Changeset 557 for palm/trunk/DOC
- Timestamp:
- Sep 7, 2010 2:50:07 PM (14 years ago)
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palm/trunk/DOC/tec/technical_documentation.html (modified) (5 diffs)
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palm/trunk/DOC/tec/technical_documentation.html
r556 r557 1 1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN"> 2 <html><head> 3 4 5 <meta http-equiv="CONTENT-TYPE" content="text/html; charset=utf-8"><title>PALM technical/numerical documentation</title> 6 7 <meta name="GENERATOR" content="OpenOffice.org 3.0 (Unix)"> 8 <meta name="AUTHOR" content="Siegfried Raasch"> 9 <meta name="CREATED" content="0;0"> 10 <meta name="CHANGED" content="20100901;15562900"> 11 <meta name="KEYWORDS" content="parallel LES model"></head><body dir="ltr" lang="en-US"> 12 <p style="margin-bottom: 0in;"><font size="7">PALM </font>a 13 <b>pa</b>rallelized <b>L</b>ES <b>m</b>odel 14 </p> 15 <hr> 16 <p style="margin-bottom: 0in;"><br><font size="5">technical/numerical 17 documentation</font> <br> <br> 18 </p> 19 <p style="margin-bottom: 0in;" align="center"> 20 </p> 21 <table cellpadding="0" cellspacing="0"> 22 <tbody><tr> 23 <td> 24 <p><b>Current fixed release:</b></p> 25 </td> 26 <td> 27 <p><b>3.7a</b></p> 28 </td> 29 </tr> 30 <tr> 31 <td> 32 <p><b>Last change of this document</b>: </p> 33 </td> 34 <td> 35 <p><b>$Id: technical_documentation.html 544 2010-08-17 10:44:58Z 36 maronga $</b></p> 37 </td> 38 </tr> 39 </tbody></table> 40 <hr> 41 <p><font size="5">Table of contents</font> <br> <br> 42 </p> 43 <ul> 44 <p><a href="#Kapitel1.0">1.0</a> History of changes 45 </p> 46 <p><a href="#Kapitel2.0">2.0</a> How to change the source code 47 and how to document modifications</p> 48 <p><a href="#Kapitel3.0">3.0</a> Description of selected model 49 numerics<br> </p> 50 </ul> 51 <p><br><br> 52 </p> 53 <h2><a name="Kapitel1.0"></a>1.0 History of changes</h2> 54 <p style="margin-bottom: 0in;">The following table documents all 2 <HTML> 3 <HEAD> 4 <META HTTP-EQUIV="CONTENT-TYPE" CONTENT="text/html; charset=utf-8"> 5 <TITLE>PALM technical/numerical documentation</TITLE> 6 <META NAME="GENERATOR" CONTENT="OpenOffice.org 3.0 (Unix)"> 7 <META NAME="AUTHOR" CONTENT="Siegfried Raasch"> 8 <META NAME="CREATED" CONTENT="0;0"> 9 <META NAME="CHANGED" CONTENT="20100907;16492700"> 10 <META NAME="KEYWORDS" CONTENT="parallel LES model"> 11 </HEAD> 12 <BODY LANG="en-US" DIR="LTR"> 13 <P STYLE="margin-bottom: 0in"><FONT SIZE=7>PALM </FONT>a 14 <B>pa</B>rallelized <B>L</B>ES <B>m</B>odel 15 </P> 16 <HR> 17 <P STYLE="margin-bottom: 0in"><BR><FONT SIZE=5>technical/numerical 18 documentation</FONT> <BR> <BR> 19 </P> 20 <P ALIGN=CENTER STYLE="margin-bottom: 0in"> 21 </P> 22 <TABLE CELLPADDING=0 CELLSPACING=0> 23 <TR> 24 <TD> 25 <P><B>Current fixed release:</B></P> 26 </TD> 27 <TD> 28 <P><B>3.7a</B></P> 29 </TD> 30 </TR> 31 <TR> 32 <TD> 33 <P><B>Last change of this document</B>: </P> 34 </TD> 35 <TD> 36 <P><B>$Id: technical_documentation.html 544 2010-08-17 10:44:58Z 37 maronga $</B></P> 38 </TD> 39 </TR> 40 </TABLE> 41 <HR> 42 <P><FONT SIZE=5>Table of contents</FONT> <BR> <BR> 43 </P> 44 <UL> 45 <P><A HREF="#Kapitel1.0">1.0</A> History of changes 46 </P> 47 <P><A HREF="#Kapitel2.0">2.0</A> How to change the source code 48 and how to document modifications</P> 49 <P><A HREF="#Kapitel3.0">3.0</A> Description of selected model 50 numerics<BR> </P> 51 </UL> 52 <P><BR><BR> 53 </P> 54 <H2><A NAME="Kapitel1.0"></A>1.0 History of changes</H2> 55 <P STYLE="margin-bottom: 0in">The following table documents all 55 56 changes to the PALM repository since 2009. Older changes can be found 56 < a href="tec_doc_1998-2008.html">here</a>.<br><br>Entries in the57 <A HREF="tec_doc_1998-2008.html">here</A>.<BR><BR>Entries in the 57 58 fifth column specify the type of the change: change of existing 58 59 code (C), new code (N) or bugfix (B). More detailed information about 59 60 the changes may sometimes be found in the header comment lines of the 60 respective routines. <br> 61 </p> 62 <table border="1" cellpadding="2" cellspacing="3" width="1223"> 63 <col width="37"> 64 <col width="56"> 65 <col width="68"> 66 <col width="62"> 67 <col width="36"> 68 <col width="518"> 69 <col width="393"> 70 <tbody><tr> 71 <td style="width: 37px; vertical-align: top;"> 72 <p><font size="4"><b>date</b></font></p> 73 </td> 74 <td style="width: 56px; vertical-align: top;"> 75 <p><font size="4"><b>author</b></font></p> 76 </td> 77 <td style="width: 68px; vertical-align: top;"> 78 <p><font size="4"><b>svn revision</b></font></p> 79 </td> 80 <td style="width: 62px; vertical-align: top;"> 81 <p><font size="4"><b>last release</b></font></p> 82 </td> 83 <td style="width: 36px; vertical-align: top;"> 84 <p><font size="4"><b>type</b></font></p> 85 </td> 86 <td style="width: 518px; vertical-align: top;"> 87 <p><font size="4"><b>description</b></font></p> 88 </td> 89 <td style="width: 393px; vertical-align: top;"> 90 <p><font size="4"><b>affected routines</b></font></p> 91 </td> 92 </tr> 93 <tr> 94 <td style="vertical-align: top;">07/09/10<br> 95 </td> 96 <td style="vertical-align: top;">SR<br> 97 </td> 98 <td style="vertical-align: top;">556<br> 99 </td> 100 <td style="vertical-align: top;">3.7a<br> 101 </td> 102 <td style="vertical-align: top;">C<br> 103 </td> 104 <td style="vertical-align: top;">Documentation for<span style="font-family: Courier New,Courier,monospace;"> surface_heatflux </span>in case of<span style="font-family: Courier New,Courier,monospace;"> prandtl_layer </span>= <span style="font-style: italic;">.F.</span> improved.<br> 105 <br> 106 bugfix for wrong netcdf/3.6.3 module on lcsgi (mbuild, mrun)<br> 107 </td> 108 <td style="vertical-align: top;">mbuild, mrun<br> 109 </td> 110 </tr> 111 <tr> 112 <td style="vertical-align: top;"><br> 113 </td> 114 <td style="vertical-align: top;"><br> 115 </td> 116 <td style="vertical-align: top;"><br> 117 </td> 118 <td style="vertical-align: top;"><br> 119 </td> 120 <td style="vertical-align: top;">B<br> 121 </td> 122 <td style="vertical-align: top;">Bugfix in if statement (disturb_heatflux)<br> 123 <br> 124 Bugfix: in 2201 statement: closing " was missing (interpret_config)<br> 125 <br> 126 Bugfix: default setting of nzb_local for flat topography (init_grid)<br> 127 <br> 128 Bugfix: wrong dimension used for ts_value_l (user_statistics)<br> 129 </td> 130 <td style="vertical-align: top;">disturb_heatflux, init_grid, user_statistics<br> 131 <br> 132 interpret_config<br> 133 </td> 134 </tr> 135 <tr> 136 <td sdval="40187" sdnum="1033;0;MM/DD/YY" style="width: 37px; vertical-align: top;"> 137 <p style="font-weight: normal;"><font size="3">01/09/10</font></p> 138 </td> 139 <td style="width: 56px; vertical-align: top;"> 140 <p style="font-weight: normal;"><font size="3">CH</font></p> 141 </td> 142 <td sdval="553" sdnum="1033;" style="width: 68px; vertical-align: top;"> 143 <p style="font-weight: normal;"><font size="3">553</font></p> 144 </td> 145 <td style="width: 62px; vertical-align: top;"> 146 <p style="font-weight: normal;"><font size="3">3.7a</font></p> 147 </td> 148 <td style="width: 36px; vertical-align: top;"> 149 <p style="font-weight: normal;"><font size="3">C</font></p> 150 </td> 151 <td style="width: 518px; vertical-align: top;"> 152 <p style="font-weight: normal;"><font size="3">d3dpar-parameters for 153 masked output <font face="Courier New, monospace">data_output_mask_*, 61 respective routines. <BR> 62 </P> 63 <TABLE WIDTH=1223 BORDER=1 CELLPADDING=2 CELLSPACING=3> 64 <COL WIDTH=37> 65 <COL WIDTH=56> 66 <COL WIDTH=68> 67 <COL WIDTH=62> 68 <COL WIDTH=36> 69 <COL WIDTH=517> 70 <COL WIDTH=393> 71 <TR> 72 <TD WIDTH=37> 73 <P><FONT SIZE=4><B>date</B></FONT></P> 74 </TD> 75 <TD WIDTH=56> 76 <P><FONT SIZE=4><B>author</B></FONT></P> 77 </TD> 78 <TD WIDTH=68> 79 <P><FONT SIZE=4><B>svn revision</B></FONT></P> 80 </TD> 81 <TD WIDTH=62> 82 <P><FONT SIZE=4><B>last release</B></FONT></P> 83 </TD> 84 <TD WIDTH=36> 85 <P><FONT SIZE=4><B>type</B></FONT></P> 86 </TD> 87 <TD WIDTH=517> 88 <P><FONT SIZE=4><B>description</B></FONT></P> 89 </TD> 90 <TD WIDTH=393> 91 <P><FONT SIZE=4><B>affected routines</B></FONT></P> 92 </TD> 93 </TR> 94 <TR> 95 <TD WIDTH=37 SDVAL="40368" SDNUM="1033;0;MM/DD/YY"> 96 <P STYLE="font-weight: normal"><FONT SIZE=3>07/09/10</FONT></P> 97 </TD> 98 <TD WIDTH=56> 99 <P STYLE="font-weight: normal"><FONT SIZE=3>CH</FONT></P> 100 </TD> 101 <TD WIDTH=68 SDVAL="557" SDNUM="1033;"> 102 <P STYLE="font-weight: normal"><FONT SIZE=3>557</FONT></P> 103 </TD> 104 <TD WIDTH=62> 105 <P STYLE="font-weight: normal"><FONT SIZE=3>3.7a</FONT></P> 106 </TD> 107 <TD WIDTH=36> 108 <P STYLE="font-weight: normal"><FONT SIZE=3>B</FONT></P> 109 </TD> 110 <TD WIDTH=517> 111 <P STYLE="font-weight: normal"><FONT SIZE=3>Bugfix of message 112 string in if statement (dz_stretch_level) of subroutine 113 set_mask_locations.</FONT></P> 114 <P STYLE="font-weight: normal"><FONT SIZE=3>The changes concern 115 the masked data output, which is still not documented.</FONT></P> 116 </TD> 117 <TD WIDTH=393> 118 <P STYLE="font-weight: normal"><FONT SIZE=3>init_masks</FONT></P> 119 </TD> 120 </TR> 121 <TR> 122 <TD WIDTH=37> 123 <P>07/09/10</P> 124 </TD> 125 <TD WIDTH=56> 126 <P>SR</P> 127 </TD> 128 <TD WIDTH=68> 129 <P>556</P> 130 </TD> 131 <TD WIDTH=62> 132 <P>3.7a</P> 133 </TD> 134 <TD WIDTH=36> 135 <P>C</P> 136 </TD> 137 <TD WIDTH=517> 138 <P>Documentation for <FONT FACE="Courier New, Courier, monospace">surface_heatflux 139 </FONT>in case of <FONT FACE="Courier New, Courier, monospace">prandtl_layer 140 </FONT>= <I>.F.</I> improved.<BR><BR>bugfix for wrong netcdf/3.6.3 141 module on lcsgi (mbuild, mrun)</P> 142 </TD> 143 <TD WIDTH=393> 144 <P>mbuild, mrun</P> 145 </TD> 146 </TR> 147 <TR> 148 <TD WIDTH=37> 149 <P><BR> 150 </P> 151 </TD> 152 <TD WIDTH=56> 153 <P><BR> 154 </P> 155 </TD> 156 <TD WIDTH=68> 157 <P><BR> 158 </P> 159 </TD> 160 <TD WIDTH=62> 161 <P><BR> 162 </P> 163 </TD> 164 <TD WIDTH=36> 165 <P>B</P> 166 </TD> 167 <TD WIDTH=517> 168 <P>Bugfix in if statement (disturb_heatflux)<BR><BR>Bugfix: in 169 2201 statement: closing " was missing 170 (interpret_config)<BR><BR>Bugfix: default setting of nzb_local for 171 flat topography (init_grid)<BR><BR>Bugfix: wrong dimension used 172 for ts_value_l (user_statistics)</P> 173 </TD> 174 <TD WIDTH=393> 175 <P>disturb_heatflux, init_grid, user_statistics<BR><BR>interpret_config</P> 176 </TD> 177 </TR> 178 <TR> 179 <TD WIDTH=37 SDVAL="40187" SDNUM="1033;0;MM/DD/YY"> 180 <P STYLE="font-weight: normal"><FONT SIZE=3>01/09/10</FONT></P> 181 </TD> 182 <TD WIDTH=56> 183 <P STYLE="font-weight: normal"><FONT SIZE=3>CH</FONT></P> 184 </TD> 185 <TD WIDTH=68 SDVAL="553" SDNUM="1033;"> 186 <P STYLE="font-weight: normal"><FONT SIZE=3>553</FONT></P> 187 </TD> 188 <TD WIDTH=62> 189 <P STYLE="font-weight: normal"><FONT SIZE=3>3.7a</FONT></P> 190 </TD> 191 <TD WIDTH=36> 192 <P STYLE="font-weight: normal"><FONT SIZE=3>C</FONT></P> 193 </TD> 194 <TD WIDTH=517> 195 <P STYLE="font-weight: normal"><FONT SIZE=3>d3dpar-parameters for 196 masked output <FONT FACE="Courier New, monospace">data_output_mask_*, 154 197 data_output_mask_user_*, mask_*_x, mask_*_y, mask_*_z, 155 mask_*_x_loop, mask_*_y_loop </ font><font face="Times New Roman, serif">and156 </ font><font face="Courier New, monospace">mask_*_z_loop </font>have157 been replaced by corresponding arrays < font face="Courier New, monospace">data_output_masks,198 mask_*_x_loop, mask_*_y_loop </FONT><FONT FACE="Times New Roman, serif">and 199 </FONT><FONT FACE="Courier New, monospace">mask_*_z_loop </FONT>have 200 been replaced by corresponding arrays <FONT FACE="Courier New, monospace">data_output_masks, 158 201 data_output_masks_user, mask_x, mask_y, mask_z, mask_x_loop, 159 mask_y_loop </ font><font face="Times New Roman, serif">and</font><font face="Courier New, monospace">160 mask_z_loop</font></font></p>161 < p style="font-weight: normal;"><font size="3">inipar-parameter <font face="Courier New, monospace">masks</font>162 has been removed. </ font>163 </ p>164 < p style="font-weight: normal;"><font size="3">The changes concern165 the masked data output, which is still not documented.</ font></p>166 </ td>167 < td style="width: 393px; vertical-align: top;">168 < p style="font-weight: normal;"><font size="3">check_parameters,169 init_masks, modules, parin, user_parin</ font></p>170 </ td>171 </ tr>172 < tr>173 < td style="width: 37px; vertical-align: top;">174 < p>17/08/10</p>175 </ td>176 < td style="width: 56px; vertical-align: top;">177 < p>BM</p>178 </ td>179 < td style="width: 68px; vertical-align: top;">180 < p>544</p>181 </ td>182 < td style="width: 62px; vertical-align: top;">183 < p>3.7a</p>184 </ td>185 < td style="width: 36px; vertical-align: top;">186 < p>B/C/N</p>187 </ td>188 < td style="width: 518px; vertical-align: top;">189 < p>adjustments for lcxt4; bugfix (mbuild): loading of user-defined190 modules; new .mrun.config.lcxt4 for Cray XT4 in Bergen/Norway</ p>191 </ td>192 < td style="width: 393px; vertical-align: top;">193 < p>mrun, mbuild, subjob</p>194 </ td>195 </ tr>196 < tr>197 < td style="width: 37px; vertical-align: top;">198 < p>15/06/10</p>199 </ td>200 < td style="width: 56px; vertical-align: top;">201 < p>RH</p>202 </ td>203 < td style="width: 68px; vertical-align: top;">204 < p>540</p>205 </ td>206 < td style="width: 62px; vertical-align: top;">207 < p>3.7a</p>208 </ td>209 < td style="width: 36px; vertical-align: top;">210 < p>C</p>211 </ td>212 < td style="width: 518px; vertical-align: top;">213 < p>ssh from compute nodes to login nodes on hosts lcsgih/lcsgib is202 mask_y_loop </FONT><FONT FACE="Times New Roman, serif">and</FONT> 203 <FONT FACE="Courier New, monospace">mask_z_loop</FONT></FONT></P> 204 <P STYLE="font-weight: normal"><FONT SIZE=3>inipar-parameter <FONT FACE="Courier New, monospace">masks</FONT> 205 has been removed. </FONT> 206 </P> 207 <P STYLE="font-weight: normal"><FONT SIZE=3>The changes concern 208 the masked data output, which is still not documented.