762	then
1763	printf "\n +++ executable file: $executable"
1764	printf "\n does not exist"
1765	locat=executable; exit
1766	fi
1767	fi
1768	fi
1769
1770
1771	# JOBMODUS FESTSTELLEN
1772	if [[ "$ENVIRONMENT" = BATCH ]]
1773	then
1774	jobmo=BATCH
1775	else
1776	jobmo=INTERACTIVE
1777	fi
1778
1779
1780	# no interactive runs on lctit
1781	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1782	then
1783	printf "\n +++ no interactive runs allowed on host \"$host\" "
1784	printf "\n please submit batch job using mrun option \"-b\" \n"
1785	locat=normal; exit
1786	fi
1787
1788
1789	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1790	# DURCH BENUTZER ANDERWEITIG VEREINBART
1791	if [[ "$compiler_name" = "" ]]
1792	then
1793
1794	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1795	locat=compiler_name; exit
1796
1797	fi
1798
1799
1800	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1801	[[ $localhost = necriam ]] && compiler_name=mpif90
1802
1803
1804
1805	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1806	kennung=$RANDOM
1807	if [[ "$tmp_user_catalog" = "" ]]
1808	then
1809	if [[ $localhost = ibmh ]]
1810	then
1811	tmp_user_catalog=$SCRATCH
1812	elif [[ $localhost = nech ]]
1813	then
1814	tmp_user_catalog=$WRKSHR
1815	else
1816	tmp_user_catalog=/tmp
1817	fi
1818	fi
1819	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1820
1821
1822	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1823	# BESTIMMEN
1824	if [[ "$tmp_data_catalog" = "" ]]
1825	then
1826	if [[ $localhost = nech ]]
1827	then
1828	tmp_data_catalog=$WRKSHR/mrun_restart_data
1829	else
1830	tmp_data_catalog=/tmp/mrun_restart_data
1831	fi
1832	fi
1833
1834
1835	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1836	# ERSETZEN
1837	if [[ $do_remote = false && $do_compile = true ]]
1838	then
1839	eval fopts=\"$fopts\"
1840	eval lopts=\"$lopts\"
1841	fi
1842
1843
1844
1845	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1846	fopts="$fopts $netcdf_inc $dvr_inc"
1847	lopts="$lopts $netcdf_lib $dvr_lib"
1848	ROPTS="$ropts"
1849	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb ) && -n $numprocs ]]
1850	then
1851	XOPT="-X $numprocs"
1852	fi
1853
1854
1855
1856	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1857	# GRAMM BENOETIGT
1858	done=false
1859	while [[ $done = false ]]
1860	do
1861	cputime=$cpumax
1862	if (( $cputime == 0 ))
1863	then
1864	if [[ $do_batch = true ]]
1865	then
1866	printf "\n +++ cpu-time is undefined"
1867	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1868	printf "\n >>> "
1869	read cputime 1>/dev/null 2>&1
1870	else
1871	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1872	fi
1873	else
1874	done=true
1875	fi
1876	cpumax=$cputime
1877	done
1878
1879	(( minuten = cputime / 60 ))
1880	(( sekunden = cputime - minuten * 60 ))
1881
1882
1883	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1884	if [[ $do_batch = true ]]
1885	then
1886	done=false
1887	while [[ $done = false ]]
1888	do
1889	if (( memory == 0 ))
1890	then
1891	printf "\n +++ memory demand is undefined"
1892	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1893	printf "\n >>> "
1894	read memory 1>/dev/null 2>&1
1895	else
1896	done=true
1897	fi
1898	done
1899	fi
1900
1901
1902	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1903	if [[ $do_remote = true && -z $remote_username ]]
1904	then
1905	while [[ -z $remote_username ]]
1906	do
1907	printf "\n +++ username on remote host \"$host\" is undefined"
1908	printf "\n >>> Please type username:"
1909	printf "\n >>> "
1910	read remote_username
1911	done
1912	mc="$mc -u$remote_username"
1913	fi
1914
1915	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1916	if [[ "$login_init_cmd" != "" ]]
1917	then
1918	export init_cmds="${login_init_cmd};"
1919	fi
1920
1921
1922	# set module load command and export for subjob
1923	if [[ "$modules" != "" ]]
1924	then
1925	if [[ $host = lctit ]]
1926	then
1927	export module_calls=". $modules"
1928	else
1929	export module_calls="module load ${modules};"
1930	fi
1931	fi
1932
1933	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1934	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1935	then
1936	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1937	then
1938	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1939	fi
1940	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1941	# then
1942	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1943	# echo "*** module_calls = $module_calls"
1944	# fi
1945	fi
1946
1947
1948	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
1949	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1950	then
1951	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
1952	then
1953	mpilib=mpt
1954	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
1955	then
1956	mpilib=mvapich
1957	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
1958	then
1959	mpilib=impi
1960	fi
1961	fi
1962
1963
1964
1965	###########################################################################
1966	# HEADER-AUSGABE
1967	###########################################################################
1968
1969
1970	calltime=$(date)
1971	printf "\n"
1972	# [[ $silent = false ]] && clear
1973	printf "#--------------------------------------------------------------# \n"
1974	printf "\| $version$calltime \| \n"
1975	printf "\| \| \n"
1976	spalte1="called on:"; spalte2=$localhost_realname
1977	printf "\| $spalte1$spalte2 \| \n"
1978	if [[ $local_compile = false ]]
1979	then
1980	if [[ $do_remote = true ]]
1981	then
1982	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
1983	else
1984	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
1985	fi
1986	else
1987	spalte1="compiling test only!"; spalte2=""
1988	fi
1989	printf "\| $spalte1$spalte2 \| \n"
1990	if [[ -n $numprocs ]]
1991	then
1992	spalte1="number of PEs:"; spalte2=$numprocs
1993	printf "\| $spalte1$spalte2 \| \n"
1994	fi
1995	if [[ -n $tasks_per_node ]]
1996	then
1997	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
1998	printf "\| $spalte1$spalte2 \| \n"
1999	fi
2000	if [[ $maximum_parallel_io_streams != $numprocs ]]
2001	then
2002	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2003	printf "\| $spalte1$spalte2 \| \n"
2004	fi
2005	if [[ $use_openmp = true ]]
2006	then
2007	spalte1="threads per task:"; spalte2="$threads_per_task"
2008	printf "\| $spalte1$spalte2 \| \n"
2009	fi
2010	printf "\| \| \n"
2011	if [[ $do_compile = true ]]
2012	then
2013	if [[ "$mopts" != "" ]]
2014	then
2015	spalte1="make options:"; spalte2=$mopts
2016	printf "\| $spalte1$spalte2 \| \n"
2017	zeile=$(echo "$mopts" \| cut -c41-)
2018	while [[ "$zeile" != "" ]]
2019	do
2020	spalte1=""
2021	spalte2=$zeile
2022	printf "\| $spalte1$spalte2 \| \n"
2023	zeile=$(echo "$zeile" \| cut -c41-)
2024	done
2025	fi
2026
2027	spalte1="cpp directives:"; spalte2=$cpp_options
2028	printf "\| $spalte1$spalte2 \| \n"
2029	zeile=$(echo "$cpp_options" \| cut -c41-)
2030	while [[ "$zeile" != "" ]]
2031	do
2032	spalte1=""
2033	spalte2=$zeile
2034	printf "\| $spalte1$spalte2 \| \n"
2035	zeile=$(echo "$zeile" \| cut -c41-)
2036	done
2037
2038	spalte1="compiler options:"; spalte2="$fopts"
2039	printf "\| $spalte1$spalte2 \| \n"
2040	zeile=$(echo "$fopts" \| cut -c41-)
2041	while [[ "$zeile" != "" ]]
2042	do
2043	spalte1=""
2044	spalte2=$zeile
2045	printf "\| $spalte1$spalte2 \| \n"
2046	zeile=$(echo "$zeile" \| cut -c41-)
2047	done
2048
2049	spalte1="linker options:"; spalte2=$lopts
2050	printf "\| $spalte1$spalte2 \| \n"
2051	zeile=$(echo "$lopts" \| cut -c41-)
2052	while [[ "$zeile" != "" ]]
2053	do
2054	spalte1=""
2055	spalte2=$zeile
2056	printf "\| $spalte1$spalte2 \| \n"
2057	zeile=$(echo "$zeile" \| cut -c41-)
2058	done
2059
2060	spalte1="modules to be load:"; spalte2=$modules
2061	printf "\| $spalte1$spalte2 \| \n"
2062	zeile=$(echo "$modules" \| cut -c41-)
2063	while [[ "$zeile" != "" ]]
2064	do
2065	spalte1=""
2066	spalte2=$zeile
2067	printf "\| $spalte1$spalte2 \| \n"
2068	zeile=$(echo "$zeile" \| cut -c41-)
2069	done
2070
2071	spalte1="main program":; spalte2=$mainprog
2072	printf "\| $spalte1$spalte2 \| \n"
2073	else
2074	spalte1=executable:; spalte2=$executable
2075	printf "\| $spalte1$spalte2 \| \n"
2076	fi
2077	printf "\| \| \n"
2078	spalte1="base name of files":; spalte2=$fname
2079	printf "\| $spalte1$spalte2 \| \n"
2080	if [[ $fname != $afname ]]
2081	then
2082	spalte1="base name of input files":; spalte2=$afname
2083	printf "\| $spalte1$spalte2 \| \n"
2084	fi
2085	spalte1="INPUT control list":; spalte2=$input_list
2086	printf "\| $spalte1$spalte2 \| \n"
2087	spalte1="OUTPUT control list":; spalte2=$output_list
2088	printf "\| $spalte1$spalte2 \| \n"
2089
2090	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2091	then
2092	spalte1="memory demand / PE":; spalte2="$memory MB"
2093	printf "\| $spalte1$spalte2 \| \n"
2094	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2095	printf "\| $spalte1$spalte2 \| \n"
2096	fi
2097
2098	if [[ $do_compile = true ]]
2099	then
2100	printf "\| \| \n"
2101	printf "\| Files to be compiled: \| \n"
2102	zeile=$source_list
2103	while [[ "$zeile" != "" ]]
2104	do
2105	spalte3=$zeile
2106	printf "\| $spalte3 \| \n"
2107	zeile=$(echo "$zeile" \| cut -c61-)
2108	done
2109	fi
2110	printf "#--------------------------------------------------------------#"
2111
2112
2113
2114	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2115	if [[ $do_trace = true ]]
2116	then
2117	(( i = 0 ))
2118	while (( i < iin ))
2119	do
2120	(( i = i + 1 ))
2121	if (( i == 1 ))
2122	then
2123	printf "\n\n >>> INPUT-file assignments:\n"
2124	fi
2125	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2126	done
2127	(( i = 0 ))
2128	while (( i < iout ))
2129	do
2130	(( i = i + 1 ))
2131	if (( i == 1 ))
2132	then
2133	printf "\n\n >>> OUTPUT-file assignments:\n"
2134	fi
2135	printf "\n ${localout[$i]} : ${pathout[$i]}"
2136	done
2137	(( i = 0 ))
2138	while (( i < iic ))
2139	do
2140	(( i = i + 1 ))
2141	if (( i == 1 ))
2142	then
2143	printf "\n\n >>> INPUT-commands:\n"
2144	fi
2145	printf "\n ${in_command[$i]}"
2146	done
2147	(( i = 0 ))
2148	while (( i < ioc ))
2149	do
2150	(( i = i + 1 ))
2151	if (( i == 1 ))
2152	then
2153	printf "\n\n >>> OUTPUT-commands:\n"
2154	fi
2155	printf "\n ${out_command[$i]}"
2156	done
2157	fi
2158
2159
2160	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2161	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2162	then
2163	antwort=dummy
2164	printf "\n\n"
2165	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2166	do
2167	printf " >>> everything o.k. (y/n) ? "
2168	read antwort
2169	done
2170	if [[ $antwort = n \|\| $antwort = N ]]
2171	then
2172	locat=user_abort; (( iec = 0 )); exit
2173	fi
2174	if [[ $do_batch = true ]]
2175	then
2176	printf " >>> batch-job will be created and submitted"
2177	else
2178	if [[ $local_compile = false ]]
2179	then
2180	printf " >>> MRUN will now continue to execute on this machine"
2181	else
2182	printf " >>> a test compilation will now be carried out on this machine"
2183	fi
2184	fi
2185	fi
2186
2187	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2188
2189	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2190	check_depository="${working_directory}/trunk/UTIL"
2191	check_sources="${working_directory}/tmp_check_namelist_files"
2192	skip_check=false
2193
2194	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2195	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2196	then
2197	skip_check=true
2198	reason="run on remote host or parameter file check has not been compiled."
