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source: palm/trunk/SCRIPTS/mrun @ 220

Last change on this file since 220 was 220, checked in by raasch, 16 years ago
some small bugfixes in user_module, user_read_restart_data, read_3d_binary, flow_statistics and mrun
Property svn:keywords set to `Id Rev`
File size: 155.1 KB

Line
1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 220 2008-12-18 07:00:36Z raasch $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
117	# + netcdf/dvrp-options are read from configuration
118	# file, host identifier (local_host) is read from
119	# config file, code related to ftp filetransfer
120	# removed (incl. option -f)
121	# 19/06/07 - Siggi - time limit for cdata jobs increased
122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
123	# if new option -Y (coupling) is given,
124	# output of executables to aout_output removed,
125	# messages are immediately written to stdout instead
126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
128	# variables out to the nodes in coupled mode -disabled-
129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
131	# environment variables out to the nodes in coupled mode
132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
133	# suggestions
134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
135	# argument -g group_number, admit all sla* node_usage
136	# queues
137	# 30/10/07 - Marcus - further adjustments for queues on lctit
138	# 14/02/08 - Bjoern - link of restart files with long file name possible
139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
140	# true, mrun tries "ln -f" on local output and resorts
141	# to "cp" or "cp -r" on error
142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
143	# which allows the user to choose his own job catalog
144	# by setting job_catalog in the configuration file
145	# (default is ~/job_queue),
146	# workaround for mpiexec with -env option,
147	# adjustments for lcxt4 (Bergen Center for Computational
148	# Science)
149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
150	# true, mrun tries "ln -f" on local input and resorts
151	# to "cp" or "cp -r" on error
152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
153	# 14/07/08 - Siggi - adjustments for lcsgih
154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
158	# argument
159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
160	# file
161	# 11/11/08 - Siggi - rules for using user code files changed: user
162	# code splitted into one file per subroutine,
163	# user can provide his/her own makefile, only
164	# default source-code filenames are allowed
165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
166
167
168
169	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
170
171	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
172	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
173	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
174
175	AddFilenames=""
176	additional_conditions=""
177	add_source_path=""
178	afname=""
179	archive_save=true
180	archive_system=none
181	compiler_name=""
182	cond1=""
183	cond2=""
184	config_file=.mrun.config
185	coupled_dist=""
186	coupled_mode="mpi1"
187	cpp_opts=""
188	cpp_options=""
189	cpumax=0
190	cpurest=0
191	delete_temporary_catalog=true
192	do_batch=false
193	do_compile=true
194	do_remote=false
195	do_stagein=true
196	do_stageout=true
197	do_trace=false
198	email_notification=""
199	exclude=""
200	executable=""
201	execution_error=false
202	fimm=false
203	fname=test
204	fromhost=""
205	global_revision=""
206	group_number=none
207	host=""
208	host_file=""
209	hp=""
210	ignore_archive_error=false
211	input_list=""
212	interpreted_config_file=""
213	job_catalog="~/job_queue"
214	job_on_file=""
215	keep_data_from_previous_run=false
216	link_local_input=false
217	link_local_output=false
218	localhost_realname=$(hostname)
219	local_compile=false
220	locat=normal
221	mainprog=""
222	makefile=""
223	mc=$0
224	while [[ $(echo $mc \| grep -c "/") != 0 ]]
225	do
226	mc=`echo $mc \| cut -f2- -d"/"`
227	done
228	module_files=""
229	mrun_script_name=$mc
230	netcdf_inc=""
231	netcdf_lib=""
232	netcdf_support=false
233	node_usage=default
234	numprocs=""
235	numprocs_atmos=0
236	numprocs_ocean=0
237	OOPT=""
238	openmp=false
239	output_list=""
240	package_list=""
241	punkte="..........................................................."
242	queue=none
243	read_from_config=""
244	restart_run=false
245	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
246	if [[ $return_addres = 130.75.105.158 ]]
247	then
248	return_addres=172.20.25.41
249	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
250	fi
251	# if [[ $return_addres = 210.117.65.1 ]]
252	# if [[ $(nslookup `hostname` 2>&1 \| grep -c 210.117.65.1) = 1 ]]
253	# then
254	# [[ $localhost_realname = gfdl3.yonsei.ac.kr ]] && return_addres=165.132.26.56
255	# fi
256	return_password=""
257	return_username=$LOGNAME
258	remotecall=false
259	remote_username=""
260	run_coupled_model=false
261	run_mode=""
262	scirocco=false
263	store_on_archive_system=true
264	striche=" ----------------------------------------------------------------------------"
265	silent=false
266	source_list=""
267	source_path=SOURCE
268	tasks_per_node=""
269	threads_per_task=1
270	tmpcreate=false
271	tmp_data_catalog=""
272	transfer_problems=false
273	usern=$LOGNAME
274	working_directory=`pwd`
275	TOPT=""
276	XOPT=""
277	zeit=$( date \| cut -c 12-19 )
278
279	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
280	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
281
282	typeset -R30 calltime
283	typeset -L20 spalte1
284	typeset -L40 spalte2
285	typeset -L60 spalte3
286	typeset -L35 string1=`date`
287	typeset -L12 string2=$usern
288	typeset -L12 string3=$localhost_realname
289	typeset -L12 string4
290	typeset -L12 string5
291	typeset -L30 version="MRUN 2.0 Rev$Rev: 220 $"
292
293
294
295	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
296	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
297
298	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
299	# EXPORTIERT WERDEN
300	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
301	export group_number input_list memory numprocs output_list queue run_mode
302
303
304
305	# FEHLERBEHANDLUNG
306	# BEI EXIT:
307	trap 'rm -rf $working_directory/tmp_mrun
308	if [[ $locat != localhost ]]
309	then
310	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
311	# then
312	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
313	#MRUN-calls on $localhost
314	#
315	#date and time user localhost remotehost termination mrun-command
316	#--------------------------------------------------------------------------------------------------------------------
317	#%STATEND%
318	# chmod 666 ${mrun_path}/statistik/mrun_statistik
319	# fi
320	#
321	# # EINTRAG IN DIE STATISTIK-DATEI
322	# string4=$host
323	# string5=$locat
324	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
325	# then
326	# if [[ $do_batch = true ]]
327	# then
328	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
329	# else
330	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
331	# fi
332	# fi
333	echo " " > /dev/null
334	fi
335
336	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
337	then
338
339	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
340	(( i = 0 ))
341	while (( i < iec ))
342	do
343	(( i = i + 1 ))
344	printf "\n *** Execution of ERROR-command:\n"
345	printf " >>> ${err_command[$i]}\n"
346	eval ${err_command[$i]}
347	done
348	if [[ -n $interpreted_config_file ]] then
349	rm -rf $interpreted_config_file
350	fi
351	if [[ -n .mrun_environment ]] then
352	rm -rf .mrun_environment
353	fi
354	if [[ $tmpcreate = true ]]
355	then
356	printf "\n *** Contents of \"$TEMPDIR\":\n"
357	ls -al; cd
358	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
359	fi
360	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
361	then
362	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
363	fi
364	printf "\n\n+++ MRUN killed \n\n"
365	elif [[ $locat != control_c ]]
366	then
367	printf "\n\n --> all actions finished\n\n"
368	printf " Bye, bye $usern !!\n\n"
369	fi' exit
370
371
372	# BEI TERMINAL-BREAK:
373	trap 'rm -rf $working_directory/tmp_mrun
374	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
375	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
376	then
377	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
378	fi
379	printf "\n+++ MRUN killed by \"^C\" \n\n"
380	locat=control_c
381	exit
382	' 2
383
384
385	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
386	# BEEN SET
387	if [[ "$PALM_BIN" = "" ]]
388	then
389	printf "\n +++ environment variable PALM_BIN has not been set"
390	printf "\n please set it to the directory where the PALM scripts are located"
391	locat=palm_bin; exit
392	fi
393	export PATH=$PALM_BIN:$PATH
394
395
396
397	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
398	# FUER FOLGEJOBS BENOETIGT WIRD
399	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:Y: option
400	do
401	case $option in
402	(a) afname=$OPTARG;;
403	(A) store_on_archive_system=false; mc="$mc -A";;
404	(b) do_batch=true; mc="$mc -b";;
405	(B) delete_temporary_catalog=false; mc="$mc -B";;
406	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
407	(C) restart_run=true; mc="$mc -C";;
408	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
409	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
410	(F) job_on_file="-D"; mc="$mc -F";;
411	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
412	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
413	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
414	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
415	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
416	(I) ignore_archive_error=true; mc="$mc -I";;
417	(k) keep_data_from_previous_run=true; mc="$mc -k";;
418	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
419	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
420	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
421	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
422	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
423	(O) use_openmp=true; mc="$mc -O";;
424	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
425	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
426	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
427	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
428	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
429	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
430	(S) read_from_config=false; mc="$mc -S";;
431	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
432	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
433	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
434	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
435	(v) silent=true; mc="$mc -v";;
436	(x) do_trace=true;set -x; mc="$mc -x";;
437	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
438	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
439	(\?) printf "\n +++ unknown option $OPTARG \n"
440	printf "\n --> type \"$0 ?\" for available options \n"
441	locat=parameter;exit;;
442	esac
443	done
444
445
446	# EVTL. POSITIONSPARAMETER EINLESEN
447	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
448	shift OPTIND-1
449
450
451	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
452	if [[ "$1" = "?" ]]
453	then
454	(printf "\n *** mrun can be called as follows:\n"
455	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -Y.. <modus>\n"
456	printf "\n Description of available options:\n"
457	printf "\n Option Description Default-Value"
458	printf "\n -a base name of input files equiv. -d"
459	printf "\n -A no archiving when using file-attribute fl"
460	printf "\n -b batch-job on local machine ---"
461	printf "\n -B do not delete temporary directory at end ---"
462	printf "\n -c configuration file .mrun.config"
463	printf "\n -d base name of files attached to program test"
464	printf "\n -D preprocessor(cpp)-directives \"\" "
465	printf "\n -F create remote job file only ---"
466	printf "\n -h execution host $localhost_realname"
467	printf "\n -i INPUT control list \"\" "
468	printf "\n -I archiving errors of previous batch-jobs"
469	printf "\n will be ignored"
470	printf "\n -k keep data from previous run"
471	printf "\n -K additional conditions for controling"
472	printf "\n usage of conditional code and"
473	printf "\n env-variables in configuration file \"\" "
474	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
475	printf "\n -M Makefile name Makefile"
476	printf "\n -n node usage (shared/not_shared) depending on -h"
477	printf "\n -o OUTPUT control list \"\" "
478	printf "\n -O use OpenMP ---"
479	printf "\n -p software package list \"\" "
480	printf "\n -q queue \"$queue\" "
481	printf "\n -r run control list (combines -i -o) \"\" "
482	printf "\n -s filenames of routines to be compiled \"\" "
483	printf "\n must end with .f, .f90, .F, or .c !"
484	printf "\n use \"..\" for more than one file and wildcards"
485	printf "\n -s TEST compiles all files with w-permit"
486	printf "\n -S config file interpreted by shellscript ---"
487	printf "\n -t allowed cpu-time in seconds (batch) 0"
488	printf "\n -T tasks per node depending on -h"
489	printf "\n -u username on remote machine \"\" "
490	printf "\n -v no prompt for confirmation ---"
491	printf "\n -x tracing of mrun for debug purposes ---"
492	printf "\n -X # of processors (on parallel machines) 1"
493	printf "\n -Y run coupled model, \"#1 #2\" with"
494	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
495	printf "\n "
496	printf "\n Possible values of positional parameter <modus>:"
497	printf "\n \"?\" - this outline \n\n") \| more
498	exit
499	elif [[ "$1" != "" ]]
500	then
501	printf "\n +++ positional parameter $1 unknown \n"
502	locat=parameter; exit
503	fi
504
505
506
507	# KURZE STARTMELDUNG
508	printf "\n*** $version "
509	printf "\n will be executed. Please wait ..."
510
511
512
513	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
514	if [[ ! -f $config_file ]]
515	then
516	printf "\n\n +++ configuration file: "
517	printf "\n $config_file"
518	printf "\n does not exist"
519	locat=connect; exit
520	fi
521
522
523	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
524	line=""
525	grep "%host_identifier" $config_file > tmp_mrun
526	while read line
527	do
528	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
529	then
530	HOSTNAME=`echo $line \| cut -d" " -s -f2`
531	host_identifier=`echo $line \| cut -d" " -s -f3`
532	if [[ $localhost_realname = $HOSTNAME ]]
533	then
534	localhost=$host_identifier
535	break
536	fi
537	fi
538	done < tmp_mrun
539
540	if [[ "$localhost" = "" ]]
541	then
542	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
543	printf "\n for local host \"$localhost_realname\"."
544	printf "\n Please add line"
545	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
546	printf "\n to the configuration file."