</FONT></P> 209 </TD> 210 <TD WIDTH=393> 211 <P STYLE="font-weight: normal"><FONT SIZE=3>check_parameters, 212 init_masks, modules, parin, user_parin</FONT></P> 213 </TD> 214 </TR> 215 <TR> 216 <TD WIDTH=37> 217 <P>17/08/10</P> 218 </TD> 219 <TD WIDTH=56> 220 <P>BM</P> 221 </TD> 222 <TD WIDTH=68> 223 <P>544</P> 224 </TD> 225 <TD WIDTH=62> 226 <P>3.7a</P> 227 </TD> 228 <TD WIDTH=36> 229 <P>B/C/N</P> 230 </TD> 231 <TD WIDTH=517> 232 <P>adjustments for lcxt4; bugfix (mbuild): loading of user-defined 233 modules; new .mrun.config.lcxt4 for Cray XT4 in Bergen/Norway</P> 234 </TD> 235 <TD WIDTH=393> 236 <P>mrun, mbuild, subjob</P> 237 </TD> 238 </TR> 239 <TR> 240 <TD WIDTH=37> 241 <P>15/06/10</P> 242 </TD> 243 <TD WIDTH=56> 244 <P>RH</P> 245 </TD> 246 <TD WIDTH=68> 247 <P>540</P> 248 </TD> 249 <TD WIDTH=62> 250 <P>3.7a</P> 251 </TD> 252 <TD WIDTH=36> 253 <P>C</P> 254 </TD> 255 <TD WIDTH=517> 256 <P>ssh from compute nodes to login nodes on hosts lcsgih/lcsgib is 214 257 done using the names hicegate0/bicegate0 instead of the IP 215 addresses</ p>216 </ td>217 < td style="width: 393px; vertical-align: top;">218 < p>mrun</p>219 </ td>220 </ tr>221 < tr>222 < td style="width: 37px; vertical-align: top;">223 < p>21/04/10</p>224 </ td>225 < td style="width: 56px; vertical-align: top;">226 < p>RH</p>227 </ td>228 < td style="width: 68px; vertical-align: top;">229 < p>532</p>230 </ td>231 < td style="width: 62px; vertical-align: top;">232 < p>3.7a</p>233 </ td>234 < td style="width: 36px; vertical-align: top;">235 < p>C</p>236 </ td>237 < td style="width: 518px; vertical-align: top;">238 < p>Large scale vertical motion (subsidence/ascent) can be added as258 addresses</P> 259 </TD> 260 <TD WIDTH=393> 261 <P>mrun</P> 262 </TD> 263 </TR> 264 <TR> 265 <TD WIDTH=37> 266 <P>21/04/10</P> 267 </TD> 268 <TD WIDTH=56> 269 <P>RH</P> 270 </TD> 271 <TD WIDTH=68> 272 <P>532</P> 273 </TD> 274 <TD WIDTH=62> 275 <P>3.7a</P> 276 </TD> 277 <TD WIDTH=36> 278 <P>C</P> 279 </TD> 280 <TD WIDTH=517> 281 <P>Large scale vertical motion (subsidence/ascent) can be added as 239 282 additional source to the prognostic equation for humidity/passive 240 scalar< br> <br>character length for dopr_unit241 enlarged< br><br>Adjustment of the NCL scripts to allow for output283 scalar<BR> <BR>character length for dopr_unit 284 enlarged<BR><BR>Adjustment of the NCL scripts to allow for output 242 285 of png files 243 </ p>244 </ td>245 < td style="width: 393px; vertical-align: top;">246 < p>modules, prognostic_equations<br><br>.ncl.config.default,247 cross_sections.ncl, profiles.ncl, timeseries.ncl, spectra.ncl</ p>248 </ td>249 </ tr>250 < tr>251 < td style="width: 37px; vertical-align: top;">252 < p><br>253 </ p>254 </ td>255 < td style="width: 56px; vertical-align: top;">256 < p><br>257 </ p>258 </ td>259 < td style="width: 68px; vertical-align: top;">260 < p><br>261 </ p>262 </ td>263 < td style="width: 62px; vertical-align: top;">264 < p><br>265 </ p>266 </ td>267 < td style="width: 36px; vertical-align: top;">268 < p>B</p>269 </ td>270 < td style="width: 518px; vertical-align: top;">271 < p>Bugfix: unit of hyp changed to dbar</p>272 </ td>273 < td style="width: 393px; vertical-align: top;">274 < p>check_parameters</p>275 </ td>276 </ tr>277 < tr>278 < td style="width: 37px; vertical-align: top;">279 < p>01/04/10</p>280 </ td>281 < td style="width: 56px; vertical-align: top;">282 < p>RH</p>283 </ td>284 < td style="width: 68px; vertical-align: top;">285 < p>530</p>286 </ td>287 < td style="width: 62px; vertical-align: top;">288 < p>3.7a</p>289 </ td>290 < td style="width: 36px; vertical-align: top;">291 < p>B</p>292 </ td>293 < td style="width: 518px; vertical-align: top;">294 < p>Bugfix: treatment of special character * in NCL variables295 containing lists corrected</ p>296 </ td>297 < td style="width: 393px; vertical-align: top;">298 < p>palmplot</p>299 </ td>300 </ tr>301 < tr>302 < td style="width: 37px; vertical-align: top;">303 < p>31/03/10</p>304 </ td>305 < td style="width: 56px; vertical-align: top;">306 < p>RH</p>307 </ td>308 < td style="width: 68px; vertical-align: top;">309 < p>529</p>310 </ td>311 < td style="width: 62px; vertical-align: top;">312 < p>3.7a</p>313 </ td>314 < td style="width: 36px; vertical-align: top;">315 < p>C</p>316 </ td>317 < td style="width: 518px; vertical-align: top;">318 < p>List of variable names have to specified using blank separated319 lists and single quotes</ p>320 </ td>321 < td style="width: 393px; vertical-align: top;">322 < p>palmplot</p>323 </ td>324 </ tr>325 < tr>326 < td style="width: 37px; vertical-align: top;">327 < p>30/03/10</p>328 </ td>329 < td style="width: 56px; vertical-align: top;">330 < p>RH</p>331 </ td>332 < td style="width: 68px; vertical-align: top;">333 < p>526</p>334 </ td>335 < td style="width: 62px; vertical-align: top;">336 < p>3.7a</p>337 </ td>338 < td style="width: 36px; vertical-align: top;">339 < p>C</p>340 </ td>341 < td style="width: 518px; vertical-align: top;">342 < p>Adjustment of the NCL scripts and <font face="Courier New, Courier, monospace">palmplot343 </ font>to allow for special characters in NetCDF variable names344 </ p>345 </ td>346 < td style="width: 393px; vertical-align: top;">347 < p>palmplot, .ncl.config.default, cross_sections.ncl,348 profiles.ncl, timeseries.ncl, spectra.ncl</ p>349 </ td>350 </ tr>351 < tr>352 < td style="width: 37px; vertical-align: top;">353 < p>30/03/10</p>354 </ td>355 < td style="width: 56px; vertical-align: top;">356 < p>SR</p>357 </ td>358 < td style="width: 68px; vertical-align: top;">359 < p>525</p>360 </ td>361 < td style="width: 62px; vertical-align: top;">362 < p>3.7a</p>363 </ td>364 < td style="width: 36px; vertical-align: top;">365 < p>B</p>366 </ td>367 < td style="width: 518px; vertical-align: top;">368 < p>Bugfix: "/"in netcdf profile variable names replaced369 by ":"</p>370 </ td>371 < td style="width: 393px; vertical-align: top;">372 < p>check_parameters</p>373 </ td>374 </ tr>375 < tr>376 < td style="width: 37px; vertical-align: top;">377 < p>19/03/10</p>378 </ td>379 < td style="width: 56px; vertical-align: top;">380 < p>SR</p>381 </ td>382 < td style="width: 68px; vertical-align: top;">383 < p>520</p>384 </ td>385 < td style="width: 62px; vertical-align: top;">386 < p>3.7a</p>387 </ td>388 < td style="width: 36px; vertical-align: top;">389 < p>N</p>390 </ td>391 < td style="width: 518px; vertical-align: top;">392 < p>NetCDF4 support for particle data. Total number of particles is393 allowed to increase during the run, when netcdf_data_format > < i>2</i>394 is used.</ p>395 </ td>396 < td style="width: 393px; vertical-align: top;">397 < p>advec_particles, check_open, netcdf</p>398 </ td>399 </ tr>400 < tr>401 < td style="width: 37px; vertical-align: top;">402 < p><br>403 </ p>404 </ td>405 < td style="width: 56px; vertical-align: top;">406 < p><br>407 </ p>408 </ td>409 < td style="width: 68px; vertical-align: top;">410 < p><br>411 </ p>412 </ td>413 < td style="width: 62px; vertical-align: top;">414 < p><br>415 </ p>416 </ td>417 < td style="width: 36px; vertical-align: top;">418 < p>C</p>419 </ td>420 < td style="width: 518px; vertical-align: top;">421 < p>Special characters like * and "are now allowed for NetCDF286 </P> 287 </TD> 288 <TD WIDTH=393> 289 <P>modules, prognostic_equations<BR><BR>.ncl.config.default, 290 cross_sections.ncl, profiles.ncl, timeseries.ncl, spectra.ncl</P> 291 </TD> 292 </TR> 293 <TR> 294 <TD WIDTH=37> 295 <P><BR> 296 </P> 297 </TD> 298 <TD WIDTH=56> 299 <P><BR> 300 </P> 301 </TD> 302 <TD WIDTH=68> 303 <P><BR> 304 </P> 305 </TD> 306 <TD WIDTH=62> 307 <P><BR> 308 </P> 309 </TD> 310 <TD WIDTH=36> 311 <P>B</P> 312 </TD> 313 <TD WIDTH=517> 314 <P>Bugfix: unit of hyp changed to dbar</P> 315 </TD> 316 <TD WIDTH=393> 317 <P>check_parameters</P> 318 </TD> 319 </TR> 320 <TR> 321 <TD WIDTH=37> 322 <P>01/04/10</P> 323 </TD> 324 <TD WIDTH=56> 325 <P>RH</P> 326 </TD> 327 <TD WIDTH=68> 328 <P>530</P> 329 </TD> 330 <TD WIDTH=62> 331 <P>3.7a</P> 332 </TD> 333 <TD WIDTH=36> 334 <P>B</P> 335 </TD> 336 <TD WIDTH=517> 337 <P>Bugfix: treatment of special character * in NCL variables 338 containing lists corrected</P> 339 </TD> 340 <TD WIDTH=393> 341 <P>palmplot</P> 342 </TD> 343 </TR> 344 <TR> 345 <TD WIDTH=37> 346 <P>31/03/10</P> 347 </TD> 348 <TD WIDTH=56> 349 <P>RH</P> 350 </TD> 351 <TD WIDTH=68> 352 <P>529</P> 353 </TD> 354 <TD WIDTH=62> 355 <P>3.7a</P> 356 </TD> 357 <TD WIDTH=36> 358 <P>C</P> 359 </TD> 360 <TD WIDTH=517> 361 <P>List of variable names have to specified using blank separated 362 lists and single quotes</P> 363 </TD> 364 <TD WIDTH=393> 365 <P>palmplot</P> 366 </TD> 367 </TR> 368 <TR> 369 <TD WIDTH=37> 370 <P>30/03/10</P> 371 </TD> 372 <TD WIDTH=56> 373 <P>RH</P> 374 </TD> 375 <TD WIDTH=68> 376 <P>526</P> 377 </TD> 378 <TD WIDTH=62> 379 <P>3.7a</P> 380 </TD> 381 <TD WIDTH=36> 382 <P>C</P> 383 </TD> 384 <TD WIDTH=517> 385 <P>Adjustment of the NCL scripts and <FONT FACE="Courier New, Courier, monospace">palmplot 386 </FONT>to allow for special characters in NetCDF variable names 387 </P> 388 </TD> 389 <TD WIDTH=393> 390 <P>palmplot, .ncl.config.default, cross_sections.ncl, 391 profiles.ncl, timeseries.ncl, spectra.ncl</P> 392 </TD> 393 </TR> 394 <TR> 395 <TD WIDTH=37> 396 <P>30/03/10</P> 397 </TD> 398 <TD WIDTH=56> 399 <P>SR</P> 400 </TD> 401 <TD WIDTH=68> 402 <P>525</P> 403 </TD> 404 <TD WIDTH=62> 405 <P>3.7a</P> 406 </TD> 407 <TD WIDTH=36> 408 <P>B</P> 409 </TD> 410 <TD WIDTH=517> 411 <P>Bugfix: "/" in netcdf profile variable names replaced 412 by ":"</P> 413 </TD> 414 <TD WIDTH=393> 415 <P>check_parameters</P> 416 </TD> 417 </TR> 418 <TR> 419 <TD WIDTH=37> 420 <P>19/03/10</P> 421 </TD> 422 <TD WIDTH=56> 423 <P>SR</P> 424 </TD> 425 <TD WIDTH=68> 426 <P>520</P> 427 </TD> 428 <TD WIDTH=62> 429 <P>3.7a</P> 430 </TD> 431 <TD WIDTH=36> 432 <P>N</P> 433 </TD> 434 <TD WIDTH=517> 435 <P>NetCDF4 support for particle data. Total number of particles is 436 allowed to increase during the run, when netcdf_data_format > <I>2</I> 437 is used.</P> 438 </TD> 439 <TD WIDTH=393> 440 <P>advec_particles, check_open, netcdf</P> 441 </TD> 442 </TR> 443 <TR> 444 <TD WIDTH=37> 445 <P><BR> 446 </P> 447 </TD> 448 <TD WIDTH=56> 449 <P><BR> 450 </P> 451 </TD> 452 <TD WIDTH=68> 453 <P><BR> 454 </P> 455 </TD> 456 <TD WIDTH=62> 457 <P><BR> 458 </P> 459 </TD> 460 <TD WIDTH=36> 461 <P>C</P> 462 </TD> 463 <TD WIDTH=517> 464 <P>Special characters like * and " are now allowed for NetCDF 422 465 variable names. Replacement of these characters has been removed 423 (routine clean_netcdf_varname removed)</ p>424 </ td>425 < td style="width: 393px; vertical-align: top;">426 < p><br>427 </ p>428 </ td>429 </ tr>430 < tr>431 < td style="width: 37px; vertical-align: top;">432 < p>18/03/10</p>433 </ td>434 < td style="width: 56px; vertical-align: top;">435 < p>SR</p>436 </ td>437 < td style="width: 68px; vertical-align: top;">438 < p>516</p>439 </ td>440 < td style="width: 62px; vertical-align: top;">441 < p>3.7a</p>442 </ td>443 < td style="width: 36px; vertical-align: top;">444 < p>N</p>445 </ td>446 < td style="width: 518px; vertical-align: top;">447 < p>Simple installation method has been documented (see chapter466 (routine clean_netcdf_varname removed)</P> 467 </TD> 468 <TD WIDTH=393> 469 <P><BR> 470 </P> 471 </TD> 472 </TR> 473 <TR> 474 <TD WIDTH=37> 475 <P>18/03/10</P> 476 </TD> 477 <TD WIDTH=56> 478 <P>SR</P> 479 </TD> 480 <TD WIDTH=68> 481 <P>516</P> 482 </TD> 483 <TD WIDTH=62> 484 <P>3.7a</P> 485 </TD> 486 <TD WIDTH=36> 487 <P>N</P> 488 </TD> 489 <TD WIDTH=517> 490 <P>Simple installation method has been documented (see chapter 448 491 5.0). Respective scripts and configuration files have been 449 updated.</ p>450 </ td>451 < td style="width: 393px; vertical-align: top;">452 < p>palm_simple_install, palm_simple_run</p>453 </ td>454 </ tr>455 < tr>456 < td style="width: 37px; vertical-align: top;">457 < p><br>458 </ p>459 </ td>460 < td style="width: 56px; vertical-align: top;">461 < p><br>462 </ p>463 </ td>464 < td style="width: 68px; vertical-align: top;">465 < p><br>466 </ p>467 </ td>468 < td style="width: 62px; vertical-align: top;">469 < p><br>470 </ p>471 </ td>472 < td style="width: 36px; vertical-align: top;">473 < p>B</p>474 </ td>475 < td style="width: 518px; vertical-align: top;">476 < p>opt=1 is forced for PGI-compiler in routine <font face="Courier New, Courier, monospace">buoyancy477 </ font>by compiler-directive. Otherwise, program aborts with478 SIGFPE.</ p>479 </ td>480 < td style="width: 393px; vertical-align: top;">481 < p>buoyancy</p>482 </ td>483 </ tr>484 < tr>485 < td style="width: 37px; vertical-align: top;">486 < p>16/03/10</p>487 </ td>488 < td style="width: 56px; vertical-align: top;">489 < p>RH</p>490 </ td>491 < td style="width: 68px; vertical-align: top;">492 < p>513</p>493 </ td>494 < td style="width: 62px; vertical-align: top;">495 < p>3.7a</p>496 </ td>497 < td style="width: 36px; vertical-align: top;">498 < p>N</p>499 </ td>500 < td style="width: 518px; vertical-align: top;">501 < p>NCL scripts can be run with the shell script <font face="Courier New, Courier, monospace">palmplot.</font></p>502 </ td>503 < td style="width: 393px; vertical-align: top;">504 < p>palmplot, .ncl.config.default, cross_sections.ncl, profiles.ncl</p>505 </ td>506 </ tr>507 < tr>508 < td style="width: 37px; vertical-align: top;">509 < p>12/03/10</p>510 </ td>511 < td style="width: 56px; vertical-align: top;">512 < p>SR</p>513 </ td>514 < td style="width: 68px; vertical-align: top;">515 < p>509</p>516 </ td>517 < td style="width: 62px; vertical-align: top;">518 < p>3.7a</p>519 </ td>520 < td style="width: 36px; vertical-align: top;">521 < p>B</p>522 </ td>523 < td style="width: 518px; vertical-align: top;">524 < p>bugfix for rev 504: remode_md was given a wrong value</p>525 </ td>526 < td style="width: 393px; vertical-align: top;">527 < p>mbuild</p>528 </ td>529 </ tr>530 < tr>531 < td style="width: 37px; vertical-align: top;">532 < p>08/03/10</p>533 </ td>534 < td style="width: 56px; vertical-align: top;">535 < p>SR</p>536 </ td>537 < td style="width: 68px; vertical-align: top;">538 < p>506</p>539 </ td>540 < td style="width: 62px; vertical-align: top;">541 < p>3.7a</p>542 </ td>543 < td style="width: 36px; vertical-align: top;">544 < p>C</p>545 </ td>546 < td style="width: 518px; vertical-align: top;">547 < p>hack for better usage of <b>mrun</b> on Kyoto computing center548 machine (< font face="Courier New, Courier, monospace">lckyoto</font>)</p>549 </ td>550 < td style="width: 393px; vertical-align: top;">551 < p>mrun</p>552 </ td>553 </ tr>554 < tr>555 < td style="width: 37px; vertical-align: top;">556 < p>03/03/10</p>557 </ td>558 < td style="width: 56px; vertical-align: top;">559 < p>SR</p>560 </ td>561 < td style="width: 68px; vertical-align: top;">562 < p>504</p>563 </ td>564 < td style="width: 62px; vertical-align: top;">565 < p>3.7a</p>566 </ td>567 < td style="width: 36px; vertical-align: top;">568 < p>C</p>569 </ td>570 < td style="width: 518px; vertical-align: top;">571 < p><font face="Courier New, Courier, monospace">combine_plot_fields</font>572 is now directly called within < b>mrun</b> and must not be given by492 updated.</P> 493 </TD> 494 <TD WIDTH=393> 495 <P>palm_simple_install, palm_simple_run</P> 496 </TD> 497 </TR> 498 <TR> 499 <TD WIDTH=37> 500 <P><BR> 501 </P> 502 </TD> 503 <TD WIDTH=56> 504 <P><BR> 505 </P> 506 </TD> 507 <TD WIDTH=68> 508 <P><BR> 509 </P> 510 </TD> 511 <TD WIDTH=62> 512 <P><BR> 513 </P> 514 </TD> 515 <TD WIDTH=36> 516 <P>B</P> 517 </TD> 518 <TD WIDTH=517> 519 <P>opt=1 is forced for PGI-compiler in routine <FONT FACE="Courier New, Courier, monospace">buoyancy 520 </FONT>by compiler-directive. Otherwise, program aborts with 521 SIGFPE.</P> 522 </TD> 523 <TD WIDTH=393> 524 <P>buoyancy</P> 525 </TD> 526 </TR> 527 <TR> 528 <TD WIDTH=37> 529 <P>16/03/10</P> 530 </TD> 531 <TD WIDTH=56> 532 <P>RH</P> 533 </TD> 534 <TD WIDTH=68> 535 <P>513</P> 536 </TD> 537 <TD WIDTH=62> 538 <P>3.7a</P> 539 </TD> 540 <TD WIDTH=36> 541 <P>N</P> 542 </TD> 543 <TD WIDTH=517> 544 <P>NCL scripts can be run with the shell script <FONT FACE="Courier New, Courier, monospace">palmplot.</FONT></P> 545 </TD> 546 <TD WIDTH=393> 547 <P>palmplot, .ncl.config.default, cross_sections.ncl, profiles.ncl</P> 548 </TD> 549 </TR> 550 <TR> 551 <TD WIDTH=37> 552 <P>12/03/10</P> 553 </TD> 554 <TD WIDTH=56> 555 <P>SR</P> 556 </TD> 557 <TD WIDTH=68> 558 <P>509</P> 559 </TD> 560 <TD WIDTH=62> 561 <P>3.7a</P> 562 </TD> 563 <TD WIDTH=36> 564 <P>B</P> 565 </TD> 566 <TD WIDTH=517> 567 <P>bugfix for rev 504: remode_md was given a wrong value</P> 568 </TD> 569 <TD WIDTH=393> 570 <P>mbuild</P> 571 </TD> 572 </TR> 573 <TR> 574 <TD WIDTH=37> 575 <P>08/03/10</P> 576 </TD> 577 <TD WIDTH=56> 578 <P>SR</P> 579 </TD> 580 <TD WIDTH=68> 581 <P>506</P> 582 </TD> 583 <TD WIDTH=62> 584 <P>3.7a</P> 585 </TD> 586 <TD WIDTH=36> 587 <P>C</P> 588 </TD> 589 <TD WIDTH=517> 590 <P>hack for better usage of <B>mrun</B> on Kyoto computing center 591 machine (<FONT FACE="Courier New, Courier, monospace">lckyoto</FONT>)</P> 592 </TD> 593 <TD WIDTH=393> 594 <P>mrun</P> 595 </TD> 596 </TR> 597 <TR> 598 <TD WIDTH=37> 599 <P>03/03/10</P> 600 </TD> 601 <TD WIDTH=56> 602 <P>SR</P> 603 </TD> 604 <TD WIDTH=68> 605 <P>504</P> 606 </TD> 607 <TD WIDTH=62> 608 <P>3.7a</P> 609 </TD> 610 <TD WIDTH=36> 611 <P>C</P> 612 </TD> 613 <TD WIDTH=517> 614 <P><FONT FACE="Courier New, Courier, monospace">combine_plot_fields</FONT> 615 is now directly called within <B>mrun</B> and must not be given by 573 616 an output command in the configuration file any more. Please 574 remove the respective output command (< font face="Courier New, Courier, monospace">OC:combine_plot_fields.x</font>)575 from your configuration file!< br><br>Utility programs576 (< font face="Courier New, Courier, monospace">combine_plot_fields</font>,577 < font face="Courier New, Courier, monospace">interpret_config</font>)578 are created by < b>mbuild</b> separately for each block in the579 configuration file. Depending on option < font face="Courier New, Courier, monospace">-K</font>,580 < b>mrun</b> is using the utility programs for the respective581 block.< br><br>Utility programs are also compiled in parallel,582 depending on variable < font face="Courier New, Courier, monospace">%mopts</font>583 in the configuration file..< br><br>Default configuration files584 updated.</ p>585 </ td>586 < td style="width: 393px; vertical-align: top;">587 < p>mbuild, mrun, UTIL/Makefile, SCRIPTS/.mrun.config.