2199	fi
2200	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2201	then
2202	skip_check=true
2203	reason="parameter file check has not been compiled."
2204	fi
2205
2206	#CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2207	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2208	then
2209	skip_check=true
2210	reason="serial run."
2211	fi
2212
2213	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
2214	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2215	if [[ $check_namelist_files == false ]]
2216	then
2217	skip_check=true
2218	reason="-z option set."
2219	fi
2220
2221	if [[ $fromhost != $localhost ]]
2222	then
2223	skip_check=true
2224	reason="submitting host is local host."
2225	fi
2226
2227	if [[ $run_coupled_model == true ]]
2228	then
2229	skip_check=true
2230	reason="coupled run."
2231	fi
2232
2233	if [[ $restart_run == true ]]
2234	then
2235	skip_check=true
2236	reason="restart run."
2237
2238	fi
2239
2240	#SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2241	((last_char = `echo $filename_input \| wc -c` - 1))
2242	last_char=`echo $filename_input \|cut -c$last_char`
2243	if [[ "$last_char" == "f" ]]
2244	then
2245	skip_check=true
2246	reason="restart run."
2247	fi
2248
2249	if [[ $skip_check == false ]]
2250	then
2251
2252	tmp_check=${working_directory}/tmp_check
2253
2254	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2255	# NOT NECESSARILY REQUIRED
2256	line=""
2257	found=false
2258	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2259	while read line1
2260	do
2261	line="$line1"
2262	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2263	then
2264	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2265	found=true
2266	fi
2267	done < $tmp_check
2268
2269	if [[ $found = false ]]
2270	then
2271	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2272	fi
2273
2274	rm -rf ${working_directory}/tmp_check
2275
2276	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2277	for item in $input_list
2278	do
2279	if [[ "$item" == "restart" ]]
2280	then
2281	check_restart=1
2282	else
2283	check_restart=0
2284	fi
2285	done
2286
2287	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2288	if [[ (! -f $filename_input) && ( "$filename_input" != "") ]]
2289	then
2290	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2291	locat=check_namelist; exit
2292	fi
2293
2294	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2295	if [[ $check_restart == 1 ]]
2296	then
2297
2298
2299
2300	filenamef="${filename_input}f"
2301	if [[ ! -f $filenamef ]]
2302	then
2303	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2304	check_restart=0
2305	answer=dummy
2306	printf "\n\n"
2307
2308	if [[ $silent == false ]]
2309	then
2310	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2311	do
2312	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2313	read answer
2314	done
2315	if [[ $answer = a \|\| $answer = A ]]
2316	then
2317	printf "\n +++ Aborting...."
2318	locat=normal; exit
2319	fi
2320	fi
2321	else
2322	check_restart=1
2323	fi
2324	fi
2325
2326	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2327	mkdir $check_sources
2328	cd $check_sources
2329
2330
2331	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2332	if [[ -d $add_source_path ]]
2333	then
2334	printf "\n\n *** copying files from $check_depository"
2335	cp $check_depository/check_namelist_files.tar ./
2336
2337	printf "\n\n *** untar of makefile and source files in $check_sources"
2338	tar -xf check_namelist_files.tar > /dev/null 2>&1
2339
2340	printf "\n\n *** adding user code."
2341	cp $add_source_path/* ./
2342	touch check_namelist_files.f90
2343
2344	# GET COMPILER OPTIONS AND PERFORM MAKE
2345	printf "\n\n *** compiling code if necessary...\n"
2346
2347	# workaround for batch jobs on local machine (lcxe6)
2348	if [[ $do_batch == true && $do_remote == false ]]
2349	then
2350	eval $init_cmds
2351	fi
2352
2353	# GET CHECK OPTIONS
2354	line=""
2355	found=false
2356
2357	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2358
2359	while read line1
2360	do
2361
2362	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2363	then
2364	line="$line1"
2365	fi
2366
2367	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2368	then
2369	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2370	line="$line "
2371	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2372	found=true
2373	fi
2374
2375	done < $tmp_check
2376	copts_check="$copts_check -D__check -D__parallel"
2377
2378	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2379
2380	# GET MAKE OUTPUT
2381	if [[ $? != 0 ]]
2382	then
2383	printf "\n +++ error during make."
2384	answer=dummy
2385	printf "\n\n"
2386	if [[ $silent == false ]]
2387	then
2388	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2389	do
2390	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2391	read answer
2392	done
2393	if [[ $answer = a \|\| $answer = A ]]
2394	then
2395	printf "\n +++ Aborting..."
2396	rm -rf $check_sources
2397	locat=normal; exit
2398	else
2399	skip_check=true
2400	fi
2401	else
2402	skip_check=true
2403	fi
2404	fi
2405	else
2406	cp $PALM_BIN/check_namelist_files.x ./
2407	fi
2408
2409	cp $filename_input ./PARIN
2410	if [[ $check_restart == 1 ]]
2411	then
2412	cp $filenamef ./PARINF
2413	fi
2414
2415	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2416	then
2417	printf "\n *** adding topography data"
2418	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2419
2420	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2421	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2422	# WHICH REQUIRE SUFFICIENT MEMORY
2423	ulimit -s unlimited
2424	fi
2425
2426	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2427	cat > ENVPAR << %%END%%
2428	&envpar run_identifier = '$fname', host = '$host',
2429	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2430	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2431	maximum_cpu_time_allowed = ${cpumax}.,
2432	revision = '$global_revision',
2433	local_dvrserver_running = $local_dvrserver_running /
2434
2435	%%END%%
2436
2437	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2438	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2439	printf "\n +++ WARNING: check_namelist_files.x not found."
2440	answer=dummy
2441	printf "\n\n"
2442
2443	if [[ $silent == false ]]
2444	then
2445	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2446	do
2447	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2448	read answer
2449	done
2450	if [[ $answer = a \|\| $answer = A ]]
2451	then
2452	printf "\n +++ Aborting..."
2453	rm -rf $check_sources
2454	locat=normal; exit
2455	else
2456	printf "\n *** skipping parameter file check."
2457
2458	fi
2459	fi
2460
2461	elif [[ $skip_check == false ]]
2462	then
2463	# STARTING THE PARAMETER FILE CHECK
2464	printf "\n\n *** starting parameter file check..."
2465
2466	# CHECKING THE P3D FILE
2467	printf "\n\n (1) checking $filename_input"
2468	echo "$numprocs 0 0" > VARIN
2469	errors=`./check_namelist_files.x < VARIN 2>&1`
2470
2471	check_error=false
2472	if [[ "$errors" == "" ]]
2473	then
2474	printf " --> o.k."
2475	else
2476	printf " --> failed."