547	locat=localhost; exit
548	fi
549
550
551	# HOSTSPEZIFISCHE VARIABLEN SETZEN
552	case $localhost_realname in
553	(breg-en0\|berni-en0) archive_system=tivoli;;
554	(cs*) archive_system=ut;;
555	(fimm.bccs.uib.no) fimm=true;;
556	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
557	(hreg-en0\|hanni-en0) archive_system=tivoli;;
558	(scirocco) scirocco=true;;
559	esac
560
561
562
563	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
564	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
565	[[ "$afname" = "" ]] && afname=$fname
566
567
568	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
569	if [[ "$run_mode" != "" ]]
570	then
571	input_list="$input_list $run_mode"
572	output_list="$output_list $run_mode"
573	fi
574
575
576	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
577	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
578	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
579	# STARTET)
580	if [[ "$fromhost" = "" ]]
581	then
582	fromhost=$localhost
583	fi
584
585
586	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
587	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
588	then
589	source_list=TEST
590	local_compile=true
591	host=$localhost
592	fi
593
594
595	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
596	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
597	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
598	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
599	if [[ -n $host && "$host" != $localhost ]]
600	then
601	do_batch=true
602	do_remote=true
603	case $host in
604	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|neck\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4) true;;
605	(*) printf "\n"
606	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
607	printf "\n is not available"
608	locat=nqs; (( iec = 0 )); exit;;
609	esac
610	else
611	host=$localhost
612	fi
613
614
615	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
616	if [[ -n $additional_conditions ]]
617	then
618	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
619	cond1=`echo $additional_conditions \| cut -d" " -f1`
620	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
621	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
622	if [[ -n $dummy ]]
623	then
624	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
625	locat=options; exit
626	fi
627	fi
628
629
630	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
631	if [[ $run_coupled_model = true ]]
632	then
633
634	if [[ -n $coupled_dist ]]
635	then
636
637	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
638	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
639
640	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
641	then
642
643	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
644	printf "\n PEs (total) : $numprocs"
645	printf "\n PEs (atmosphere): $numprocs_atmos"
646	printf "\n PEs (ocean) : $numprocs_ocean"
647	locat=coupling; exit
648
649	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
650	# THIS SHOULD BE REMOVED IN FUTURE
651	elif (( $numprocs_ocean != $numprocs_atmos ))
652	then
653
654	printf "\n +++ currently only 1:1 topologies are supported"
655	printf "\n PEs (total) : $numprocs"
656	printf "\n PEs (atmosphere): $numprocs_atmos"
657	printf "\n PEs (ocean) : $numprocs_ocean"
658	(( numprocs_atmos = $numprocs / 2 ))
659	(( numprocs_ocean = $numprocs / 2 ))
660	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
661
662	fi
663
664	else
665
666	(( numprocs_ocean = $numprocs / 2 ))
667	(( numprocs_atmos = $numprocs / 2 ))
668
669	fi
670	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
671
672	# GET coupled_mode FROM THE CONFIG FILE
673	line=""
674	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
675	while read line
676	do
677	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
678	then
679	coupled_mode="mpi2"
680	fi
681	done < tmp_mrun
682
683	fi
684
685
686	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
687	# ARCHIVIERUNG FEHLGESCHLAGEN IST
688	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
689	then
690	if [[ $ignore_archive_error = false ]]
691	then
692	printf "\n +++ data archiving of previous run failed"
693	printf "\n see directory \~/job_queue on remote machine"
694	locat=archive; exit
695	else
696	printf "\n +++ warning: data archiving in a previous run failed"
697	printf "\n MRUN continues, trying to get backup copy"
698	fi
699	fi
700
701
702
703	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
704	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
705	if [[ "$read_from_config" = false ]]
706	then
707
708	[[ $silent = false ]] && printf "\n Reading the configuration file... "
709	while read zeile
710	do
711	[[ $silent = false ]] && printf "."
712
713
714	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
715	# ERSETZEN
716	eval zeile=\"$zeile\"
717
718
719	# INTERPRETATION DER ZEILE
720	if [[ "$(echo $zeile)" = "" ]]
721	then
722	# LEERZEILE, KEINE AKTION
723	continue
724
725	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
726	then
727
728	# ZEILE IST KOMMENTARZEILE
729	true
730
731	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
732	then
733
734	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
735	zeile=$(echo $zeile \| cut -c2-)
736	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
737	var=`echo $zeile \| cut -d" " -f1`
738	value=`echo $zeile \| cut -d" " -s -f2`
739	for_host=`echo $zeile \| cut -d" " -s -f3`
740	for_cond1=`echo $zeile \| cut -d" " -s -f4`
741	for_cond2=`echo $zeile \| cut -d" " -s -f5`
742
743	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
744	then
745
746	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
747	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
748	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
749
750
751	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
752	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
753	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
754	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
755	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
756	# KONFIGURATIONSDATEI
757	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
758	then
759	eval $var=\$value
760
761	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
762	if [[ $do_trace = true ]]
763	then
764	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
765	fi
766	fi
767
768	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
769	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
770	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
771	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
772	if [[ $var = host ]]
773	then
774	if [[ -n $host && "$host" != $localhost ]]
775	then
776	do_batch=true
777	do_remote=true
778	case $host in
779	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|neck\|unics\|lcxt4) true;;
780	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
781	printf "\n is not available"
782	locat=nqs; exit;;
783	esac
784	else
785	host=$localhost
786	fi
787	fi
788
789	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
790	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
791	# DEN PROGRAMMEN BENOETIGT WERDEN
792	export $var
793	fi
794
795
796
797
798	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
799	then
800
801	# ZEILE DEFINIERT ERROR-KOMMANDO
802	(( iec = iec + 1 ))
803	zeile=$(echo $zeile \| cut -c4-)
804	err_command[$iec]="$zeile"
805
806	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
807	then
808
809	# ZEILE DEFINIERT INPUT-KOMMANDO
810	(( iic = iic + 1 ))
811	zeile=$(echo $zeile \| cut -c4-)
812	in_command[$iic]="$zeile"
813
814	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
815	then
816
817	# ZEILE DEFINIERT OUTPUT-KOMMANDO
818	(( ioc = ioc + 1 ))
819	zeile=$(echo $zeile \| cut -c4-)
820	out_command[$ioc]="$zeile"
821
822	else
823
824	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
825	# s2a: in/out - Feld
826	# s2b: loc - Feld (optional)
827	# s2c: tr/ar - Feld (optional)
828	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
829	s1=`echo $zeile \| cut -d" " -f1`
830	s2=`echo $zeile \| cut -d" " -s -f2`
831	s2a=$(echo $s2 \| cut -d":" -f1)
832	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
833	then
834	s2b=""
835	s2c=""
836	else
837	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
838	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
839	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
840	fi
841	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
842	s3=`echo $zeile \| cut -d" " -f3`
843	s4=`echo $zeile \| cut -d" " -s -f4`
844	s5=`echo $zeile \| cut -d" " -s -f5`
845	s6=`echo $zeile \| cut -d" " -s -f6`
846
847
848	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
849	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
850	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
851	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
852	# HANDEN SEIN MUSS (D.H. s2b = loc)
853	IFSALT="$IFS"; IFS="$IFS:"
854	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
855	then
856	found=false
857	for actual in $input_list
858	do
859	for formal in $s3
860	do
861	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
862	done
863	done
864	if [[ $found = true ]]
865	then
866	(( iin = iin + 1 ))
867	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
868	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
869	extin[$iin]=$s6
870	fi
871	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
872	then
873	found=false
874	for actual in $output_list
875	do
876	for formal in $s3
877	do
878	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
879	done
880	done
881	if [[ $found = true ]]
882	then
883	(( iout = iout + 1 ))
884	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
885	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
886	fi
887	elif [[ "$s2a" != in && "$s2a" != out ]]
888	then
889	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
890	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
891	locat=connect; exit
892	fi
893	IFS="$IFSALT"
894	fi
895	done < $config_file
896
897	else
898
899
900	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
901	[[ $silent = false ]] && printf "..."
902	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
903	export interpreted_config_file=.icf.$RANDOM
904
905
906
907	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
908	# VERFUEGUNG STELLEN
909	cat > .mrun_environment << %%END%%
910	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
911	config_file = '$config_file', do_remote = '$do_remote',
912	do_trace = '$do_trace', host = '$host',
913	input_list = '$input_list', icf = '$interpreted_config_file',
914	localhost = '$localhost', output_list = '$output_list' /
915
916	%%END%%
917
918	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
919	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
920	mrun_memory=$memory
921	mrun_group_number=$group_number
922	mrun_cpumax=$cpumax
923	mrun_numprocs=$numprocs
924
925	if [[ $localhost_realname = "gate" ]]
926	then
927	interpret_config_gate.x
928	else
929	interpret_config.x
930	fi
931	rm .mrun_environment
932
933
934	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
935	chmod u+x $interpreted_config_file
936	export PATH=$PATH:.
937	. $interpreted_config_file
938	rm $interpreted_config_file
939
940
941	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
942	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
943	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
944	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
945	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
946
947	fi
948
949
950	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
951	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
952	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
953	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
954	if [[ "$SOURCES_COMPLETE" = "" ]]
955	then
956
957	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
958	# VEREINBART WURDE
959	source_path=""
960	line=""
961	grep "%source_path" $config_file > tmp_mrun
962	while read line
963	do
964	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
965	then
966	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
967	then
968	global_source_path=`echo $line \| cut -d" " -f2`
969	fi
970	fi
971	done < tmp_mrun
972
973	line=""
974	found=false
975	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
976	while read line
977	do
978	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
979	then
980	if [[ $found = true ]]
981	then
982	printf "\n\n +++ more than one source path found in configuration file"
983	printf "\n for local host \"$localhost\" "
984	locat=source_path; exit
985	fi
986	source_path=`echo $line \| cut -d" " -f2`
987	found=true
988	fi
989	done < tmp_mrun
990	rm tmp_mrun
991
992	if [[ "$source_path" = "" ]]
993	then
994	if [[ "$global_source_path" != "" ]]
995	then
996	source_path=$global_source_path
997	else
998	printf "\n\n +++ no source path found in configuration file"
999	printf "\n for local host \"$localhost\" "
1000	locat=source_path; exit
1001	fi
1002	fi
1003	eval source_path=$source_path
1004
1005	if [[ ! -d $source_path ]]
1006	then
1007	printf "\n\n +++ source path \"$source_path\" on local host"
1008	printf "\n \"$localhost\" does not exist"
1009	locat=source_path; exit
1010	fi
1011
1012	fi
1013
1014
1015	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1016	# DURCH OPTION -G MITGETEILT)
1017	if [[ "$global_revision" = "" ]]
1018	then
1019	global_revision=`svnversion $source_path 2>/dev/null`
1020	global_revision="Rev: $global_revision"
1021	fi
1022
1023
1024	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1025	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1026	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1027	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1028	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1029	if [[ -n $host && "$host" != $localhost ]]
1030	then
1031	do_batch=true
1032	do_remote=true
1033	case $host in
1034	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|neck\|unics\|lcxt4) true;;
1035	(*) printf "\n"
1036	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1037	printf "\n is not available"
1038	locat=nqs; (( iec = 0 )); exit;;
1039	esac
1040	else
1041	host=$localhost
1042	fi
1043
1044
1045	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1046	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1047	then
1048
1049	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1050	if [[ ! -n $numprocs ]]
1051	then
1052	printf "\n"
1053	printf "\n +++ option \"-K parallel\" requires additional specification"
1054	printf "\n of the number of processors to be used by"
1055	printf "\n mrun-option \"-X\" or by environment-variable"
1056	printf "\n \"numprocs\" in the configuration file"
1057	locat=numprocs; (( iec = 0 )); exit
1058	fi
1059
1060	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1061	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1062	# GESAMTPROZESSORANZAHL IST
1063	if [[ $host = nech \|\| $host = neck \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1064	then
1065	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1066	(( ival = $tasks_per_node ))
1067	(( pes = numprocs ))
1068	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1069	# then
1070	# (( pes = pes - 1 ))
1071	# fi
1072	(( ii = pes / ival ))
1073	if (( pes - ii * ival > 0 ))
1074	then
1075	printf "\n"
1076	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1077	printf "\n divisor of the total number of processors (option \"-X\")"
1078	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1079	locat=tasks_per_node; (( iec = 0 )); exit
1080	fi
1081	fi
1082
1083	# IBMY HAT NUR EINEN KNOTEN
1084	if [[ $host = ibmy ]]
1085	then
1086	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1087	then
1088	printf "\n"
1089	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1090	printf "\n total number of processors (option \"-X\")"
1091	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1092	locat=tasks_per_node; (( iec = 0 )); exit
1093	fi
1094	fi
1095
1096	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1097	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1098	if [[ $use_openmp = true ]]
1099	then
1100	threads_per_task=$tasks_per_node
1101	tasks_per_node=1
1102	fi
1103	OOPT="-O $threads_per_task"
1104	TOPT="-T $tasks_per_node"
1105
1106	# GESAMTZAHL DER KNOTEN BESTIMMEN
1107	if [[ "$tasks_per_node" != "" ]]
1108	then
1109	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1110	fi
1111
1112	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1113	# SETZEN
1114	if [[ $node_usage = default ]]
1115	then
1116	if [[ $host = ibms ]]
1117	then
1118	node_usage=shared
1119	elif [[ $host = lctit ]]
1120	then
1121	node_usage=sla3
1122	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1123	then
1124	node_usage=singlejob
1125	else
1126	node_usage=not_shared
1127	fi
1128	fi
1129
1130	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]]
1131	then
1132	printf "\n"
1133	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1134	printf "\n \"shared\" or \"not_shared\""
1135	locat=tasks_per_node; (( iec = 0 )); exit
1136	fi
1137
1138	fi
1139
1140	# PRUEFEN, OB HOSTFILE EXISTIERT
1141	if [[ -n $hostfile ]]
1142	then
1143	if [[ ! -f $hostfile ]]
1144	then
1145	printf "\n"
1146	printf "\n +++ hostfile \"$hostfile\" does not exist"
1147	locat=hostfile; exit
1148	fi
1149	fi
1150
1151	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1152	if [[ $host = ibmy && $do_remote = false ]]
1153	then
1154	if [[ ! -f $HOME/.rhosts ]]
1155	then
1156	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1157	printf "\n\n *** file:"
1158	printf "\n $HOME/.rhosts"
1159	printf "\n was created\n"
1160	fi
1161	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1162	then
1163	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1164	printf "\n\n *** file:"
1165	printf "\n $HOME/.rhosts"
1166	printf "\n was extended by the name of the current host\n"
1167	fi
1168	fi
1169
1170
1171
1172	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1173	if [[ $queue = none ]]
1174	then
1175	case $host in
1176	(ibmb) if [[ $node_usage = shared ]]
1177	then
1178	queue=cshare
1179	else
1180	queue=csolo
1181	fi;;
1182	(ibmh) if [[ $node_usage = shared ]]
1183	then
1184	queue=cshare
1185	else
1186	queue=csolo
1187	fi;;
1188	(ibmy) queue=parallel;;
1189	(lcsgib) queue=bigq;;
1190	(lcsgih) queue=bigq;;
1191	(lctit) queue=sla3;;
1192	(nech) queue=none;;
1193	(neck) queue=P;;
1194	(unics) queue=unics;;
1195	esac
1196	fi
1197
1198
1199	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1200	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1201	# ERMITTELN
1202	(( i = 0 ))
1203	while (( i < iin ))
1204	do
1205	(( i = i + 1 ))
1206	(( maxcycle = 0 ))
1207
1208	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1209	if [[ "${actionin[$i]}" = di ]]
1210	then
1211	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1212	# REM-MASCHINE AUSWERTEN
1213	eval filename=${pathin[$i]}/${endin[$i]}
1214	else
1215	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1216	# REM-MASCHINE AUSWERTEN
1217	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1218	fi
1219
1220	# PRUEFEN AUF VORHANDENSEIN
1221	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1222	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1223	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1224	then
1225	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1226	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1227	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1228	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1229	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1230	if [[ "${transin[$i]}" != "locopt" ]]
1231	then
1232	printf "\n\n +++ INPUT-file: "
1233	if [[ "${extin[$i]}" = "" ]]
1234	then
1235	printf "\n $filename"
1236	else
1237	printf "\n $filename.${extin[$i]}"
1238	fi
1239	printf "\n does not exist\n"
1240	locat=input; exit
1241	else
1242	transin[$i]="unavailable"
1243	fi
1244	else
1245
1246	# ZYKLUSNUMMER FESTSTELLEN
1247	ls -1 -d $filename > filelist 2>/dev/null
1248	ls -1 -d $filename.* >> filelist 2>/dev/null
1249	while read zeile
1250	do
1251	cycle=$(print $zeile \| cut -f2 -d".")