*</p>588 </ td>589 </ tr>590 < tr>591 < td style="width: 37px; vertical-align: top;">592 < p>02/03/10</p>593 </ td>594 < td style="width: 56px; vertical-align: top;">595 < p>SR</p>596 </ td>597 < td style="width: 68px; vertical-align: top;">598 < p>496</p>599 </ td>600 < td style="width: 62px; vertical-align: top;">601 < p>3.7a</p>602 </ td>603 < td style="width: 36px; vertical-align: top;">604 < p>C</p>605 </ td>606 < td style="width: 518px; vertical-align: top;">607 < p>Particle data for restart runs are only written if environment608 variable < font face="Courier New, Courier, monospace">write_binary</font>609 = < i>.T.</i>, i.e. particle data are now handled in the same way610 as the other restart data.</ p>611 </ td>612 < td style="width: 393px; vertical-align: top;">613 < p>palm</p>614 </ td>615 </ tr>616 < tr>617 < td style="width: 37px; vertical-align: top;">618 < p>01/03/10</p>619 </ td>620 < td style="width: 56px; vertical-align: top;">621 < p>SR</p>622 </ td>623 < td style="width: 68px; vertical-align: top;">624 < p>494</p>625 </ td>626 < td style="width: 62px; vertical-align: top;">627 < p>3.7a</p>628 </ td>629 < td style="width: 36px; vertical-align: top;">630 < p>N</p>631 </ td>632 < td style="width: 518px; vertical-align: top;">633 < p>Output in NetCDF4-format.<br><br>NetCDF4 allows for parallel617 remove the respective output command (<FONT FACE="Courier New, Courier, monospace">OC:combine_plot_fields.x</FONT>) 618 from your configuration file!<BR><BR>Utility programs 619 (<FONT FACE="Courier New, Courier, monospace">combine_plot_fields</FONT>, 620 <FONT FACE="Courier New, Courier, monospace">interpret_config</FONT>) 621 are created by <B>mbuild</B> separately for each block in the 622 configuration file. Depending on option <FONT FACE="Courier New, Courier, monospace">-K</FONT>, 623 <B>mrun</B> is using the utility programs for the respective 624 block.<BR><BR>Utility programs are also compiled in parallel, 625 depending on variable <FONT FACE="Courier New, Courier, monospace">%mopts</FONT> 626 in the configuration file..<BR><BR>Default configuration files 627 updated.</P> 628 </TD> 629 <TD WIDTH=393> 630 <P>mbuild, mrun, UTIL/Makefile, SCRIPTS/.mrun.config.*</P> 631 </TD> 632 </TR> 633 <TR> 634 <TD WIDTH=37> 635 <P>02/03/10</P> 636 </TD> 637 <TD WIDTH=56> 638 <P>SR</P> 639 </TD> 640 <TD WIDTH=68> 641 <P>496</P> 642 </TD> 643 <TD WIDTH=62> 644 <P>3.7a</P> 645 </TD> 646 <TD WIDTH=36> 647 <P>C</P> 648 </TD> 649 <TD WIDTH=517> 650 <P>Particle data for restart runs are only written if environment 651 variable <FONT FACE="Courier New, Courier, monospace">write_binary</FONT> 652 = <I>.T.</I>, i.e. particle data are now handled in the same way 653 as the other restart data.</P> 654 </TD> 655 <TD WIDTH=393> 656 <P>palm</P> 657 </TD> 658 </TR> 659 <TR> 660 <TD WIDTH=37> 661 <P>01/03/10</P> 662 </TD> 663 <TD WIDTH=56> 664 <P>SR</P> 665 </TD> 666 <TD WIDTH=68> 667 <P>494</P> 668 </TD> 669 <TD WIDTH=62> 670 <P>3.7a</P> 671 </TD> 672 <TD WIDTH=36> 673 <P>N</P> 674 </TD> 675 <TD WIDTH=517> 676 <P>Output in NetCDF4-format.<BR><BR>NetCDF4 allows for parallel 634 677 I/O. Also, variables are not limited in size any more (i.e. arrays 635 678 can be larger than 2GB). The new d3par-parameter 636 < font face="Courier New, Courier, monospace">netcdf_data_format</font>.can637 be used to select among the different NetCDF file formats (< i>1</i>:638 classic format, < i>2</i>: 64-bit-offset format (this is now the639 default), < i>3</i>: NetCDF4/HDF5 format, <i>4</i>: NetCDF4 format640 with NF90_CLASSIC_MODEL bit set). Setting < font face="Courier New, Courier, monospace">netcdf_data_format</font>641 > < i>2</i> only affects 2d- and 3d-output, i.e. there is no679 <FONT FACE="Courier New, Courier, monospace">netcdf_data_format</FONT>.can 680 be used to select among the different NetCDF file formats (<I>1</I>: 681 classic format, <I>2</I>: 64-bit-offset format (this is now the 682 default), <I>3</I>: NetCDF4/HDF5 format, <I>4</I>: NetCDF4 format 683 with NF90_CLASSIC_MODEL bit set). Setting <FONT FACE="Courier New, Courier, monospace">netcdf_data_format</FONT> 684 > <I>2</I> only affects 2d- and 3d-output, i.e. there is no 642 685 parallel output for profiles, time series, spectra, and particles. 643 Parallel output of particle data may realized in the future.< br><br>In686 Parallel output of particle data may realized in the future.<BR><BR>In 644 687 case of parallel output, all PEs write into one file, which means 645 that postprocessing the data with < font face="Courier New, Courier, monospace">combine_plot_fields</font>688 that postprocessing the data with <FONT FACE="Courier New, Courier, monospace">combine_plot_fields</FONT> 646 689 (merging data from single files - one per PE - into one file) is 647 690 not neccessary. In this case, flag files are automatically set, 648 telling < font face="Courier New, Courier, monospace">combine_plot_fields</font>649 that nothing is to be done.< br><br>Using NetCDF4 format requires a691 telling <FONT FACE="Courier New, Courier, monospace">combine_plot_fields</FONT> 692 that nothing is to be done.<BR><BR>Using NetCDF4 format requires a 650 693 NetCDF4/HDF library. Respective settings for -I, -L, and -l 651 694 compiler/loader options for the SGI-ICE at HLRN can be found in 652 695 the new example configuration file 653 < font face="Courier New, Courier, monospace">..../trunk/SCRIPTS/.mrun.config.imuk_ice2_netcdf4</font><br><br><b>Attention:</b><br>So696 <FONT FACE="Courier New, Courier, monospace">..../trunk/SCRIPTS/.mrun.config.imuk_ice2_netcdf4</FONT><BR><BR><B>Attention:</B><BR>So 654 697 far, NetCDF parallel I/O has only been tested a little. Further 655 698 performance optimizations may be required, especially in case of 656 699 large data sets (e.g. data chunking, or lustre file system 657 settings with < font face="Courier New, Courier, monospace">lfs658 setstripe</ font>). <b>Please report bugs and performance problems659 immediately!</ b><br><br><font face="Courier New, Courier, monospace">combine_plot_fields</font>660 outputs cpu-time needed for file merging.< br><br>Modules to be700 settings with <FONT FACE="Courier New, Courier, monospace">lfs 701 setstripe</FONT>). <B>Please report bugs and performance problems 702 immediately!</B><BR><BR><FONT FACE="Courier New, Courier, monospace">combine_plot_fields</FONT> 703 outputs cpu-time needed for file merging.<BR><BR>Modules to be 661 704 loaded for compilation (mbuild) or job execution (mrun) can/should 662 now be given in the configuration file (< font face="Courier New, Courier, monospace">.mrun.config</font>)663 using variable < font face="Courier New, Courier, monospace">modules</font>.664 Example:< br><br> <font face="Courier New, Courier, monospace">%modules 705 now be given in the configuration file (<FONT FACE="Courier New, Courier, monospace">.mrun.config</FONT>) 706 using variable <FONT FACE="Courier New, Courier, monospace">modules</FONT>. 707 Example:<BR><BR> <FONT FACE="Courier New, Courier, monospace">%modules 665 708 ifort/11.0.069:netcdf lcsgih 666 parallel</ font><br><br>This method replaces the (undocumented)667 < font face="Courier New, Courier, monospace">mpilib</font>-variable.<br><br><b>WARNING:</b><br><b>All709 parallel</FONT><BR><BR>This method replaces the (undocumented) 710 <FONT FACE="Courier New, Courier, monospace">mpilib</FONT>-variable.<BR><BR><B>WARNING:</B><BR><B>All 668 711 fixed settings of modules in the scripts mbuild, mrun, and subjob 669 have been removed! Please set the </ b><font face="Courier New, Courier, monospace"><b>modules</b></font><b>670 variable appropriately and remove the mpilib variable in your671 configuration file.< br><br></b>Compilation time can be reduced be712 have been removed! Please set the </B><FONT FACE="Courier New, Courier, monospace"><B>modules</B></FONT> 713 <B>variable appropriately and remove the mpilib variable in your 714 configuration file.<BR><BR></B>Compilation time can be reduced be 672 715 using parallel make. The number of allowed simultaneous compiler 673 716 calls (threads) is set in the configuration file using variable 674 < font face="Courier New, Courier, monospace">mopt</font>, e.g.<br><br> 675 < font face="Courier New, Courier, monospace">%mopts -j:4 676 lcsgih parallel</ font><br><br>allows a maximum of 4 routines to be717 <FONT FACE="Courier New, Courier, monospace">mopt</FONT>, e.g.<BR><BR> 718 <FONT FACE="Courier New, Courier, monospace">%mopts -j:4 719 lcsgih parallel</FONT><BR><BR>allows a maximum of 4 routines to be 677 720 compiled simultaneously (provided that the makefile does not show 678 any dependencies between these routines).</ p>679 </ td>680 < td style="width: 393px; vertical-align: top;">681 < p>check_open, check_parameters, close_file, data_output_2d,721 any dependencies between these routines).</P> 722 </TD> 723 <TD WIDTH=393> 724 <P>check_open, check_parameters, close_file, data_output_2d, 682 725 data_output_3d, header, modules, netcdf, 683 parin< br><br>combine_plot_fields<br><br>mbuild, mrun, subjob</p>684 </ td>685 </ tr>686 < tr>687 < td style="width: 37px; vertical-align: top;">688 < p><br>689 </ p>690 </ td>691 < td style="width: 56px; vertical-align: top;">692 < p><br>693 </ p>694 </ td>695 < td style="width: 68px; vertical-align: top;">696 < p><br>697 </ p>698 </ td>699 < td style="width: 62px; vertical-align: top;">700 < p><br>701 </ p>702 </ td>703 < td style="width: 36px; vertical-align: top;">704 < p>C</p>705 </ td>706 < td style="width: 518px; vertical-align: top;">707 < p>d3par-parameters <font face="Courier New, Courier, monospace">netcdf_64bit</font>708 and < font face="Courier New, Courier, monospace">netcdf_64bit_3d</font>709 have been removed. Use the new d3par-variable < font face="Courier New, Courier, monospace">netcdf_data_format</font>710 = < i>2</i> for choosing the NetCDF 64bit-offset format (this is726 parin<BR><BR>combine_plot_fields<BR><BR>mbuild, mrun, subjob</P> 727 </TD> 728 </TR> 729 <TR> 730 <TD WIDTH=37> 731 <P><BR> 732 </P> 733 </TD> 734 <TD WIDTH=56> 735 <P><BR> 736 </P> 737 </TD> 738 <TD WIDTH=68> 739 <P><BR> 740 </P> 741 </TD> 742 <TD WIDTH=62> 743 <P><BR> 744 </P> 745 </TD> 746 <TD WIDTH=36> 747 <P>C</P> 748 </TD> 749 <TD WIDTH=517> 750 <P>d3par-parameters <FONT FACE="Courier New, Courier, monospace">netcdf_64bit</FONT> 751 and <FONT FACE="Courier New, Courier, monospace">netcdf_64bit_3d</FONT> 752 have been removed. Use the new d3par-variable <FONT FACE="Courier New, Courier, monospace">netcdf_data_format</FONT> 753 = <I>2</I> for choosing the NetCDF 64bit-offset format (this is 711 754 the default from now on). The offset-format can not be set 712 independently for the 3d-output-data any more.< br><br>d3par-parameters713 < font face="Courier New, Courier, monospace">netcdf_format_mask</font>,714 < font face="Courier New, Courier, monospace">netcdf_format_mask_av</font>,715 and variables < font face="Courier New, Courier, monospace">nc_format_mask</font>,716 < font face="Courier New, Courier, monospace">format_parallel_io</font>755 independently for the 3d-output-data any more.<BR><BR>d3par-parameters 756 <FONT FACE="Courier New, Courier, monospace">netcdf_format_mask</FONT>, 757 <FONT FACE="Courier New, Courier, monospace">netcdf_format_mask_av</FONT>, 758 and variables <FONT FACE="Courier New, Courier, monospace">nc_format_mask</FONT>, 759 <FONT FACE="Courier New, Courier, monospace">format_parallel_io</FONT> 717 760 removed. They are replaced by the new parameter 718 < font face="Courier New, Courier, monospace">netcdf_data_format</font>.761 <FONT FACE="Courier New, Courier, monospace">netcdf_data_format</FONT>. 719 762 This change concerns the masked data output, which is still not 720 documented.</ p>721 </ td>722 < td style="width: 393px; vertical-align: top;">723 < p>check_open, close_file,<br>data_output_mask, header,724 init_masks, modules, parin</ p>725 </ td>726 </ tr>727 < tr>728 < td style="width: 37px; vertical-align: top;">729 < p><br>730 </ p>731 </ td>732 < td style="width: 56px; vertical-align: top;">733 < p><br>734 </ p>735 </ td>736 < td style="width: 68px; vertical-align: top;">737 < p><br>738 </ p>739 </ td>740 < td style="width: 62px; vertical-align: top;">741 < p><br>742 </ p>743 </ td>744 < td style="width: 36px; vertical-align: top;">745 < p>B</p>746 </ td>747 < td style="width: 518px; vertical-align: top;">748 < p>Bugfix in trunk/UTIL/Makefile: forgot to compile for749 interpret_config.< br><br>Bugfix: timeseries data have to be750 collected by PE0 (user_statistics).</ p>751 </ td>752 < td style="width: 393px; vertical-align: top;">753 < p>user_statistics<br><br>trunk/UTIL/Makefile</p>754 </ td>755 </ tr>756 < tr>757 < td style="width: 37px; vertical-align: top;">758 < p>05/02/10</p>759 </ td>760 < td style="width: 56px; vertical-align: top;">761 < p>SR</p>762 </ td>763 < td style="width: 68px; vertical-align: top;">764 < p>485</p>765 </ td>766 < td style="width: 62px; vertical-align: top;">767 < p>3.7a</p>768 </ td>769 < td style="width: 36px; vertical-align: top;">770 < p>B</p>771 </ td>772 < td style="width: 518px; vertical-align: top;">773 < p><font face="Courier New, Courier, monospace">ngp_3d</font>,774 < font face="Courier New, Courier, monospace">ngp_3d_inner</font>763 documented.</P> 764 </TD> 765 <TD WIDTH=393> 766 <P>check_open, close_file,<BR>data_output_mask, header, 767 init_masks, modules, parin</P> 768 </TD> 769 </TR> 770 <TR> 771 <TD WIDTH=37> 772 <P><BR> 773 </P> 774 </TD> 775 <TD WIDTH=56> 776 <P><BR> 777 </P> 778 </TD> 779 <TD WIDTH=68> 780 <P><BR> 781 </P> 782 </TD> 783 <TD WIDTH=62> 784 <P><BR> 785 </P> 786 </TD> 787 <TD WIDTH=36> 788 <P>B</P> 789 </TD> 790 <TD WIDTH=517> 791 <P>Bugfix in trunk/UTIL/Makefile: forgot to compile for 792 interpret_config.<BR><BR>Bugfix: timeseries data have to be 793 collected by PE0 (user_statistics).</P> 794 </TD> 795 <TD WIDTH=393> 796 <P>user_statistics<BR><BR>trunk/UTIL/Makefile</P> 797 </TD> 798 </TR> 799 <TR> 800 <TD WIDTH=37> 801 <P>05/02/10</P> 802 </TD> 803 <TD WIDTH=56> 804 <P>SR</P> 805 </TD> 806 <TD WIDTH=68> 807 <P>485</P> 808 </TD> 809 <TD WIDTH=62> 810 <P>3.7a</P> 811 </TD> 812 <TD WIDTH=36> 813 <P>B</P> 814 </TD> 815 <TD WIDTH=517> 816 <P><FONT FACE="Courier New, Courier, monospace">ngp_3d</FONT>, 817 <FONT FACE="Courier New, Courier, monospace">ngp_3d_inner</FONT> 775 818 changed to 64 bit. Otherwise, on large grids > 2*10**9 grid 776 819 points some global statistics (e.g. total kinetic energy) have 777 wrong values.</ p>778 </ td>779 < td style="width: 393px; vertical-align: top;">780 < p>init_3d_model, modules</p>781 </ td>782 </ tr>783 < tr>784 < td style="width: 37px; vertical-align: top;">785 < p>05/02/10</p>786 </ td>787 < td style="width: 56px; vertical-align: top;">788 < p>SR</p>789 </ td>790 < td style="width: 68px; vertical-align: top;">791 < p>484</p>792 </ td>793 < td style="width: 62px; vertical-align: top;">794 < p>3.7a</p>795 </ td>796 < td style="width: 36px; vertical-align: top;">797 < p>B</p>798 </ td>799 < td style="width: 518px; vertical-align: top;">800 < p>Typo in file headers removed ("current"instead of801 "actual").</p>802 </ td>803 < td style="width: 393px; vertical-align: top;">804 < p>many</p>805 </ td>806 </ tr>807 < tr>808 < td style="width: 37px; vertical-align: top;">809 < p>05/02/10</p>810 </ td>811 < td style="width: 56px; vertical-align: top;">812 < p>SR</p>813 </ td>814 < td style="width: 68px; vertical-align: top;">815 < p>483</p>816 </ td>817 < td style="width: 62px; vertical-align: top;">818 < p>3.7a</p>819 </ td>820 < td style="width: 36px; vertical-align: top;">821 < p>N</p>822 </ td>823 < td style="width: 518px; vertical-align: top;">824 < p><font face="Courier New, Courier, monospace">compare_palm_logs825 </ font>is additionally compiled with <b>mbuild</b> <font face="Courier New, Courier, monospace">-u</font>826 . (< font face="Courier New, Courier, monospace">Makefile</font> in827 < font face="Courier New, Courier, monospace">trunk/UTIL</font>)<br><br>make828 options (< font face="Courier New, Courier, monospace">mopts</font>)829 to be set by configuration file implemented. (< b>mrun</b>,830 < b>mbuild</b>)<br><br><font face="Courier New, Courier, monospace">humidity</font>831 = < i>.T.</i> can be used for runs with topography.832 < font face="Courier New, Courier, monospace">wall_humidityflux</font>833 and< br><font face="Courier New, Courier, monospace">wall_scalarflux</font>834 are the corresponding new inipar parameters.