2477	check_error=true
2478	printf "\n\n $errors"
2479	fi
2480
2481	# CHECKING THE PD3F FILE IF NECESSARY
2482	if [[ $check_restart == 1 && $check_error == false ]]
2483	then
2484	printf "\n\n (2) checking $filenamef"
2485
2486	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2487	found=false
2488	cat PARINF\|while read line
2489	do
2490	line=$(echo $line\|sed 's/ //g')
2491	if [[ $line == "&inipar" ]]
2492	then
2493	start_search=true
2494	fi
2495
2496	if [[ $start_search == true ]]
2497	then
2498	if [[ $line == "initializing_actions='read_restart_data'" ]]
2499	then
2500	found=true
2501	break
2502	fi
2503	fi
2504
2505	if [[ $line == "/" ]]
2506	then
2507	start_search=false
2508	fi
2509
2510	done
2511
2512	if [[ $found = false ]]
2513	then
2514	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2515	printf "\n in &inipar list in $fname$p3df_suffix."
2516	rm -rf $check_sources
2517	locat=check_namelist; exit
2518	fi
2519
2520	# READ max_user_pr FROM FILES
2521	if [[ -f parin_for_check ]]
2522	then
2523	read max_pr_user < parin_for_check
2524	else
2525	max_user_pr=0
2526	fi
2527
2528	echo "$numprocs 1 $max_pr_user" > VARIN
2529	errors=`./check_namelist_files.x < VARIN 2>&1`
2530
2531	if [[ "$errors" == "" ]]
2532	then
2533	printf " --> o.k."
2534	else
2535	printf " --> failed."
2536	check_error=true
2537	printf "\n\n $errors"
2538	fi
2539	fi
2540
2541	# REPORT ERRORS AND CONTINUE/EXIT
2542	if [[ $check_error == true ]]
2543	then
2544	printf "\n +++ errors found in the parameter file!\n"
2545	answer=dummy
2546	printf "\n\n"
2547
2548	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2549	do
2550	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2551	read answer
2552	done
2553
2554	if [[ $answer = a \|\| $answer = A ]]
2555	then
2556	printf "\n +++ Aborting..."
2557	rm -rf $check_sources
2558	locat=normal; exit
2559	fi
2560	else
2561	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2562	fi
2563	rm -rf $check_sources
2564	fi
2565	else
2566	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
2567	fi
2568
2569	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2570	rm -rf $check_sources
2571	cd $working_directory
2572
2573
2574	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2575	# CHENDE AKTIONEN DURCHGEFUEHRT
2576	if [[ $do_batch = false ]]
2577	then
2578
2579
2580	# TEMPORAEREN KATALOG ERZEUGEN
2581	mkdir -p $TEMPDIR
2582	chmod go+rx $TEMPDIR
2583	tmpcreate=true
2584
2585	# set striping on lustre file system
2586	# if [[ $localhost = lcsgih ]]
2587	# then
2588	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2589	# lfs getstripe $TEMPDIR
2590	# fi
2591
2592
2593	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2594	# TEMPORAERES VERZEICHNIS KOPIEREN
2595	if [[ $do_compile = true ]]
2596	then
2597
2598	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2599	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2600	if [[ $localhost = nech ]]
2601	then
2602	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2603	if mkdir -p $TEMPDIR_COMPILE
2604	then
2605	printf "\n *** \"$TEMPDIR_COMPILE\" "
2606	printf "\n is generated as temporary directory for cross compiling\n"
2607	else
2608	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2609	printf "\n needed for cross compilation failed"
2610	locat=compile
2611	exit
2612	fi
2613	else
2614	TEMPDIR_COMPILE=$TEMPDIR
2615	fi
2616
2617
2618	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2619	line=""
2620	grep "%depository_path" $config_file > tmp_mrun
2621	while read line
2622	do
2623	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2624	then
2625	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2626	then
2627	global_depository_path=`echo $line \| cut -d" " -s -f2`
2628	fi
2629	fi
2630	done < tmp_mrun
2631
2632	line=""
2633	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2634	while read line
2635	do
2636	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2637	then
2638	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2639	then
2640	local_depository_path=`echo $line \| cut -d" " -s -f2`
2641	fi
2642	fi
2643	done < tmp_mrun
2644
2645	if [[ "$local_depository_path" = "" ]]
2646	then
2647	if [[ "$global_depository_path" != "" ]]
2648	then
2649	local_depository_path=$global_depository_path
2650	else
2651	printf "\n\n +++ no depository path found in configuration file"
2652	printf "\n for local host \"$localhost\" "
2653	printf "\n please set \"\%depository_path\" in configuration file\n"
2654	locat=config_file; exit
2655	fi
2656	fi
2657	eval local_depository_path=$local_depository_path
2658	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2659	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2660
2661
2662	basename=`print $mainprog \| cut -f1 -d"."`
2663	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2664	if [[ ! -f $make_depository ]]
2665	then
2666	printf "\n"
2667	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2668	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2669	else
2670	cp $make_depository $TEMPDIR_COMPILE
2671	cd $TEMPDIR_COMPILE
2672	tar -xf $make_depository > /dev/null 2>&1
2673	cd - > /dev/null
2674	fi
2675
2676	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2677
2678	else
2679
2680	cp $executable ${TEMPDIR}/a.out
2681
2682	fi
2683
2684
2685	# WECHSEL IN TEMPORAEREN KATALOG
2686	cd $TEMPDIR
2687	printf "\n *** changed to temporary directory: $TEMPDIR"
2688
2689
2690	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2691	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2692	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2693	# ERMITTELN
2694	(( i = 0 ))
2695	while (( i < iout ))
2696	do
2697	(( i = i + 1 ))
2698	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2699	then
2700	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2701	else
2702	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2703	fi
2704	done
2705
2706
2707	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2708	if [[ $do_compile = true ]]
2709	then
2710
2711
2712	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2713	printf "\n\n\n *** compilation starts \n$striche\n"
2714	printf " *** compilation with make using following options:\n"
2715	printf " make depository: $make_depository"
2716	if [[ "$mopts" != "" ]]
2717	then
2718	printf " make options: $mopts\n"
2719	fi
2720	printf " compilername: $compiler_name\n"
2721	printf " compiler options: $fopts\n"
2722	printf " preprocessor directives: $cpp_options \n"
2723	printf " linker options: $lopts \n"
2724	if [[ "$modules" != "" ]]
2725	then
2726	printf " modules to be load: $modules \n"
2727	fi
2728	printf " source code files: $source_list \n"
2729
2730	if [[ $localhost = nech ]]
2731	then
2732	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2733	ssh 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2734	cp $TEMPDIR_COMPILE/a.out .
2735	[[ $? != 0 ]] && compile_error=true
2736	rm -rf $TEMPDIR_COMPILE
2737	elif [[ $localhost = ibmh ]]
2738	then
2739	printf " compiler is called via ssh on \"plogin1\" \n"
2740	ssh plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2741	[[ ! -f a.out ]] && compile_error=true
2742	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2743	elif [[ $localhost = lcsgib ]]
2744	then
2745	printf " compiler is called via ssh on \"bicegate0\" \n"
2746	ssh bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2747	[[ ! -f a.out ]] && compile_error=true
2748	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2749	elif [[ $localhost = lcsgih ]]
2750	then
2751	printf " compiler is called via ssh on \"hicegate0\" \n"
2752	ssh hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2753	[[ ! -f a.out ]] && compile_error=true
2754	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2755	elif [[ $localhost = lcflow ]]
2756	then
2757	printf " compiler is called via ssh on \"flow\" \n"
2758	ssh flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2759	[[ ! -f a.out ]] && compile_error=true
2760	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2761	else
2762	[[ "$init_cmds" != "" ]] && eval $init_cmds
2763	[[ "$module_calls" != "" ]] && eval $module_calls
2764	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2765
2766	fi
2767
2768	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2769	then
2770	printf "\n +++ error occured while compiling or linking"
2771	locat=compile
2772
2773	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2774	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2775	# then
2776	exit
2777	# else
2778	# locat=normal
2779	# fi
2780	else
2781	printf "$striche\n *** compilation finished \n"
2782	fi
2783	fi
2784
2785
2786	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2787	if [[ $local_compile = true ]]
2788	then
2789	cd $HOME
2790	rm -rf $TEMPDIR
2791	locat=local_compile; exit
2792	fi
2793
2794
2795	# BEREITSTELLEN DER INPUT-DATEIEN
2796	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2797	(( i = 0 ))
2798	while (( i < iin ))
2799	do
2800	(( i = i + 1 ))
2801	if (( i == 1 ))
2802	then
2803	printf "\n\n *** providing INPUT-files:\n$striche"
2804	fi
2805
2806
2807	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2808	if [[ "${transin[$i]}" = unavailable ]]
2809	then
2810	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2811	then
2812	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2813	printf "\n is not available!"
2814	else
2815	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2816	printf "\n is not available!"
2817	fi
2818	continue
2819	fi
2820
2821	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2822	files_for_pes=false; datentyp=file
2823	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2824	then
2825	files_for_pes=true; datentyp=directory
2826	actionin[$i]=""
2827	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2828	then
2829	actionin[$i]=""
2830	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2831	then
2832	files_for_pes=true; datentyp=directory
2833	actionin[$i]="ar"
2834	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2835	then
2836	actionin[$i]="ar"
2837	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2838	then
2839	files_for_pes=true; datentyp=directory
2840	actionin[$i]="fl"
2841	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2842	then
2843	actionin[$i]="fl"
2844	fi
2845
2846	if [[ $files_for_pes = true ]]
2847	then
2848	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2849	else
2850	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2851	fi
2852
2853	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2854	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2855	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2856	# SERVER ZU HOLEN
2857	if [[ "${actionin[$i]}" = fl ]]
2858	then
2859	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2860	if [[ $files_for_pes = false ]]
2861	then
2862	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2863	then
2864	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2865	got_tmp[$i]=true
2866	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2867	then
2868	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2869	printf "\n *** trying to use backup copy in \"$WORK\" "
2870	cp $WORK/${frelin[$i]} ${localin[$i]}
2871	else
2872	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2873	printf "\n or \"$tmp_data_catalog\" does not exist!"