1252	if [[ "$cycle" = "$zeile" ]]
1253	then
1254	(( icycle = 0 ))
1255	elif [[ "$cycle" = "${extin[$i]}" ]]
1256	then
1257	(( icycle = 0 ))
1258	else
1259	(( icycle = $cycle ))
1260	fi
1261	if (( icycle > maxcycle ))
1262	then
1263	(( maxcycle = icycle ))
1264	file_to_be_used=$zeile
1265	fi
1266	done <filelist
1267	rm filelist
1268
1269	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1270	if (( maxcycle > 0 ))
1271	then
1272	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1273	then
1274	filename=${filename}.$maxcycle.${extin[$i]}
1275	else
1276	filename=${filename}.$maxcycle
1277	fi
1278	else
1279	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1280	then
1281	filename=${filename}.${extin[$i]}
1282	fi
1283	fi
1284
1285	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1286	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1287	absnamein[$i]=$filename
1288	if (( maxcycle > 0 ))
1289	then
1290	if [[ "${actionin[$i]}" = di ]]
1291	then
1292	frelin[$i]=${endin[$i]}.$maxcycle
1293	else
1294	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1295	fi
1296	else
1297	if [[ "${actionin[$i]}" = di ]]
1298	then
1299	frelin[$i]=${endin[$i]}
1300	else
1301	frelin[$i]=${afname}${endin[$i]}
1302	fi
1303	fi
1304
1305	fi
1306	done
1307
1308
1309	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1310	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1311	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1312	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1313	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1314	(( i = 0 ))
1315	while (( i < iout ))
1316	do
1317	(( i = i + 1 ))
1318	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1319	then
1320	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = trpe ]]
1321	then
1322	actionout[$i]=""
1323	elif [[ "${actionout[$i]}" = tra ]]
1324	then
1325	actionout[$i]=a
1326	fi
1327	(( maxcycle = 0 ))
1328	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1329	eval catalogname=${pathout[$i]}
1330	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1331	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1332	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1333	then
1334
1335	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1336	if cat /dev/null > $filename
1337	then
1338	rm $filename
1339	else
1340
1341	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1342	if [[ ! -d $catalogname ]]
1343	then
1344	if mkdir -p $catalogname
1345	then
1346	printf "\n\n *** directory:"
1347	printf "\n $catalogname"
1348	printf "\n was created\n"
1349	else
1350	printf "\n\n +++ OUTPUT-file:"
1351	printf "\n $filename"
1352	printf "\n cannot be created, because directory does not exist"
1353	printf "\n and cannot be created either"
1354	printf "\n"
1355	locat=output ; exit
1356	fi 2>/dev/null
1357	else
1358	printf "\n\n +++ OUTPUT-file:"
1359	printf "\n $filename"
1360	printf "\n cannot be created, although directory exists"
1361	printf "\n"
1362	locat=output ; exit
1363	fi
1364	fi 2>/dev/null
1365	else
1366
1367	# ZYKLUSNUMMER FESTSTELLEN
1368	ls -1 -d $filename > filelist 2>/dev/null
1369	ls -1 -d $filename.* >> filelist 2>/dev/null
1370	while read zeile
1371	do
1372	cycle=$(print $zeile \| cut -f2 -d".")
1373	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1374	then
1375	(( icycle = 1 ))
1376	else
1377	(( icycle = $cycle + 1 ))
1378	fi
1379	if (( icycle > maxcycle ))
1380	then
1381	(( maxcycle = icycle ))
1382	fi
1383	done <filelist
1384	rm filelist
1385	fi
1386
1387	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1388	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1389	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1390	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1391	if [[ "${actionout[$i]}" != a ]]
1392	then
1393	if (( maxcycle > 0 ))
1394	then
1395	filename=${filename}.$maxcycle
1396	if cat /dev/null > $filename
1397	then
1398	rm $filename
1399	else
1400	printf "\n +++ OUTPUT-file:"
1401	printf "\n $filename"
1402	printf "\n cannot be created"
1403	locat=output ; exit
1404	fi
1405	fi
1406	else
1407	(( maxcycle = maxcycle - 1 ))
1408	if (( maxcycle > 0 ))
1409	then
1410	filename=${filename}.$maxcycle
1411	fi
1412	fi
1413
1414	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1415	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1416	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1417	pathout[$i]=$filename
1418	if (( maxcycle > 0 ))
1419	then
1420	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1421	else
1422	frelout[$i]=${fname}${endout[$i]}
1423	fi
1424
1425	fi
1426	done
1427
1428
1429	# DAS DVRP-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1430	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1431	then
1432	if [[ "$dvrp_inc" = "" ]]
1433	then
1434	printf "\n\n +++ no value for \"dvrp_inc\" given in configuration file"
1435	printf "\n This is required for the dvrp_graphics package.\n"
1436	locat=dvrp; exit
1437	fi
1438	if [[ "$dvrp_lib" = "" ]]
1439	then
1440	printf "\n\n +++ no value for \"dvrp_lib\" given in configuration file"
1441	printf "\n This is required for the dvrp_graphics package.\n"
1442	locat=dvrp; exit
1443	fi
1444	fi
1445
1446
1447	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1448	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1449	# UEBERSETZT ZU WERDEN)
1450	if [[ "$mainprog" = "" && "$executable" = "" ]]
1451	then
1452	printf "\n +++ neither main program nor executable defined"
1453	locat=source; exit
1454	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1455	then
1456	printf "\n +++ main program as well as executable defined"
1457	locat=source; exit
1458	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1459	then
1460	do_compile=false
1461	fi
1462
1463
1464	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1465	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1466	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1467	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1468	then
1469	rm -rf SOURCES_FOR_RUN_$fname
1470	mkdir SOURCES_FOR_RUN_$fname
1471	fi
1472
1473
1474	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1475	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1476	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1477	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1478	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1479	then
1480
1481	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1482	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1483
1484
1485	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1486	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1487	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1488	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1489	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1490	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1491	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1492	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1493	# GESAMMELT
1494	if [[ "$source_list" = WRITE_PERMIT ]]
1495	then
1496
1497	source_list=""
1498	cd $source_path
1499
1500
1501	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1502	Names=$(ls -1 *.f90 2>&1)
1503	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1504	Names=$(ls -1 *.F90 2>&1)
1505	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1506	Names=$(ls -1 *.F 2>&1)
1507	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1508	Names=$(ls -1 *.f 2>&1)
1509	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1510	Names=$(ls -1 *.c 2>&1)
1511	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1512
1513
1514	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1515	for dateiname in $Filenames
1516	do
1517	if [[ -w $dateiname ]]
1518	then
1519	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1520	then
1521	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1522	source_list=$source_list"$dateiname "
1523	fi
1524	fi
1525	done
1526
1527	cd - > /dev/null
1528
1529
1530	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1531	then
1532
1533	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1534	source_list=""
1535	cd $source_path
1536
1537
1538	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1539	if [[ ! -d .svn ]]
1540	then
1541	printf "\n\n +++ source directory"
1542	printf "\n \"$source_path\" "
1543	printf "\n is not under control of \"subversion\"."
1544	printf "\n Please do not use mrun-option \"-s LOCALLY MODIFIED\"\n"
1545	fi
1546
1547
1548	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1549	Filenames=""
1550	svn status > tmp_mrun
1551	while read line
1552	do
1553	firstc=`echo $line \| cut -c1`
1554	if [[ $firstc = M \|\| $firstc = "?" ]]
1555	then
1556	Name=`echo "$line" \| cut -c8-`
1557	extension=`echo $Name \| cut -d. -f2`
1558	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1559	then
1560	Filenames="$Filenames "$Name
1561	fi
1562	fi
1563	done < tmp_mrun
1564
1565
1566	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1567	for dateiname in $Filenames
1568	do
1569	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1570	source_list=$source_list"$dateiname "
1571	done
1572
1573	cd - > /dev/null
1574
1575
1576	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1577	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1578	# VORHANDEN
1579	elif [[ "$source_list" != "" && $restart_run != true ]]
1580	then
1581
1582	cd $source_path
1583
1584	for filename in $source_list
1585	do
1586
1587	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1588	if [[ $(print $filename \| grep -c "/") != 0 ]]
1589	then
1590	printf "\n +++ source code file: $filename"
1591	printf "\n must not contain (\"/\") "
1592	locat=source; exit
1593	fi
1594
1595	if [[ ! -f $filename ]]
1596	then
1597	printf "\n +++ source code file: $filename"
1598	printf "\n does not exist"
1599	locat=source; exit
1600	else
1601	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1602	fi
1603
1604	done
1605
1606	cd - > /dev/null
1607
1608	fi
1609
1610
1611	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1612	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1613	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1614	if [[ $restart_run != true ]]
1615	then
1616
1617	if [[ ! -f "$source_path/$mainprog" ]]
1618	then
1619	printf "\n\n +++ main program: $mainprog"
1620	printf "\n does not exist in source directory"
1621	printf "\n \"$source_path\"\n"
1622	locat=source; exit
1623	else
1624	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1625	then
1626	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1627	source_list=${mainprog}" $source_list"
1628	fi
1629	fi
1630	fi
1631
1632
1633	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1634	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1635	if [[ "$restart_run" != true ]]
1636	then
1637	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1638	if [[ ! -f $makefile ]]
1639	then
1640	printf "\n +++ file \"$makefile\" does not exist"
1641	locat=make; exit
1642	else
1643	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1644	fi
1645	fi
1646
1647
1648	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1649	if [[ $restart_run != true && "$add_source_path" != "" ]]
1650	then
1651
1652	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1653	if [[ ! -d $add_source_path ]]
1654	then
1655	printf "\n\n +++ WARNING: additional source code directory"
1656	printf "\n \"$add_source_path\" "
1657	printf "\n does not exist or is not a directory."