< br>(<font face="Courier New, Courier, monospace">check_parameters</font>,835 < font face="Courier New, Courier, monospace">init_3d_model</font>,836 < font face="Courier New, Courier, monospace">parin</font>)<br><br>Large820 wrong values.</P> 821 </TD> 822 <TD WIDTH=393> 823 <P>init_3d_model, modules</P> 824 </TD> 825 </TR> 826 <TR> 827 <TD WIDTH=37> 828 <P>05/02/10</P> 829 </TD> 830 <TD WIDTH=56> 831 <P>SR</P> 832 </TD> 833 <TD WIDTH=68> 834 <P>484</P> 835 </TD> 836 <TD WIDTH=62> 837 <P>3.7a</P> 838 </TD> 839 <TD WIDTH=36> 840 <P>B</P> 841 </TD> 842 <TD WIDTH=517> 843 <P>Typo in file headers removed ("current" instead of 844 "actual").</P> 845 </TD> 846 <TD WIDTH=393> 847 <P>many</P> 848 </TD> 849 </TR> 850 <TR> 851 <TD WIDTH=37> 852 <P>05/02/10</P> 853 </TD> 854 <TD WIDTH=56> 855 <P>SR</P> 856 </TD> 857 <TD WIDTH=68> 858 <P>483</P> 859 </TD> 860 <TD WIDTH=62> 861 <P>3.7a</P> 862 </TD> 863 <TD WIDTH=36> 864 <P>N</P> 865 </TD> 866 <TD WIDTH=517> 867 <P><FONT FACE="Courier New, Courier, monospace">compare_palm_logs 868 </FONT>is additionally compiled with <B>mbuild</B> <FONT FACE="Courier New, Courier, monospace">-u</FONT> 869 . (<FONT FACE="Courier New, Courier, monospace">Makefile</FONT> in 870 <FONT FACE="Courier New, Courier, monospace">trunk/UTIL</FONT>)<BR><BR>make 871 options (<FONT FACE="Courier New, Courier, monospace">mopts</FONT>) 872 to be set by configuration file implemented. (<B>mrun</B>, 873 <B>mbuild</B>)<BR><BR><FONT FACE="Courier New, Courier, monospace">humidity</FONT> 874 = <I>.T.</I> can be used for runs with topography. 875 <FONT FACE="Courier New, Courier, monospace">wall_humidityflux</FONT> 876 and<BR><FONT FACE="Courier New, Courier, monospace">wall_scalarflux</FONT> 877 are the corresponding new inipar parameters.<BR>(<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>, 878 <FONT FACE="Courier New, Courier, monospace">init_3d_model</FONT>, 879 <FONT FACE="Courier New, Courier, monospace">parin</FONT>)<BR><BR>Large 837 880 scale vertical motion (subsidence/ascent) can be added as 838 881 additional source to the prognostic equation for potential 839 temperature. See new parameters < font face="Courier New, Courier, monospace">large_scale_subsidence</font>,840 < font face="Courier New, Courier, monospace">ws_vertical_gradient</font>,841 and < font face="Courier New, Courier, monospace">ws_vertical_gradient_level</font>.842 (< font face="Courier New, Courier, monospace">check_parameters</font>,843 < font face="Courier New, Courier, monospace">header</font>,844 < font face="Courier New, Courier, monospace">Makefile</font>,845 < font face="Courier New, Courier, monospace">modules</font>,846 < font face="Courier New, Courier, monospace">parin</font>,847 < font face="Courier New, Courier, monospace">prognostic_equations</font>,848 < font face="Courier New, Courier, monospace">read_var_list</font>,849 < font face="Courier New, Courier, monospace">subsidence</font>,850 < font face="Courier New, Courier, monospace">write_var_list</font>)<br><br>Scripts882 temperature. See new parameters <FONT FACE="Courier New, Courier, monospace">large_scale_subsidence</FONT>, 883 <FONT FACE="Courier New, Courier, monospace">ws_vertical_gradient</FONT>, 884 and <FONT FACE="Courier New, Courier, monospace">ws_vertical_gradient_level</FONT>. 885 (<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>, 886 <FONT FACE="Courier New, Courier, monospace">header</FONT>, 887 <FONT FACE="Courier New, Courier, monospace">Makefile</FONT>, 888 <FONT FACE="Courier New, Courier, monospace">modules</FONT>, 889 <FONT FACE="Courier New, Courier, monospace">parin</FONT>, 890 <FONT FACE="Courier New, Courier, monospace">prognostic_equations</FONT>, 891 <FONT FACE="Courier New, Courier, monospace">read_var_list</FONT>, 892 <FONT FACE="Courier New, Courier, monospace">subsidence</FONT>, 893 <FONT FACE="Courier New, Courier, monospace">write_var_list</FONT>)<BR><BR>Scripts 851 894 have been updated for Cray-XT5 machine (lcxt5m) and 852 Hitachi-machine (lckyoto).< br><br>A simple method for installing895 Hitachi-machine (lckyoto).<BR><BR>A simple method for installing 853 896 and running palm (with limited features) has been added. 854 (< font face="Courier New, Courier, monospace">Makefile</font>, new855 scripts < b>palm_simple_install</b>, <b>palm_simple_run</b>)<br><br>Masked897 (<FONT FACE="Courier New, Courier, monospace">Makefile</FONT>, new 898 scripts <B>palm_simple_install</B>, <B>palm_simple_run</B>)<BR><BR>Masked 856 899 data output has been implemented but it is not documented in the 857 900 user manual so far. This feature can already use NetCDF4 file 858 901 format. (check_open, check_parameters, close_file, modules, 859 902 netcdf, parin, time_integration, user_parin, new: 860 data_output_mask, init_masks, user_data_output_mask)</ p>861 </ td>862 < td style="width: 393px; vertical-align: top;">863 < p>check_open, check parameters, close_file, header,903 data_output_mask, init_masks, user_data_output_mask)</P> 904 </TD> 905 <TD WIDTH=393> 906 <P>check_open, check parameters, close_file, header, 864 907 init_3d_model, Makefile, mbuild, modules, mrun, netcdf, parin, 865 908 prognostic_equations, read_var_list, time_integration, user_parin, 866 write_var_list< br><br><b>new:</b> data_output_mask, 909 write_var_list<BR><BR><B>new:</B> data_output_mask, 867 910 init_masks, palm_simple_install, palm_simple_run, subsidence, 868 user_data_output_mask</ p>869 </ td>870 </ tr>871 < tr>872 < td style="width: 37px; vertical-align: top;">873 < p><br>874 </ p>875 </ td>876 < td style="width: 56px; vertical-align: top;">877 < p><br>878 </ p>879 </ td>880 < td style="width: 68px; vertical-align: top;">881 < p><br>882 </ p>883 </ td>884 < td style="width: 62px; vertical-align: top;">885 < p><br>886 </ p>887 </ td>888 < td style="width: 36px; vertical-align: top;">889 < p>C</p>890 </ td>891 < td style="width: 518px; vertical-align: top;">892 < p>2d-decomposition is default for Cray-XT machines.893 (< font face="Courier New, Courier, monospace">init_pegrid</font>)<br><br><font face="Courier New, Courier, monospace">var_ts</font>894 is replaced by < font face="Courier New, Courier, monospace">dots_max</font>.895 (< font face="Courier New, Courier, monospace">modules</font>,896 < font face="Courier New, Courier, monospace">init_3d_model</font>)<br><br>Every911 user_data_output_mask</P> 912 </TD> 913 </TR> 914 <TR> 915 <TD WIDTH=37> 916 <P><BR> 917 </P> 918 </TD> 919 <TD WIDTH=56> 920 <P><BR> 921 </P> 922 </TD> 923 <TD WIDTH=68> 924 <P><BR> 925 </P> 926 </TD> 927 <TD WIDTH=62> 928 <P><BR> 929 </P> 930 </TD> 931 <TD WIDTH=36> 932 <P>C</P> 933 </TD> 934 <TD WIDTH=517> 935 <P>2d-decomposition is default for Cray-XT machines. 936 (<FONT FACE="Courier New, Courier, monospace">init_pegrid</FONT>)<BR><BR><FONT FACE="Courier New, Courier, monospace">var_ts</FONT> 937 is replaced by <FONT FACE="Courier New, Courier, monospace">dots_max</FONT>. 938 (<FONT FACE="Courier New, Courier, monospace">modules</FONT>, 939 <FONT FACE="Courier New, Courier, monospace">init_3d_model</FONT>)<BR><BR>Every 897 940 cloud droplet has now an own weighting factor and can be deleted 898 941 due to collisions. Condensation and collision of cloud droplets 899 are adjusted accordingly. (< font face="Courier New, Courier, monospace">advec_particles</font>)<br><br>Collision942 are adjusted accordingly. (<FONT FACE="Courier New, Courier, monospace">advec_particles</FONT>)<BR><BR>Collision 900 943 efficiency for large cloud droplets has changed according to table 901 of Rogers and Yau. (< font face="Courier New, Courier, monospace">collision_efficiency</font>)</p>902 </ td>903 < td style="width: 393px; vertical-align: top;">904 < p>advec_particles, collision_efficiency, init_3d_model,905 init_pegrid, modules</ p>906 </ td>907 </ tr>908 < tr>909 < td style="width: 37px; vertical-align: top;">910 < p><br>911 </ p>912 </ td>913 < td style="width: 56px; vertical-align: top;">914 < p><br>915 </ p>916 </ td>917 < td style="width: 68px; vertical-align: top;">918 < p><br>919 </ p>920 </ td>921 < td style="width: 62px; vertical-align: top;">922 < p><br>923 </ p>924 </ td>925 < td style="width: 36px; vertical-align: top;">926 < p>B</p>927 </ td>928 < td style="width: 518px; vertical-align: top;">929 < p>Bugfix for generating serial jobs. (<b>subjob</b>)<br><br>Bugfix:944 of Rogers and Yau. (<FONT FACE="Courier New, Courier, monospace">collision_efficiency</FONT>)</P> 945 </TD> 946 <TD WIDTH=393> 947 <P>advec_particles, collision_efficiency, init_3d_model, 948 init_pegrid, modules</P> 949 </TD> 950 </TR> 951 <TR> 952 <TD WIDTH=37> 953 <P><BR> 954 </P> 955 </TD> 956 <TD WIDTH=56> 957 <P><BR> 958 </P> 959 </TD> 960 <TD WIDTH=68> 961 <P><BR> 962 </P> 963 </TD> 964 <TD WIDTH=62> 965 <P><BR> 966 </P> 967 </TD> 968 <TD WIDTH=36> 969 <P>B</P> 970 </TD> 971 <TD WIDTH=517> 972 <P>Bugfix for generating serial jobs. (<B>subjob</B>)<BR><BR>Bugfix: 930 973 index problem concerning gradient_level indices removed. 931 (< font face="Courier New, Courier, monospace">header</font>)<br><br>Dimension932 of array < font face="Courier New, Courier, monospace">stat</font>974 (<FONT FACE="Courier New, Courier, monospace">header</FONT>)<BR><BR>Dimension 975 of array <FONT FACE="Courier New, Courier, monospace">stat</FONT> 933 976 in cascade change to prevent type problems with mpi2 libraries. 934 (< font face="Courier New, Courier, monospace">poisfft_hybrid</font>)<br><br>Loop977 (<FONT FACE="Courier New, Courier, monospace">poisfft_hybrid</FONT>)<BR><BR>Loop 935 978 was split to make runs reproducible when using ifort compiler. 936 (< font face="Courier New, Courier, monospace">disturb_field</font>)<br><br>Bugfix:937 exchange of ghost points for < font face="Courier New, Courier, monospace">prho</font>938 included. (< font face="Courier New, Courier, monospace">time_integration</font>)<br><br>Bugfix979 (<FONT FACE="Courier New, Courier, monospace">disturb_field</FONT>)<BR><BR>Bugfix: 980 exchange of ghost points for <FONT FACE="Courier New, Courier, monospace">prho</FONT> 981 included. (<FONT FACE="Courier New, Courier, monospace">time_integration</FONT>)<BR><BR>Bugfix 939 982 in calculation of time-averaged surface heatfluxes. 940 (< font face="Courier New, Courier, monospace">sum_up_3d_data</font>)<br><br>Bugfix983 (<FONT FACE="Courier New, Courier, monospace">sum_up_3d_data</FONT>)<BR><BR>Bugfix 941 984 in calculation of precipitation_rate. 942 (< font face="Courier New, Courier, monospace">calc_precipitation</font>)<br><br>Bugfix:985 (<FONT FACE="Courier New, Courier, monospace">calc_precipitation</FONT>)<BR><BR>Bugfix: 943 986 initial data assignments to some dvrp arrays changed due to error 944 messages from gfortran compiler. (< font face="Courier New, Courier, monospace">modules</font>)<br><br>Bugfix987 messages from gfortran compiler. (<FONT FACE="Courier New, Courier, monospace">modules</FONT>)<BR><BR>Bugfix 945 988 in calculation of cloud droplet velocity. 946 (< font face="Courier New, Courier, monospace">advec_particles</font>)<br><br>Bugfix989 (<FONT FACE="Courier New, Courier, monospace">advec_particles</FONT>)<BR><BR>Bugfix 947 990 in transfer of particles at south/left edge. 948 (< font face="Courier New, Courier, monospace">advec_particles</font>)<br><br>Bugfix949 in calculation of collision efficiency. (< font face="Courier New, Courier, monospace">collision_efficiency</font>)</p>950 </ td>951 < td style="width: 393px; vertical-align: top;">952 < p>advec_particles, calc_precipitation, collision_efficiency,991 (<FONT FACE="Courier New, Courier, monospace">advec_particles</FONT>)<BR><BR>Bugfix 992 in calculation of collision efficiency. (<FONT FACE="Courier New, Courier, monospace">collision_efficiency</FONT>)</P> 993 </TD> 994 <TD WIDTH=393> 995 <P>advec_particles, calc_precipitation, collision_efficiency, 953 996 disturb_field, header, modules, poisfft_hybrid, subjob, 954 sum_up_3d_data, time_integration</ p>955 </ td>956 </ tr>957 < tr>958 < td style="width: 37px; vertical-align: top;">959 < p>23/09/09</p>960 </ td>961 < td style="width: 56px; vertical-align: top;">962 < p>SR</p>963 </ td>964 < td style="width: 68px; vertical-align: top;">965 < p>392</p>966 </ td>967 < td style="width: 62px; vertical-align: top;">968 < p>3.7</p>969 </ td>970 < td style="width: 36px; vertical-align: top;">971 < p>N</p>972 </ td>973 < td style="width: 518px; vertical-align: top;">974 < p><b>Most important changes:</b> atmosphere-ocean coupling has997 sum_up_3d_data, time_integration</P> 998 </TD> 999 </TR> 1000 <TR> 1001 <TD WIDTH=37> 1002 <P>23/09/09</P> 1003 </TD> 1004 <TD WIDTH=56> 1005 <P>SR</P> 1006 </TD> 1007 <TD WIDTH=68> 1008 <P>392</P> 1009 </TD> 1010 <TD WIDTH=62> 1011 <P>3.7</P> 1012 </TD> 1013 <TD WIDTH=36> 1014 <P>N</P> 1015 </TD> 1016 <TD WIDTH=517> 1017 <P><B>Most important changes:</B> atmosphere-ocean coupling has 975 1018 been improved and steering of dvr-software is more user-friendly 976 1019 now. Beside that, the release contains a lot of optimizations, 977 1020 changes, and bugfixes which have accumulated over the last 978 months.< br><br>The atmosphere-ocean coupling allows to use1021 months.<BR><BR>The atmosphere-ocean coupling allows to use 979 1022 independent precursor runs in order to account for different 980 1023 spin-up times. The time when coupling has to be started is given 981 by new inipar parameter < font face="Courier New, Courier, monospace">coupling_start_time</font>.982 The precursor ocean run has to be started using new < b>mrun</b>983 option "<font face="Courier New, Courier, monospace">-y</font>"984 in order to add the appendix "<font face="Courier New, Courier, monospace">_O</font>"985 to all output files. (< font face="Courier New, Courier, monospace">check_for_restart</font>,986 < font face="Courier New, Courier, monospace">check_parameters</font>,987 < font face="Courier New, Courier, monospace">data_output_2d</font>,988 < font face="Courier New, Courier, monospace">data_output_3d</font>,989 < font face="Courier New, Courier, monospace">data_output_profiles</font>,990 < font face="Courier New, Courier, monospace">data_output_ptseries</font>,991 < font face="Courier New, Courier, monospace">data_output_spectra</font>,992 < font face="Courier New, Courier, monospace">data_output_tseries</font>,993 < font face="Courier New, Courier, monospace">header</font>,994 < font face="Courier New, Courier, monospace">init_coupling</font>,995 < font face="Courier New, Courier, monospace">modules</font>, <font face="Courier New, Courier, monospace">mrun</font>,996 < font face="Courier New, Courier, monospace">parin</font>,997 < font face="Courier New, Courier, monospace">read_var_list</font>,998 < font face="Courier New, Courier, monospace">surface_coupler</font>,999 < font face="Courier New, Courier, monospace">time_integration</font>,1000 < font face="Courier New, Courier, monospace">write_var_list</font>)<br><br>Clipping1024 by new inipar parameter <FONT FACE="Courier New, Courier, monospace">coupling_start_time</FONT>. 1025 The precursor ocean run has to be started using new <B>mrun</B> 1026 option "<FONT FACE="Courier New, Courier, monospace">-y</FONT>" 1027 in order to add the appendix "<FONT FACE="Courier New, Courier, monospace">_O</FONT>" 1028 to all output files. (<FONT FACE="Courier New, Courier, monospace">check_for_restart</FONT>, 1029 <FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>, 1030 <FONT FACE="Courier New, Courier, monospace">data_output_2d</FONT>, 1031 <FONT FACE="Courier New, Courier, monospace">data_output_3d</FONT>, 1032 <FONT FACE="Courier New, Courier, monospace">data_output_profiles</FONT>, 1033 <FONT FACE="Courier New, Courier, monospace">data_output_ptseries</FONT>, 1034 <FONT FACE="Courier New, Courier, monospace">data_output_spectra</FONT>, 1035 <FONT FACE="Courier New, Courier, monospace">data_output_tseries</FONT>, 1036 <FONT FACE="Courier New, Courier, monospace">header</FONT>, 1037 <FONT FACE="Courier New, Courier, monospace">init_coupling</FONT>, 1038 <FONT FACE="Courier New, Courier, monospace">modules</FONT>, <FONT FACE="Courier New, Courier, monospace">mrun</FONT>, 1039 <FONT FACE="Courier New, Courier, monospace">parin</FONT>, 1040 <FONT FACE="Courier New, Courier, monospace">read_var_list</FONT>, 1041 <FONT FACE="Courier New, Courier, monospace">surface_coupler</FONT>, 1042 <FONT FACE="Courier New, Courier, monospace">time_integration</FONT>, 1043 <FONT FACE="Courier New, Courier, monospace">write_var_list</FONT>)<BR><BR>Clipping 1001 1044 of dvrp output implemented. Default colourtable for particles 1002 1045 implemented, particle attributes (color, dvrp_size) can be set 1003 with new parameters < font face="Courier New, Courier, monospace">particle_color</font>,1004 < font face="Courier New, Courier, monospace">particle_dvrpsize</font>,1005 < font face="Courier New, Courier, monospace">color_interval</font>,1006 < font face="Courier New, Courier, monospace">dvrpsize_interval</font>.1046 with new parameters <FONT FACE="Courier New, Courier, monospace">particle_color</FONT>, 1047 <FONT FACE="Courier New, Courier, monospace">particle_dvrpsize</FONT>, 1048 <FONT FACE="Courier New, Courier, monospace">color_interval</FONT>, 1049 <FONT FACE="Courier New, Courier, monospace">dvrpsize_interval</FONT>. 