2874	printf "\n *** trying to get copy from archive"
2875	actionin[$i]=ar
2876	fi
2877	else
2878	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2879	then
2880	mkdir ${localin[$i]}
2881	cd $tmp_data_catalog/${frelin[$i]}
2882	for file in $(ls *)
2883	do
2884	ln $file $TEMPDIR/${localin[$i]}
2885	done
2886	cd $TEMPDIR
2887	got_tmp[$i]=true
2888	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2889	then
2890	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2891	printf "\n *** trying to use backup copy in \"$WORK\" "
2892	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2893	else
2894	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2895	printf "\n or \"$tmp_data_catalog\" does not exist!"
2896	printf "\n *** trying to get copy from archive"
2897	actionin[$i]=ar
2898	fi
2899	fi
2900	fi
2901
2902
2903	# DATEI LIEGT AUF ARCHIV-SERVER
2904	if [[ "${actionin[$i]}" = ar ]]
2905	then
2906
2907	if [[ $files_for_pes = false ]]
2908	then
2909	printf "\n file will be restored from archive-system ($archive_system)!"
2910	else
2911	printf "\n directory will be restored from archive-system ($archive_system)!"
2912	fi
2913
2914	file_restored=false
2915
2916	if [[ $archive_system = asterix ]]
2917	then
2918	do_stagein=true
2919	(( stagein_anz = 0 ))
2920	while [[ $do_stagein = true ]]
2921	do
2922	if [[ $files_for_pes = false ]]
2923	then
2924	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2925	else
2926	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2927	fi
2928	cat STAGEIN_OUTPUT
2929	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2930	then
2931	file_restored=true
2932	do_stagein=false
2933	else
2934	(( stagein_anz = stagein_anz + 1 ))
2935	if (( stagein_anz == 10 ))
2936	then
2937	printf "\n +++ stagein stoped after 10 tries"
2938	locat=stage
2939	exit
2940	fi
2941	printf "\n +++ restoring from archive failed, trying again:"
2942	sleep 900
2943	fi
2944	done
2945	elif [[ $archive_system = DMF ]]
2946	then
2947	if [[ $files_for_pes = false ]]
2948	then
2949	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2950	locat=DMF
2951	exit
2952	else
2953	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2954	cp -r $ARCHIVE/${frelin[$i]} $PWD
2955	file_restored=true
2956	fi
2957	elif [[ $archive_system = tivoli ]]
2958	then
2959	if [[ $files_for_pes = false ]]
2960	then
2961	if [[ $localhost = lcsgih ]]
2962	then
2963	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2964	else
2965	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2966	fi
2967	else
2968	(( inode = 0 ))
2969	while (( inode < nodes ))
2970	do
2971	if [[ $localhost = lcsgih ]]
2972	then
2973	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2974	else
2975	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2976	fi
2977	(( inode = inode + 1 ))
2978	done
2979	fi
2980	file_restored=true
2981	elif [[ $archive_system = ut ]]
2982	then
2983	if [[ $files_for_pes = false ]]
2984	then
2985	cp $UT/${frelin[$i]} .
2986	else
2987	(( inode = 0 ))
2988	while (( inode < nodes ))
2989	do
2990	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2991	(( inode = inode + 1 ))
2992	done
2993	fi
2994	file_restored=true
2995	else
2996	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2997	locat=rearchive
2998	exit
2999	fi
3000
3001	if [[ $file_restored = true ]]
3002	then
3003
3004	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3005	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3006	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3007	if [[ $files_for_pes = false ]]
3008	then
3009	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3010	else
3011	mkdir $tmp_data_catalog/${frelin[$i]}
3012	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3013	fi
3014	got_tmp[$i]=true
3015
3016	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3017	mv ${frelin[$i]} ${localin[$i]}
3018
3019	fi
3020	fi
3021
3022
3023	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3024	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3025	then
3026
3027	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3028	then
3029
3030	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3031	printf "\n file will be provided for $numprocs processors"
3032	mkdir ${localin[$i]}
3033	ival=$numprocs
3034	(( ii = 0 ))
3035	while (( ii <= ival-1 ))
3036	do
3037	if (( ii < 10 ))
3038	then
3039	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3040	elif (( ii < 100 ))
3041	then
3042	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3043	elif (( ii < 1000 ))
3044	then
3045	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3046	else
3047	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3048	fi
3049	(( ii = ii + 1 ))
3050	done
3051
3052	else
3053
3054	if [[ $files_for_pes = true ]]
3055	then
3056
3057	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3058	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3059	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3060	# PER MOVE UMBENANNT WERDEN
3061	printf "\n providing $numprocs files for the respective processors"
3062	mkdir ${localin[$i]}
3063	if [[ $link_local_input = true ]]
3064	then
3065	printf " using ln -f\n"
3066	cd ${absnamein[$i]}
3067	for file in $(ls *)
3068	do
3069	ln -f $file ${localin[$i]}
3070	done
3071	cd $TEMPDIR
3072	fi
3073	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3074	if [[ ! -f "${localin[$i]}/_0000" ]]
3075	then
3076	if [[ $link_local_input = true ]]
3077	then
3078	printf " ln failed for .../_0000, using cp...\n"
3079	fi
3080	cp -r ${absnamein[$i]}/* ${localin[$i]}
3081	fi
3082
3083	else
3084	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3085	if [[ $link_local_input = true ]]
3086	then
3087	printf " using ln -f\n"
3088	ln -f ${absnamein[$i]} ${localin[$i]}
3089	fi
3090	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3091	if [[ ! -f "${localin[$i]}" ]]
3092	then
3093	if [[ $link_local_input = true ]]
3094	then
3095	printf " ln failed, using cp...\n"
3096	fi
3097	cp ${absnamein[$i]} ${localin[$i]}
3098	fi
3099	fi
3100	fi
3101	fi
3102
3103	done
3104	if (( i != 0 ))
3105	then
3106	printf "\n$striche\n *** all INPUT-files provided \n"
3107	fi
3108
3109
3110	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3111	(( i = 0 ))
3112	while (( i < iic ))
3113	do
3114	(( i = i + 1 ))
3115	if (( i == 1 ))
3116	then
3117	printf "\n\n *** execution of INPUT-commands:\n$striche"
3118	fi
3119	printf "\n >>> ${in_command[$i]}"
3120	eval ${in_command[$i]}
3121	if (( i == iic ))
3122	then
3123	printf "\n$striche\n"
3124	fi
3125	done
3126
3127
3128	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3129	cpurest=${cpumax}.
3130
3131
3132	# START DVR STREAMING SERVER
3133	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3134	then
3135	if [[ "$dvr_server" != "" ]]
3136	then
3137
3138	printf "\n\n *** preparing the dvr streaming server configuration file"
3139
3140	# Check, if a dvr server is already running
3141	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3142	if [[ "$running_dvrserver_id" != "" ]]
3143	then
3144
3145	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3146	printf "\n This server is used instead starting a new one!"
3147	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3148
3149	else
3150
3151	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3152	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3153	then
3154	cp ${PALM_BIN}/.dvrserver.config .
3155
3156	# Entering the BASEDIR, UID and GID into this file
3157	user_id=`id -u`
3158	group_id=`id -g`
3159	# & is needed as seperator, because TEMPDIR contains /
3160	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3161	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3162	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3163	mv .dvrserver.3 .dvrserver.config
3164	rm .dvrserver.1 .dvrserver.2
3165
3166	# Start dvr server in background, get his id and print on terminal
3167	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3168	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3169	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3170	local_dvrserver_running=.TRUE.