1658	printf "\n No source code will be used from this directory!\n"
1659	add_source_path=""
1660	sleep 3
1661	else
1662
1663	cd $add_source_path
1664	found=false
1665
1666	Names=$(ls -1 *.f90 2>&1)
1667	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1668	Names=$(ls -1 *.F90 2>&1)
1669	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1670	Names=$(ls -1 *.F 2>&1)
1671	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1672	Names=$(ls -1 *.f 2>&1)
1673	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1674	Names=$(ls -1 *.c 2>&1)
1675	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1676
1677	cd - > /dev/null
1678	cd SOURCES_FOR_RUN_$fname
1679
1680	# COPY MAKEFILE IF EXISTING
1681	if [[ -f $add_source_path/Makefile ]]
1682	then
1683	printf "\n\n *** user Makefile from directory"
1684	printf "\n \"$add_source_path\" is used \n"
1685	sleep 1
1686	cp $add_source_path/Makefile .
1687	fi
1688
1689	for dateiname in $AddFilenames
1690	do
1691	if [[ -f $dateiname ]]
1692	then
1693	printf "\n +++ source code file \"$dateiname\" found in additional"
1694	printf "\n source code directory \"$add_source_path\" "
1695	printf "\n but was also given with option \"-s\" which means that it should be taken"
1696	printf "\n from directory \"$source_path\"."
1697	locat=source; exit
1698	fi
1699
1700	cp $add_source_path/$dateiname .
1701	source_list="$source_list $dateiname"
1702
1703	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1704	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1705	then
1706	printf "\n\n +++ user file \"$dateiname\" "
1707	printf "\n is not listed in Makefile \n"
1708	locat=source; exit
1709	else
1710
1711	# Default User-Interface von der Liste entfernen, falls Datei
1712	# ein User-Interface enthaelt
1713	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1714	# then
1715	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1716	# then
1717	# rm -rf user_interface.f90
1718	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1719	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1720	# printf "\n since a user-interface is found in file"
1721	# printf "\n \"$add_source_path/$dateiname\" \n"
1722	# sleep 3
1723	# else
1724	if [[ $found = false ]]
1725	then
1726	found=true
1727	printf "\n\n *** following user file(s) added to the"
1728	printf " files to be translated:\n "
1729	fi
1730	printf "$dateiname "
1731	sleep 0.5
1732	fi
1733	done
1734	[[ $found = true ]] && printf "\n"
1735	cd - > /dev/null
1736	fi
1737	fi
1738
1739
1740	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1741	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1742	if [[ $restart_run != true && -n $package_list ]]
1743	then
1744
1745	cd $source_path
1746
1747	for package in $package_list
1748	do
1749
1750	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1751
1752	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1753	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1754	# LIEFERT
1755	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1756
1757
1758	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1759	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1760	for source_list_name in $package_source_list
1761	do
1762	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1763	then
1764
1765	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1766	ending=`echo $source_list_name \| cut -f2 -d.`
1767	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1768	then
1769	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1770	source_list="$source_list $source_list_name"
1771	fi
1772	fi
1773	done
1774	done
1775
1776	cd - > /dev/null
1777	fi
1778
1779
1780	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1781	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1782	# if [[ "$restart_run" != true ]]
1783	# then
1784	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1785	# if [[ ! -f $makefile ]]
1786	# then
1787	# printf "\n +++ file \"$makefile\" does not exist"
1788	# locat=make; exit
1789	# else
1790	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1791	# fi
1792	# fi
1793
1794	fi # do_compile=true
1795
1796
1797	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1798	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1799	if [[ $do_compile = true ]]
1800	then
1801
1802	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1803	# ZUSAMMENSETZEN
1804	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1805	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1806	then
1807	cpp_options="${cpp_options},-D__ibm=__ibm"
1808	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1809	then
1810	cpp_options="$cpp_options -D__nec"
1811	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1812	then
1813	cpp_options="$cpp_options -D__lc"
1814	else
1815	cpp_options="$cpp_options -D__$localhost"
1816	fi
1817
1818	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1819	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1820	then
1821	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1822	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1823	else
1824	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1825	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1826	fi
1827
1828	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1829	if [[ -n $package_list ]]
1830	then
1831	for package in $package_list
1832	do
1833	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1834	then
1835	if [[ $package != "dvrp_graphics+1PE" ]]
1836	then
1837	cpp_options="${cpp_options},-D__$package=__$package"
1838	else
1839	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1840	export use_seperate_pe_for_dvrp_output=true
1841	fi
1842	else
1843	if [[ $package != "dvrp_graphics+1PE" ]]
1844	then
1845	cpp_options="$cpp_options -D__$package"
1846	else
1847	cpp_options="$cpp_options -D__dvrp_graphics"
1848	export use_seperate_pe_for_dvrp_output=true
1849	fi
1850	fi
1851	done
1852	fi
1853
1854	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1855	if [[ -n $cpp_opts ]]
1856	then
1857	for popts in $cpp_opts
1858	do
1859	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1860	then
1861	cpp_options="${cpp_options},-D__$popts=__$popts"
1862	else
1863	cpp_options="$cpp_options -D__$popts"
1864	fi
1865	done
1866	fi
1867
1868	else
1869
1870
1871	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1872	if [[ $do_remote = false ]]
1873	then
1874	if [[ ! -f $executable ]]
1875	then
1876	printf "\n +++ executable file: $executable"
1877	printf "\n does not exist"
1878	locat=executable; exit
1879	fi
1880	fi
1881	fi
1882
1883
1884	# JOBMODUS FESTSTELLEN
1885	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1886	then
1887	jobmo=BATCH
1888	else
1889	jobmo=INTERACTIVE
1890	fi
1891
1892
1893	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1894	# DURCH BENUTZER ANDERWEITIG VEREINBART
1895	if [[ "$compiler_name" = "" ]]
1896	then
1897
1898	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1899	locat=compiler_name; exit
1900
1901	fi
1902
1903
1904	# COMPILER AUF NECK UEBERSCHREIBEN
1905	[[ $localhost = neck ]] && compiler_name=mpif90
1906
1907
1908
1909	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1910	kennung=$RANDOM
1911	if [[ "$tmp_user_catalog" = "" ]]
1912	then
1913	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1914	then
1915	tmp_user_catalog=$TMPDIR
1916	elif [[ $localhost = nech ]]
1917	then
1918	tmp_user_catalog=$WRKSHR
1919	else
1920	tmp_user_catalog=/tmp
1921	fi
1922	fi
1923	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1924
1925
1926	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1927	# BESTIMMEN
1928	if [[ "$tmp_data_catalog" = "" ]]
1929	then
1930	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1931	then
1932	tmp_data_catalog=$WORK/mrun_restart_data
1933	elif [[ $localhost = nech ]]
1934	then
1935	tmp_data_catalog=$WRKSHR/mrun_restart_data
1936	else
1937	tmp_data_catalog=/tmp/mrun_restart_data
1938	fi
1939	fi
1940
1941
1942	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1943	# ERSETZEN
1944	if [[ $do_remote = false && $do_compile = true ]]
1945	then
1946	eval fopts=\"$fopts\"
1947	eval lopts=\"$lopts\"
1948	fi
1949
1950
1951
1952	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1953	fopts="$fopts $netcdf_inc $dvrp_inc"
1954	lopts="$lopts $netcdf_lib $dvrp_lib"
1955	ROPTS="$ropts"
1956	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 ) && -n $numprocs ]]
1957	then
1958	XOPT="-X $numprocs"
1959	fi
1960
1961
1962
1963	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1964	# GRAMM BENOETIGT
1965	done=false
1966	while [[ $done = false ]]
1967	do
1968	cputime=$cpumax
1969	if (( $cputime == 0 ))
1970	then
1971	printf "\n +++ cpu-time is undefined"
1972	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1973	printf "\n >>> "
1974	read cputime 1>/dev/null 2>&1
1975	else
1976	done=true
1977	fi
1978	cpumax=$cputime
1979	done
1980
1981	(( minuten = cputime / 60 ))
1982	(( sekunden = cputime - minuten * 60 ))
1983
1984
1985	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1986	if [[ $do_batch = true ]]
1987	then
1988	done=false
1989	while [[ $done = false ]]
1990	do
1991	if (( memory == 0 ))
1992	then
1993	printf "\n +++ memory demand is undefined"
1994	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1995	printf "\n >>> "
1996	read memory 1>/dev/null 2>&1
1997	else
1998	done=true
1999	fi
2000	done
2001	fi
2002
2003
2004	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2005	if [[ $do_remote = true && -z $remote_username ]]
2006	then
2007	while [[ -z $remote_username ]]
2008	do
2009	printf "\n +++ username on remote host \"$host\" is undefined"
2010	printf "\n >>> Please type username:"
2011	printf "\n >>> "
2012	read remote_username
2013	done
2014	mc="$mc -u$remote_username"
2015	fi
2016
2017	###########################################################################
2018	# HEADER-AUSGABE
2019	###########################################################################
2020
2021
2022	calltime=$(date)
2023	printf "\n"
2024	# [[ $silent = false ]] && clear
2025	printf "#--------------------------------------------------------------# \n"
2026	printf "\| $version$calltime \| \n"
2027	printf "\| \| \n"
2028	spalte1="called on:"; spalte2=$localhost_realname
2029	printf "\| $spalte1$spalte2 \| \n"
2030	if [[ $local_compile = false ]]
2031	then
2032	if [[ $do_remote = true ]]
2033	then
2034	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2035	else
2036	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2037	fi
2038	else
2039	spalte1="compiling test only!"; spalte2=""
2040	fi
2041	printf "\| $spalte1$spalte2 \| \n"
2042	if [[ -n $numprocs ]]
2043	then
2044	spalte1="number of PEs:"; spalte2=$numprocs
2045	printf "\| $spalte1$spalte2 \| \n"
2046	fi
2047	if [[ -n $tasks_per_node ]]
2048	then
2049	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2050	printf "\| $spalte1$spalte2 \| \n"
2051	fi
2052	if [[ $threads_per_task != 1 ]]
2053	then
2054	spalte1="threads per task:"; spalte2="$threads_per_task"
2055	printf "\| $spalte1$spalte2 \| \n"
2056	fi
2057	printf "\| \| \n"
2058	if [[ $do_compile = true ]]
2059	then
2060	spalte1=cpp-directives:; spalte2=$cpp_options
2061	printf "\| $spalte1$spalte2 \| \n"
2062	zeile=$(echo "$cpp_options" \| cut -c41-)
2063	while [[ "$zeile" != "" ]]
2064	do
2065	spalte1=""
2066	spalte2=$zeile
2067	printf "\| $spalte1$spalte2 \| \n"
2068	zeile=$(echo "$zeile" \| cut -c41-)
2069	done
2070
2071	spalte1=compiler-options:; spalte2="$fopts"
2072	printf "\| $spalte1$spalte2 \| \n"
2073	zeile=$(echo "$fopts" \| cut -c41-)
2074	while [[ "$zeile" != "" ]]
2075	do
2076	spalte1=""
2077	spalte2=$zeile
2078	printf "\| $spalte1$spalte2 \| \n"
2079	zeile=$(echo "$zeile" \| cut -c41-)
2080	done
2081
2082	spalte1=linker-options:; spalte2=$lopts
2083	printf "\| $spalte1$spalte2 \| \n"
2084	zeile=$(echo "$lopts" \| cut -c41-)
2085	while [[ "$zeile" != "" ]]
2086	do
2087	spalte1=""
2088	spalte2=$zeile
2089	printf "\| $spalte1$spalte2 \| \n"
2090	zeile=$(echo "$zeile" \| cut -c41-)
2091	done
2092
2093	spalte1="main program":; spalte2=$mainprog
2094	printf "\| $spalte1$spalte2 \| \n"
2095	else
2096	spalte1=executable:; spalte2=$executable
2097	printf "\| $spalte1$spalte2 \| \n"
2098	fi
2099	printf "\| \| \n"
2100	spalte1="base name of files":; spalte2=$fname
2101	printf "\| $spalte1$spalte2 \| \n"
2102	if [[ $fname != $afname ]]
2103	then
2104	spalte1="base name of input files":; spalte2=$afname
2105	printf "\| $spalte1$spalte2 \| \n"
2106	fi
2107	spalte1="INPUT control list":; spalte2=$input_list
2108	printf "\| $spalte1$spalte2 \| \n"
2109	spalte1="OUTPUT control list":; spalte2=$output_list
2110	printf "\| $spalte1$spalte2 \| \n"
2111
2112	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2113	then
2114	spalte1="memory demand / PE":; spalte2="$memory MB"
2115	printf "\| $spalte1$spalte2 \| \n"
2116	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2117	printf "\| $spalte1$spalte2 \| \n"
2118	fi
2119
2120	if [[ $do_compile = true ]]
2121	then
2122	printf "\| \| \n"
2123	printf "\| Files to be compiled: \| \n"
2124	zeile=$source_list
2125	while [[ "$zeile" != "" ]]
2126	do
2127	spalte3=$zeile
2128	printf "\| $spalte3 \| \n"
2129	zeile=$(echo "$zeile" \| cut -c61-)
2130	done
2131	fi
2132	printf "#--------------------------------------------------------------#"
2133
2134
2135
2136	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2137	if [[ $do_trace = true ]]
2138	then
2139	(( i = 0 ))
2140	while (( i < iin ))
2141	do
2142	(( i = i + 1 ))