1007 1050 Slicer attributes (dvrp) are set with new routine 1008 < font face="Courier New, Courier, monospace">set_slicer_attributes_dvrp</font>1009 and are controlled with existing parameters < font face="Courier New, Courier, monospace">slicer_range_limits</font>.1010 (< font face="Courier New, Courier, monospace">init_dvrp</font>,1011 < font face="Courier New, Courier, monospace">data_output_dvrp</font>,1012 < font face="Courier New, Courier, monospace">modules</font>,1013 < font face="Courier New, Courier, monospace">set_slicer_attributes_dvrp</font>, 1014 < font face="Courier New, Courier, monospace">user_data_output_dvrp</font>)<br><br>Polygon1051 <FONT FACE="Courier New, Courier, monospace">set_slicer_attributes_dvrp</FONT> 1052 and are controlled with existing parameters <FONT FACE="Courier New, Courier, monospace">slicer_range_limits</FONT>. 1053 (<FONT FACE="Courier New, Courier, monospace">init_dvrp</FONT>, 1054 <FONT FACE="Courier New, Courier, monospace">data_output_dvrp</FONT>, 1055 <FONT FACE="Courier New, Courier, monospace">modules</FONT>, 1056 <FONT FACE="Courier New, Courier, monospace">set_slicer_attributes_dvrp</FONT>, 1057 <FONT FACE="Courier New, Courier, monospace">user_data_output_dvrp</FONT>)<BR><BR>Polygon 1015 1058 reduction for topography and ground plate isosurface. Reduction 1016 1059 level for buildings can be chosen with parameter cluster_size. 1017 (< font face="Courier New, Courier, monospace">init_dvrp</font>)<br><br>Variables1018 < font face="Courier New, Courier, monospace">bc_lr</font> / <font face="Courier New, Courier, monospace">bc_ns</font> 1060 (<FONT FACE="Courier New, Courier, monospace">init_dvrp</FONT>)<BR><BR>Variables 1061 <FONT FACE="Courier New, Courier, monospace">bc_lr</FONT> / <FONT FACE="Courier New, Courier, monospace">bc_ns</FONT> 1019 1062 in most subroutines replaced by LOGICAL variables 1020 < font face="Courier New, Courier, monospace">bc_lr_cyc</font>,<br><font face="Courier New, Courier, monospace">bc_ns_cyc</font>1063 <FONT FACE="Courier New, Courier, monospace">bc_lr_cyc</FONT>,<BR><FONT FACE="Courier New, Courier, monospace">bc_ns_cyc</FONT> 1021 1064 for speed optimization. This gives a significant speedup of more 1022 than 10%. (< font face="Courier New, Courier, monospace">check_parameters</font>,1023 < font face="Courier New, Courier, monospace">diffusion_u</font>,1024 < font face="Courier New, Courier, monospace">diffusion_v</font>,1025 < font face="Courier New, Courier, monospace">diffusion_w</font>,1026 < font face="Courier New, Courier, monospace">modules</font>)<br><br>Scripts1027 have been adapted for machine lck (Yonsei Univ.). (< font face="Courier New, Courier, monospace">mrun</font>,1028 < font face="Courier New, Courier, monospace">mbuild</font>,1029 < font face="Courier New, Courier, monospace">subjob</font>)<br><br>Additional1065 than 10%. (<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>, 1066 <FONT FACE="Courier New, Courier, monospace">diffusion_u</FONT>, 1067 <FONT FACE="Courier New, Courier, monospace">diffusion_v</FONT>, 1068 <FONT FACE="Courier New, Courier, monospace">diffusion_w</FONT>, 1069 <FONT FACE="Courier New, Courier, monospace">modules</FONT>)<BR><BR>Scripts 1070 have been adapted for machine lck (Yonsei Univ.). (<FONT FACE="Courier New, Courier, monospace">mrun</FONT>, 1071 <FONT FACE="Courier New, Courier, monospace">mbuild</FONT>, 1072 <FONT FACE="Courier New, Courier, monospace">subjob</FONT>)<BR><BR>Additional 1030 1073 timestep criterion in case of simulations with plant canopy. 1031 (< font face="Courier New, Courier, monospace">timestep</font>)<br><br>Check1032 for illegal entries in < font face="Courier New, Courier, monospace">section_xy</font>|<font face="Courier New, Courier, monospace">xz</font>|<font face="Courier New, Courier, monospace">yz</font>1033 that exceed < font face="Courier New, Courier, monospace">nz+1</font>|<font face="Courier New, Courier, monospace">ny+1</font>|<font face="Courier New, Courier, monospace">nx+1</font>.1034 (< font face="Courier New, Courier, monospace">check_parameters</font>)<br><br>External1035 pressure gradient can be used as driving force. (< font face="Courier New, Courier, monospace">check_parameters</font>,1036 < font face="Courier New, Courier, monospace">header</font>,1037 < font face="Courier New, Courier, monospace">init_3d_model</font>,1038 < font face="Courier New, Courier, monospace">modules</font>,1039 < font face="Courier New, Courier, monospace">parin</font>,1040 < font face="Courier New, Courier, monospace">prognostic_equations</font>,1041 < font face="Courier New, Courier, monospace">read_var_list</font>,1042 < font face="Courier New, Courier, monospace">write_var_list</font>)<br><br>New1043 topography case '< i>single_street_canyon</i>'. (<font face="Courier New, Courier, monospace">header</font>,1044 < font face="Courier New, Courier, monospace">init_grid</font>,1045 < font face="Courier New, Courier, monospace">modules</font>,1046 < font face="Courier New, Courier, monospace">parin</font>,1047 < font face="Courier New, Courier, monospace">read_var_list</font>,1048 < font face="Courier New, Courier, monospace">user_check_parameters</font>,1049 < font face="Courier New, Courier, monospace">user_header</font>,1050 < font face="Courier New, Courier, monospace">user_init_grid</font>,1051 < font face="Courier New, Courier, monospace">write_var_list</font>)<br><br>Option1052 to predefine a target bulk velocity for < font face="Courier New, Courier, monospace">conserve_volume_flow</font>.1053 (< font face="Courier New, Courier, monospace">check_parameters</font>,1054 < font face="Courier New, Courier, monospace">header</font>,1055 < font face="Courier New, Courier, monospace">init_3d_model</font>,1056 < font face="Courier New, Courier, monospace">modules</font>,1057 < font face="Courier New, Courier, monospace">parin</font>,1058 < font face="Courier New, Courier, monospace">read_var_list</font>,1059 < font face="Courier New, Courier, monospace">write_var_list</font>)<br><br>Option1060 for user defined 2D data output in xy cross sections at z=< font face="Courier New, Courier, monospace">nzb</font>+1.1061 (< font face="Courier New, Courier, monospace">data_output_2d</font>,1062 < font face="Courier New, Courier, monospace">user_data_output_2d</font>)<br><br>xy1074 (<FONT FACE="Courier New, Courier, monospace">timestep</FONT>)<BR><BR>Check 1075 for illegal entries in <FONT FACE="Courier New, Courier, monospace">section_xy</FONT>|<FONT FACE="Courier New, Courier, monospace">xz</FONT>|<FONT FACE="Courier New, Courier, monospace">yz</FONT> 1076 that exceed <FONT FACE="Courier New, Courier, monospace">nz+1</FONT>|<FONT FACE="Courier New, Courier, monospace">ny+1</FONT>|<FONT FACE="Courier New, Courier, monospace">nx+1</FONT>. 1077 (<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>)<BR><BR>External 1078 pressure gradient can be used as driving force. (<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>, 1079 <FONT FACE="Courier New, Courier, monospace">header</FONT>, 1080 <FONT FACE="Courier New, Courier, monospace">init_3d_model</FONT>, 1081 <FONT FACE="Courier New, Courier, monospace">modules</FONT>, 1082 <FONT FACE="Courier New, Courier, monospace">parin</FONT>, 1083 <FONT FACE="Courier New, Courier, monospace">prognostic_equations</FONT>, 1084 <FONT FACE="Courier New, Courier, monospace">read_var_list</FONT>, 1085 <FONT FACE="Courier New, Courier, monospace">write_var_list</FONT>)<BR><BR>New 1086 topography case '<I>single_street_canyon</I>'. (<FONT FACE="Courier New, Courier, monospace">header</FONT>, 1087 <FONT FACE="Courier New, Courier, monospace">init_grid</FONT>, 1088 <FONT FACE="Courier New, Courier, monospace">modules</FONT>, 1089 <FONT FACE="Courier New, Courier, monospace">parin</FONT>, 1090 <FONT FACE="Courier New, Courier, monospace">read_var_list</FONT>, 1091 <FONT FACE="Courier New, Courier, monospace">user_check_parameters</FONT>, 1092 <FONT FACE="Courier New, Courier, monospace">user_header</FONT>, 1093 <FONT FACE="Courier New, Courier, monospace">user_init_grid</FONT>, 1094 <FONT FACE="Courier New, Courier, monospace">write_var_list</FONT>)<BR><BR>Option 1095 to predefine a target bulk velocity for <FONT FACE="Courier New, Courier, monospace">conserve_volume_flow</FONT>. 1096 (<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>, 1097 <FONT FACE="Courier New, Courier, monospace">header</FONT>, 1098 <FONT FACE="Courier New, Courier, monospace">init_3d_model</FONT>, 1099 <FONT FACE="Courier New, Courier, monospace">modules</FONT>, 1100 <FONT FACE="Courier New, Courier, monospace">parin</FONT>, 1101 <FONT FACE="Courier New, Courier, monospace">read_var_list</FONT>, 1102 <FONT FACE="Courier New, Courier, monospace">write_var_list</FONT>)<BR><BR>Option 1103 for user defined 2D data output in xy cross sections at z=<FONT FACE="Courier New, Courier, monospace">nzb</FONT>+1. 1104 (<FONT FACE="Courier New, Courier, monospace">data_output_2d</FONT>, 1105 <FONT FACE="Courier New, Courier, monospace">user_data_output_2d</FONT>)<BR><BR>xy 1063 1106 cross section output of surface heatfluxes (sensible and latent). 1064 (< font face="Courier New, Courier, monospace">average_3d_data</font>,1065 < font face="Courier New, Courier, monospace">check_parameters</font>,1066 < font face="Courier New, Courier, monospace">data_output_2d</font>,1067 < font face="Courier New, Courier, monospace">modules</font>,1068 < font face="Courier New, Courier, monospace">read_3d_binary</font>,1069 < font face="Courier New, Courier, monospace">sum_up_3d_data</font>,1070 < font face="Courier New, Courier, monospace">write_3d_binary</font>)</p>1071 </ td>1072 < td style="width: 393px; vertical-align: top;">1073 < p>average_3d_data, check_for_restart, check_parameters,1107 (<FONT FACE="Courier New, Courier, monospace">average_3d_data</FONT>, 1108 <FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>, 1109 <FONT FACE="Courier New, Courier, monospace">data_output_2d</FONT>, 1110 <FONT FACE="Courier New, Courier, monospace">modules</FONT>, 1111 <FONT FACE="Courier New, Courier, monospace">read_3d_binary</FONT>, 1112 <FONT FACE="Courier New, Courier, monospace">sum_up_3d_data</FONT>, 1113 <FONT FACE="Courier New, Courier, monospace">write_3d_binary</FONT>)</P> 1114 </TD> 1115 <TD WIDTH=393> 1116 <P>average_3d_data, check_for_restart, check_parameters, 1074 1117 data_output_2d, data_output_3d, data_output_dvrp, 1075 1118 data_output_profiles, data_output_ptseries, data_output_spectra, … … 1080 1123 surface_coupler, timestep, time_integration, 1081 1124 user_check_parameters, user_data_output_2d, user_data_output_dvrp, 1082 user_header, user_init_grid, write_3d_binary, write_var_list< br><br><b>new:</b>1083 set_particle_attributes, set_slicer_attributes_dvrp</ p>1084 </ td>1085 </ tr>1086 < tr>1087 < td style="width: 37px; vertical-align: top;">1088 < p><br>1089 </ p>1090 </ td>1091 < td style="width: 56px; vertical-align: top;">1092 < p><br>1093 </ p>1094 </ td>1095 < td style="width: 68px; vertical-align: top;">1096 < p><br>1097 </ p>1098 </ td>1099 < td style="width: 62px; vertical-align: top;">1100 < p><br>1101 </ p>1102 </ td>1103 < td style="width: 36px; vertical-align: top;">1104 < p>C</p>1105 </ td>1106 < td style="width: 518px; vertical-align: top;">1107 < p>Output of messages replaced by message handling routine.1108 (< font face="Courier New, Courier, monospace">advec_particles</font>,1109 < font face="Courier New, Courier, monospace">advec_s_bc</font>,1110 < font face="Courier New, Courier, monospace">buoyancy</font>,1111 < font face="Courier New, Courier, monospace">calc_spectra</font>,1112 < font face="Courier New, Courier, monospace">check_for_restart</font>,1113 < font face="Courier New, Courier, monospace">check_open</font>,1114 < font face="Courier New, Courier, monospace">coriolis</font>,1115 < font face="Courier New, Courier, monospace">cpu_log</font>,1116 < font face="Courier New, Courier, monospace">data_output_2d</font>,1117 < font face="Courier New, Courier, monospace">data_output_3d</font>,1118 < font face="Courier New, Courier, monospace">data_output_dvrp</font>,1119 < font face="Courier New, Courier, monospace">data_output_profiles</font>,1120 < font face="Courier New, Courier, monospace">data_output_spectra</font>,1121 < font face="Courier New, Courier, monospace">fft_xy</font>,1122 < font face="Courier New, Courier, monospace">flow_statistics</font>,1123 < font face="Courier New, Courier, monospace">header</font>, 1124 < font face="Courier New, Courier, monospace">init_1d_model</font>,1125 < font face="Courier New, Courier, monospace">init_3d_model</font>,1126 < font face="Courier New, Courier, monospace">init_dvrp</font>,1127 < font face="Courier New, Courier, monospace">init_grid</font>,1128 < font face="Courier New, Courier, monospace">init_particles</font>,1129 < font face="Courier New, Courier, monospace">init_pegrid</font>,1130 < font face="Courier New, Courier, monospace">netcdf</font>, <font face="Courier New, Courier, monospace">parin</font>,1131 < font face="Courier New, Courier, monospace">plant_canopy_model</font>,1132 < font face="Courier New, Courier, monospace">poisfft_hybrid</font>,1133 < font face="Courier New, Courier, monospace">poismg</font>,1134 < font face="Courier New, Courier, monospace">read_3d_binary</font>,1135 < font face="Courier New, Courier, monospace">read_var_list</font>,1136 < font face="Courier New, Courier, monospace">surface_coupler</font>,1137 < font face="Courier New, Courier, monospace">temperton_fft</font>,1138 < font face="Courier New, Courier, monospace">timestep</font>,1139 < font face="Courier New, Courier, monospace">user_actions</font>,1140 < font face="Courier New, Courier, monospace">user_data_output_dvrp</font>,1141 < font face="Courier New, Courier, monospace">user_dvrp_coltab</font>,1142 < font face="Courier New, Courier, monospace">user_init_grid</font>,1143 < font face="Courier New, Courier, monospace">user_init_plant_canopy</font>,1144 < font face="Courier New, Courier, monospace">user_parin</font>,1145 < font face="Courier New, Courier, monospace">user_read_restart_data</font>,1146 < font face="Courier New, Courier, monospace">user_spectra</font>)<br><br>Output1125 user_header, user_init_grid, write_3d_binary, write_var_list<BR><BR><B>new:</B> 1126 set_particle_attributes, set_slicer_attributes_dvrp</P> 1127 </TD> 1128 </TR> 1129 <TR> 1130 <TD WIDTH=37> 1131 <P><BR> 1132 </P> 1133 </TD> 1134 <TD WIDTH=56> 1135 <P><BR> 1136 </P> 1137 </TD> 1138 <TD WIDTH=68> 1139 <P><BR> 1140 </P> 1141 </TD> 1142 <TD WIDTH=62> 1143 <P><BR> 1144 </P> 1145 </TD> 1146 <TD WIDTH=36> 1147 <P>C</P> 1148 </TD> 1149 <TD WIDTH=517> 1150 <P>Output of messages replaced by message handling routine. 