3171	else
3172	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3173	printf "\n \"$PALM_BIN\" "
3174	locat=dvr
3175	exit
3176	fi
3177
3178	fi
3179
3180	else
3181	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3182	fi
3183	fi
3184
3185
3186	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3187	# LESEN VON PALM)
3188	cat > ENVPAR << %%END%%
3189	&envpar run_identifier = '$fname', host = '$localhost',
3190	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3191	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3192	maximum_cpu_time_allowed = ${cpumax}.,
3193	revision = '$global_revision',
3194	local_dvrserver_running = $local_dvrserver_running /
3195
3196	%%END%%
3197
3198
3199	# PROGRAMMSTART
3200	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3201	PATH=$PATH:$TEMPDIR
3202
3203	# MPI debug option (argument checking, slows down execution due to increased latency)
3204	if [[ "$mpi_debug" = true ]]
3205	then
3206	export MPI_CHECK_ARGS=1
3207	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3208	fi
3209
3210	if [[ "$totalview" = true ]]
3211	then
3212	printf "\n *** totalview debugger will be used"
3213	tv_opt="-tv"
3214	else
3215	tv_opt=""
3216	fi
3217
3218	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3219	then
3220	if [[ "$ENVIRONMENT" = BATCH ]]
3221	then
3222	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3223	then
3224	printf "\n +++ debug is allowed in interactive mode only"
3225	locat=debug
3226	exit
3227	fi
3228	fi
3229	if [[ $localhost = decalpha ]]
3230	then
3231	dxladebug a.out
3232	elif [[ $localhost = ibmh ]]
3233	then
3234
3235	# SETUP THE IBM MPI ENVIRONMENT
3236	export MP_SHARED_MEMORY=yes
3237	export AIXTHREADS_SCOPE=S
3238	export OMP_NUM_THREADS=$threads_per_task
3239	export AUTHSTATE=files
3240	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3241
3242	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3243	export MP_ADAPTER_USE=shared
3244	export MP_CPU_USE=multiple
3245	export MP_TIMEOUT=1200
3246
3247	unset MP_TASK_AFFINITY
3248
3249	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3250	#(( ii = 1 ))
3251	#while (( ii <= $numprocs ))
3252	#do
3253	# echo $localhost_realname >> hostfile
3254	# (( ii = ii + 1 ))
3255	#done
3256	#export MP_HOSTFILE=hostfile
3257
3258	if [[ "$LOADLBATCH" = yes ]]
3259	then
3260	totalview poe a.out $ROPTS
3261	else
3262	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3263	export TVDSVRLAUNCHCMD=ssh
3264	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3265	fi
3266	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3267	then
3268	# CURRENTLY NO DEBUGGER ON LCSGI
3269	if [[ $run_coupled_model = true ]]
3270	then
3271	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3272	locat=debug
3273	exit
3274	else
3275	echo "no_coupling" > runfile_atmos
3276	fi
3277	(( ii = $numprocs / $threads_per_task ))
3278	export OMP_NUM_THREADS=$threads_per_task
3279	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3280	if [[ $threads_per_task != 1 ]]
3281	then
3282	printf "\n threads per task: $threads_per_task"
3283	fi
3284	printf "\n\n"
3285	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3286	then
3287	# export MPI_LAUNCH_TIMEOUT=360
3288	if [[ "$totalview" = true ]]
3289	then
3290	printf "\n running totalview debugger"
3291	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3292	else
3293	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3294	fi
3295	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3296	then
3297	# ulimit -s 300000 # A too large stack size causes problems
3298	# export MV2_NUM_PORTS=2
3299	# export MV2_CPU_MAPPING=0:1:2:3
3300	if [[ "$totalview" = true ]]
3301	then
3302	printf "\n running totalview debugger"
3303	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3304	else
3305	mpiexec ./a.out $ROPTS < runfile_atmos
3306	fi
3307	fi
3308	else
3309	printf "\n +++ no debug available on \"$localhost\" "
3310	printf "\n or not implemented in mrun so far"
3311	locat=debug
3312	exit
3313	fi
3314
3315	# end debug mode
3316	else
3317
3318	# normal execution
3319	if [[ -n $numprocs ]]
3320	then
3321	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3322	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3323	then
3324	# SETUP THE IBM MPI ENVIRONMENT
3325	if [[ $host != ibmh && $host != ibmkisti ]]
3326	then
3327	export MP_SHARED_MEMORY=yes
3328	export AIXTHREAD_SCOPE=S
3329	export OMP_NUM_THREADS=$threads_per_task
3330	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3331	export AUTHSTATE=files
3332	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3333	# export MP_PRINTENV=yes
3334
3335	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3336	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3337	export MP_WAIT_MODE=poll
3338	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3339	fi
3340
3341	if [[ $host = ibmkisti ]]
3342	then
3343	export LANG=en_US
3344	export MP_SHARED_MEMORY=yes
3345	if [[ $threads_per_task = 1 ]]
3346	then
3347	export MP_SINGLE_THREAD=yes
3348	export MEMORY_AFFINITY=MCM
3349	else
3350	export OMP_NUM_THREADS=$threads_per_task
3351	fi
3352	fi
3353
3354	if [[ "$LOADLBATCH" = yes ]]
3355	then
3356	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3357	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3358	then
3359	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3360	else
3361	if [[ $run_coupled_model = false ]]
3362	then
3363	if [[ "$ocean_file_appendix" = true ]]
3364	then
3365	echo "precursor_ocean" > runfile_atmos
3366	else
3367	echo "precursor_atmos" > runfile_atmos
3368	fi
3369	else
3370	(( iia = $numprocs_atmos / $threads_per_task ))
3371	(( iio = $numprocs_ocean / $threads_per_task ))
3372	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3373	printf "\n using $coupled_mode coupling"
3374	printf "\n\n"
3375	echo "coupled_run $iia $iio" > runfile_atmos
3376	fi
3377	poe ./a.out $ROPTS < runfile_atmos
3378	fi
3379	else
3380	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3381	then
3382	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3383	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3384	then
3385	if [[ -f $hostfile ]]
3386	then
3387	cp $hostfile hostfile
3388	else
3389	(( ii = 1 ))
3390	while (( ii <= $numprocs ))
3391	do
3392	echo $localhost_realname >> hostfile
3393	(( ii = ii + 1 ))
3394	done
3395	fi
3396	export MP_HOSTFILE=hostfile
3397	if [[ $run_coupled_model = false ]]
3398	then
3399	if [[ "$ocean_file_appendix" = true ]]
3400	then
3401	echo "precursor_ocean" > runfile_atmos
3402	else
3403	echo "precursor_atmos" > runfile_atmos
3404	fi
3405	else
3406	(( iia = $numprocs_atmos / $threads_per_task ))
3407	(( iio = $numprocs_ocean / $threads_per_task ))
3408	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3409	printf "\n using $coupled_mode coupling"
3410	printf "\n\n"
3411	echo "coupled_run $iia $iio" > runfile_atmos
3412	fi
3413	if [[ $localhost = ibmy ]]
3414	then
3415	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3416	else
3417	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3418	fi
3419
3420	else
3421	if [[ "$host_file" = "" ]]
3422	then
3423	printf "\n +++ no hostfile given in configuration file"
3424	locat=config_file
3425	exit
3426	else
3427	eval host_file=$host_file
3428	fi
3429	export MP_HOSTFILE=$host_file
3430	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3431	fi
3432	fi
3433	elif [[ $host = nech \|\| $host = necriam ]]
3434	then
3435	(( ii = nodes ))
3436	if [[ $ii = 1 ]]
3437	then
3438	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3439	export MPIPROGINF=YES
3440	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3441	echo "*** execution on single node with mpirun"
3442	mpirun -np $numprocs ./a.out $ROPTS
3443	else
3444	(( i = 0 ))
3445	while (( i < ii ))
3446	do
3447	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3448	(( i = i + 1 ))
3449	done
3450
3451	echo "#!/bin/sh" > mpi_exec_shell
3452	echo " " >> mpi_exec_shell
3453	echo "set -u" >> mpi_exec_shell
3454	echo "F_ERRCNT=0" >> mpi_exec_shell
3455	echo "MPIPROGINV=YES" >> mpi_exec_shell
3456	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3457	echo "cpurest=$cpurest" >> mpi_exec_shell
3458	echo "fname=$fname" >> mpi_exec_shell
3459	echo "localhost=$localhost" >> mpi_exec_shell
3460	echo "return_addres=$return_addres" >> mpi_exec_shell
3461	echo "return_username=$return_username" >> mpi_exec_shell
3462	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3463	echo "write_binary=$write_binary" >> mpi_exec_shell
3464	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3465	echo " " >> mpi_exec_shell
3466	echo "export F_ERRCNT" >> mpi_exec_shell
3467	echo "export MPIPROGINV" >> mpi_exec_shell
3468	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3469	echo "export cpurest" >> mpi_exec_shell
3470	echo "export fname" >> mpi_exec_shell
3471	echo "export localhost" >> mpi_exec_shell
3472	echo "export return_addres" >> mpi_exec_shell
3473	echo "export return_username" >> mpi_exec_shell
3474	echo "export tasks_per_node" >> mpi_exec_shell
3475	echo "export write_binary" >> mpi_exec_shell
3476	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3477	echo " " >> mpi_exec_shell
3478	echo "exec ./a.out" >> mpi_exec_shell
3479
3480	chmod u+x mpi_exec_shell
3481	export MPIPROGINF=YES
3482	mpirun -f multinode_config &
3483	wait
3484
3485	fi
3486	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3487	then
3488
3489	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3490	# DOES NOT EXIST
3491	if [[ $host != lcsgih && $host != lcsgib ]]
3492	then
3493	if [[ -f $hostfile ]]
3494	then
3495	cp $hostfile hostfile
3496	(( ii = $numprocs / $threads_per_task ))
3497	else
3498	(( ii = 1 ))
3499	while (( ii <= $numprocs / $threads_per_task ))
3500	do
3501	echo $localhost_realname >> hostfile
3502	(( ii = ii + 1 ))
3503	done
3504	fi
3505	eval zeile=\"`head -n $ii hostfile`\"
3506	printf "\n *** running on: $zeile"
3507	fi
3508
3509	(( ii = $numprocs / $threads_per_task ))
3510	export OMP_NUM_THREADS=$threads_per_task
3511	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3512	if [[ $threads_per_task != 1 ]]
3513	then
3514	# increase stack size to unlimited, because large runs
3515	# may abort otherwise
3516	ulimit -Ss unlimited
3517	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3518	fi
3519	if [[ $run_coupled_model = false ]]
3520	then
3521	if [[ "$ocean_file_appendix" = true ]]
3522	then
3523	echo "precursor_ocean" > runfile_atmos
3524	else
3525	echo "precursor_atmos" > runfile_atmos
3526	fi
3527	printf "\n\n"
3528	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3529	then
3530	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3531	then
3532	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3533	# export MPI_DSM_DISTRIBUTE=1
3534	# MPI_DSM_CPULIST: pin MPI processes to cores
3535	if [[ $use_openmp = false ]]
3536	then
3537	if [[ "$sgi_feature" = ice2 ]]
3538	then
3539	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3540	else
3541	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3542	fi
3543	else
3544	unset MPI_DSM_CPULIST
3545	fi
3546	# MPI_IB_RAILS: use both IB rails on ICE2
3547	export MPI_BUFS_PER_HOST=512
3548	export MPI_IB_RAILS=2
3549	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3550	export MPI_CONNECTIONS_THRESHOLD=8192
3551	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3552	export MPI_TYPE_DEPTH=20
3553	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3554	export MPI_GROUP_MAX=64
3555	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3556	if [[ $use_openmp = true ]]
3557	then
3558	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3559	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3560	else
3561	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3562	fi
3563
3564	# next is test for openmp usage
3565	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3566	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3567	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3568	then