2143	if (( i == 1 ))
2144	then
2145	printf "\n\n >>> INPUT-file assignments:\n"
2146	fi
2147	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2148	done
2149	(( i = 0 ))
2150	while (( i < iout ))
2151	do
2152	(( i = i + 1 ))
2153	if (( i == 1 ))
2154	then
2155	printf "\n\n >>> OUTPUT-file assignments:\n"
2156	fi
2157	printf "\n ${localout[$i]} : ${pathout[$i]}"
2158	done
2159	(( i = 0 ))
2160	while (( i < iic ))
2161	do
2162	(( i = i + 1 ))
2163	if (( i == 1 ))
2164	then
2165	printf "\n\n >>> INPUT-commands:\n"
2166	fi
2167	printf "\n ${in_command[$i]}"
2168	done
2169	(( i = 0 ))
2170	while (( i < ioc ))
2171	do
2172	(( i = i + 1 ))
2173	if (( i == 1 ))
2174	then
2175	printf "\n\n >>> OUTPUT-commands:\n"
2176	fi
2177	printf "\n ${out_command[$i]}"
2178	done
2179	fi
2180
2181
2182	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2183	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2184	then
2185	antwort=dummy
2186	printf "\n\n"
2187	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2188	do
2189	printf " >>> everything o.k. (y/n) ? "
2190	read antwort
2191	done
2192	if [[ $antwort = n \|\| $antwort = N ]]
2193	then
2194	locat=user_abort; (( iec = 0 )); exit
2195	fi
2196	if [[ $do_batch = true ]]
2197	then
2198	printf " >>> batch-job will be created and submitted"
2199	else
2200	if [[ $local_compile = false ]]
2201	then
2202	printf " >>> MRUN will now continue to execute on this machine"
2203	else
2204	printf " >>> a test compilation will now be carried out on this machine"
2205	fi
2206	fi
2207	fi
2208
2209
2210
2211
2212	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2213	# CHENDE AKTIONEN DURCHGEFUEHRT
2214	if [[ $do_batch = false ]]
2215	then
2216
2217
2218	# TEMPORAEREN KATALOG ERZEUGEN
2219	mkdir -p $TEMPDIR
2220	chmod go+rx $TEMPDIR
2221	tmpcreate=true
2222
2223
2224	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2225	# TEMPORAERES VERZEICHNIS KOPIEREN
2226	if [[ $do_compile = true ]]
2227	then
2228
2229	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2230	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2231	if [[ $localhost = nech ]]
2232	then
2233	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2234	if mkdir -p $TEMPDIR_COMPILE
2235	then
2236	printf "\n *** \"$TEMPDIR_COMPILE\" "
2237	printf "\n is generated as temporary directory for cross compiling\n"
2238	else
2239	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2240	printf "\n needed for cross compilation failed"
2241	locat=compile
2242	exit
2243	fi
2244	else
2245	TEMPDIR_COMPILE=$TEMPDIR
2246	fi
2247
2248
2249	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2250	line=""
2251	grep "%depository_path" $config_file > tmp_mrun
2252	while read line
2253	do
2254	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2255	then
2256	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2257	then
2258	global_depository_path=`echo $line \| cut -d" " -s -f2`
2259	fi
2260	fi
2261	done < tmp_mrun
2262
2263	line=""
2264	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2265	while read line
2266	do
2267	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2268	then
2269	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2270	then
2271	local_depository_path=`echo $line \| cut -d" " -s -f2`
2272	fi
2273	fi
2274	done < tmp_mrun
2275
2276	if [[ "$local_depository_path" = "" ]]
2277	then
2278	if [[ "$global_depository_path" != "" ]]
2279	then
2280	local_depository_path=$global_depository_path
2281	else
2282	printf "\n\n +++ no depository path found in configuration file"
2283	printf "\n for local host \"$localhost\" "
2284	printf "\n please set \"\%depository_path\" in configuration file\n"
2285	locat=config_file; exit
2286	fi
2287	fi
2288	eval local_depository_path=$local_depository_path
2289	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2290	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2291
2292
2293	basename=`print $mainprog \| cut -f1 -d"."`
2294	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2295	if [[ ! -f $make_depository ]]
2296	then
2297	printf "\n"
2298	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2299	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2300	else
2301	cp $make_depository $TEMPDIR_COMPILE
2302	cd $TEMPDIR_COMPILE
2303	tar -xf $make_depository > /dev/null 2>&1
2304	cd - > /dev/null
2305	fi
2306
2307	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2308
2309	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2310	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2311	# MAKEFILE EINTRAGEN
2312	# cd $TEMPDIR_COMPILE
2313	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2314	# if [[ "$interface_file" != "" ]]
2315	# then
2316	# interface_file=`echo $interface_file \| cut -d"." -f1`
2317	# mv Makefile Makefile_old
2318	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2319	# fi
2320	# cd - > /dev/null
2321	else
2322	cp $executable ${TEMPDIR}/a.out
2323	fi
2324
2325
2326	# WECHSEL IN TEMPORAEREN KATALOG
2327	cd $TEMPDIR
2328	printf "\n *** changed to temporary directory: $TEMPDIR"
2329
2330
2331	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2332	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2333	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2334	# ERMITTELN
2335	(( i = 0 ))
2336	while (( i < iout ))
2337	do
2338	(( i = i + 1 ))
2339	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2340	then
2341	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2342	else
2343	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2344	fi
2345	done
2346
2347
2348	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2349	if [[ $do_compile = true ]]
2350	then
2351
2352
2353	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2354	printf "\n\n\n *** compilation starts \n$striche\n"
2355	printf " *** compilation with make using following options:\n"
2356	printf " make depository: $make_depository"
2357	printf " compilername: $compiler_name\n"
2358	printf " options: $fopts\n"
2359	printf " preprocessor-directives: $cpp_options \n"
2360	printf " linker-options: $lopts \n"
2361	printf " source code files: $source_list \n"
2362
2363	if [[ $localhost = nech ]]
2364	then
2365	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2366	cp $TEMPDIR_COMPILE/a.out .
2367	[[ $? != 0 ]] && compile_error=true
2368	rm -rf $TEMPDIR_COMPILE
2369	elif [[ $localhost = lcsgib ]]
2370	then
2371	printf " compiler is called via ssh on \"bicegate\" \n"
2372	ssh 130.73.232.102 -l $usern ". /usr/share/modules/init/bash; module load mpt; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2373	[[ ! -f a.out ]] && compile_error=true
2374	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2375	elif [[ $localhost = lcsgih ]]
2376	then
2377	printf " compiler is called via ssh on \"hicegate2\" \n"
2378	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load mpt; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2379	# ssh 130.75.4.102 -l $usern ". /usr/share/modules/init/bash; module load mvapich2; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2380	# print ". /usr/share/modules/init/bash; module load mpt; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" " \| ssh ${usern}@130.75.4.102 2>&1
2381	[[ ! -f a.out ]] && compile_error=true
2382	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2383	else
2384	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2385	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2386	fi
2387
2388	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2389	then
2390	printf "\n +++ error occured while compiling or linking"
2391	locat=compile
2392
2393	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2394	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2395	# then
2396	exit
2397	# else
2398	# locat=normal
2399	# fi
2400	else
2401	printf "$striche\n *** compilation finished \n"
2402	fi
2403	fi
2404
2405
2406	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2407	if [[ $local_compile = true ]]
2408	then
2409	cd $HOME
2410	rm -rf $TEMPDIR
2411	locat=local_compile; exit
2412	fi
2413
2414
2415	# BEREITSTELLEN DER INPUT-DATEIEN
2416	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2417	(( i = 0 ))
2418	while (( i < iin ))
2419	do
2420	(( i = i + 1 ))
2421	if (( i == 1 ))
2422	then
2423	printf "\n\n *** providing INPUT-files:\n$striche"
2424	fi
2425
2426
2427	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2428	if [[ "${transin[$i]}" = unavailable ]]
2429	then
2430	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2431	then
2432	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2433	printf "\n is not available!"
2434	else
2435	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2436	printf "\n is not available!"
2437	fi
2438	continue
2439	fi
2440
2441	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2442	files_for_pes=false; datentyp=file
2443	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2444	then
2445	files_for_pes=true; datentyp=directory
2446	actionin[$i]=""
2447	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2448	then
2449	actionin[$i]=""
2450	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2451	then
2452	files_for_pes=true; datentyp=directory
2453	actionin[$i]="ar"
2454	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2455	then
2456	actionin[$i]="ar"
2457	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2458	then
2459	files_for_pes=true; datentyp=directory
2460	actionin[$i]="fl"
2461	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2462	then
2463	actionin[$i]="fl"
2464	fi
2465
2466	if [[ $files_for_pes = true ]]
2467	then
2468	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2469	else
2470	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2471	fi
2472
2473	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2474	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2475	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2476	# SERVER ZU HOLEN
2477	if [[ "${actionin[$i]}" = fl ]]
2478	then
2479	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2480	if [[ $files_for_pes = false ]]
2481	then
2482	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2483	then
2484	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2485	got_tmp[$i]=true
2486	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2487	then
2488	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2489	printf "\n *** trying to use backup copy in \"$WORK\" "
2490	cp $WORK/${frelin[$i]} ${localin[$i]}
2491	else
2492	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2493	printf "\n or \"$tmp_data_catalog\" does not exist!"
2494	printf "\n *** trying to get copy from archive"
2495	actionin[$i]=ar
2496	fi
2497	else
2498	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2499	then
2500	mkdir ${localin[$i]}
2501	cd $tmp_data_catalog/${frelin[$i]}
2502	for file in $(ls *)
2503	do
2504	ln $file $TEMPDIR/${localin[$i]}
2505	done
2506	cd $TEMPDIR
2507	got_tmp[$i]=true
2508	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2509	then
2510	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2511	printf "\n *** trying to use backup copy in \"$WORK\" "
2512	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2513	else
2514	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2515	printf "\n or \"$tmp_data_catalog\" does not exist!"
2516	printf "\n *** trying to get copy from archive"
2517	actionin[$i]=ar
2518	fi
2519	fi
2520	fi
2521
2522
2523	# DATEI LIEGT AUF ARCHIV-SERVER
2524	if [[ "${actionin[$i]}" = ar ]]
2525	then
2526
2527	if [[ $files_for_pes = false ]]
2528	then
2529	printf "\n file will be restored from archive-system ($archive_system)!"
2530	else
2531	printf "\n directory will be restored from archive-system ($archive_system)!"
2532	fi
2533
2534	file_restored=false
2535
2536	if [[ $archive_system = asterix ]]
2537	then
2538	do_stagein=true
2539	(( stagein_anz = 0 ))
2540	while [[ $do_stagein = true ]]
2541	do
2542	if [[ $files_for_pes = false ]]
2543	then
2544	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2545	else
2546	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2547	fi
2548	cat STAGEIN_OUTPUT
2549	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2550	then
2551	file_restored=true
2552	do_stagein=false
2553	else
2554	(( stagein_anz = stagein_anz + 1 ))
2555	if (( stagein_anz == 10 ))
2556	then
2557	printf "\n +++ stagein stoped after 10 tries"
2558	locat=stage
2559	exit
2560	fi
2561	printf "\n +++ restoring from archive failed, trying again:"
2562	sleep 900
2563	fi
2564	done
2565	elif [[ $archive_system = DMF ]]
2566	then
2567	if [[ $files_for_pes = false ]]
2568	then
2569	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2570	locat=DMF
2571	exit
2572	else
2573	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2574	cp -r $ARCHIVE/${frelin[$i]} $PWD
2575	file_restored=true
2576	fi
2577	elif [[ $archive_system = tivoli ]]
2578	then
2579	if [[ $files_for_pes = false ]]
2580	then
2581	if [[ $localhost = ibmh ]]
2582	then
2583	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2584	else
2585	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2586	fi
2587	else
2588	(( inode = 0 ))
2589	while (( inode < nodes ))
2590	do
2591	if [[ $localhost = ibmh ]]
2592	then
2593	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2594	else
2595	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2596	fi
2597	(( inode = inode + 1 ))
2598	done
2599	fi
2600	file_restored=true
2601	elif [[ $archive_system = ut ]]
2602	then
2603	if [[ $files_for_pes = false ]]
2604	then
2605	cp $UT/${frelin[$i]} .
2606	else
2607	(( inode = 0 ))
2608	while (( inode < nodes ))
2609	do
2610	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2611	(( inode = inode + 1 ))
2612	done
2613	fi
2614	file_restored=true
2615	else
2616	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2617	locat=rearchive
2618	exit
2619	fi
2620
2621	if [[ $file_restored = true ]]
2622	then
2623
2624	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2625	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2626	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2627	if [[ $files_for_pes = false ]]
2628	then
2629	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2630	else
2631	mkdir $tmp_data_catalog/${frelin[$i]}
2632	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2633	fi
2634	got_tmp[$i]=true
2635
2636	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2637	mv ${frelin[$i]} ${localin[$i]}
2638
2639	fi
2640	fi
2641
2642
2643	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2644	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2645	then
2646
2647	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2648	then
2649
2650	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2651	printf "\n file will be provided for $numprocs processors"
2652	mkdir ${localin[$i]}
2653	ival=$numprocs
2654	(( ii = 0 ))
2655	while (( ii <= ival-1 ))
2656	do
2657	if (( ii < 10 ))
2658	then
2659	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2660	elif (( ii < 100 ))
2661	then
2662	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2663	elif (( ii < 1000 ))
2664	then
2665	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2666	else
2667	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2668	fi
2669	(( ii = ii + 1 ))
2670	done
2671
2672	else
2673
2674	if [[ $files_for_pes = true ]]
2675	then
2676
2677	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2678	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2679	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2680	# PER MOVE UMBENANNT WERDEN
2681	printf "\n providing $numprocs files for the respective processors"
2682	mkdir ${localin[$i]}
2683	if [[ $link_local_input = true ]]
2684	then
2685	printf " using ln -f\n"
2686	cd ${absnamein[$i]}
2687	for file in $(ls *)
2688	do
2689	ln -f $file ${localin[$i]}
2690	done
2691	cd $TEMPDIR
2692	fi
2693	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2694	if [[ ! -f "${localin[$i]}/_0000" ]]
2695	then
2696	if [[ $link_local_input = true ]]
2697	then
2698	printf " ln failed for .../_0000, using cp...\n"
2699	fi
2700	cp -r ${absnamein[$i]}/* ${localin[$i]}
2701	fi
2702
2703	else
2704	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2705	if [[ $link_local_input = true ]]
2706	then
2707	printf " using ln -f\n"
2708	ln -f ${absnamein[$i]} ${localin[$i]}
2709	fi
2710	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2711	if [[ ! -f "${localin[$i]}" ]]
2712	then
2713	if [[ $link_local_input = true ]]
2714	then
2715	printf " ln failed, using cp...\n"
2716	fi
2717	cp ${absnamein[$i]} ${localin[$i]}
2718	fi
2719	fi
2720	fi
2721	fi
2722
2723	done
2724	if (( i != 0 ))
2725	then
2726	printf "\n$striche\n *** all INPUT-files provided \n"
2727	fi
2728
2729
2730	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2731	# LESEN VON PALM)
2732	cat > ENVPAR << %%END%%
2733	&envpar run_identifier = '$fname', host = '$localhost',
2734	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2735	maximum_cpu_time_allowed = ${cpumax}.,
2736	revision = '$global_revision' /
2737
2738	%%END%%
2739
2740
2741	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2742	(( i = 0 ))
2743	while (( i < iic ))
2744	do
2745	(( i = i + 1 ))
2746	if (( i == 1 ))
2747	then
2748	printf "\n\n *** execution of INPUT-commands:\n$striche"
2749	fi
2750	printf "\n >>> ${in_command[$i]}"
2751	eval ${in_command[$i]}
2752	if (( i == iic ))
2753	then
2754	printf "\n$striche\n"
2755	fi
2756	done
2757
2758
2759	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2760	cpurest=${cpumax}.
2761
2762
2763	# PROGRAMMSTART
2764	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2765	PATH=$PATH:$TEMPDIR
2766
2767	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2768	then
2769	if [[ "$ENVIRONMENT" = BATCH ]]
2770	then
2771	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2772	then
2773	printf "\n +++ debug is allowed in interactive mode only"
2774	locat=debug
2775	exit
2776	fi
2777	fi
2778	if [[ $localhost = decalpha ]]
2779	then
2780	dxladebug a.out
2781	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2782	then
2783
2784	# SETUP THE IBM MPI ENVIRONMENT
2785	export MP_SHARED_MEMORY=yes
2786	export AIXTHREADS_SCOPE=S
2787	export OMP_NUM_THREADS=$threads_per_task
2788	export AUTHSTATE=files
2789	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2790
2791	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2792	export MP_ADAPTER_USE=shared
2793	export MP_CPU_USE=multiple
2794	export MP_TIMEOUT=1200
2795
2796	unset MP_TASK_AFFINITY
2797
2798	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2799	#(( ii = 1 ))
2800	#while (( ii <= $numprocs ))
2801	#do
2802	# echo $localhost_realname >> hostfile
2803	# (( ii = ii + 1 ))
2804	#done
2805	#export MP_HOSTFILE=hostfile
2806
2807	if [[ "$LOADLBATCH" = yes ]]
2808	then
2809	totalview poe a.out $ROPTS
2810	else
2811	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2812	export TVDSVRLAUNCHCMD=ssh
2813	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2814	fi
2815	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
2816	then
2817	# CURRENTLY NO DEBUGGER ON LCSGI
2818	if [[ $run_coupled_model = true ]]
2819	then
2820	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
2821	locat=debug
2822	exit
2823	fi
2824	(( ii = $numprocs / $threads_per_task ))
2825	export OMP_NUM_THREADS=$threads_per_task
2826	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
2827	if [[ $threads_per_task != 1 ]]
2828	then
2829	printf "\n threads per task: $threads_per_task"
2830	fi
2831	printf "\n\n"
2832	# ulimit -s 300000 # A too large stack size causes problems
2833	# export MV2_NUM_PORTS=2
2834	# export MV2_CPU_MAPPING=0:1:2:3
2835	# mpiexec ./a.out $ROPTS
2836	# export MPI_LAUNCH_TIMEOUT=360
2837	echo "no_coupling" > runfile_atmos
2838	mpiexec_mpt -np $ii ./a.out $ROPTS
2839	else
2840	printf "\n +++ no debug available on \"$localhost\" "
2841	printf "\n or not implemented in mrun so far"
2842	locat=debug
2843	exit
2844	fi
2845	else
2846	if [[ -n $numprocs ]]
2847	then
2848
2849	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2850	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2851	then
2852	# SETUP THE IBM MPI ENVIRONMENT
2853	export MP_SHARED_MEMORY=yes
2854	export AIXTHREAD_SCOPE=S
2855	export OMP_NUM_THREADS=$threads_per_task
2856	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
2857	export AUTHSTATE=files
2858	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2859	# export MP_PRINTENV=yes
2860
2861	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
2862	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
2863	export MP_WAIT_MODE=poll
2864	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
2865	# export MP_EAGER_LIMIT=65535
2866
2867	# # TESTWEISE FUER TURBOMPI (JAN 05)
2868	# export MPJ_MTAB=128
2869	# export MPJ_ALLTOALL=1
2870	# export MPJ_ALLTOALLV=1
2871
2872	if [[ "$LOADLBATCH" = yes ]]
2873	then
2874	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
2875	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
2876	then
2877	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
2878	else
2879	poe ./a.out $ROPTS
2880	fi
2881	else
2882	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
2883	then
2884	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
2885	elif [[ $localhost = ibmy ]]
2886	then
2887	if [[ -f $hostfile ]]
2888	then
2889	cp $hostfile hostfile
2890	else
2891	(( ii = 1 ))
2892	while (( ii <= $numprocs ))
2893	do
2894	echo $localhost_realname >> hostfile
2895	(( ii = ii + 1 ))
2896	done
2897	fi
2898	export MP_HOSTFILE=hostfile
2899	./a.out -procs $tasks_per_node $ROPTS
2900	else
2901	if [[ "$host_file" = "" ]]
2902	then
2903	printf "\n +++ no hostfile given in configuration file"
2904	locat=config_file
2905	exit
2906	else
2907	eval host_file=$host_file
2908	fi
2909	export MP_HOSTFILE=$host_file
2910	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
2911	fi
2912	fi
2913	elif [[ $host = nech \|\| $host = neck ]]
2914	then
2915	(( ii = nodes ))
2916	if [[ $ii = 1 ]]
2917	then
2918	export F_ERRCNT=0 # acceptable number of errors before program is stopped
2919	export MPIPROGINF=YES
2920	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
2921	echo "*** execution on single node with mpirun"
2922	mpirun -np $numprocs ./a.out $ROPTS
2923	else
2924	(( i = 0 ))
2925	while (( i < ii ))
2926	do
2927	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
2928	(( i = i + 1 ))
2929	done
2930
2931	echo "#!/bin/sh" > mpi_exec_shell
2932	echo " " >> mpi_exec_shell
2933	echo "set -u" >> mpi_exec_shell
2934	echo "F_ERRCNT=0" >> mpi_exec_shell
2935	echo "MPIPROGINV=YES" >> mpi_exec_shell
2936	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
2937	echo "cpurest=$cpurest" >> mpi_exec_shell
2938	echo "fname=$fname" >> mpi_exec_shell
2939	echo "localhost=$localhost" >> mpi_exec_shell
2940	echo "return_addres=$return_addres" >> mpi_exec_shell
2941	echo "return_username=$return_username" >> mpi_exec_shell
2942	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
2943	echo "write_binary=$write_binary" >> mpi_exec_shell
2944	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2945	echo " " >> mpi_exec_shell
2946	echo "export F_ERRCNT" >> mpi_exec_shell
2947	echo "export MPIPROGINV" >> mpi_exec_shell
2948	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
2949	echo "export cpurest" >> mpi_exec_shell
2950	echo "export fname" >> mpi_exec_shell
2951	echo "export localhost" >> mpi_exec_shell
2952	echo "export return_addres" >> mpi_exec_shell
2953	echo "export return_username" >> mpi_exec_shell
2954	echo "export tasks_per_node" >> mpi_exec_shell
2955	echo "export write_binary" >> mpi_exec_shell
2956	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2957	echo " " >> mpi_exec_shell
2958	echo "exec ./a.out" >> mpi_exec_shell
2959
2960	chmod u+x mpi_exec_shell
2961	export MPIPROGINF=YES
2962	mpirun -f multinode_config &
2963	wait
2964
2965	fi
2966	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
2967	then
2968
2969	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
2970	# DOES NOT EXIST
2971	if [[ $host != lcsgih && $host != lcsgib ]]
2972	then
2973	if [[ -f $hostfile ]]
2974	then
2975	cp $hostfile hostfile
2976	else
2977	(( ii = 1 ))
2978	while (( ii <= $numprocs / $threads_per_task ))
2979	do
2980	echo $localhost_realname >> hostfile
2981	(( ii = ii + 1 ))
2982	done
2983	fi
2984	eval zeile=\"`head -n $ii hostfile`\"
2985	printf "\n *** running on: $zeile"
2986	fi
2987
2988	(( ii = $numprocs / $threads_per_task ))
2989	export OMP_NUM_THREADS=$threads_per_task
2990	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
2991	if [[ $threads_per_task != 1 ]]
2992	then
2993	printf "\n threads per task: $threads_per_task"
2994	fi
2995	if [[ $run_coupled_model = false ]]
2996	then
2997	printf "\n\n"
2998	if [[ $host = lcsgih \|\| $host = lcsgib ]]
2999	then
3000	# ulimit -s 300000 # A too large stack size causes problems
3001	# export MV2_NUM_PORTS=2
3002	# export MV2_CPU_MAPPING=0:1:2:3
3003	# mpiexec ./a.out $ROPTS
3004	# export MPI_LAUNCH_TIMEOUT=360
3005	mpiexec_mpt -np $ii ./a.out $ROPTS
3006	elif [[ $host = lcxt4 ]]
3007	then
3008	aprun -n $ii -N $tasks_per_node a.out $ROPTS
3009	else
3010	echo "no_coupling" > runfile_atmos
3011	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3012	fi
3013	else
3014
3015	# currently there is no full MPI-2 support on ICE and XT4
3016	(( iia = $numprocs_atmos / $threads_per_task ))
3017	(( iio = $numprocs_ocean / $threads_per_task ))
3018	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3019	printf "\n using $coupled_mode coupling"
3020	printf "\n\n"
3021
3022	if [[ $coupled_mode = "mpi2" ]]
3023	then
3024	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3025	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3026	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3027	then
3028
3029	mpiexec_mpt -np $iia ./palm $ROPTS < runfile_atmos &
3030	mpiexec_mpt -np $iio ./palm $ROPTS < runfile_ocean &
3031
3032	elif [[ $host = lcxt4 ]]
3033	then
3034
3035	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3036	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3037
3038	else
3039	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3040	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3041	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3042	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3043	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3044	fi
3045	wait
3046
3047	else
3048
3049	echo "coupled_run $iia $iio" > runfile_atmos
3050	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3051	then
3052
3053	mpiexec_mpt -np $ii a.out $ROPTS < runfile_atmos
3054
3055	elif [[ $host = lcxt4 ]]
3056	then
3057
3058	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3059
3060	fi
3061	wait
3062	fi
3063
3064	# if [[ $scirocco = true ]]
3065	# then
3066	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
3067	# else
3068	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
3069	# fi
3070	fi
3071	elif [[ $host = decalpha ]]
3072	then
3073	dmpirun -np $numprocs a.out $ROPTS
3074	elif [[ $host = lctit ]]
3075	then
3076	export runfile=runfile.$kennung
3077
3078	echo "cd $PWD" > $runfile
3079	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
3080	echo "export cpurest=$cpurest" >> $runfile
3081	echo "export fname=$fname" >> $runfile
3082	echo "export localhost=$localhost" >> $runfile
3083	echo "export return_addres=$return_addres" >> $runfile
3084	echo "export return_username=$return_username" >> $runfile
3085	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3086	echo "export write_binary=$write_binary" >> $runfile
3087	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3088	echo "./a.out" >> $runfile
3089	chmod u+x $runfile
3090
3091	if [[ "$QUEUE" = interactive ]]
3092	then
3093	mpirun -np $numprocs a.out $ROPTS
3094	else
3095	(( mem_tsubame = $memory / 1024.0 ))
3096	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3097	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3098	/n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3099	fi
3100
3101	rm $runfile
3102	else
3103	mpprun -n $numprocs a.out $ROPTS
3104	fi
3105	[[ $? != 0 ]] && execution_error=true
3106
3107
3108	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3109	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3110	then
3111	apprentice
3112	fi
3113	else
3114	a.out $ROPTS
3115	fi
3116	fi
3117	if [[ $? != 0 \|\| $execution_error = true ]]
3118	then
3119
3120	# ABBRUCH BEI LAUFZEITFEHLER
3121	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3122	printf "\n +++ runtime error occured"
3123	locat=execution
3124	exit
3125	else
3126	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3127	printf "\n$striche\n *** execution finished \n"
3128	fi
3129
3130
3131
3132	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3133	(( i = 0 ))
3134	while (( i < ioc ))
3135	do
3136	(( i = i + 1 ))
3137	if (( i == 1 ))
3138	then
3139	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3140	fi
3141	printf "\n >>> ${out_command[$i]}"
3142	eval ${out_command[$i]}
3143	if (( i == ioc ))
3144	then
3145	printf "\n$striche\n"
3146	fi
3147	done
3148
3149
3150	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3151	if [[ $do_trace = true ]]
3152	then
3153	printf "\n\n"
3154	ls -al
3155	fi
3156
3157
3158
3159	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3160	(( i = 0 ))
3161	while (( i < iout ))
3162	do
3163	(( i = i + 1 ))
3164	if (( i == 1 ))
3165	then
3166	printf "\n\n *** saving OUTPUT-files:\n$striche"
3167	fi
3168
3169	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3170	files_for_pes=false; filetyp=file
3171	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3172	then
3173	files_for_pes=true; filetyp=directory
3174	actionout[$i]=""
3175	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3176	then
3177	actionout[$i]=""
3178	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3179	then
3180	files_for_pes=true; filetyp=directory
3181	actionout[$i]="ar"
3182	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3183	then
3184	actionout[$i]="ar"
3185	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3186	then
3187	files_for_pes=true; filetyp=directory
3188	actionout[$i]="fl"
3189	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3190	then
3191	actionout[$i]="fl"
3192	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3193	then
3194	files_for_pes=true; filetyp=directory
3195	actionout[$i]="tr"
3196	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3197	then
3198	actionout[$i]="tr"
3199	fi
3200
3201	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3202	then
3203	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3204	elif [[ ! -f ${localout[$i]}/_0000 && $files_for_pes = true ]]
3205	then
3206	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3207	else
3208
3209
3210	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3211	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3212	# REMOTE-RECHNUNGEN
3213	if [[ "${actionout[$i]}" = tr ]]
3214	then
3215	if [[ $localhost != $fromhost ]]
3216	then
3217	if [[ $files_for_pes = false ]]
3218	then
3219	cps=""
3220	cst=""
3221	else
3222	cps=-c
3223	cst="/"
3224	fi
3225	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3226	then
3227
3228	# TRANSFER IN EIGENSTAENDIGEM JOB
3229	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3230	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3231	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3232	if [[ $files_for_pes = false ]]
3233	then
3234	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3235	else
3236	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3237	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3238	fi
3239
3240	echo "set -x" > transfer_${localout[$i]}
3241	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3242
3243	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3244	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3245	printf "\n or higher cycle\n"
3246	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3247
3248	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3249
3250	if [[ $localhost = nech ]]
3251	then
3252	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3253	else
3254	if [[ "$LOGNAME" = b323013 ]]
3255	then
3256	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3257	else
3258	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3259	fi
3260	fi
3261
3262	else
3263
3264	# TRANSFER INNERHALB DIESES JOBS
3265	transfer_failed=false
3266	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3267	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3268	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3269	[[ $? != 0 ]] && transfer_failed=true
3270
3271	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3272	# LOKALER MASCHINE ANLEGEN
3273	if [[ $transfer_failed = true ]]
3274	then
3275	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3276	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3277
3278	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3279	# ANLEGEN.
3280	eval local_catalog=${pathout[$i]}
3281	if [[ ! -d $local_catalog ]]
3282	then
3283	printf " *** local directory does not exist. Trying to create:\n"
3284	printf " $local_catalog \n"
3285	mkdir -p $local_catalog
3286	fi
3287	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3288	transfer_problems=true
3289	fi
3290	fi
3291	else
3292
3293	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3294	actionout[$i]=""
3295	fi
3296	fi
3297
3298
3299	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3300	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3301	# REMOTE-RECHNUNGEN
3302	if [[ "${actionout[$i]}" = tra ]]
3303	then
3304	if [[ $localhost != $fromhost ]]
3305	then
3306	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3307	then
3308
3309	# TRANSFER IN EIGENSTAENDIGEM JOB
3310	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3311	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3312	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3313	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3314
3315	echo "set -x" > transfer_${localout[$i]}
3316	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3317
3318	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3319	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3320	printf "\n or higher cycle\n"
3321	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3322
3323	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3324
3325	if [[ $localhost = nech ]]
3326	then
3327	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3328	else
3329	if [[ $LOGNAME = b323013 ]]
3330	then
3331	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3332	else
3333	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3334	fi
3335	fi
3336
3337	else
3338
3339	# TRANSFER INNERHALB DIESES JOBS
3340	transfer_failed=false
3341	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3342	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3343	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3344	[[ $? != 0 ]] && transfer_failed=true
3345
3346	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3347	# LOKALER MASCHINE ANLEGEN
3348	if [[ $transfer_failed = true ]]
3349	then
3350	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3351	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3352
3353	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3354	# ANLEGEN
3355	eval local_catalog=${pathout[$i]}
3356	if [[ ! -d $local_catalog ]]
3357	then
3358	printf " *** local directory does not exist. Trying to create:\n"
3359	printf " $local_catalog \n"
3360	mkdir -p $local_catalog
3361	fi
3362
3363	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3364	transfer_problems=true
3365	fi
3366	fi
3367	else
3368
3369	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3370	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3371	actionout[$i]=a
3372	fi
3373	fi
3374
3375
3376	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3377	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3378	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3379	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3380	if [[ "${actionout[$i]}" = fl ]]
3381	then
3382	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3383	chmod g+rx $tmp_data_catalog
3384	if [[ $files_for_pes = false ]]
3385	then
3386	printf "\n >>> OUTPUT: ${localout[$i]} to"
3387	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3388	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3389	else
3390	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3391	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3392	mkdir $tmp_data_catalog/${frelout[$i]}
3393	cd ${localout[$i]}
3394	for file in $(ls *)
3395	do
3396	ln -f $file $tmp_data_catalog/${frelout[$i]}
3397	done
3398	cd $TEMPDIR
3399	fi
3400
3401
3402	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3403	if [[ $store_on_archive_system = true ]]
3404	then
3405
3406	if [[ $archive_system = asterix ]]
3407	then
3408	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3409	if [[ $files_for_pes = false ]]
3410	then
3411	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3412	else
3413	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3414	fi
3415	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3416	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3417	echo "then" >> archive_${frelout[$i]}
3418	echo " do_stageout=false" >> archive_${frelout[$i]}
3419	echo "else" >> archive_${frelout[$i]}
3420	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3421	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3422	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3423	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3424	if [[ $files_for_pes = false ]]
3425	then
3426	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3427	else
3428	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3429	fi
3430	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3431	echo "fi" >> archive_${frelout[$i]}
3432	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3433	elif [[ $archive_system = DMF ]]
3434	then
3435	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3436	if [[ $files_for_pes = false ]]
3437	then
3438	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3439	locat=DMF
3440	exit
3441	else
3442	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3443	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3444	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3445	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3446	fi
3447	elif [[ $archive_system = tivoli ]]
3448	then
3449	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3450	if [[ $files_for_pes = false ]]
3451	then
3452	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3453	echo "set -x" >> archive_${frelout[$i]}
3454	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3455	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3456	else
3457
3458	echo "set -x" >> archive_${frelout[$i]}
3459	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3460	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3461	cd $tmp_data_catalog
3462	all_files=`ls -1 ${frelout[$i]}/*`
3463	cd - > /dev/null
3464	(( inode = 0 ))
3465	(( tp1 = tasks_per_node + 1 ))
3466	while (( inode < nodes ))
3467	do
3468	# echo "*** all_files = \"$all_files\" "
3469	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3470	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3471	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3472	# echo "*** files = \"$files\" "
3473	# echo "*** all_files = \"$all_files\" "
3474	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3475	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3476	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3477	(( inode = inode + 1 ))
3478	done
3479	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3480	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3481	fi
3482	elif [[ $archive_system = ut ]]
3483	then
3484	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3485	if [[ $files_for_pes = false ]]
3486	then
3487	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3488	echo "set -x" >> archive_${frelout[$i]}
3489	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3490	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3491	else
3492
3493	echo "set -x" >> archive_${frelout[$i]}
3494	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3495	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3496	cd $tmp_data_catalog
3497	all_files=`ls -1 ${frelout[$i]}/*`
3498	cd - > /dev/null
3499	(( inode = 0 ))
3500	(( tp1 = tasks_per_node + 1 ))
3501	while (( inode < nodes ))
3502	do
3503	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3504	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3505	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3506	(( inode = inode + 1 ))
3507	done
3508	fi
3509	elif [[ $archive_system = none ]]
3510	then
3511	printf " +++ archiving on $localhost not available!\n"
3512	fi
3513
3514	if [[ $archive_system != none ]]
3515	then
3516	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
3517	then
3518	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3519	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3520	elif [[ $localhost = nech ]]
3521	then
3522	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3523	fi
3524	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3525	fi
3526	else
3527	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
3528	fi
3529
3530
3531	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3532	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3533	if [[ $files_for_pes = false ]]
3534	then
3535	cat /dev/null > ${pathout[$i]}
3536	else
3537	mkdir -p ${pathout[$i]}
3538	fi
3539
3540	fi
3541
3542
3543	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3544	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3545	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3546	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3547	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3548	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3549	if [[ "${actionout[$i]}" = ar ]]
3550	then
3551	if [[ $files_for_pes = false ]]
3552	then
3553	printf "\n >>> OUTPUT: ${localout[$i]} to"
3554	printf "\n ${pathout[$i]}"
3555	printf "\n File will be copied to archive-system ($archive_system) !\n"
3556	else
3557	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3558	printf "\n ${pathout[$i]}"
3559	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3560	fi
3561	mv ${localout[$i]} ${frelout[$i]}
3562
3563	file_saved=false
3564
3565	if [[ $archive_system = asterix ]]
3566	then
3567	do_stageout=true
3568	(( stageout_anz = 0 ))
3569	while [[ $do_stageout = true ]]
3570	do
3571	if [[ $files_for_pes = false ]]
3572	then
3573	stageout ${frelout[$i]} > STAGE_OUTPUT
3574	else
3575	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3576	fi
3577	cat STAGE_OUTPUT
3578	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3579	then
3580	file_saved=true
3581	do_stageout=false
3582	else
3583	if [[ $files_for_pes = false ]]
3584	then
3585	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3586	else
3587	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3588	fi
3589	(( stageout_anz = stageout_anz + 1 ))
3590	if (( stageout_anz == 10 ))
3591	then
3592	printf "\n +++ stoped after 10 unsuccessful tries!"
3593	archive_save=false
3594	do_stageout=false
3595	else
3596	printf "\n *** new try to store on archive after 15 min:"
3597	sleep 900
3598	fi
3599	fi
3600	done
3601	elif [[ $archive_system = DMF ]]
3602	then
3603	if [[ $files_for_pes = false ]]
3604	then
3605	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3606	locat=DMF
3607	exit
3608	else
3609	rm -rf $ARCHIVE/${frelout[$i]}
3610	cp -r ${frelout[$i]} $ARCHIVE
3611	fi
3612	file_saved=true
3613	elif [[ $archive_system = tivoli ]]
3614	then
3615	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3616	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3617	# GELEGT WERDEN
3618	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3619	chmod g+rx $tmp_data_catalog
3620	if [[ $files_for_pes = false ]]
3621	then
3622	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3623	else
3624	mkdir $tmp_data_catalog/${frelout[$i]}
3625	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3626	fi
3627
3628	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3629	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3630	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3631	if [[ $files_for_pes = false ]]
3632	then
3633	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3634	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3635	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3636	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3637	else
3638	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3639	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3640	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3641	fi
3642
3643	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3644	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3645	file_saved=true
3646
3647	elif [[ $archive_system = ut ]]
3648	then
3649	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3650	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3651	# GELEGT WERDEN
3652	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3653	chmod g+rx $tmp_data_catalog
3654	if [[ $files_for_pes = false ]]
3655	then
3656	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3657	else
3658	mkdir $tmp_data_catalog/${frelout[$i]}
3659	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3660	fi
3661
3662	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3663	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3664	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3665	if [[ $files_for_pes = false ]]
3666	then
3667	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3668	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3669	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3670	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3671	else
3672	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3673	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3674	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3675	fi
3676
3677	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3678	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3679	file_saved=true
3680
3681	else
3682	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3683	archive_save=false
3684	fi
3685	if [[ $file_saved = true ]]
3686	then
3687	if [[ $files_for_pes = false ]]
3688	then
3689	cat /dev/null > ${pathout[$i]}
3690	else
3691	mkdir -p ${pathout[$i]}
3692	fi
3693	fi
3694	fi
3695
3696	# APPEND AUF LOKALER MASCHINE
3697	if [[ "${actionout[$i]}" = "a" ]]
3698	then
3699	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3700	cat ${localout[$i]} >> ${pathout[$i]}
3701	fi
3702
3703	# KOPIEREN AUF LOKALER MASCHINE
3704	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3705	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3706	then
3707
3708	# KOPIEREN AUF EINPROZESSORMASCHINE
3709	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3710	then
3711	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3712	if [[ $link_local_output = true ]]
3713	then
3714	printf " using ln -f\n"
3715	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3716	fi
3717	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3718	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
3719	then
3720	if [[ $link_local_output = true ]]
3721	then
3722	printf " ln failed, using cp...\n"
3723	fi
3724	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3725	fi
3726	else
3727	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
3728	if [[ $link_local_output = true ]]
3729	then
3730	printf " using ln -f\n"
3731	ln -f ${localout[$i]} ${pathout[$i]}
3732	fi
3733	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3734	if [[ ! -f "${pathout[$i]}" ]]
3735	then
3736	if [[ $link_local_output = true ]]
3737	then
3738	printf " ln failed, using cp...\n"
3739	fi
3740	cp ${localout[$i]} ${pathout[$i]}
3741	fi
3742	fi
3743
3744	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
3745	then
3746
3747	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3748	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
3749	# WIRD DANN KOPIERT
3750	# PER MOVE UMBENANNT WERDEN
3751	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
3752	if [[ $link_local_output = true ]]
3753	then
3754	printf " using ln -f\n"
3755	mkdir ${pathout[$i]}
3756	cd ${localout[$i]}
3757	for file in $(ls *)
3758	do
3759	ln -f $file ${pathout[$i]}
3760	done
3761	cd $TEMPDIR
3762	fi
3763	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
3764	if [[ ! -f "${pathout[$i]}/_0000" ]]
3765	then
3766	if [[ $link_local_output = true ]]
3767	then
3768	printf " ln failed for .../_0000, using cp...\n"
3769	fi
3770	cp -r ${localout[$i]} ${pathout[$i]}
3771	fi
3772
3773	fi
3774	fi
3775	done
3776	if (( i != 0 ))
3777	then
3778	if [[ $transfer_problems = true ]]
3779	then
3780	printf "\n$striche\n *** OUTPUT-files saved"
3781	printf "\n +++ WARNING: some data transfers failed! \n"
3782	else
3783	printf "\n$striche\n *** all OUTPUT-files saved \n"
3784	fi
3785	fi
3786
3787
3788	# EVENTUELL FOLGEJOB STARTEN
3789	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
3790	if [[ -f CONTINUE_RUN ]]
3791	then
3792
3793	if [[ $archive_save = true ]]
3794	then
3795
3796	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
3797	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
3798	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
3799	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
3800	# HANDEN
3801	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
3802	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
3803	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
3804	if [[ $(echo $mc \| grep -c "#") != 0 ]]
3805	then
3806	mc=`echo $mc \| sed 's/#/f/g'`
3807	fi
3808
3809
3810	# JOB STARTEN
3811	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
3812	echo " $mc"
3813	printf "\n$striche\n"
3814	if [[ $localhost != $fromhost ]]
3815	then
3816
3817	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
3818	then
3819	echo "*** ssh will be used to initiate restart-runs!"
3820	echo " return_addres=\"$return_addres\" "
3821	echo " return_username=\"$return_username\" "
3822	if [[ $return_addres = 172.20.25.41 ]]
3823	then
3824	# WORKAROUND AUF SCIROCCO AM TIT
3825	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
3826	else
3827	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3828	fi
3829	else
3830	printf "\n +++ no restart mechanism available for host \"$localhost\" "
3831	locat=restart; exit
3832	fi
3833
3834	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
3835	# DER AKTUELLE JOB ENDET
3836	sleep 30
3837
3838	else
3839
3840	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
3841	# RUFEN WERDEN, AUSSER AUF lcfimm
3842	cd $LOCAL_PWD
3843	if [[ $localhost = lcfimm ]]
3844	then
3845	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3846	else
3847	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
3848	fi
3849	cd - > /dev/null
3850	fi
3851	printf "\n$striche\n *** restart-run initiated \n"
3852
3853
3854	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
3855	# GEHOLT WORDEN SIND, LOESCHEN
3856	(( i = 0 ))
3857	while (( i < iin ))
3858	do
3859	(( i = i + 1 ))
3860	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
3861	then
3862	rm -r $tmp_data_catalog/${frelin[$i]}
3863	fi
3864	done
3865
3866	else
3867
3868	printf "\n +++ no restart-run possible, since errors occured"
3869	printf "\n during the archive process"
3870	fi
3871
3872	fi
3873
3874
3875
3876	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
3877	if [[ "$email_notification" != "" ]]
3878	then
3879
3880	if [[ $localhost != $fromhost ]]
3881	then
3882	if [[ -f CONTINUE_RUN ]]
3883	then
3884	echo "PALM restart run necessary" > email_text
3885	echo "description header of actual run:" >> email_text
3886	cat CONTINUE_RUN >> email_text
3887	echo "mrun-command to restart:" >> email_text
3888	echo "$mc" >> email_text
3889	else
3890	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
3891	fi
3892	mail $email_notification < email_text
3893	printf "\n *** email notification sent to \"$email_notification\" "
3894	fi
3895	fi
3896
3897
3898
3899	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
3900	cd $HOME
3901	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
3902
3903	else
3904
3905
3906	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
3907	# CHENDE AKTIONEN DURCHGEFUEHRT
3908
3909	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
3910	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
3911	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
3912	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
3913	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
3914	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
3915	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
3916	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
3917	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
3918	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
3919	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
3920	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
3921	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
3922	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
3923	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
3924	if [[ $use_openmp = true ]]
3925	then
3926	mrun_com=${mrun_com}" -O"
3927	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
3928	else
3929	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
3930	fi
3931	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
3932	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
3933	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
3934	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
3935	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
3936	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
3937	if [[ $do_remote = true ]]
3938	then
3939	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
3940	fi
3941
3942
3943	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
3944	jobfile=jobfile.$RANDOM
3945
3946
3947	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
3948	echo "mkdir $TEMPDIR" >> $jobfile
3949	echo "cd $TEMPDIR" >> $jobfile
3950
3951
3952	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
3953	if [[ $do_trace = true ]]
3954	then
3955	echo "set -x" >> $jobfile
3956	else
3957	echo "set +vx" >> $jobfile
3958	fi
3959
3960
3961	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
3962	# DATEI FUER DEN JOB
3963	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
3964	then
3965
3966	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
3967	# KOPIEREN
3968	if [[ $restart_run != true ]]
3969	then
3970	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
3971	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
3972	fi
3973
3974	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
3975	echo "set -x" >> $jobfile
3976	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
3977	echo "export SOURCES_COMPLETE=true" >> $jobfile
3978
3979	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
3980	# ARBEITSVERZEICHNIS VERSCHIEBEN
3981	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
3982	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
3983	echo "execute_mrun=true" >> $jobfile
3984	echo " " >> $jobfile
3985
3986	else
3987
3988	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
3989	# SOWIE GEGEBENENFALLS DES MAKEFILES
3990	if [[ $do_compile = true ]]
3991	then
3992
3993	source_catalog=SOURCES_FOR_RUN_$fname
3994
3995	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
3996	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
3997	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
3998	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
3999	echo "export SOURCES_COMPLETE=true" >> $jobfile
4000	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4001
4002	for filename in $source_list
4003	do
4004	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4005	echo "cat > $filename << \"%END%\"" >> $jobfile
4006	cat $source_catalog/$filename >> $jobfile
4007	echo " " >> $jobfile
4008	echo "%END%" >> $jobfile
4009	echo " " >> $jobfile
4010	done
4011
4012	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4013	echo "cat > Makefile << \"%END%\"" >> $jobfile
4014	cat $source_catalog/Makefile >> $jobfile
4015	echo " " >> $jobfile
4016	echo "%END%" >> $jobfile
4017	echo " " >> $jobfile
4018
4019	echo "cd - > /dev/null" >> $jobfile
4020
4021	fi
4022
4023
4024	# ABSPEICHERN DER KONFIGURATIONSDATEI
4025	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4026	echo "cat > $config_file << \"%END%\"" >> $jobfile
4027	cat $config_file >> $jobfile
4028	echo "%END%" >> $jobfile
4029	echo " " >> $jobfile
4030
4031
4032	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4033	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4034	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4035	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4036	echo "%END%" >> $jobfile
4037	if [[ $host = lctit ]]
4038	then
4039	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
4040	echo "mv mrun_new $mrun_script_name" >> $jobfile
4041	fi
4042	echo "chmod u+x $mrun_script_name" >> $jobfile
4043	echo "execute_mrun=true" >> $jobfile
4044	echo " " >> $jobfile
4045
4046	fi
4047
4048
4049	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4050	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4051	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4052	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4053	if [[ $do_remote = true ]]
4054	then
4055	(( i = 0 ))
4056	while (( i < iin ))
4057	do
4058	(( i = i + 1 ))
4059	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4060	if [[ "${transin[$i]}" = job ]]
4061	then
4062	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4063	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4064	echo " " >> $jobfile
4065	echo "%END%" >> $jobfile
4066	else
4067	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4068	fi
4069
4070	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4071	echo "if [[ \$? = 1 ]]" >> $jobfile
4072	echo "then" >> $jobfile
4073	echo " echo \" \" " >> $jobfile
4074	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4075	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4076	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4077	echo " execute_mrun=false" >> $jobfile
4078	echo "fi" >> $jobfile
4079	done
4080	fi
4081
4082	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4083	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4084	echo "LOCAL_PWD=$working_directory" >> $jobfile
4085	echo "export LOCAL_PWD" >> $jobfile
4086
4087	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4088	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4089	echo "export LOCAL_MRUN_PATH" >> $jobfile
4090
4091	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4092	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4093	then
4094	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4095	fi
4096
4097	# MRUN AUF ZIELRECHNER AUFRUFEN
4098	echo "set -x" >> $jobfile
4099	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4100
4101	echo 'ls -al; echo `pwd`' >> $jobfile
4102	echo "cd \$HOME" >> $jobfile
4103	echo "rm -rf $TEMPDIR" >> $jobfile
4104
4105
4106
4107
4108	# JOB PER SUBJOB STARTEN
4109	if [[ $silent = false ]]
4110	then
4111	printf "\n "
4112	else
4113	printf "\n\n"
4114	fi
4115
4116	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog $jobfile
4117	rm -rf $jobfile
4118
4119
4120	fi # ENDE REMOTE-TEIL
4121
4122
4123
4124	# ENDE DER PROZEDUR

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