1151 (<FONT FACE="Courier New, Courier, monospace">advec_particles</FONT>, 1152 <FONT FACE="Courier New, Courier, monospace">advec_s_bc</FONT>, 1153 <FONT FACE="Courier New, Courier, monospace">buoyancy</FONT>, 1154 <FONT FACE="Courier New, Courier, monospace">calc_spectra</FONT>, 1155 <FONT FACE="Courier New, Courier, monospace">check_for_restart</FONT>, 1156 <FONT FACE="Courier New, Courier, monospace">check_open</FONT>, 1157 <FONT FACE="Courier New, Courier, monospace">coriolis</FONT>, 1158 <FONT FACE="Courier New, Courier, monospace">cpu_log</FONT>, 1159 <FONT FACE="Courier New, Courier, monospace">data_output_2d</FONT>, 1160 <FONT FACE="Courier New, Courier, monospace">data_output_3d</FONT>, 1161 <FONT FACE="Courier New, Courier, monospace">data_output_dvrp</FONT>, 1162 <FONT FACE="Courier New, Courier, monospace">data_output_profiles</FONT>, 1163 <FONT FACE="Courier New, Courier, monospace">data_output_spectra</FONT>, 1164 <FONT FACE="Courier New, Courier, monospace">fft_xy</FONT>, 1165 <FONT FACE="Courier New, Courier, monospace">flow_statistics</FONT>, 1166 <FONT FACE="Courier New, Courier, monospace">header</FONT>, 1167 <FONT FACE="Courier New, Courier, monospace">init_1d_model</FONT>, 1168 <FONT FACE="Courier New, Courier, monospace">init_3d_model</FONT>, 1169 <FONT FACE="Courier New, Courier, monospace">init_dvrp</FONT>, 1170 <FONT FACE="Courier New, Courier, monospace">init_grid</FONT>, 1171 <FONT FACE="Courier New, Courier, monospace">init_particles</FONT>, 1172 <FONT FACE="Courier New, Courier, monospace">init_pegrid</FONT>, 1173 <FONT FACE="Courier New, Courier, monospace">netcdf</FONT>, <FONT FACE="Courier New, Courier, monospace">parin</FONT>, 1174 <FONT FACE="Courier New, Courier, monospace">plant_canopy_model</FONT>, 1175 <FONT FACE="Courier New, Courier, monospace">poisfft_hybrid</FONT>, 1176 <FONT FACE="Courier New, Courier, monospace">poismg</FONT>, 1177 <FONT FACE="Courier New, Courier, monospace">read_3d_binary</FONT>, 1178 <FONT FACE="Courier New, Courier, monospace">read_var_list</FONT>, 1179 <FONT FACE="Courier New, Courier, monospace">surface_coupler</FONT>, 1180 <FONT FACE="Courier New, Courier, monospace">temperton_fft</FONT>, 1181 <FONT FACE="Courier New, Courier, monospace">timestep</FONT>, 1182 <FONT FACE="Courier New, Courier, monospace">user_actions</FONT>, 1183 <FONT FACE="Courier New, Courier, monospace">user_data_output_dvrp</FONT>, 1184 <FONT FACE="Courier New, Courier, monospace">user_dvrp_coltab</FONT>, 1185 <FONT FACE="Courier New, Courier, monospace">user_init_grid</FONT>, 1186 <FONT FACE="Courier New, Courier, monospace">user_init_plant_canopy</FONT>, 1187 <FONT FACE="Courier New, Courier, monospace">user_parin</FONT>, 1188 <FONT FACE="Courier New, Courier, monospace">user_read_restart_data</FONT>, 1189 <FONT FACE="Courier New, Courier, monospace">user_spectra</FONT>)<BR><BR>Output 1147 1190 of NetCDF messages with aid of message handling routine. 1148 (< font face="Courier New, Courier, monospace">check_open</font>,1149 < font face="Courier New, Courier, monospace">close_file</font>,1150 < font face="Courier New, Courier, monospace">data_output_2d</font>,1151 < font face="Courier New, Courier, monospace">data_output_3d</font>,1152 < font face="Courier New, Courier, monospace">data_output_profiles</font>,1153 < font face="Courier New, Courier, monospace">data_output_ptseries</font>,1154 < font face="Courier New, Courier, monospace">data_output_spectra</font>, 1155 < font face="Courier New, Courier, monospace">data_output_tseries</font>,1156 < font face="Courier New, Courier, monospace">netcdf</font>)<br><br>__lcmuk1191 (<FONT FACE="Courier New, Courier, monospace">check_open</FONT>, 1192 <FONT FACE="Courier New, Courier, monospace">close_file</FONT>, 1193 <FONT FACE="Courier New, Courier, monospace">data_output_2d</FONT>, 1194 <FONT FACE="Courier New, Courier, monospace">data_output_3d</FONT>, 1195 <FONT FACE="Courier New, Courier, monospace">data_output_profiles</FONT>, 1196 <FONT FACE="Courier New, Courier, monospace">data_output_ptseries</FONT>, 1197 <FONT FACE="Courier New, Courier, monospace">data_output_spectra</FONT>, 1198 <FONT FACE="Courier New, Courier, monospace">data_output_tseries</FONT>, 1199 <FONT FACE="Courier New, Courier, monospace">netcdf</FONT>)<BR><BR>__lcmuk 1157 1200 changed to __lc to avoid problems with Intel compiler on sgi-ice. 1158 (< font face="Courier New, Courier, monospace">poisfft</font>)<br><br>For1201 (<FONT FACE="Courier New, Courier, monospace">poisfft</FONT>)<BR><BR>For 1159 1202 extended NetCDF files, the updated title attribute includes an 1160 update of time_average_text where appropriate. (< font face="Courier New, Courier, monospace">netcdf</font>)<br><br>In1203 update of time_average_text where appropriate. (<FONT FACE="Courier New, Courier, monospace">netcdf</FONT>)<BR><BR>In 1161 1204 case of restart runs without extension, initial profiles are not 1162 1205 written to NetCDF-file anymore. So far, time axis always started 1163 at t=0. (< font face="Courier New, Courier, monospace">data_output_profiles</font>,1164 < font face="Courier New, Courier, monospace">modules</font>,1165 < font face="Courier New, Courier, monospace">read_var_list</font>,1166 < font face="Courier New, Courier, monospace">write_var_list</font>)<br><br><font face="Courier New, Courier, monospace">initializing_actions</font>='<i>read_data_for_recycling</i>'1167 renamed to '< i>cyclic_fill</i>'. A cyclic fill can now <br>be used1168 independent of < font face="Courier New, Courier, monospace">turbulent_inflow</font>.1169 (< font face="Courier New, Courier, monospace">check_parameters</font>,1170 < font face="Courier New, Courier, monospace">header</font>,1171 < font face="Courier New, Courier, monospace">init_3d_model</font>)<br><br>21172 NetCDF error numbers changed. (< font face="Courier New, Courier, monospace">data_output_3d</font>)<br><br>A1206 at t=0. (<FONT FACE="Courier New, Courier, monospace">data_output_profiles</FONT>, 1207 <FONT FACE="Courier New, Courier, monospace">modules</FONT>, 1208 <FONT FACE="Courier New, Courier, monospace">read_var_list</FONT>, 1209 <FONT FACE="Courier New, Courier, monospace">write_var_list</FONT>)<BR><BR><FONT FACE="Courier New, Courier, monospace">initializing_actions</FONT>='<I>read_data_for_recycling</I>' 1210 renamed to '<I>cyclic_fill</I>'. A cyclic fill can now <BR>be used 1211 independent of <FONT FACE="Courier New, Courier, monospace">turbulent_inflow</FONT>. 1212 (<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>, 1213 <FONT FACE="Courier New, Courier, monospace">header</FONT>, 1214 <FONT FACE="Courier New, Courier, monospace">init_3d_model</FONT>)<BR><BR>2 1215 NetCDF error numbers changed. (<FONT FACE="Courier New, Courier, monospace">data_output_3d</FONT>)<BR><BR>A 1173 1216 link to the webspage appendix_a.html is printed for further 1174 1217 information about possible reasons of the error that appeared. 1175 (message)< br><br>Temperature gradient criterion for estimating the1218 (message)<BR><BR>Temperature gradient criterion for estimating the 1176 1219 boundary layer height replaced by the gradient criterion of 1177 Sullivan et al. (1998). (< font face="Courier New, Courier, monospace">flow_statistics</font>)<br><br>NetCDF1220 Sullivan et al. (1998). (<FONT FACE="Courier New, Courier, monospace">flow_statistics</FONT>)<BR><BR>NetCDF 1178 1221 unit attribute in timeseries output in case of statistic regions 1179 added. (< font face="Courier New, Courier, monospace">netcdf</font>)<br><br>Maximum1222 added. (<FONT FACE="Courier New, Courier, monospace">netcdf</FONT>)<BR><BR>Maximum 1180 1223 number of tails is calculated from maximum number of particles and 1181 < font face="Courier New, Courier, monospace">skip_particles_for_tail</font>.1182 (< font face="Courier New, Courier, monospace">init_particles</font>)<br><br>Value1183 of < font face="Courier New, Courier, monospace">vertical_particle_advection</font>1184 is allowed to differ for each particle group. (< font face="Courier New, Courier, monospace">advec_particles</font>,1185 < font face="Courier New, Courier, monospace">header</font>,1186 < font face="Courier New, Courier, monospace">modules</font>)1187 < br><br>First constant in array <font face="Courier New, Courier, monospace">den</font>1188 also defined as type double. (< font face="Courier New, Courier, monospace">eqn_state_seawater</font>)<br><br>Parameter1189 < font face="Courier New, Courier, monospace">dvrp_psize</font>1190 moved from < font face="Courier New, Courier, monospace">particles_par</font>1191 to < font face="Courier New, Courier, monospace">dvrp_graphics_par</font>.1192 (< font face="Courier New, Courier, monospace">package_parin</font>)<br><br><font face="Courier New, Courier, monospace">topography_grid_convention</font>1193 moved from < font face="Courier New, Courier, monospace">userpar</font>1194 to < font face="Courier New, Courier, monospace">inipar</font>1195 (< font face="Courier New, Courier, monospace">check_parameters</font>,1196 < font face="Courier New, Courier, monospace">header</font>, <font face="Courier New, Courier, monospace">parin</font>,1197 < font face="Courier New, Courier, monospace">read_var_list</font>,1198 < font face="Courier New, Courier, monospace">user_check_parameters</font>,1199 < font face="Courier New, Courier, monospace">user_header</font>,1200 < font face="Courier New, Courier, monospace">user_init_grid</font>,1201 < font face="Courier New, Courier, monospace">user_parin</font>,1202 < font face="Courier New, Courier, monospace">write_var_list</font>)<br><br>Default1203 value of < font face="Courier New, Courier, monospace">grid_matching</font>1204 changed to '< i>strict</i>'. (<font face="Courier New, Courier, monospace">modules</font>)<br><br>Adjustments1224 <FONT FACE="Courier New, Courier, monospace">skip_particles_for_tail</FONT>. 1225 (<FONT FACE="Courier New, Courier, monospace">init_particles</FONT>)<BR><BR>Value 1226 of <FONT FACE="Courier New, Courier, monospace">vertical_particle_advection</FONT> 1227 is allowed to differ for each particle group. (<FONT FACE="Courier New, Courier, monospace">advec_particles</FONT>, 1228 <FONT FACE="Courier New, Courier, monospace">header</FONT>, 1229 <FONT FACE="Courier New, Courier, monospace">modules</FONT>) 1230 <BR><BR>First constant in array <FONT FACE="Courier New, Courier, monospace">den</FONT> 1231 also defined as type double. (<FONT FACE="Courier New, Courier, monospace">eqn_state_seawater</FONT>)<BR><BR>Parameter 1232 <FONT FACE="Courier New, Courier, monospace">dvrp_psize</FONT> 1233 moved from <FONT FACE="Courier New, Courier, monospace">particles_par</FONT> 1234 to <FONT FACE="Courier New, Courier, monospace">dvrp_graphics_par</FONT>. 1235 (<FONT FACE="Courier New, Courier, monospace">package_parin</FONT>)<BR><BR><FONT FACE="Courier New, Courier, monospace">topography_grid_convention</FONT> 1236 moved from <FONT FACE="Courier New, Courier, monospace">userpar</FONT> 1237 to <FONT FACE="Courier New, Courier, monospace">inipar</FONT> 1238 (<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>, 1239 <FONT FACE="Courier New, Courier, monospace">header</FONT>, <FONT FACE="Courier New, Courier, monospace">parin</FONT>, 1240 <FONT FACE="Courier New, Courier, monospace">read_var_list</FONT>, 1241 <FONT FACE="Courier New, Courier, monospace">user_check_parameters</FONT>, 1242 <FONT FACE="Courier New, Courier, monospace">user_header</FONT>, 1243 <FONT FACE="Courier New, Courier, monospace">user_init_grid</FONT>, 1244 <FONT FACE="Courier New, Courier, monospace">user_parin</FONT>, 1245 <FONT FACE="Courier New, Courier, monospace">write_var_list</FONT>)<BR><BR>Default 1246 value of <FONT FACE="Courier New, Courier, monospace">grid_matching</FONT> 1247 changed to '<I>strict</I>'. (<FONT FACE="Courier New, Courier, monospace">modules</FONT>)<BR><BR>Adjustments 1205 1248 for runs on lcxt4 (necessary due to a software update on CRAY) and 1206 for coupled runs on ibmy. (< font face="Courier New, Courier, monospace">mrun</font>,1207 < font face="Courier New, Courier, monospace">subjob</font>)</p>1208 </ td>1209 < td style="width: 393px; vertical-align: top;">1210 < p>advec_particles, advec_s_bc, buoyancy, calc_spectra,1249 for coupled runs on ibmy. (<FONT FACE="Courier New, Courier, monospace">mrun</FONT>, 1250 <FONT FACE="Courier New, Courier, monospace">subjob</FONT>)</P> 1251 </TD> 1252 <TD WIDTH=393> 1253 <P>advec_particles, advec_s_bc, buoyancy, calc_spectra, 1211 1254 check_for_restart, check_open, check_parameters, close_file, 1212 1255 coriolis, cpu_log, data_output_2d, data_output_3d, … … 1222 1265 user_init_plant_canopy, user_parin, user_read_restart_data, 1223 1266 user_spectra, write_var_list 1224 </ p>1225 </ td>1226 </ tr>1227 < tr>1228 < td style="width: 37px; vertical-align: top;">1229 < p><br>1230 </ p>1231 </ td>1232 < td style="width: 56px; vertical-align: top;">1233 < p><br>1234 </ p>1235 </ td>1236 < td style="width: 68px; vertical-align: top;">1237 < p><br>1238 </ p>1239 </ td>1240 < td style="width: 62px; vertical-align: top;">1241 < p><br>1242 </ p>1243 </ td>1244 < td style="width: 36px; vertical-align: top;">1245 < p>B</p>1246 </ td>1247 < td style="width: 518px; vertical-align: top;">1248 < p>Bugfix: Initial hydrostatic pressure profile in case of ocean1249 runs is now calculated in 5 iteration steps. (< font face="Courier New, Courier, monospace">init_ocean</font>)<br><br>Bugfix:1267 </P> 1268 </TD> 1269 </TR> 1270 <TR> 1271 <TD WIDTH=37> 1272 <P><BR> 1273 </P> 1274 </TD> 1275 <TD WIDTH=56> 1276 <P><BR> 1277 </P> 1278 </TD> 1279 <TD WIDTH=68> 1280 <P><BR> 1281 </P> 1282 </TD> 1283 <TD WIDTH=62> 1284 <P><BR> 1285 </P> 1286 </TD> 1287 <TD WIDTH=36> 1288 <P>B</P> 1289 </TD> 1290 <TD WIDTH=517> 1291 <P>Bugfix: Initial hydrostatic pressure profile in case of ocean 1292 runs is now calculated in 5 iteration steps. (<FONT FACE="Courier New, Courier, monospace">init_ocean</FONT>)<BR><BR>Bugfix: 1250 1293 wrong sign in buoyancy production of ocean part in case of not 1251 using the reference density (only in 3D routine < font face="Courier New, Courier, monospace">production_e</font>).1252 (< font face="Courier New, Courier, monospace">production_e</font>)<br><br>Bugfix:1294 using the reference density (only in 3D routine <FONT FACE="Courier New, Courier, monospace">production_e</FONT>). 1295 (<FONT FACE="Courier New, Courier, monospace">production_e</FONT>)<BR><BR>Bugfix: 1253 1296 output of averaged 2d/3d quantities requires that an avaraging 1254 1297 interval has been set, respective error message is included. 1255 (< font face="Courier New, Courier, monospace">check_parameters</font>)<br><br>Bugfix:1256 Output on unit 14 only if requested by < font face="Courier New, Courier, monospace">write_binary</font>.1257 (< font face="Courier New, Courier, monospace">user_last_actions</font>)<br><br>Bugfix1258 to avoid zero division by < font face="Courier New, Courier, monospace">km_neutral</font>.1259 (< font face="Courier New, Courier, monospace">production_e</font>)<br><br>Bugfix1298 (<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>)<BR><BR>Bugfix: 1299 Output on unit 14 only if requested by <FONT FACE="Courier New, Courier, monospace">write_binary</FONT>. 1300 (<FONT FACE="Courier New, Courier, monospace">user_last_actions</FONT>)<BR><BR>Bugfix 1301 to avoid zero division by <FONT FACE="Courier New, Courier, monospace">km_neutral</FONT>. 1302 (<FONT FACE="Courier New, Courier, monospace">production_e</FONT>)<BR><BR>Bugfix 1260 1303 for extended NetCDF files: In order to avoid 'data mode' errors if 1261 1304 updated attributes are larger than their original size, 1262 < font face="Courier New, Courier, monospace">NF90_PUT_ATT</font>1263 is called in 'define mode' enclosed by < font face="Courier New, Courier, monospace">NF90_REDEF</font>1264 and < font face="Courier New, Courier, monospace">NF90_ENDDEF</font>1305 <FONT FACE="Courier New, Courier, monospace">NF90_PUT_ATT</FONT> 1306 is called in 'define mode' enclosed by <FONT FACE="Courier New, Courier, monospace">NF90_REDEF</FONT> 1307 and <FONT FACE="Courier New, Courier, monospace">NF90_ENDDEF</FONT> 1265 1308 calls. This implies a possible performance loss; an alternative 1266 1309 strategy would be to ensure equal attribute size in a job chain. 1267 (< font face="Courier New, Courier, monospace">netcdf</font>)<br><br>Bugfix:1310 (<FONT FACE="Courier New, Courier, monospace">netcdf</FONT>)<BR><BR>Bugfix: 1268 1311 correction of initial volume flow for non-flat topography. 1269 (< font face="Courier New, Courier, monospace">init_3d_model</font>)<br><br>Bugfix:1270 zero initialization of arrays within buildings for '< i>cyclic_fill</i>'.1271 (< font face="Courier New, Courier, monospace">init_3d_model</font>)<br><br>Bugfix:1272 < font face="Courier New, Courier, monospace">to_be_resorted</font>1273 => < font face="Courier New, Courier, monospace">s_av</font> for1274 time-averaged scalars. (< font face="Courier New, Courier, monospace">data_output_2d</font>,1275 < font face="Courier New, Courier, monospace">data_output_3d</font>)<br><br>Bugfix:1276 avoid that < font face="Courier New, Courier, monospace">ngp_2dh_s_inner</font>1277 becomes zero. (< font face="Courier New, Courier, monospace">init_3_model</font>)<br><br>Typographical1278 error: unit of wpt in dots_unit. (< font face="Courier New, Courier, monospace">modules</font>)<br><br>Bugfix:1312 (<FONT FACE="Courier New, Courier, monospace">init_3d_model</FONT>)<BR><BR>Bugfix: 1313 zero initialization of arrays within buildings for '<I>cyclic_fill</I>'. 1314 (<FONT FACE="Courier New, Courier, monospace">init_3d_model</FONT>)<BR><BR>Bugfix: 1315 <FONT FACE="Courier New, Courier, monospace">to_be_resorted</FONT> 1316 => <FONT FACE="Courier New, Courier, monospace">s_av</FONT> for 1317 time-averaged scalars. (<FONT FACE="Courier New, Courier, monospace">data_output_2d</FONT>, 1318 <FONT FACE="Courier New, Courier, monospace">data_output_3d</FONT>)<BR><BR>Bugfix: 1319 avoid that <FONT FACE="Courier New, Courier, monospace">ngp_2dh_s_inner</FONT> 1320 becomes zero. (<FONT FACE="Courier New, Courier, monospace">init_3_model</FONT>)<BR><BR>Typographical 1321 error: unit of wpt in dots_unit. (<FONT FACE="Courier New, Courier, monospace">modules</FONT>)<BR><BR>Bugfix: 1279 1322 error in check, if particles moved further than one subdomain 1280 1323 length. This check must not be applied for newly released 1281 particles. (< font face="Courier New, Courier, monospace">advec_particles</font>)<br><br>Bugfix:1282 several tail counters are initialized, < font face="Courier New, Courier, monospace">particle_tail_coordinates</font>1324 particles. (<FONT FACE="Courier New, Courier, monospace">advec_particles</FONT>)<BR><BR>Bugfix: 1325 several tail counters are initialized, <FONT FACE="Courier New, Courier, monospace">particle_tail_coordinates</FONT> 1283 1326 is only written to file if its third index is > 0, arrays for 1284 1327 tails are allocated with a minimum size of 10 tails if there is no 1285 tail initially. (< font face="Courier New, Courier, monospace">advec_particles</font>,1286 < font face="Courier New, Courier, monospace">init_particles</font>)<br><br>Bugfix:1287 pressure included for profile output. (< font face="Courier New, Courier, monospace">check_parameters</font>)<br><br>Bugfix:1288 Type of < font face="Courier New, Courier, monospace">count</font>1289 and < font face="Courier New, Courier, monospace">count_rate</font>1290 changed to default < font face="Courier New, Courier, monospace">INTEGER</font>1291 on NEC machines. (< font face="Courier New, Courier, monospace">cpu_log</font>)<br><br>Bugfix:1328 tail initially. (<FONT FACE="Courier New, Courier, monospace">advec_particles</FONT>, 1329 <FONT FACE="Courier New, Courier, monospace">init_particles</FONT>)<BR><BR>Bugfix: 1330 pressure included for profile output. (<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>)<BR><BR>Bugfix: 1331 Type of <FONT FACE="Courier New, Courier, monospace">count</FONT> 1332 and <FONT FACE="Courier New, Courier, monospace">count_rate</FONT> 1333 changed to default <FONT FACE="Courier New, Courier, monospace">INTEGER</FONT> 1334 on NEC machines. (<FONT FACE="Courier New, Courier, monospace">cpu_log</FONT>)<BR><BR>Bugfix: 1292 1335 output of particle time series only if particle advection is 1293 switched on. (< font face="Courier New, Courier, monospace">time_integration</font>)<br><br>Bugfix:1294 qsws was calculated in case of < font face="Courier New, Courier, monospace">constant1295 heatflux</ font> = <font face="Courier New, Courier, monospace">.FALSE.</font>.1296 (< font face="Courier New, Courier, monospace">prandtl_fluxes</font>)<br><br>Bugfix:1336 switched on. (<FONT FACE="Courier New, Courier, monospace">time_integration</FONT>)<BR><BR>Bugfix: 1337 qsws was calculated in case of <FONT FACE="Courier New, Courier, monospace">constant 1338 heatflux</FONT> = <FONT FACE="Courier New, Courier, monospace">.FALSE.</FONT>. 1339 (<FONT FACE="Courier New, Courier, monospace">prandtl_fluxes</FONT>)<BR><BR>Bugfix: 1297 1340 averaging along z is not allowed for 2d quantities (e.g. u* and 1298 z0). (< font face="Courier New, Courier, monospace">data_output_2d</font>)<br><br>Typographical1299 errors. (< font face="Courier New, Courier, monospace">netcdf</font>)<br><br>If1341 z0). (<FONT FACE="Courier New, Courier, monospace">data_output_2d</FONT>)<BR><BR>Typographical 1342 errors. (<FONT FACE="Courier New, Courier, monospace">netcdf</FONT>)<BR><BR>If 1300 1343 the inversion height calculated by the prerun is zero, 1301 1344 inflow_damping_height must be explicitly specified. 1302 (< font face="Courier New, Courier, monospace">init_3d_model</font>)<br><br>Small1303 bugfix concerning 3d 64bit netcdf output format. (< font face="Courier New, Courier, monospace">header</font>)<br><br>Bugfix:1304 < font face="Courier New, Courier, monospace">dt_fixed</font>1345 (<FONT FACE="Courier New, Courier, monospace">init_3d_model</FONT>)<BR><BR>Small 1346 bugfix concerning 3d 64bit netcdf output format. (<FONT FACE="Courier New, Courier, monospace">header</FONT>)<BR><BR>Bugfix: 1347 <FONT FACE="Courier New, Courier, monospace">dt_fixed</FONT> 1305 1348 removed from the restart file, because otherwise, no change from a 1306 1349 fixed to a variable timestep would be possible in restart runs. 1307 (< font face="Courier New, Courier, monospace">read_var_list</font>,1308 < font face="Courier New, Courier, monospace">write_var_list</font>)<br><br>Bugfix:1309 initial setting of < font face="Courier New, Courier, monospace">time_coupling</font>1310 in coupled restart runs. (< font face="Courier New, Courier, monospace">time_integration</font>)</p>1311 </ td>1312 < td style="width: 393px; vertical-align: top;">1313 < p>advec_particles, check_parameters, cpu_log, data_output_2d,1350 (<FONT FACE="Courier New, Courier, monospace">read_var_list</FONT>, 1351 <FONT FACE="Courier New, Courier, monospace">write_var_list</FONT>)<BR><BR>Bugfix: 1352 initial setting of <FONT FACE="Courier New, Courier, monospace">time_coupling</FONT> 1353 in coupled restart runs. (<FONT FACE="Courier New, Courier, monospace">time_integration</FONT>)</P> 1354 </TD> 1355 <TD WIDTH=393> 1356 <P>advec_particles, check_parameters, cpu_log, data_output_2d, 1314 1357 data_output_3d, header, init_3d_model, init_particles, init_ocean, 1315 1358 modules, netcdf, prandtl_fluxes, production_e, read_var_list, 1316 time_integration, user_last_actions, write_var_list</ p>1317 </ td>1318 </ tr>1319 < tr>1320 < td style="width: 37px; vertical-align: top;">1321 < p>02/02/09</p>1322 </ td>1323 < td style="width: 56px; vertical-align: top;">1324 < p>SR</p>1325 </ td>1326 < td style="width: 68px; vertical-align: top;">1327 < p>228</p>1328 </ td>1329 < td style="width: 62px; vertical-align: top;">1330 < p>3.6</p>1331 </ td>1332 < td style="width: 36px; vertical-align: top;">1333 < p>N</p>1334 </ td>1335 < td style="width: 518px; vertical-align: top;">1336 < p>This release contains further additions, changes, and bugfixes1359 time_integration, user_last_actions, write_var_list</P> 1360 </TD> 1361 </TR> 1362 <TR> 1363 <TD WIDTH=37> 1364 <P>02/02/09</P> 1365 </TD> 1366 <TD WIDTH=56> 1367 <P>SR</P> 1368 </TD> 1369 <TD WIDTH=68> 1370 <P>228</P> 1371 </TD> 1372 <TD WIDTH=62> 1373 <P>3.6</P> 1374 </TD> 1375 <TD WIDTH=36> 1376 <P>N</P> 1377 </TD> 1378 <TD WIDTH=517> 1379 <P>This release contains further additions, changes, and bugfixes 1337 1380 for the SGI-ICE system, as well as important changes like the 1338 1381 splitting of the user-interface into single files, a complete … … 1343 1386 different domain/subdomain sizes. A new handling of all kind of 1344 1387 output messages is introduced with this release and will be 1345 applied to all existing messages within the next releases.< br><br><b>New1346 features are:</ b><br><br>Restart runs on SGI-ICE are working.1347 (mrun)< br>2d-decomposition is default on SGI-ICE systems.1348 (init_pegrid)< br><br>Ocean-atmosphere coupling realized with1388 applied to all existing messages within the next releases.<BR><BR><B>New 1389 features are:</B><BR><BR>Restart runs on SGI-ICE are working. 1390 (mrun)<BR>2d-decomposition is default on SGI-ICE systems. 1391 (init_pegrid)<BR><BR>Ocean-atmosphere coupling realized with 1349 1392 MPI-1. mrun adjusted for this case (-Y option). Check that PALM is 1350 called with < font face="Courier New, Courier, monospace">mrun</font>-option1351 "<i>-K parallel</i>" for coupling. Adjustments in <font face="Courier New, Courier, monospace">mrun</font>,1352 < font face="Courier New, Courier, monospace">mbuild</font>, and1353 < font face="Courier New, Courier, monospace">subjob</font> for1354 lcxt4.< br><br>DVRP arguments changed to single precision, mode1355 pathlines added.< br><br>User can add additional routines in files1356 < font face="Courier New, Courier, monospace">user_additional_routines</font>.<br><br>User1393 called with <FONT FACE="Courier New, Courier, monospace">mrun</FONT>-option 1394 "<I>-K parallel</I>" for coupling. Adjustments in <FONT FACE="Courier New, Courier, monospace">mrun</FONT>, 1395 <FONT FACE="Courier New, Courier, monospace">mbuild</FONT>, and 1396 <FONT FACE="Courier New, Courier, monospace">subjob</FONT> for 1397 lcxt4.<BR><BR>DVRP arguments changed to single precision, mode 1398 pathlines added.<BR><BR>User can add additional routines in files 1399 <FONT FACE="Courier New, Courier, monospace">user_additional_routines</FONT>.<BR><BR>User 1357 1400 can check user parameters and deduce further quantities in 1358 < font face="Courier New, Courier, monospace">user_check_parameters</font></p>1359 </ td>1360 < td style="width: 393px; vertical-align: top;">1361 < p>check_for_restart, check_parameters, data_output_dvrp,1401 <FONT FACE="Courier New, Courier, monospace">user_check_parameters</FONT></P> 1402 </TD> 1403 <TD WIDTH=393> 1404 <P>check_for_restart, check_parameters, data_output_dvrp, 1362 1405 init_dvrp, init_pegrid, local_stop, modules, package_parin, palm, 1363 surface_coupler, timestep< br><br>Makefile, mbuild, mrun,1364 subjob< br><br><b>new:</b><br>init_coupling,1365 user_additional_routines, user_check_parameters</ p>1366 </ td>1367 </ tr>1368 < tr>1369 < td style="width: 37px; vertical-align: top;">1370 < p><br>1371 </ p>1372 </ td>1373 < td style="width: 56px; vertical-align: top;">1374 < p><br>1375 </ p>1376 </ td>1377 < td style="width: 68px; vertical-align: top;">1378 < p><br>1379 </ p>1380 </ td>1381 < td style="width: 62px; vertical-align: top;">1382 < p><br>1383 </ p>1384 </ td>1385 < td style="width: 36px; vertical-align: top;">1386 < p>C</p>1387 </ td>1388 < td style="width: 518px; vertical-align: top;">1389 < p>User interface has been split into single files.<br><br>Type of1390 variables < font face="Courier New, Courier, monospace">count</font>1391 and < font face="Courier New, Courier, monospace">count_rate</font>1392 changed to INTEGER(8) in order to avoid "out of range"1406 surface_coupler, timestep<BR><BR>Makefile, mbuild, mrun, 1407 subjob<BR><BR><B>new:</B><BR>init_coupling, 1408 user_additional_routines, user_check_parameters</P> 1409 </TD> 1410 </TR> 1411 <TR> 1412 <TD WIDTH=37> 1413 <P><BR> 1414 </P> 1415 </TD> 1416 <TD WIDTH=56> 1417 <P><BR> 1418 </P> 1419 </TD> 1420 <TD WIDTH=68> 1421 <P><BR> 1422 </P> 1423 </TD> 1424 <TD WIDTH=62> 1425 <P><BR> 1426 </P> 1427 </TD> 1428 <TD WIDTH=36> 1429 <P>C</P> 1430 </TD> 1431 <TD WIDTH=517> 1432 <P>User interface has been split into single files.<BR><BR>Type of 1433 variables <FONT FACE="Courier New, Courier, monospace">count</FONT> 1434 and <FONT FACE="Courier New, Courier, monospace">count_rate</FONT> 1435 changed to INTEGER(8) in order to avoid "out of range" 1393 1436 problems, which result in measured negative time intervals. 1394 (cpu_log, local_tremain, local_tremain_ini)< br><br>Reading1437 (cpu_log, local_tremain, local_tremain_ini)<BR><BR>Reading 1395 1438 mechanism from restart files completely revised. The 1396 1439 subdomain/total domain size is now allowed to vary arbitrarily 1397 1440 between the current and previous run. (read_var_list, 1398 read_3d_binary, user_read_restart_data)< br><br>Precompilation1399 mechanism (< font face="Courier New, Courier, monospace">mbuild</font>)1441 read_3d_binary, user_read_restart_data)<BR><BR>Precompilation 1442 mechanism (<FONT FACE="Courier New, Courier, monospace">mbuild</FONT>) 1400 1443 completely revised: the source-tarfile remains in the source 1401 directory (< font face="Courier New, Courier, monospace">trunk/SOURCE</font>).1444 directory (<FONT FACE="Courier New, Courier, monospace">trunk/SOURCE</FONT>). 1402 1445 One depository per block (given in the config-file) is created. 1403 1446 Always all files from the source directory are copied to the 1404 1447 respective depository. No additional file checks are done any more 1405 1448 (mrun version 2.1). The depository name used contains the 1406 conditions given by < font face="Courier New, Courier, monospace">mrun</font>-option1407 "<font face="Courier New, Courier, monospace">-K</font>".1408 (mbuild, mrun)< br><br>Output messages (including required stop of1409 execution) can now be handled with the new subroutine < font face="Courier New, Courier, monospace">message</font>.1449 conditions given by <FONT FACE="Courier New, Courier, monospace">mrun</FONT>-option 1450 "<FONT FACE="Courier New, Courier, monospace">-K</FONT>". 1451 (mbuild, mrun)<BR><BR>Output messages (including required stop of 1452 execution) can now be handled with the new subroutine <FONT FACE="Courier New, Courier, monospace">message</FONT>. 1410 1453 All output messages will be replaced by this routine step by step 1411 within the next revisions.< br><br>Neumann boundary condition at1412 < font face="Courier New, Courier, monospace">k=nzb</font> is1454 within the next revisions.<BR><BR>Neumann boundary condition at 1455 <FONT FACE="Courier New, Courier, monospace">k=nzb</FONT> is 1413 1456 explicitly set for better reading, although this has been already 1414 done in boundary_conds. (advec_s_bc)< br><br>Origin of the1457 done in boundary_conds. (advec_s_bc)<BR><BR>Origin of the 1415 1458 xy-coordinate system shifted from the center of the first grid 1416 cell (indices < font face="Courier New, Courier, monospace">i=0</font>,1417 < font face="Courier New, Courier, monospace">j=0</font>) to the1459 cell (indices <FONT FACE="Courier New, Courier, monospace">i=0</FONT>, 1460 <FONT FACE="Courier New, Courier, monospace">j=0</FONT>) to the 1418 1461 south-left corner of this cell. (netcdf) Topography definition 1419 according to new user parameter < font face="Courier New, Courier, monospace">topography_grid_convention</font>.1420 (init_grid, modules, user_header, user_init_grid, user_parin)</ p>1421 </ td>1422 < td style="width: 393px; vertical-align: top;">1423 < p>advec_s_bc, check_parameters, cpu_log, init_grid, local_stop,1462 according to new user parameter <FONT FACE="Courier New, Courier, monospace">topography_grid_convention</FONT>. 1463 (init_grid, modules, user_header, user_init_grid, user_parin)</P> 1464 </TD> 1465 <TD WIDTH=393> 1466 <P>advec_s_bc, check_parameters, cpu_log, init_grid, local_stop, 1424 1467 local_tremain, local_tremain_ini, modules, netcdf, read_3d_binary, 1425 read_var_list, user_read_restart_data< br><br>Makefile, mbuild,1426 mrun< br><br><b>removed:</b><br>user_interface<br><br><b>new:</b><br>message,1468 read_var_list, user_read_restart_data<BR><BR>Makefile, mbuild, 1469 mrun<BR><BR><B>removed:</B><BR>user_interface<BR><BR><B>new:</B><BR>message, 1427 1470 user_3d_data_averaging, user_actions, user_advec_particles, 1428 1471 user_check_data_output, user_check_data_output_pr, … … 1432 1475 user_init_particles, user_init_plant_canopy, user_last_actions, 1433 1476 user_parin, user_parin, user_particle_attributes, 1434 user_read_restart_data, user_spectra, user_statistics</ p>1435 </ td>1436 </ tr>1437 < tr>1438 < td style="width: 37px; vertical-align: top;">1439 < p><br>1440 </ p>1441 </ td>1442 < td style="width: 56px; vertical-align: top;">1443 < p><br>1444 </ p>1445 </ td>1446 < td style="width: 68px; vertical-align: top;">1447 < p><br>1448 </ p>1449 </ td>1450 < td style="width: 62px; vertical-align: top;">1451 < p><br>1452 </ p>1453 </ td>1454 < td style="width: 36px; vertical-align: top;">1455 < p>B</p>1456 </ td>1457 < td style="width: 518px; vertical-align: top;">1458 < p>Bugfix: array <font face="Courier New, Courier, monospace">d</font>1477 user_read_restart_data, user_spectra, user_statistics</P> 1478 </TD> 1479 </TR> 1480 <TR> 1481 <TD WIDTH=37> 1482 <P><BR> 1483 </P> 1484 </TD> 1485 <TD WIDTH=56> 1486 <P><BR> 1487 </P> 1488 </TD> 1489 <TD WIDTH=68> 1490 <P><BR> 1491 </P> 1492 </TD> 1493 <TD WIDTH=62> 1494 <P><BR> 1495 </P> 1496 </TD> 1497 <TD WIDTH=36> 1498 <P>B</P> 1499 </TD> 1500 <TD WIDTH=517> 1501 <P>Bugfix: array <FONT FACE="Courier New, Courier, monospace">d</FONT> 1459 1502 is reallocated in case that multigrid is used. 1460 (calc_spectra)< br><br>Bugfixes for nonparallel execution.1503 (calc_spectra)<BR><BR>Bugfixes for nonparallel execution. 1461 1504 (check_for_restart, cpu_statistics, 1462 inflow_turbulence, timestep)< br><br>Size of <font face="Courier New, Courier, monospace">pf3d1463 </ font>adjusted to the required output size (1 gridpoint less,1505 inflow_turbulence, timestep)<BR><BR>Size of <FONT FACE="Courier New, Courier, monospace">pf3d 1506 </FONT>adjusted to the required output size (1 gridpoint less, 1464 1507 along all three dimensions), because output of a subset of the 1465 data (< font face="Courier New, Courier, monospace">pf3d(nxa:nxe...)</font>)1508 data (<FONT FACE="Courier New, Courier, monospace">pf3d(nxa:nxe...)</FONT>) 1466 1509 in the NF90_PUT_VAR statement caused segmentation fault with the 1467 INTEL compiler. (combine_plot_fields)< br><br>Bugfix: error in <font face="Courier New, Courier, monospace">zu</font>1468 index in case of < font face="Courier New, Courier, monospace">section_xy=-1</font>.1469 (header)< br><br>Inconsistency removed: as the thermal1510 INTEL compiler. (combine_plot_fields)<BR><BR>Bugfix: error in <FONT FACE="Courier New, Courier, monospace">zu</FONT> 1511 index in case of <FONT FACE="Courier New, Courier, monospace">section_xy=-1</FONT>. 1512 (header)<BR><BR>Inconsistency removed: as the thermal 1470 1513 stratification is not taken into account for the evaluation of the 1471 wall fluxes at vertical walls, the eddy viscosity < font face="Courier New, Courier, monospace">km</font>1514 wall fluxes at vertical walls, the eddy viscosity <FONT FACE="Courier New, Courier, monospace">km</FONT> 1472 1515 must not be used for the evaluation of the velocity gradients 1473 < font face="Courier New, Courier, monospace">dudy</font>, <font face="Courier New, Courier, monospace">dwdy</font>,1474 < font face="Courier New, Courier, monospace">dvdx</font> and <font face="Courier New, Courier, monospace">dwdx</font>.1475 (production_e)< br><br>Bugfix in calculating <font face="Courier New, Courier, monospace">k</font>1476 index in case of oceans runs. (sort_particles)< br><br>Bugfix: no1516 <FONT FACE="Courier New, Courier, monospace">dudy</FONT>, <FONT FACE="Courier New, Courier, monospace">dwdy</FONT>, 1517 <FONT FACE="Courier New, Courier, monospace">dvdx</FONT> and <FONT FACE="Courier New, Courier, monospace">dwdx</FONT>. 1518 (production_e)<BR><BR>Bugfix in calculating <FONT FACE="Courier New, Courier, monospace">k</FONT> 1519 index in case of oceans runs. (sort_particles)<BR><BR>Bugfix: no 1477 1520 output of particle concentration and radius unless particles have 1478 been started. (data_output_2d)< br><br>Bugfix: reading of1479 < font face="Courier New, Courier, monospace">spectrum_x|y</font>1521 been started. (data_output_2d)<BR><BR>Bugfix: reading of 1522 <FONT FACE="Courier New, Courier, monospace">spectrum_x|y</FONT> 1480 1523 from restart files ignored if total numbers of grid points do not 1481 match. (read_3d_binary)< br><br>Bugfix: abort in case that absolute1482 temperature is below zero. (init_cloud_physics)</ p>1483 </ td>1484 < td style="width: 393px; vertical-align: top;">1485 < p>advec_particles, calc_spectra, check_for_restart,1524 match. (read_3d_binary)<BR><BR>Bugfix: abort in case that absolute 1525 temperature is below zero. (init_cloud_physics)</P> 1526 </TD> 1527 <TD WIDTH=393> 1528 <P>advec_particles, calc_spectra, check_for_restart, 1486 1529 cpu_statistics, data_output_2d, header, inflow_turbulence, 1487 1530 init_cloud_physics, production_e, read_3d_binary, 1488 timestep< br><br>combine_plot_fields</p>1489 </ td>1490 </ tr>1491 </ tbody></table>1492 < p><br> <br> 1493 </ p>1494 < h2><a name="Kapitel2.0"></a>2.0 How to change the source code1495 and how to document modifications</ h2>1496 < p>Currently (Sep 23rd, 2009), only selected users are allowed to1531 timestep<BR><BR>combine_plot_fields</P> 1532 </TD> 1533 </TR> 1534 </TABLE> 1535 <P><BR> <BR> 1536 </P> 1537 <H2><A NAME="Kapitel2.0"></A>2.0 How to change the source code 1538 and how to document modifications</H2> 1539 <P>Currently (Sep 23rd, 2009), only selected users are allowed to 1497 1540 commit changes to the repository. Rules given below are preliminary, 1498 until we have switched to the "trac"-System.</p>1499 < ol>1500 < li><p>Change source code in your current working copy. Document1501 changes in the respective file headers unter "<font face="Courier New, Courier, monospace">Current1502 revisions:</ font>". Additionally, document all changes in a1541 until we have switched to the "trac"-System.</P> 1542 <OL> 1543 <LI><P>Change source code in your current working copy. Document 1544 changes in the respective file headers unter "<FONT FACE="Courier New, Courier, monospace">Current 1545 revisions:</FONT>". Additionally, document all changes in a 1503 1546 local file (e.g. ~/palm/current_version/CURRENT_MODIFICATIONS), 1504 1547 including the files that have been changed. Classify changes in 1505 three cases, new (N), changed (C), and bugfix (B). < b>Try to be as1506 short and as precise as possible in describing the changes!</ b></p>1507 < /li><li><p>Test the changed version, unless it works sufficiently.</p>1508 < /li><li><p>Commit the changes to the repository<br><br> <font face="Courier New, Courier, monospace">svn1509 commit -m "message string" trunk<br></font><br>where1510 "<font face="Courier New, Courier, monospace">message string</font>"1511 is a short, < b>meaningful</b> summary of the1512 changes.< br><br>Alternatively, in case that you have made quite a1548 three cases, new (N), changed (C), and bugfix (B). <B>Try to be as 1549 short and as precise as possible in describing the changes!</B></P> 1550 <LI><P>Test the changed version, unless it works sufficiently.</P> 1551 <LI><P>Commit the changes to the repository<BR><BR> <FONT FACE="Courier New, Courier, monospace">svn 1552 commit -m "message string" trunk<BR></FONT><BR>where 1553 "<FONT FACE="Courier New, Courier, monospace">message string</FONT>" 1554 is a short, <B>meaningful</B> summary of the 1555 changes.<BR><BR>Alternatively, in case that you have made quite a 1513 1556 lot of changes, you can also give the contents of your file 1514 CURRENT_MODIFICATIONS as the log message:<br><br> <font face="Courier New, Courier, monospace">svn 1515 commit -F CURRENT_MODIFICATIONS trunk</font></p> 1516 </li><li><p>Enter the changes into the technical documentation (under 1517 <font face="Courier New, Courier, monospace">.../trunk/DOC/tec/technical_documentation.html</font>).</p> 1518 </li><li><p>Move the change comments in the file headers from "Current 1519 revisions:" to "Former revisions:". Set the current 1520 svn id in front of that.<br><br><b>Example:</b><br><br><b>before 1521 move:</b><br><br><font face="Courier New, Courier, monospace">! 1522 Current revisions:</font><br><font face="Courier New, Courier, monospace">! 1523 -----------------</font><br><font face="Courier New, Courier, monospace">! 1524 </font><font face="Courier New, Courier, monospace"><b>new dummy 1525 argument abcd</b></font><br><font face="Courier New, Courier, monospace">!</font><br><font face="Courier New, Courier, monospace">! 1526 Former revisions:</font><br><font face="Courier New, Courier, monospace">! 1527 -----------------</font><br><font face="Courier New, Courier, monospace">! §Id: init_3d_model.f90 </font><font color="#3366ff"><font face="Courier New, Courier, monospace"><b>425 1528 2010-02-06 13:37:48Z raasch</b></font></font><font face="Courier New, Courier, monospace"> §</font><br><font face="Courier New, Courier, monospace">!</font><br><font face="Courier New, Courier, monospace">! 1529 407 2009-12-01 15:01:15Z maronga</font><br><font face="Courier New, Courier, monospace">! 1530 var_ts is replaced by dots_max </font><br><br><b>after move:</b><br><br><font face="Courier New, Courier, monospace">! 1531 Current revisions:</font><br><font face="Courier New, Courier, monospace">! 1532 -----------------</font><br><font face="Courier New, Courier, monospace">! 1533 </font><br><font face="Courier New, Courier, monospace">!</font><br><font face="Courier New, Courier, monospace">! 1534 Former revisions:</font><br><font face="Courier New, Courier, monospace">! 1535 -----------------</font><br><font face="Courier New, Courier, monospace">! §Id: init_3d_model.f90 425 2010-02-06 13:37:48Z raasch</font> <font face="Courier New, Courier, monospace">§<br>!</font><br><font face="Courier New, Courier, monospace">! 1536 </font><font color="#3366ff"><font face="Courier New, Courier, monospace"><b>425 1537 2010-02-06 13:37:48Z raasch</b></font></font><font face="Courier New, Courier, monospace"><br>! 1538 </font><font face="Courier New, Courier, monospace"><b>new dummy 1539 argument abcd</b></font><br><font face="Courier New, Courier, monospace">!</font><br><font face="Courier New, Courier, monospace">! 1540 407 2009-12-01 15:01:15Z maronga</font><br><font face="Courier New, Courier, monospace">! 1541 var_ts is replaced by dots_max<br><br></font><font face="Times New Roman, Times, serif">Note 1542 that the "</font><span style="font-family: Courier New,Courier,monospace;">§</span><font face="Times New Roman, Times, serif">" 1543 in this example should read "$", but "$" cannot 1557 CURRENT_MODIFICATIONS as the log message:<BR><BR> <FONT FACE="Courier New, Courier, monospace">svn 1558 commit -F CURRENT_MODIFICATIONS trunk</FONT></P> 1559 <LI><P>Enter the changes into the technical documentation (under 1560 <FONT FACE="Courier New, Courier, monospace">.../trunk/DOC/tec/technical_documentation.html</FONT>).</P> 1561 <LI><P>Move the change comments in the file headers from "Current 1562 revisions:" to "Former revisions:". Set the current 1563 svn id in front of that.<BR><BR><B>Example:</B><BR><BR><B>before 1564 move:</B><BR><BR><FONT FACE="Courier New, Courier, monospace">! 1565 Current revisions:</FONT><BR><FONT FACE="Courier New, Courier, monospace">! 1566 -----------------</FONT><BR><FONT FACE="Courier New, Courier, monospace">! 1567 </FONT><FONT FACE="Courier New, Courier, monospace"><B>new dummy 1568 argument abcd</B></FONT><BR><FONT FACE="Courier New, Courier, monospace">!</FONT><BR><FONT FACE="Courier New, Courier, monospace">! 1569 Former revisions:</FONT><BR><FONT FACE="Courier New, Courier, monospace">! 1570 -----------------</FONT><BR><FONT FACE="Courier New, Courier, monospace">! 1571 §Id: init_3d_model.f90 </FONT><FONT COLOR="#3366ff"><FONT FACE="Courier New, Courier, monospace"><B>425 1572 2010-02-06 13:37:48Z raasch</B></FONT></FONT> <FONT FACE="Courier New, Courier, monospace">§</FONT><BR><FONT FACE="Courier New, Courier, monospace">!</FONT><BR><FONT FACE="Courier New, Courier, monospace">! 1573 407 2009-12-01 15:01:15Z maronga</FONT><BR><FONT FACE="Courier New, Courier, monospace">! 1574 var_ts is replaced by dots_max </FONT><BR><BR><B>after move:</B><BR><BR><FONT FACE="Courier New, Courier, monospace">! 1575 Current revisions:</FONT><BR><FONT FACE="Courier New, Courier, monospace">! 1576 -----------------</FONT><BR><FONT FACE="Courier New, Courier, monospace">! 1577 </FONT><BR><FONT FACE="Courier New, Courier, monospace">!</FONT><BR><FONT FACE="Courier New, Courier, monospace">! 1578 Former revisions:</FONT><BR><FONT FACE="Courier New, Courier, monospace">! 1579 -----------------</FONT><BR><FONT FACE="Courier New, Courier, monospace">! 1580 §Id: init_3d_model.f90 425 2010-02-06 13:37:48Z raasch</FONT> <FONT FACE="Courier New, Courier, monospace">§<BR>!</FONT><BR><FONT FACE="Courier New, Courier, monospace">! 1581 </FONT><FONT COLOR="#3366ff"><FONT FACE="Courier New, Courier, monospace"><B>425 1582 2010-02-06 13:37:48Z raasch</B></FONT></FONT><FONT FACE="Courier New, Courier, monospace"><BR>! 1583 </FONT><FONT FACE="Courier New, Courier, monospace"><B>new dummy 1584 argument abcd</B></FONT><BR><FONT FACE="Courier New, Courier, monospace">!</FONT><BR><FONT FACE="Courier New, Courier, monospace">! 1585 407 2009-12-01 15:01:15Z maronga</FONT><BR><FONT FACE="Courier New, Courier, monospace">! 1586 var_ts is replaced by dots_max<BR><BR></FONT><FONT FACE="Times New Roman, Times, serif">Note 1587 that the "</FONT><FONT FACE="Courier New, Courier, monospace">§</FONT><FONT FACE="Times New Roman, Times, serif">" 1588 in this example should read "$", but "$" cannot 1544 1589 be used here, because otherwise svn would replace these entries 1545 after every change to this technical documentation.</ font></p>1546 < /li><li><p>Commit the changes in the technical documentation and the1547 file headers:< br><br> <font face="Courier New, Courier, monospace">svn1548 commit -m "last commit documented" trunk</font><br><br><br>1549 </ p>1550 </ li></ol>1551 < h2><a name="Kapitel3.0"></a>3.0 Description of selected parts1552 of the model source code</ h2>1553 < p>This section gives links to existing descriptions about special1590 after every change to this technical documentation.</FONT></P> 1591 <LI><P>Commit the changes in the technical documentation and the 1592 file headers:<BR><BR> <FONT FACE="Courier New, Courier, monospace">svn 1593 commit -m "last commit documented" trunk</FONT><BR><BR><BR> 1594 </P> 1595 </OL> 1596 <H2><A NAME="Kapitel3.0"></A>3.0 Description of selected parts 1597 of the model source code</H2> 1598 <P>This section gives links to existing descriptions about special 1554 1599 parts of the PALM code, e.g. special numerical methods that are used 1555 1600 (including mathematical background). Documents are stored in single 1556 1601 files with different formats. Some are in German (sorry for the 1557 inconvenience). < br> 1558 </ p>1559 < ul>1560 < li><p style="margin-bottom: 0in;"><a name="UPS"></a>upstream-spline1561 advection scheme ( < a href="methods/upstream_spline/ups.pdf">.pdf</a>1602 inconvenience). <BR> 1603 </P> 1604 <UL> 1605 <LI><P STYLE="margin-bottom: 0in"><A NAME="UPS"></A>upstream-spline 1606 advection scheme ( <A HREF="methods/upstream_spline/ups.pdf">.pdf</A> 1562 1607 , only in German) 1563 </ p>1564 < /li><li><p style="margin-bottom: 0in;"><a name="Cloud_physics"></a>cloud1565 physics module ( < a href="methods/cloud_physics/cloud_physics.pdf">.pdf</a>1608 </P> 1609 <LI><P STYLE="margin-bottom: 0in"><A NAME="Cloud_physics"></A>cloud 1610 physics module ( <A HREF="methods/cloud_physics/cloud_physics.pdf">.pdf</A> 1566 1611 ) 1567 </ p>1568 < /li><li><p style="margin-bottom: 0in;"><a name="Bitkompression"></a>data1569 compression with < a href="methods/bit_compression/bit_compression.html">bit1570 shifting method</ a> (only in German)</p>1571 < /li><li><p>Runge-Kutta time integration scheme ( <a href="methods/runge_kutta/runge_kutta.pdf">.pdf</a>1612 </P> 1613 <LI><P STYLE="margin-bottom: 0in"><A NAME="Bitkompression"></A>data 1614 compression with <A HREF="methods/bit_compression/bit_compression.html">bit 1615 shifting method</A> (only in German)</P> 1616 <LI><P>Runge-Kutta time integration scheme ( <A HREF="methods/runge_kutta/runge_kutta.pdf">.pdf</A> 1572 1617 , only in German) 1573 </p> 1574 </li></ul> 1575 <p><br> <br> <br> <br> <br> <br> 1576 <br> <br> 1577 </p> 1578 </body></html> 1618 </P> 1619 </UL> 1620 <P><BR> <BR> <BR> <BR> <BR> <BR> 1621 <BR> <BR> 1622 </P> 1623 </BODY> 1624 </HTML>
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