3569	export MV2_NUM_PORTS=2
3570	# The default setting of MV2_CPU_MAPPING gives best results
3571	# export MV2_ENABLE_AFFINITY=1
3572	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3573	# if [[ "$sgi_feature" = ice2 ]]
3574	# then
3575	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3576	# else
3577	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3578	# fi
3579	if [[ $use_openmp = true ]]
3580	then
3581	unset MV2_CPU_MAPPING
3582	export MV2_ENABLE_AFFINITY=0
3583	fi
3584	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3585	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3586	if [[ $use_openmp = true ]]
3587	then
3588	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3589	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3590	else
3591	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3592	fi
3593	elif [[ "$mpilib" = impi ]]
3594	then
3595	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3596	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3597	fi
3598	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3599	then
3600	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3601	elif [[ $host = lcflow ]]
3602	then
3603	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3604	elif [[ $host = lcsb ]]
3605	then
3606	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3607	elif [[ $host = lckiaps ]]
3608	then
3609	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3610	else
3611	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3612	fi
3613	else
3614
3615	# currently there is no full MPI-2 support on ICE and XT4
3616	(( iia = $numprocs_atmos / $threads_per_task ))
3617	(( iio = $numprocs_ocean / $threads_per_task ))
3618	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3619	printf "\n using $coupled_mode coupling"
3620	printf "\n\n"
3621
3622	if [[ $coupled_mode = "mpi2" ]]
3623	then
3624	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3625	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3626	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3627	then
3628
3629	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3630	then
3631	# export MPI_LAUNCH_TIMEOUT=360
3632	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3633	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3634	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3635	then
3636	# ulimit -s 300000 # A too large stack size causes problems
3637	# export MV2_NUM_PORTS=2
3638	# export MV2_CPU_MAPPING=0:1:2:3
3639	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3640	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3641	fi
3642
3643	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3644	then
3645
3646	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3647	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3648
3649	else
3650	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3651	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3652	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3653	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3654	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3655	fi
3656	wait
3657
3658	else
3659
3660	echo "coupled_run $iia $iio" > runfile_atmos
3661	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3662	then
3663
3664	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3665	then
3666	# export MPI_LAUNCH_TIMEOUT=360
3667	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3668	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3669	then
3670	# ulimit -s 300000 # A too large stack size causes problems
3671	# export MV2_NUM_PORTS=2
3672	# export MV2_CPU_MAPPING=0:1:2:3
3673	mpiexec ./a.out $ROPTS < runfile_atmos
3674	fi
3675
3676	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3677	then
3678
3679	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3680
3681	elif [[ $host = lck \|\| $host = lckordi ]]
3682	then
3683	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3684	fi
3685	wait
3686	fi
3687
3688	fi
3689	elif [[ $host = decalpha ]]
3690	then
3691	dmpirun -np $numprocs a.out $ROPTS
3692	elif [[ $host = lckyoto ]]
3693	then
3694	set -xv
3695	export P4_RSHCOMMAND=plesh
3696	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3697	if [[ "$ENVIRONMENT" = BATCH ]]
3698	then
3699	if [[ "$cond2" = fujitsu ]]
3700	then
3701	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3702	elif [[ "cond2" = pgi ]]
3703	then
3704	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3705	else
3706	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3707	fi
3708	else
3709	if [[ "$cond2" = "" ]]
3710	then
3711	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3712	else
3713	mpirun -np $numprocs ./a.out $ROPTS
3714	fi
3715	fi
3716	set +xv
3717	elif [[ $host = lctit ]]
3718	then
3719	export OMP_NUM_THREADS=$threads_per_task
3720	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3721	if [[ "$threads_per_task" != 1 ]]
3722	then
3723	export MV2_ENABLE_AFFINITY=0
3724	fi
3725	echo "----- PBS_NODEFILE content:"
3726	cat $PBS_NODEFILE
3727	echo "-----"
3728	(( ii = $numprocs / $threads_per_task ))
3729	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3730	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3731	else
3732	mpprun -n $numprocs a.out $ROPTS
3733	fi
3734	[[ $? != 0 ]] && execution_error=true
3735
3736
3737	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3738	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3739	then
3740	apprentice
3741	fi
3742	else
3743	a.out $ROPTS
3744	fi
3745	fi
3746	if [[ $? != 0 \|\| $execution_error = true ]]
3747	then
3748
3749	# ABBRUCH BEI LAUFZEITFEHLER
3750	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3751	printf "\n +++ runtime error occured"
3752	locat=execution
3753	exit
3754	else
3755	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3756	printf "\n$striche\n *** execution finished \n"
3757
3758	# Stop the dvr streaming server and process the dvr output in order
3759	# to create dvrs- and html-files containing all streams
3760	if [[ "$dvrserver_id" != "" ]]
3761	then
3762	kill $dvrserver_id
3763	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3764
3765	# If there is a directory, data have been output by the
3766	# streaming server. Otherwise, user has chosen dvrp_output=local
3767	if [[ -d DATA_DVR ]]
3768	then
3769
3770	# Add the current dvr configuration file to the dvr output
3771	# directory
3772	cp .dvrserver.config DATA_DVR
3773
3774	# Process the dvr output (option -s for also generating
3775	# sequence mode data)
3776	process_dvr_output -d DATA_DVR -f $fname -s
3777
3778	else
3779
3780	# Process the local output
3781	process_dvr_output -l -d DATA_DVR -f $fname
3782
3783	fi
3784
3785	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3786	then
3787
3788	# Process dvr output generated in local mode (dvrp_output=local)
3789	process_dvr_output -l -d DATA_DVR -f $fname
3790
3791	fi
3792	fi
3793
3794
3795
3796	# Call of combine_plot_fields in order to merge single files written
3797	# by each PE into one file.
3798	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3799	then
3800	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3801	printf "\n 2d- and/or 3d-data may be incomplete!"
3802	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3803	elif [[ "$combine_plot_fields" == true ]]
3804	then
3805	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3806	combine_plot_fields${block}.x
3807	else
3808	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3809	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3810	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3811	fi
3812
3813
3814
3815	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3816	(( i = 0 ))
3817	while (( i < ioc ))
3818	do
3819	(( i = i + 1 ))
3820	if (( i == 1 ))
3821	then
3822	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3823	fi
3824	printf "\n >>> ${out_command[$i]}"
3825	eval ${out_command[$i]}
3826	if (( i == ioc ))
3827	then
3828	printf "\n$striche\n"
3829	fi
3830	done
3831
3832
3833	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3834	if [[ $do_trace = true ]]
3835	then
3836	printf "\n\n"
3837	ls -al
3838	fi
3839
3840
3841
3842	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3843	(( i = 0 ))
3844	while (( i < iout ))
3845	do
3846	(( i = i + 1 ))
3847	if (( i == 1 ))
3848	then
3849	printf "\n\n *** saving OUTPUT-files:\n$striche"
3850	fi
3851
3852	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3853	files_for_pes=false; filetyp=file
3854	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3855	then
3856	files_for_pes=true; filetyp=directory
3857	actionout[$i]=""
3858	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3859	then
3860	actionout[$i]=""
3861	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3862	then
3863	files_for_pes=true; filetyp=directory
3864	actionout[$i]="ar"
3865	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3866	then
3867	actionout[$i]="ar"
3868	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3869	then
3870	files_for_pes=true; filetyp=directory
3871	actionout[$i]="fl"
3872	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3873	then
3874	actionout[$i]="fl"
3875	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3876	then
3877	files_for_pes=true; filetyp=directory
3878	actionout[$i]="tr"
3879	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3880	then
3881	actionout[$i]="tr"
3882	fi
3883
3884	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3885	then
3886	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3887	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3888	then
3889	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3890	else
3891
3892
3893	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3894	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3895	# REMOTE-RECHNUNGEN
3896	if [[ "${actionout[$i]}" = tr ]]
3897	then
3898	if [[ $localhost != $fromhost ]]
3899	then
3900	if [[ $files_for_pes = false ]]
3901	then
3902	cps=""
3903	cst=""
3904	else
3905	cps=-c
3906	cst="/"
3907	fi
3908	if [[ $localhost = nech ]]
3909	then
3910
3911	# TRANSFER IN EIGENSTAENDIGEM JOB
3912	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3913	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3914	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3915	if [[ $files_for_pes = false ]]
3916	then
3917	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3918	else
3919	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3920	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3921	fi
3922
3923	echo "set -x" > transfer_${localout[$i]}
3924	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3925
3926	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3927	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3928	printf "\n or higher cycle\n"
3929	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3930
3931	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3932
3933	if [[ $localhost = nech ]]
3934	then
3935	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3936	else
3937	if [[ "$LOGNAME" = b323013 ]]
3938	then
3939	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3940	else
3941	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3942	fi
3943	fi
3944
3945	else
3946
3947	# TRANSFER INNERHALB DIESES JOBS
3948	transfer_failed=false
3949	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3950	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3951	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3952	[[ $? != 0 ]] && transfer_failed=true
3953
3954	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3955	# LOKALER MASCHINE ANLEGEN
3956	if [[ $transfer_failed = true ]]
3957	then
3958	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3959	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3960
3961	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3962	# ANLEGEN.
