- Timestamp:
- Jan 12, 2009 3:32:23 PM (15 years ago)
- Location:
- palm/trunk
- Files:
-
- 5 edited
-
SCRIPTS/mbuild (modified) (3 diffs)
-
SCRIPTS/mrun (modified) (7 diffs)
-
SCRIPTS/subjob (modified) (1 diff)
-
SOURCE/CURRENT_MODIFICATIONS (modified) (2 diffs)
-
SOURCE/init_cloud_physics.f90 (modified) (2 diffs)
Legend:
- Unmodified
- Added
- Removed
-
palm/trunk/SCRIPTS/mbuild
r215 r221 798 798 799 799 800 # MPI LIBRARY ERMITTELN 801 line="" 802 found=false 803 grep "$remote_host_string" $config_file | grep "%mpilib" > $tmp_mbuild 804 while read line1 805 do 806 807 if [[ $(echo $line1 | cut -d" " -s -f3-) = "$remote_host_string" ]] 808 then 809 line="$line1" 810 fi 811 812 if [[ "$line" != "" && $(echo $line | cut -c1) != "#" ]] 813 then 814 # EVENTUELLE DOPPELPUNKTE AUS DIREKTIVENSTRING ENTFERNEN 815 mpilib=`echo $line | cut -d" " -s -f2` 816 found=true 817 fi 818 819 done < $tmp_mbuild 820 821 [[ $found = false ]] && mpilib=mpt 822 823 824 825 800 826 # LADER-OPTIONEN ERMITTELN 801 827 line="" … … 887 913 line=$(echo "$line" | cut -c51-) 888 914 done 915 if [[ $( echo $remote_host | cut -c1-5 ) = lcsgi ]] 916 then 917 column1="mpi library:"; column2=$mpilib 918 printf "| $column1$column2 | \n" 919 fi 889 920 column1="loader options:"; column2=$loader_options 890 921 printf "| $column1$column2 | \n" … … 1082 1113 then 1083 1114 1084 print ". /usr/share/modules/init/bash; module load mpt/1.21; cd ${remote_md}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" | ssh ${remote_username}@${remote_addres} 2>&1 | tee ${remote_host}_last_make_protokoll1115 print ". /usr/share/modules/init/bash; module load $mpilib; cd ${remote_md}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" | ssh ${remote_username}@${remote_addres} 2>&1 | tee ${remote_host}_last_make_protokoll 1085 1116 # print ". /usr/share/modules/init/bash; module load mvapich2/1.2rc1-intel; cd ${remote_md}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" | ssh ${remote_username}@${remote_addres} 2>&1 | tee ${remote_host}_last_make_protokoll 1086 1117 # print ". /usr/share/modules/init/bash; module load mvapich2; cd ${remote_md}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" | ssh ${remote_username}@${remote_addres} 2>&1 | tee ${remote_host}_last_make_protokoll -
palm/trunk/SCRIPTS/mrun
r220 r221 164 164 # default source-code filenames are allowed 165 165 # 14/11/08 - Siggi - cond1 and cond2 are part of the depository name 166 # 08/01/09 - Siggi - mpi module on sgi machines to be used can be set 167 # with environment variable mpilib 166 168 167 169 … … 2015 2017 fi 2016 2018 2019 2020 # SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX 2021 if [[ $host = lcsgib || $host = lcsgih ]] 2022 then 2023 [[ "$mpilib" = "" ]] && export mpilib=mpt 2024 fi 2025 2026 2027 2017 2028 ########################################################################### 2018 2029 # HEADER-AUSGABE … … 2369 2380 elif [[ $localhost = lcsgib ]] 2370 2381 then 2371 printf " compiler is called via ssh on \"bicegate\" \n"2372 ssh 130.73.232.102 -l $usern ". /usr/share/modules/init/bash; module load mpt; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "2382 printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n" 2383 ssh 130.73.232.102 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" " 2373 2384 [[ ! -f a.out ]] && compile_error=true 2374 2385 continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN 2375 2386 elif [[ $localhost = lcsgih ]] 2376 2387 then 2377 printf " compiler is called via ssh on \"hicegate2\" \n" 2378 ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load mpt; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 " 2379 # ssh 130.75.4.102 -l $usern ". /usr/share/modules/init/bash; module load mvapich2; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 " 2380 # print ". /usr/share/modules/init/bash; module load mpt; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" " | ssh ${usern}@130.75.4.102 2>&1 2388 printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n" 2389 ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 " 2381 2390 [[ ! -f a.out ]] && compile_error=true 2382 2391 continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN … … 2830 2839 fi 2831 2840 printf "\n\n" 2832 # ulimit -s 300000 # A too large stack size causes problems2833 # export MV2_NUM_PORTS=22834 # export MV2_CPU_MAPPING=0:1:2:32835 # mpiexec ./a.out $ROPTS2836 # export MPI_LAUNCH_TIMEOUT=3602837 2841 echo "no_coupling" > runfile_atmos 2838 mpiexec_mpt -np $ii ./a.out $ROPTS 2842 if [[ $( echo $mpilib | cut -c1-3 ) = mpt ]] 2843 then 2844 # export MPI_LAUNCH_TIMEOUT=360 2845 mpiexec_mpt -np $ii ./a.out $ROPTS 2846 elif [[ $( echo $mpilib | cut -c1-3 ) = mva ]] 2847 then 2848 # ulimit -s 300000 # A too large stack size causes problems 2849 # export MV2_NUM_PORTS=2 2850 # export MV2_CPU_MAPPING=0:1:2:3 2851 mpiexec ./a.out $ROPTS 2852 fi 2839 2853 else 2840 2854 printf "\n +++ no debug available on \"$localhost\" " … … 2998 3012 if [[ $host = lcsgih || $host = lcsgib ]] 2999 3013 then 3000 # ulimit -s 300000 # A too large stack size causes problems 3001 # export MV2_NUM_PORTS=2 3002 # export MV2_CPU_MAPPING=0:1:2:3 3003 # mpiexec ./a.out $ROPTS 3004 # export MPI_LAUNCH_TIMEOUT=360 3005 mpiexec_mpt -np $ii ./a.out $ROPTS 3014 if [[ $( echo $mpilib | cut -c1-3 ) = mpt ]] 3015 then 3016 # export MPI_LAUNCH_TIMEOUT=360 3017 mpiexec_mpt -np $ii ./a.out $ROPTS 3018 elif [[ $( echo $mpilib | cut -c1-3 ) = mva ]] 3019 then 3020 # ulimit -s 300000 # A too large stack size causes problems 3021 # export MV2_NUM_PORTS=2 3022 # export MV2_CPU_MAPPING=0:1:2:3 3023 mpiexec ./a.out $ROPTS 3024 fi 3006 3025 elif [[ $host = lcxt4 ]] 3007 3026 then … … 3027 3046 then 3028 3047 3029 mpiexec_mpt -np $iia ./palm $ROPTS < runfile_atmos & 3030 mpiexec_mpt -np $iio ./palm $ROPTS < runfile_ocean & 3048 if [[ $( echo $mpilib | cut -c1-3 ) = mpt ]] 3049 then 3050 # export MPI_LAUNCH_TIMEOUT=360 3051 mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos & 3052 mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean & 3053 elif [[ $( echo $mpilib | cut -c1-3 ) = mva ]] 3054 then 3055 # ulimit -s 300000 # A too large stack size causes problems 3056 # export MV2_NUM_PORTS=2 3057 # export MV2_CPU_MAPPING=0:1:2:3 3058 mpiexec -n $iia ./a.out $ROPTS < runfile_atmos & 3059 mpiexec -n $iio ./a.out $ROPTS < runfile_ocean & 3060 fi 3031 3061 3032 3062 elif [[ $host = lcxt4 ]] … … 3051 3081 then 3052 3082 3053 mpiexec_mpt -np $ii a.out $ROPTS < runfile_atmos 3083 if [[ $( echo $mpilib | cut -c1-3 ) = mpt ]] 3084 then 3085 # export MPI_LAUNCH_TIMEOUT=360 3086 mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos 3087 elif [[ $( echo $mpilib | cut -c1-3 ) = mva ]] 3088 then 3089 # ulimit -s 300000 # A too large stack size causes problems 3090 # export MV2_NUM_PORTS=2 3091 # export MV2_CPU_MAPPING=0:1:2:3 3092 mpiexec ./a.out $ROPTS < runfile_atmos 3093 fi 3054 3094 3055 3095 elif [[ $host = lcxt4 ]] -
palm/trunk/SCRIPTS/subjob
r210 r221 703 703 704 704 . /usr/share/modules/init/bash 705 module load mpt/1.21705 module load $mpilib 706 706 # module load mvapich2/1.2rc1-intel 707 707 # module load mvapich2 -
palm/trunk/SOURCE/CURRENT_MODIFICATIONS
r217 r221 9 9 DVRP arguments changed to single precision, mode pathlines added. 10 10 11 User can add additional routines in files user_additional_routines .f9011 User can add additional routines in files user_additional_routines 12 12 13 13 User can check user parameters and deduce further quantities in user_check_parameters … … 76 76 of grid points do not match (read_3d_binary) 77 77 78 advec_particles, combine_plot_fields, data_output_2d, header, production_e, read_3d_binary 78 Bugfix: abort in case that absolute temperature is below zero (init_cloud_physics) 79 80 advec_particles, combine_plot_fields, data_output_2d, header, init_cloud_physics, production_e, read_3d_binary -
palm/trunk/SOURCE/init_cloud_physics.f90
r98 r221 4 4 ! Actual revisions: 5 5 ! ----------------- 6 ! 6 ! Bugfix: abort in case that absolute temperature is below zero 7 7 ! 8 8 ! Former revisions: … … 62 62 t_surface = pt_surface * ( surface_pressure / 1000.0 )**0.286 63 63 DO k = nzb, nzt+1 64 ! 65 !-- Check temperature in case of too large domain height 66 IF ( ( t_surface - g/cp * zu(k) ) < 0.0 ) THEN 67 WRITE( message_string, * ) 'absolute temperature < 0.0 at zu(', k, & 68 ') = ', zu(k) 69 CALL handle_palm_message( 'init_cloud_physics', 'PA0142', 1, 2, 0, 6, & 70 0 ) 71 ENDIF 64 72 hyp(k) = surface_pressure * 100.0 * & 65 73 ( (t_surface - g/cp * zu(k)) / t_surface )**(1.0/0.286)
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