3963	eval local_catalog=${pathout[$i]}
3964	if [[ ! -d $local_catalog ]]
3965	then
3966	printf " *** local directory does not exist. Trying to create:\n"
3967	printf " $local_catalog \n"
3968	mkdir -p $local_catalog
3969	fi
3970	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3971	transfer_problems=true
3972	fi
3973	fi
3974	else
3975
3976	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3977	actionout[$i]=""
3978	fi
3979	fi
3980
3981
3982	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3983	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3984	# REMOTE-RECHNUNGEN
3985	if [[ "${actionout[$i]}" = tra ]]
3986	then
3987	if [[ $localhost != $fromhost ]]
3988	then
3989	if [[ $localhost = ibmh \|\| $localhost = nech ]]
3990	then
3991
3992	# TRANSFER IN EIGENSTAENDIGEM JOB
3993	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3994	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3995	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3996	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3997
3998	echo "set -x" > transfer_${localout[$i]}
3999	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4000
4001	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4002	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4003	printf "\n or higher cycle\n"
4004	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4005
4006	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4007
4008	if [[ $localhost = nech ]]
4009	then
4010	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4011	else
4012	if [[ $LOGNAME = b323013 ]]
4013	then
4014	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4015	else
4016	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4017	fi
4018	fi
4019
4020	else
4021
4022	# TRANSFER INNERHALB DIESES JOBS
4023	transfer_failed=false
4024	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4025	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4026	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4027	[[ $? != 0 ]] && transfer_failed=true
4028
4029	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4030	# LOKALER MASCHINE ANLEGEN
4031	if [[ $transfer_failed = true ]]
4032	then
4033	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4034	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4035
4036	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4037	# ANLEGEN
4038	eval local_catalog=${pathout[$i]}
4039	if [[ ! -d $local_catalog ]]
4040	then
4041	printf " *** local directory does not exist. Trying to create:\n"
4042	printf " $local_catalog \n"
4043	mkdir -p $local_catalog
4044	fi
4045
4046	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4047	transfer_problems=true
4048	fi
4049	fi
4050	else
4051
4052	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4053	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4054	actionout[$i]=a
4055	fi
4056	fi
4057
4058
4059	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4060	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4061	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4062	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4063	if [[ "${actionout[$i]}" = fl ]]
4064	then
4065	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4066	chmod g+rx $tmp_data_catalog
4067	if [[ $files_for_pes = false ]]
4068	then
4069	printf "\n >>> OUTPUT: ${localout[$i]} to"
4070	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4071	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4072	else
4073	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4074	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4075	mkdir $tmp_data_catalog/${frelout[$i]}
4076	cd ${localout[$i]}
4077	for file in $(ls *)
4078	do
4079	ln -f $file $tmp_data_catalog/${frelout[$i]}
4080	done
4081	cd $TEMPDIR
4082	fi
4083
4084
4085	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4086	if [[ $store_on_archive_system = true ]]
4087	then
4088
4089	if [[ $archive_system = asterix ]]
4090	then
4091	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4092	if [[ $files_for_pes = false ]]
4093	then
4094	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4095	else
4096	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4097	fi
4098	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4099	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4100	echo "then" >> archive_${frelout[$i]}
4101	echo " do_stageout=false" >> archive_${frelout[$i]}
4102	echo "else" >> archive_${frelout[$i]}
4103	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4104	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4105	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4106	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4107	if [[ $files_for_pes = false ]]
4108	then
4109	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4110	else
4111	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4112	fi
4113	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4114	echo "fi" >> archive_${frelout[$i]}
4115	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4116	elif [[ $archive_system = DMF ]]
4117	then
4118	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4119	if [[ $files_for_pes = false ]]
4120	then
4121	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4122	locat=DMF
4123	exit
4124	else
4125	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4126	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4127	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4128	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4129	fi
4130	elif [[ $archive_system = tivoli ]]
4131	then
4132	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4133	if [[ $files_for_pes = false ]]
4134	then
4135	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4136	echo "set -x" >> archive_${frelout[$i]}
4137	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4138	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4139	else
4140
4141	echo "set -x" >> archive_${frelout[$i]}
4142	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4143	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4144	cd $tmp_data_catalog
4145	all_files=`ls -1 ${frelout[$i]}/*`
4146	cd - > /dev/null
4147	(( inode = 0 ))
4148	(( tp1 = tasks_per_node + 1 ))
4149	while (( inode < nodes ))
4150	do
4151	# echo "*** all_files = \"$all_files\" "
4152	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4153	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4154	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4155	# echo "*** files = \"$files\" "
4156	# echo "*** all_files = \"$all_files\" "
4157	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4158	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4159	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4160	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4161	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4162	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4163	(( inode = inode + 1 ))
4164	done
4165	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4166	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4167	fi
4168	elif [[ $archive_system = ut ]]
4169	then
4170	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4171	if [[ $files_for_pes = false ]]
4172	then
4173	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4174	echo "set -x" >> archive_${frelout[$i]}
4175	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4176	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4177	else
4178
4179	echo "set -x" >> archive_${frelout[$i]}
4180	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4181	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4182	cd $tmp_data_catalog
4183	all_files=`ls -1 ${frelout[$i]}/*`
4184	cd - > /dev/null
4185	(( inode = 0 ))
4186	(( tp1 = tasks_per_node + 1 ))
4187	while (( inode < nodes ))
4188	do
4189	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4190	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4191	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4192	(( inode = inode + 1 ))
4193	done
4194	fi
4195	elif [[ $archive_system = none ]]
4196	then
4197	printf " +++ archiving on $localhost not available!\n"
4198	fi
4199
4200	if [[ $archive_system != none ]]
4201	then
4202	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4203	then
4204	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4205	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4206	elif [[ $localhost = nech ]]
4207	then
4208	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4209	fi
4210	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4211	fi
4212	else
4213	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4214	fi
4215
4216
4217	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4218	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4219	if [[ $files_for_pes = false ]]
4220	then
4221	cat /dev/null > ${pathout[$i]}
4222	else
4223	mkdir -p ${pathout[$i]}
4224	fi
4225
4226	fi
4227
4228
4229	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4230	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4231	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4232	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4233	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4234	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4235	if [[ "${actionout[$i]}" = ar ]]
4236	then
4237	if [[ $files_for_pes = false ]]
4238	then
4239	printf "\n >>> OUTPUT: ${localout[$i]} to"
4240	printf "\n ${pathout[$i]}"
4241	printf "\n File will be copied to archive-system ($archive_system) !\n"
4242	else
4243	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4244	printf "\n ${pathout[$i]}"
4245	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4246	fi
4247	mv ${localout[$i]} ${frelout[$i]}
4248
4249	file_saved=false
4250
4251	if [[ $archive_system = asterix ]]
4252	then
4253	do_stageout=true
4254	(( stageout_anz = 0 ))
4255	while [[ $do_stageout = true ]]
4256	do
4257	if [[ $files_for_pes = false ]]
4258	then
4259	stageout ${frelout[$i]} > STAGE_OUTPUT
4260	else
4261	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4262	fi
4263	cat STAGE_OUTPUT
4264	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4265	then
4266	file_saved=true
4267	do_stageout=false
4268	else
4269	if [[ $files_for_pes = false ]]
4270	then
4271	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4272	else
4273	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4274	fi
4275	(( stageout_anz = stageout_anz + 1 ))
4276	if (( stageout_anz == 10 ))
4277	then
4278	printf "\n +++ stoped after 10 unsuccessful tries!"
4279	archive_save=false
4280	do_stageout=false
4281	else
4282	printf "\n *** new try to store on archive after 15 min:"
4283	sleep 900
4284	fi
4285	fi
4286	done
4287	elif [[ $archive_system = DMF ]]
4288	then
4289	if [[ $files_for_pes = false ]]
4290	then
4291	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4292	locat=DMF
4293	exit
4294	else
4295	rm -rf $ARCHIVE/${frelout[$i]}
4296	cp -r ${frelout[$i]} $ARCHIVE
4297	fi
4298	file_saved=true
4299	elif [[ $archive_system = tivoli ]]
4300	then
4301	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4302	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4303	# GELEGT WERDEN
4304	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4305	chmod g+rx $tmp_data_catalog
4306	if [[ $files_for_pes = false ]]
4307	then
4308	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4309	else
4310	mkdir $tmp_data_catalog/${frelout[$i]}
4311	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4312	fi
4313
4314	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4315	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4316	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4317	if [[ $files_for_pes = false ]]
4318	then
4319	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4320	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4321	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4322	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4323	else
4324	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4325	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4326	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4327	fi
4328
4329	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4330	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4331	file_saved=true
4332
4333	elif [[ $archive_system = ut ]]
4334	then
4335	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4336	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4337	# GELEGT WERDEN
4338	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4339	chmod g+rx $tmp_data_catalog
4340	if [[ $files_for_pes = false ]]
4341	then
4342	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4343	else
4344	mkdir $tmp_data_catalog/${frelout[$i]}
4345	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4346	fi
4347
4348	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4349	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4350	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4351	if [[ $files_for_pes = false ]]
4352	then
4353	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4354	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4355	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4356	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4357	else
4358	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4359	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4360	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4361	fi
4362
4363	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4364	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4365	file_saved=true
4366
4367	else
4368	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4369	archive_save=false
4370	fi
4371	if [[ $file_saved = true ]]
4372	then
4373	if [[ $files_for_pes = false ]]
4374	then
4375	cat /dev/null > ${pathout[$i]}
4376	else
4377	mkdir -p ${pathout[$i]}
4378	fi
4379	fi
4380	fi
4381
4382	# APPEND AUF LOKALER MASCHINE
4383	if [[ "${actionout[$i]}" = "a" ]]
4384	then
4385	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4386	then
4387	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4388	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4389	else
4390	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4391	cat ${localout[$i]} >> ${pathout[$i]}
4392	fi
4393	fi
4394
4395	# KOPIEREN AUF LOKALER MASCHINE
4396	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4397	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4398	then
4399
4400	# KOPIEREN AUF EINPROZESSORMASCHINE
4401	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4402	then
4403	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4404	if [[ $link_local_output = true ]]
4405	then
4406	printf " using ln -f\n"
4407	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4408	fi
4409	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4410	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4411	then
4412	if [[ $link_local_output = true ]]
4413	then
4414	printf " ln failed, using cp...\n"
4415	fi
4416	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4417	fi
4418	else
4419	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4420	if [[ $link_local_output = true ]]
4421	then
4422	printf " using ln -f\n"
4423	ln -f ${localout[$i]} ${pathout[$i]}
4424	fi
4425	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4426	if [[ ! -f "${pathout[$i]}" ]]
4427	then
4428	if [[ $link_local_output = true ]]
4429	then
4430	printf " ln failed, using cp...\n"
4431	fi
4432	cp ${localout[$i]} ${pathout[$i]}
4433	fi
4434	fi
4435
4436	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4437	then
4438
4439	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4440	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4441	# WIRD DANN KOPIERT
4442	# PER MOVE UMBENANNT WERDEN
4443	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4444	if [[ $link_local_output = true ]]
4445	then
4446	printf " using ln -f\n"
4447	mkdir ${pathout[$i]}
4448	cd ${localout[$i]}
4449	for file in $(ls *)
4450	do
4451	ln -f $file ${pathout[$i]}
4452	done
4453	cd $TEMPDIR
4454	fi
4455	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4456	if [[ ! -f "${pathout[$i]}/_0000" ]]
4457	then
4458	if [[ $link_local_output = true ]]
4459	then
4460	printf " ln failed for .../_0000, using cp...\n"
4461	fi
4462	cp -r ${localout[$i]} ${pathout[$i]}
4463	fi
4464
4465	fi
4466	fi
4467	done
4468	if (( i != 0 ))
4469	then
4470	if [[ $transfer_problems = true ]]
4471	then
4472	printf "\n$striche\n *** OUTPUT-files saved"
4473	printf "\n +++ WARNING: some data transfers failed! \n"
4474	else
4475	printf "\n$striche\n *** all OUTPUT-files saved \n"
4476	fi
4477	fi
4478
4479
4480	# EVENTUELL FOLGEJOB STARTEN
4481	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4482	if [[ -f CONTINUE_RUN ]]
4483	then
4484
4485	if [[ $archive_save = true ]]
4486	then
4487
4488	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4489	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4490	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4491	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4492	# HANDEN
4493	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4494	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4495	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4496	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4497	then
4498	mc=`echo $mc \| sed 's/#/f/g'`
4499	fi
4500
4501
4502	# JOB STARTEN
4503	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4504	echo " $mc"
4505	printf "\n$striche\n"
4506	if [[ $localhost != $fromhost ]]
4507	then
4508
4509	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4510	then
4511	echo "*** ssh will be used to initiate restart-runs!"
4512	echo " return_addres=\"$return_addres\" "
4513	echo " return_username=\"$return_username\" "
4514	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4515	then
4516	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4517	else
4518	if [[ $localhost = ibmkisti ]]
4519	then
4520	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4521	else
4522	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4523	fi
4524	fi
4525	else
4526	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4527	locat=restart; exit
4528	fi
4529
4530	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4531	# DER AKTUELLE JOB ENDET
4532	if [[ $queue = special1q ]]
4533	then
4534	sleep 120
4535	else
4536	sleep 30
4537	fi
4538
4539	else
4540
4541	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4542	# RUFEN WERDEN, AUSSER AUF lcfimm
4543	cd $LOCAL_PWD
4544	if [[ $localhost = lcfimm ]]
4545	then
4546	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4547	else
4548	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4549	fi
4550	cd - > /dev/null
4551	fi
4552	printf "\n$striche\n *** restart-run initiated \n"
4553
4554
4555	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4556	# GEHOLT WORDEN SIND, LOESCHEN
4557	(( i = 0 ))
4558	while (( i < iin ))
4559	do
4560	(( i = i + 1 ))
4561	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4562	then
4563	rm -r $tmp_data_catalog/${frelin[$i]}
4564	fi
4565	done
4566
4567	else
4568
4569	printf "\n +++ no restart-run possible, since errors occured"
4570	printf "\n during the archive process"
4571	fi
4572
4573	fi
4574
4575
4576
4577	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4578	if [[ "$email_notification" != "none" ]]
4579	then
4580
4581	if [[ $localhost != $fromhost ]]
4582	then
4583	if [[ -f CONTINUE_RUN ]]
4584	then
4585	echo "PALM restart run necessary" > email_text
4586	echo "description header of actual run:" >> email_text
4587	cat CONTINUE_RUN >> email_text
4588	echo "mrun-command to restart:" >> email_text
4589	echo "$mc" >> email_text
4590	else
4591	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4592	fi
4593	mail $email_notification < email_text
4594	printf "\n *** email notification sent to \"$email_notification\" "
4595	fi
4596	fi
4597
4598
4599
4600	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4601	cd $HOME
4602	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4603
4604	else
4605
4606
4607	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4608	# CHENDE AKTIONEN DURCHGEFUEHRT
4609
4610	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4611	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4612	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4613	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4614	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4615	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4616	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4617	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4618	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4619	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4620	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4621	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4622	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4623	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4624	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4625	if [[ $use_openmp = true ]]
4626	then
4627	mrun_com=${mrun_com}" -O $threads_per_task"
4628	fi
4629	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4630	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4631	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4632	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4633	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4634	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4635	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4636	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4637	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4638	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4639	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4640	if [[ $do_remote = true ]]
4641	then
4642	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4643	fi
4644
4645
4646	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4647	jobfile=jobfile.$RANDOM
4648
4649
4650	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4651	echo "mkdir $TEMPDIR" >> $jobfile
4652	echo "cd $TEMPDIR" >> $jobfile
4653
4654
4655	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4656	if [[ $do_trace = true ]]
4657	then
4658	echo "set -x" >> $jobfile
4659	else
4660	echo "set +vx" >> $jobfile
4661	fi
4662
4663
4664	# initialize the environment and load modules
4665	if [[ "$init_cmds" != "" ]]
4666	then
4667	echo "$init_cmds" >> $jobfile
4668	fi
4669	if [[ "$module_calls" != "" ]]
4670	then
4671	echo "$module_calls" >> $jobfile
4672	fi
4673
4674
4675	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4676	# DATEI FUER DEN JOB
4677	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4678	then
4679
4680	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4681	# KOPIEREN
4682	if [[ $restart_run != true ]]
4683	then
4684	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4685	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4686	fi
4687
4688	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4689	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4690	echo "set -x" >> $jobfile
4691	if [[ $host = $localhost ]]
4692	then
4693	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4694	else
4695	if [[ $host != ibmkisti ]]
4696	then
4697	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4698	else
4699	# on KISTI's IBM firewall is only opened on interactive node
4700	echo "localdir=\`pwd\`" >> $jobfile
4701	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4702	fi
4703	fi
4704	echo "export SOURCES_COMPLETE=true" >> $jobfile
4705
4706	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4707	# ARBEITSVERZEICHNIS VERSCHIEBEN
4708	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4709	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4710	echo "execute_mrun=true" >> $jobfile
4711	echo " " >> $jobfile
4712
4713	else
4714
4715	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4716	# SOWIE GEGEBENENFALLS DES MAKEFILES
4717	if [[ $do_compile = true ]]
4718	then
4719
4720	source_catalog=SOURCES_FOR_RUN_$fname
4721
4722	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4723	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4724	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4725	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4726	echo "export SOURCES_COMPLETE=true" >> $jobfile
4727	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4728
4729	for filename in $source_list
4730	do
4731	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4732	echo "cat > $filename << \"%END%\"" >> $jobfile
4733	cat $source_catalog/$filename >> $jobfile
4734	echo " " >> $jobfile
4735	echo "%END%" >> $jobfile
4736	echo " " >> $jobfile
4737	done
4738
4739	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4740	echo "cat > Makefile << \"%END%\"" >> $jobfile
4741	cat $source_catalog/Makefile >> $jobfile
4742	echo " " >> $jobfile
4743	echo "%END%" >> $jobfile
4744	echo " " >> $jobfile
4745
4746	echo "cd - > /dev/null" >> $jobfile
4747
4748	fi
4749
4750
4751	# ABSPEICHERN DER KONFIGURATIONSDATEI
4752	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4753	echo "cat > $config_file << \"%END%\"" >> $jobfile
4754	cat $config_file >> $jobfile
4755	echo "%END%" >> $jobfile
4756	echo " " >> $jobfile
4757
4758
4759	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4760	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4761	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4762	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4763	echo "%END%" >> $jobfile
4764	echo "chmod u+x $mrun_script_name" >> $jobfile
4765	echo "execute_mrun=true" >> $jobfile
4766	echo " " >> $jobfile
4767
4768	fi
4769
4770
4771	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4772	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4773	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4774	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4775	if [[ $do_remote = true ]]
4776	then
4777	(( i = 0 ))
4778	while (( i < iin ))
4779	do
4780	(( i = i + 1 ))
4781	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4782	if [[ "${transin[$i]}" = job ]]
4783	then
4784	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4785	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4786	echo " " >> $jobfile
4787	echo "%END%" >> $jobfile
4788	else
4789	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4790	fi
4791
4792	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4793	echo "if [[ \$? = 1 ]]" >> $jobfile
4794	echo "then" >> $jobfile
4795	echo " echo \" \" " >> $jobfile
4796	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4797	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4798	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4799	echo " execute_mrun=false" >> $jobfile
4800	echo "fi" >> $jobfile
4801	done
4802	fi
4803
4804	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4805	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4806	echo "LOCAL_PWD=$working_directory" >> $jobfile
4807	echo "export LOCAL_PWD" >> $jobfile
4808
4809	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4810	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4811	echo "export LOCAL_MRUN_PATH" >> $jobfile
4812
4813	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4814	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4815	then
4816	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4817	fi
4818
4819	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4820	echo "set -x" >> $jobfile
4821	echo "queue=$queue" >> $jobfile
4822	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4823
4824	echo 'ls -al; echo `pwd`' >> $jobfile
4825	echo "cd \$HOME" >> $jobfile
4826	echo "rm -rf $TEMPDIR" >> $jobfile
4827
4828
4829
4830
4831	# JOB PER SUBJOB STARTEN
4832	if [[ $silent = false ]]
4833	then
4834	printf "\n "
4835	else
4836	printf "\n\n"
4837	fi
4838
4839	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4840	rm -rf $jobfile
4841
4842
4843	fi # ENDE REMOTE-TEIL
4844
4845
4846
4847	# ENDE DER PROZEDUR

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |