Home

Context Navigation

source: palm/trunk/SCRIPTS/subjob @ 1547

Last change on this file since 1547 was 1547, checked in by witha, 10 years ago
adjustments for ForWind? computing cluster (lcflow)
Property svn:keywords set to `Id Rev`
File size: 52.3 KB

Rev	Line
[1]	1	#!/bin/ksh
[1090]	2
	3	# subjob - script for automatic generation and submission of batch-job files
	4	# for various batch queuing systems
	5
[1046]	6	#--------------------------------------------------------------------------------#
	7	# This file is part of PALM.
	8	#
	9	# PALM is free software: you can redistribute it and/or modify it under the terms
	10	# of the GNU General Public License as published by the Free Software Foundation,
	11	# either version 3 of the License, or (at your option) any later version.
	12	#
	13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	16	#
	17	# You should have received a copy of the GNU General Public License along with
	18	# PALM. If not, see <http://www.gnu.org/licenses/>.
	19	#
[1310]	20	# Copyright 1997-2014 Leibniz Universitaet Hannover
[1046]	21	#--------------------------------------------------------------------------------#
	22	#
	23	# Current revisions:
[1090]	24	# ------------------
[1547]	25	# adjustments for ForWind computing cluster (lcflow)
[1351]	26	#
[1046]	27	# Former revisions:
	28	# -----------------
[169]	29	# $Id: subjob 1547 2015-01-29 15:09:12Z witha $
[1200]	30	#
[1546]	31	# 1545 2015-01-29 06:52:23Z heinze
	32	# local host name for blizzard further specified
	33	#
[1481]	34	# 1480 2014-10-17 14:41:49Z raasch
	35	# adjustments for 2nd stage of HLRNIII
	36	#
[1469]	37	# 1468 2014-09-24 14:06:57Z maronga
	38	# Typo removed (addres->address)
	39	# Adjustments for lcxe6
	40	#
[1453]	41	# 1452 2014-08-22 09:41:06Z heinze
	42	# local hosts for blizzard added
	43	#
[1451]	44	# 1450 2014-08-21 07:31:51Z heinze
	45	# HLRN-III (lccrayb): testq queue adjusted to mpp1testq
	46	#
[1443]	47	# 1442 2014-07-28 07:09:10Z raasch
	48	# HLRN-III (lccrayb/lccrayh) queues adjusted
	49	#
[1379]	50	# 1378 2014-04-28 06:04:58Z raasch
	51	# -et option added for lctit
	52	#
[1351]	53	# 1350 2014-04-04 13:01:30Z maronga
	54	# location of qsub updated for lcxe6
	55	#
[1290]	56	# 1289 2014-03-04 07:12:34Z raasch
	57	# German comments translated to English
	58	# fimm-, necriam-, scirocco-, ibmy-, and sgi-specific code removed
	59	#
[1280]	60	# 1279 2014-01-28 12:10:14Z raasch
	61	# node calculation modified due to changes in mrun (tasks_per_node must not be
	62	# an integral divisor of numprocs any more)
	63	#
[1275]	64	# 1274 2014-01-09 13:14:54Z heinze
	65	# adjustments for lccrayh
	66	#
[1267]	67	# 1266 2013-12-11 12:07:34Z heinze
	68	# further adjustments for lccrayb (use msub instead of qsub)
	69	#
[1265]	70	# 1264 2013-12-09 12:46:09Z fricke
	71	# Bugfix: Using number of nodes instead of number of processors (lccrayb)
	72	#
[1263]	73	# 1262 2013-12-09 10:57:20Z fricke
	74	# further adjustments for lccrayb
	75	#
[1261]	76	# 1260 2013-12-04 12:48:04Z raasch
	77	# jaboticaba admitted
	78	#
[1256]	79	# 1255 2013-11-07 14:43:35Z raasch
	80	# further adjustments for lccrayb
	81	#
[1225]	82	# 1224 2013-09-16 07:27:23Z raasch
	83	# first adjustments for lccrayb
	84	#
[1203]	85	# 1202 2013-07-10 16:22:07Z witha
	86	# adjustments for Forwind cluster (lcflow)
	87	#
[1200]	88	# 1199 2013-07-05 14:52:22Z raasch
	89	# adjustments for CSC Helsinki (lccrayf)
	90	#
[1185]	91	# use of cluster/express queue enabled (ibmh)
	92	# vinessa added (imuk)
[1047]	93	#
[1104]	94	# 1103 2013-02-20 02:15:53Z raasch
	95	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
	96	# instead typeset -L/R),
	97	# further adjustments for lckyuh
	98	#
[1100]	99	# 2013-02-10 01:47:43Z raasch
	100	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
	101	# and for Forwind cluster (lcflow)
	102	#
[1096]	103	# 1094 2013-02-03 01:52:12Z raasch
	104	# new option -P for explicit setting of ssh/scp port,
	105	# decalpha parts (yonsei) removed
	106	#
[1091]	107	# 2013-02-02 07:06:13Z raasch
[1099]	108	# adjustments for Kyushu-University computing center (lckyut - tatara)
[1091]	109	# old changelog messages removed
	110	#
[1047]	111	# 1046 2012-11-09 14:38:45Z maronga
	112	# code put under GPL (PALM 3.9)
	113	#
[1090]	114	# 08/07/94 - Siggi - first version finished
	115	# 29/06/94 - Siggi - script development started
	116	#--------------------------------------------------------------------------------#
	117	# subjob - script for automatic generation and submission of batch-job files
	118	# for various batch queuing systems
	119	#--------------------------------------------------------------------------------#
[1]	120
	121
[1289]	122	# VARIABLE-DECLARATIONS AND DEFAULT VALUES
[352]	123	delete_dayfile=false
[799]	124	email_notification=none
[122]	125	group_number=none
[1]	126	locat=normal
	127	no_default_queue=none
	128	no_submit=false
	129	job_catalog="~/job_queue"
	130	job_name=none
	131	local_user=$LOGNAME
	132	node_usage=shared
[475]	133	numprocs=0
[1]	134	punkte="..........................................................."
	135	submcom=qsub
	136	queue=default
	137	remote_host=none
	138	remote_user=""
	139	verify=true
	140
	141	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
[696]	142	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
[1]	143
	144
	145
[1289]	146	# ERROR HANDLING
	147	# IN CASE OF EXIT:
[1]	148	trap 'if [[ $locat != normal ]]
	149	then
	150	case $locat in
	151	(option) printf "\n --> available optios can be displayed"
	152	printf " by typing:"
	153	printf "\n \"subjob ?\" \n";;
	154	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
	155	(*) printf "\n +++ unknown error"
	156	printf "\n please inform S. Raasch!\n"
	157	esac
	158	[[ -f $job_to_send ]] && rm $job_to_send
	159	printf "\n\n+++ SUBJOB killed \n\n"
	160	fi' exit
	161
	162
[1289]	163	# IN CASE OF TERMINAL-BREAK:
[1]	164	trap '[[ -f $job_to_send ]] && rm $job_to_send
	165	printf "\n\n+++ SUBJOB killed \n\n"
	166	exit
	167	' 2
	168
	169
	170
	171
[1289]	172	# DETERMINE NAME OF LOCAL HOST
[1]	173	local_host=$(hostname)
	174
	175
	176
[1289]	177	# SET HOST-SPECIFIC VARIABLES VEREINBAREN (CHECK, IF LOCAL HOST
	178	# IS ADMITTED AT ALL)
	179	# NOTE: ONE OF THE ENTRIES FOR "lck" OR "lckordi" ALWAYS HAS TO BE
	180	# COMMENT OUT, BECAUSE THE HOSTNAME (node*) IS SAME FOR BOTH MACHINES
[1]	181	case $local_host in
[1468]	182	(ambiel-lx) local_address=134.106.74.48; local_host=lcfor;;
	183	(atmos) local_address=172.20.25.35; local_host=lcide;;
	184	(austru) local_address=130.75.105.128; local_host=lcmuk;;
	185	(autan) local_address=130.75.105.57; local_host=lcmuk;;
	186	(bora) local_address=130.75.105.103; local_host=lcmuk;;
	187	(b04*) local_address=133.5.4.33; local_host=lckyuh;;
[1545]	188	(blizzard1\|p0\|p1\|p2\|p3\|p4\|p5\|p6\|p7\|p8\|p9) local_address=136.172.40.15; local_host=ibmh;;
	189	(blizzard2\|p0\|p1\|p2\|p3\|p4\|p5\|p6\|p7\|p8\|p9) local_address=136.172.40.16; local_host=ibmh;;
[1468]	190	(blogin\|bxc) local_address=130.73.233.1; local_host=lccrayb;;
	191	(hlogin\|hxc) local_address=130.75.4.1; local_host=lccrayh;;
	192	(breva) local_address=130.75.105.98; local_host=lcmuk;;
	193	(buran) local_address=130.75.105.58; local_host=lcmuk;;
	194	(caurus) local_address=130.75.105.19; local_host=lcmuk;;
	195	(climate*) local_address=165.132.26.68; local_host=lcyon;;
	196	(clogin*) local_address=86.50.166.21; local_host=lccrayf;;
	197	(cs*) local_address=136.172.44.131; local_host=nech;;
	198	(elephanta) local_address=130.75.105.6; local_host=lcmuk;;
	199	(flow01) local_address=10.141.255.71; local_host=lcflow;;
	200	(flow02) local_address=10.141.255.72; local_host=lcflow;;
	201	(node*) local_address=165.132.26.61 local_host=lck;;
	202	# (node*) local_address=210.219.61.8 local_host=lckordi;;
	203	(gaia*) local_address=150.183.146.24; local_host=ibmkisti;;
	204	(gallego) local_address=130.75.105.10; local_host=lcmuk;;
	205	(gregale) local_address=130.75.105.109; local_host=lcmuk;;
	206	(hababai) local_address=130.75.105.108; local_host=lcmuk;;
	207	(hayaka*) local_address=133.5.4.33; local_host=lckyuh;;
	208	(hexagon.bccs.uib.no) local_address=129.177.20.113; local_host=lcxe6;;
	209	(hx*) local_address=133.3.51.11; local_host=lckyoto;;
	210	(inferno) local_address=130.75.105.5; local_host=lcmuk;;
	211	(irifi) local_address=130.75.105.104; local_host=lcmuk;;
	212	(jaboticaba) local_address=150.163.25.181; local_host=lcbr;;
	213	(sno) local_address=130.75.105.113; local_host=lcmuk;;
	214	(levanto) local_address=130.75.105.45; local_host=lcmuk;;
	215	(login*) local_address=118.128.66.223; local_host=lckiaps;;
	216	(maestro) local_address=130.75.105.2; local_host=lcmuk;;
	217	(meller) local_address=134.106.74.155; local_host=lcfor;;
	218	(meteo-login*) local_address=193.166.211.144;local_host=lcxt5m;;
	219	(hexagon*) local_address=129.177.20.113; local_host=lcxe6;;
	220	(nobel*) local_address=150.183.5.101; local_host=ibms;;
	221	(orkan) local_address=130.75.105.3; local_host=lcmuk;;
	222	(ostria) local_address=130.75.105.106; local_host=lcmuk;;
	223	(paesano) local_address=130.75.105.46; local_host=lcmuk;;
	224	(pcj*) local_address=172.31.120.1; local_host=lckyut;;
	225	(pingui) local_address=134.106.74.118; local_host=lcfor;;
	226	(quanero) local_address=130.75.105.107; local_host=lcmuk;;
	227	(rte*) local_address=133.5.185.60; local_host=lcrte;;
	228	(shiokaze-lx) local_address=134.106.74.123; local_host=lcfor;;
	229	(sisu-login*) local_address=86.50.166.21; local_host=lccrayf;;
	230	(solano) local_address=130.75.105.110; local_host=lcmuk;;
	231	(sugoka*) local_address=172.31.120.1; local_host=lckyut;;
	232	(t2a*) local_address=10.1.6.165; local_host=lctit;;
	233	(urban*) local_address=147.46.30.151 local_host=lcsb;;
	234	(vinessa) local_address=130.75.105.112; local_host=lcmuk;;
	235	(vorias) local_address=172.20.25.43; local_host=lcmuk;;
	236	(*.cc.kyushu-u.ac.jp) local_address=133.5.4.129; local_host=ibmku;;
[1]	237	(*) printf "\n +++ \"$local_host\" unknown";
[1255]	238	printf "\n please contact the PALM group at IMUK";
[1]	239	locat=parameter; exit;;
	240	esac
	241
	242
	243
[1289]	244	# BY DEFAULT, THE REMOTE HOST IS THE LOCAL HOST
[1]	245	remote_host=$local_host
	246
	247
	248
	249
[1289]	250	# READ THE SHELLSCRIPT-OPTIONS
[1094]	251	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
[1]	252	do
	253	case $option in
	254	(c) job_catalog=$OPTARG;;
	255	(d) delete_dayfile=true;;
	256	(D) no_submit=true;;
[352]	257	(e) email_notification=$OPTARG;;
[125]	258	(g) group_number=$OPTARG;;
[1]	259	(h) remote_host=$OPTARG;;
	260	(m) memory=$OPTARG;;
	261	(n) job_name=$OPTARG;;
	262	(N) node_usage=$OPTARG;;
	263	(O) threads_per_task=$OPTARG;;
[1094]	264	(P) scp_port=$OPTARG;;
[1]	265	(q) no_default_queue=$OPTARG;;
	266	(t) cputime=$OPTARG;;
	267	(T) tasks_per_node=$OPTARG;;
	268	(u) remote_user=$OPTARG;;
	269	(v) verify=false;;
	270	(X) numprocs=$OPTARG;;
	271	(\?) printf "\n +++ Option $OPTARG unknown \n";
	272	locat=option; exit;;
	273	esac
	274	done
	275
	276
[1289]	277	# GET THE NAME OF THE JOBFILE AS NEXT ARGUMENT
[1103]	278	(( to_shift = $OPTIND - 1 ))
	279	shift $to_shift; file_to_send=$1
[1]	280
	281
[1289]	282	# OUTPUT OF SHORT DESCRIPTION OF SCRIPT-OPTIONS
[1]	283	if [ "$1" = "?" ]
	284	then
	285	(printf "\n *** subjob can be called as follows:\n"
	286	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
	287	printf "\n Description of available options:\n"
	288	printf "\n Option Description Default-Value"
	289	printf "\n -c job-input- and output-catalog ~/job_queue"
	290	printf "\n -d no job-protocol will be created ---"
	291	printf "\n -D only the job-file will be created ---"
	292	printf "\n -h execution host, available hosts: $remote_host"
[1289]	293	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, lc...,"
	294	printf "\n lckiaps, lctit, nech"
[1]	295	printf "\n -m memory demand per process in MByte ---"
	296	printf "\n -n jobname <jobdatei>"
	297	printf "\n -O threads per task (for OpenMP usage) 1"
[1094]	298	printf "\n -P ssh/scp port default port"
[1]	299	printf "\n -q job-queue to be used default"
	300	printf "\n -t allowed cpu-time in seconds ---"
	301	printf "\n -T tasks per node (on parallel hosts) ---"
	302	printf "\n -u username on execution host from .netrc"
	303	printf "\n -v no prompt for confirmation ---"
	304	printf "\n -X # of processors (on parallel hosts) 1"
	305	printf "\n "
	306	printf "\n The only possible positional parameter is <jobfile>:"
	307	printf "\n The complete NQS-job must be provided here."
	308	printf "\n <jobfile>=? creates this outline\n\n") \| more
	309	exit
	310	fi
	311
	312
	313
[1289]	314	# CHECK, IF JOB-FILE HAS BEEN GIVEN AS ARGUMENT AND IF THE FILE ITSELF EXISTS
[1]	315	if [[ "$file_to_send" = "" ]]
	316	then
	317	printf "\n +++ job-file missing"
	318	locat=parameter; exit
	319	else
	320	if [[ -f $file_to_send ]]
	321	then
	322	true
	323	else
	324	printf "\n +++ job-file: "
	325	printf "\n $file_to_send"
	326	printf "\n does not exist"
	327	locat=parameter; exit
	328	fi
	329	fi
	330
	331
	332
[1289]	333	# IF NO JOBNAME HAS BEEN GIVEN, JOBNAME IS SET TO THE NAME OF THE JOB-FILE,
	334	# PROVIDED THAT THE JOB-FILE NAME DOES NOT CONTAIN ANY PATH
[1]	335	if [[ $job_name = none ]]
	336	then
	337	job_name=$file_to_send
	338	fi
	339	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
	340	then
	341	printf "\n +++ job-file name: "
	342	printf "\n $job_name"
	343	printf "\n must not contain \"/\"-characters"
	344	locat=parameter; exit
	345	fi
	346
	347
	348
	349
[1289]	350	# SET HOST-SPECIFIC QUANTITIES, OR TERMINATE IN CASE OF UNKNOWN HOST,
	351	# OR IF NO HOST HAS BEEN GIVEN
[1]	352	if [[ $remote_host = none ]]
	353	then
	354	printf "\n +++ host missing"
	355	locat=option; exit
	356	else
	357	case $remote_host in
[1468]	358	(ibm) queue=p690_standard; remote_address=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	359	(ibmh) queue=cluster; remote_address=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	360	(ibmkisti) queue=class.32plus; remote_address=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	361	(ibmku) queue=s4; remote_address=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
	362	(ibms) queue=p_normal; remote_address=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[1480]	363	(lccrayb) queue=mpp1testq; remote_address=130.73.233.1; submcom=/opt/moab/default/bin/msub;;
	364	(lccrayh) queue=mpp1testq; remote_address=130.75.4.1; submcom=/opt/moab/default/bin/msub;;
[1468]	365	(lccrayf) queue=small; remote_address=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
[1547]	366	(lcflow) remote_address=10.140.1.72; submcom=qsub;;
[1468]	367	(lckyoto) remote_address=133.3.51.11; submcom=/thin/local/bin/qsub;;
	368	(lck) remote_address=165.132.26.61; submcom=/usr/torque/bin/qsub;;
	369	(lckiaps) remote_address=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
	370	(lckordi) remote_address=210.219.61.8; submcom=/usr/torque/bin/qsub;;
	371	(lckyuh) remote_address=133.5.4.33; submcom=/usr/bin/pjsub;;
	372	(lckyut) remote_address=133.5.4.37; submcom=/usr/bin/pjsub;;
	373	(lcsb) remote_address=147.46.30.151; submcom=/usr/torque/bin/qsub;;
	374	(lctit) queue=S; remote_address=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
	375	(lcxe6) remote_address=129.177.20.113; submcom=/opt/torque/default/bin/qsub;;
	376	(lcxt5m) remote_address=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
	377	(lcyon) remote_address=165.132.26.68; submcom=/usr/torque/bin/qsub;;
	378	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_address=136.172.44.147; submcom="/usr/local/bin/qsub";;
[251]	379	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
	380	locat=parameter; exit;;
[1]	381	esac
	382	fi
	383
	384
[1289]	385	# CHECK, IF A VALID QUEUE HAS BEEN GIVEN
[1]	386	if [[ $no_default_queue != none ]]
	387	then
	388	error=false
	389	ndq=$no_default_queue
	390	case $remote_host in
	391	(ibm) case $ndq in
	392	(p690_express\|p690_standard\|p690_long) error=false;;
	393	(*) error=true;;
	394	esac;;
	395	(ibmh) case $ndq in
[1184]	396	(cluster\|express) error=false;;
[1]	397	(*) error=true;;
	398	esac;;
[693]	399	(ibmkisti) case $ndq in
	400	(class.32plus\|class.1-2\|class.2-32) error=false;;
	401	(*) error=true;;
	402	esac;;
[622]	403	(ibmku) case $ndq in
	404	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
	405	(*) error=true;;
	406	esac;;
[1]	407	(ibms) case $ndq in
	408	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
	409	(*) error=true;;
	410	esac;;
[1224]	411	(lccrayb) case $ndq in
[1480]	412	(dataq\|mpp1q\|mpp1testq\|mpp2q\|mpp2testq\|smp1q\|smp1testq\|specialm1q) error=false;;
[1224]	413	(*) error=true;;
	414	esac;;
[1274]	415	(lccrayh) case $ndq in
[1442]	416	(dataq\|mpp1q\|mpp1testq\|smp1q\|smp1testq\|specialm1q) error=false;;
[1274]	417	(*) error=true;;
	418	esac;;
[1197]	419	(lccrayf) case $ndq in
	420	(usup\|test*\|small\|large) error=false;;
	421	(*) error=true;;
	422	esac;;
[1099]	423	(lcflow) case $ndq in
[1547]	424	(cfd_lom_long.q\|cfd_him_long.q\|cfd_lom_serl.q\|cfd_lom_shrt.q\|cfd_him_shrt.q\|cfd_ivy_shrt.q) error=false;;
[1099]	425	(*) error=true;;
	426	esac;;
[1040]	427	(lckiaps) case $ndq in
	428	(express\|normal) error=false;;
	429	(*) error=true;;
	430	esac;;
[440]	431	(lckyoto) case $ndq in
	432	(eh\|ph) error=false;;
	433	(*) error=true;;
	434	esac;;
[1099]	435	(lckyuh) case $ndq in
	436	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
	437	(*) error=true;;
	438	esac;;
[1090]	439	(lckyut) case $ndq in
	440	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
	441	(*) error=true;;
	442	esac;;
[1]	443	(lctit) case $ndq in
[635]	444	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
[1]	445	(*) error=true;;
	446	esac;;
	447	(t3eb) case $ndq in
	448	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
	449	(*) error=true;;
	450	esac;;
	451	(t3eh) case $ndq in
	452	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
	453	(*) error=true;;
	454	esac;;
	455	(t3ej2\|t3ej5) case $ndq in
	456	(low\|normal\|high) error=false;;
	457	(*) error=true;;
	458	esac;;
	459	(t3es) case $ndq in
	460	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
	461	(*) error=true;;
	462	esac;;
	463	esac
	464	if [[ $error = true ]]
	465	then
	466	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
	467	locat=parameter; exit
	468	else
	469	queue=$no_default_queue
	470	fi
	471	fi
	472
	473
	474
[1289]	475	# CHECK THE CPU-TIME
	476	# SPLIT TIME INTO HOURS, MINUTES, AND SECONDS
[1]	477	done=false
	478	while [[ $done = false ]]
	479	do
	480	if (( $cputime <= 0 ))
	481	then
	482	printf "\n +++ wrong cpu-time or cpu-time missing"
	483	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
	484	printf "\n >>> "
	485	read cputime 1>/dev/null 2>&1
	486	else
	487	done=true
	488	fi
	489	done
	490	if [[ $remote_host = nech ]]
	491	then
	492	if (( tasks_per_node != 0 ))
	493	then
	494	(( cputime = cputime * tasks_per_node ))
	495	elif [[ $numprocs != 0 ]]
	496	then
	497	(( cputime = cputime * numprocs ))
	498	fi
	499	fi
	500	(( stunden = cputime / 3600 ))
	501	(( resttime = cputime - stunden * 3600 ))
	502	(( minuten = resttime / 60 ))
	503	(( sekunden = resttime - minuten * 60 ))
	504	timestring=${stunden}:${minuten}:${sekunden}
	505
	506
	507
[1289]	508	# CHECK THE MEMORY DEMAND
[1]	509	done=false
	510	while [[ $done = false ]]
	511	do
	512	if (( memory <= 0 ))
	513	then
	514	printf "\n +++ wrong memory demand or memory demand missing"
	515	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	516	printf "\n >>> "
	517	read memory 1>/dev/null 2>&1
	518	else
	519	done=true
	520	fi
	521	done
	522
[1289]	523	if [[ $remote_host = nech ]]
[1]	524	then
	525	if (( tasks_per_node != 0 ))
	526	then
	527	(( Memory = memory * tasks_per_node / 1000 ))
	528	elif [[ $numprocs != 0 ]]
	529	then
	530	(( Memory = memory * numprocs / 1000 ))
	531	else
	532	(( Memory = memory / 1000 ))
	533	fi
[635]	534	elif [[ $remote_host = lctit ]]
	535	then
	536	(( Memory = memory * tasks_per_node / 1000 ))
[1]	537	fi
	538
	539
[1289]	540	# MEMORY DEMAND IN CASE OF OPENMP-USAGE ON IBM-SYSTEMS
[1]	541	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	542	then
	543	(( memory = memory * threads_per_task ))
	544	fi
	545
	546
[1289]	547	# CALCULATE NUMBER OF REQUIRED NODES
[1]	548	if (( tasks_per_node != 0 ))
	549	then
[1279]	550	(( nodes = ( numprocs - 1 ) / ( tasks_per_node * threads_per_task ) + 1 ))
[1]	551	fi
	552
[1094]	553
[1289]	554	# CALCULATE NUMBER OF PROCESSES PER NODE
[622]	555	(( processes_per_node = tasks_per_node * threads_per_task ))
[1]	556
[1094]	557
[1289]	558	# CALCULATE NUMBER OF MPI TASKS
[696]	559	(( mpi_tasks = numprocs / threads_per_task ))
[1]	560
[696]	561
[1289]	562	# SET PORT NUMBER OPTION FOR CALLS OF ssh/scp, subjob AND batch_scp SCRIPTS
[1094]	563	if [[ "$scp_port" != "" ]]
	564	then
	565	PORTOPT="-P $scp_port"
	566	SSH_PORTOPT="-p $scp_port"
	567	fi
	568
	569
[1289]	570	# HEADER-OUTPUT
[1]	571	if [[ $verify = true ]]
	572	then
	573	printf "\n\n"
	574	printf "#--------------------------------------------------------------# \n"
	575	spalte1=SUBJOB;spalte2=$(date)
[1103]	576	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
[1]	577	printf "\| \| \n"
	578	printf "\| values of parameters/options: \| \n"
[1103]	579	spalte1=$(echo local_host$punkte \| cut -c-20)
	580	spalte2=$punkte$local_host
	581	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	582	spalte1=$(echo remote_host$punkte \| cut -c-20)
	583	spalte2=$punkte$remote_host
	584	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	585	spalte1=$(echo queue$punkte \| cut -c-20)
	586	spalte2=$punkte$queue
	587	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	588	spalte1=$(echo memory$punkte \| cut -c-20)
	589	spalte2="$punkte$memory mb"
	590	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	591	spalte1=$(echo cputime$punkte \| cut -c-20)
	592	spalte2="$punkte$cputime sec"
	593	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	594	spalte1=$(echo job_name$punkte \| cut -c-20)
	595	spalte2="$punkte$job_name"
	596	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
[1]	597	printf "#--------------------------------------------------------------# \n\n"
	598
	599
[1289]	600	# QUERY CHECK
[1]	601	antwort="dummy"
	602	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
	603	do
	604	read antwort?" >>> continue (y/n) ? "
	605	done
	606	if [[ $antwort = n \|\| $antwort = N ]]
	607	then
	608	locat=verify; exit
	609	fi
	610	printf "\n"
	611	fi
	612
	613
	614
[1289]	615	# GENERATE RANDOM IDENTIFIER, AND DETERMINE THE JOBNAME ON THE TARGET HOST
	616	identifier=$RANDOM
	617	job_on_remhost=${job_name}_${identifier}_$local_host
	618	job_to_send=job_to_send_$identifier
[1]	619	if [[ $delete_dayfile = false ]]
	620	then
[1289]	621	remote_dayfile=${local_host}_${job_name}_result_$identifier
[1]	622	local_dayfile=${remote_host}_${job_name}
	623	else
	624	remote_dayfile=/dev/null
	625	fi
	626
	627
	628
[1289]	629	# GENERATE THE BATCH-JOB SCRIPTS (FOR QUEUEING-SYSTEMS qsub/msub/LoadLeveler)
[1]	630	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
	631	then
	632
[1289]	633	# GENERAL LOADLEVELER SETTINGS
[622]	634	execute_in_shell="#!/bin/ksh"
	635	use_shell="# @ shell = /bin/ksh"
	636	consumable_memory="ConsumableMemory($memory mb)"
	637	class="# @ class = $queue"
	638	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
	639	network_to_use="# @ network.mpi = sn_all,shared,us"
	640	data_limit="# @ data_limit = 1.76gb"
	641	image_size="# @ image_size = 50"
[693]	642	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
[312]	643
[693]	644	if [[ $email_notification = none ]]
	645	then
	646	notify_user=""
	647	else
	648	notify_user="# @ notify_user = $email_notification"
	649	if [[ $delete_dayfile = true ]]
	650	then
	651	notification='# @ notification = never'
	652	fi
	653	fi
[622]	654
[312]	655	if [[ $remote_host = ibmh ]]
[1]	656	then
[312]	657	data_limit=""
	658	network_to_use=""
[1184]	659	class="# @ class = $queue"
[312]	660	environment=""
[814]	661	rset="# @ rset = RSET_MCM_AFFINITY"
	662	task_affinity="# @ task_affinity = core(1)"
[693]	663	elif [[ $remote_host = ibmkisti ]]
	664	then
	665	network_to_use="# @ network.MPI = sn_all,shared,US"
	666	wall_clock_limit="# @ wall_clock_limit = $timestring"
[696]	667	if [[ $threads_per_task = 1 ]]
	668	then
	669	rset="# @ rset = RSET_MCM_AFFINITY"
	670	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
	671	fi
[693]	672	environment=""
	673	use_shell=""
	674	data_limit=""
	675	image_size=""
[622]	676	elif [[ $remote_host = ibmku ]]
	677	then
	678	execute_in_shell="#!/usr/bin/ksh"
	679	use_shell="# @ shell = /usr/bin/ksh"
	680	consumable_memory=""
	681	environment=""
	682	network_to_use="# @ network.mpi = sn_all,shared,us"
	683	data_limit=""
	684	image_size=""
	685	elif [[ $remote_host = ibms ]]
	686	then
	687	network_to_use="# @ network.mpi = csss,shared,us"
[1]	688	fi
	689
	690	cat > $job_to_send << %%END%%
[622]	691	$execute_in_shell
	692	$use_shell
[1]	693
	694	# @ job_type = parallel
[693]	695	# @ job_name = $job_name
[1]	696	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
	697	# @ output = $remote_dayfile
	698	# @ error = $remote_dayfile
[693]	699	$wall_clock_limit
[622]	700	$image_size
[312]	701	$class
	702	$environment
[1]	703	$network_to_use
	704	$data_limit
[693]	705	$rset
	706	$mcm_affinity_options
[814]	707	$task_affinity
[1]	708	$notification
[693]	709	$notify_user
[1]	710
	711	%%END%%
	712
	713	if (( nodes > 0 ))
	714	then
	715
[693]	716	if [[ $remote_host != ibmkisti ]]
	717	then
	718
	719	cat >> $job_to_send << %%END%%
[1]	720	# @ node = $nodes
[622]	721	# @ tasks_per_node = $processes_per_node
[1]	722	# @ node_usage = $node_usage
	723	# @ queue
	724
	725	%%END%%
	726
[693]	727	else
	728
	729	cat >> $job_to_send << %%END%%
[696]	730	# @ total_tasks = $mpi_tasks
[693]	731	# @ blocking = unlimited
	732	# @ queue
	733
	734	%%END%%
	735
	736	fi
	737
[1]	738	else
	739
[1289]	740	cat >> $job_to_send << %%END%%
[1]	741	# @ blocking = unlimited
	742	# @ total_tasks = $numprocs
	743	# @ node_usage = $node_usage
	744	# @ queue
	745
	746	%%END%%
	747
	748	fi
	749
[1289]	750	# WORKAROUND BECAUSE OF SILLY JOB FILTER ON ibmkisti
[696]	751	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
	752	then
	753	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
	754	fi
	755
[1]	756	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
	757	then
	758
	759	cat > $job_to_send << %%END%%
	760	#!/bin/ksh
	761
	762	# @ job_type = serial
	763	# @ node_usage = $node_usage
	764	# @ job_name = palm
	765	# @ wall_clock_limit = ${timestring},$timestring
	766	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
	767	# @ output = $remote_dayfile
	768	# @ error = $remote_dayfile
[312]	769	$class
[1]	770	$notification
	771
	772	# @ queue
	773
	774	%%END%%
	775
[1274]	776	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
[1224]	777	then
	778
[1480]	779	if [[ "$feature" != "" ]]
	780	then
	781	featuredir="#PBS -l feature=$feature"
	782	fi
	783
[1224]	784	if [[ $numprocs != 0 ]]
	785	then
	786	cat > $job_to_send << %%END%%
[1255]	787	#!/bin/bash
[1224]	788	#PBS -N $job_name
	789	#PBS -l walltime=$timestring
[1264]	790	#PBS -l nodes=$nodes:ppn=$processes_per_node
[1224]	791	#PBS -o $remote_dayfile
	792	#PBS -j oe
	793	#PBS -q $queue
[1480]	794	$featuredir
[1224]	795
	796	$module_calls
	797
	798	%%END%%
	799
	800	else
	801
	802	continue
	803
	804	fi
	805
[1197]	806	elif [[ $remote_host = lccrayf ]]
	807	then
	808
	809	if [[ $numprocs != 0 ]]
	810	then
	811	cat > $job_to_send << %%END%%
	812	#!/bin/bash -l
	813	#SBATCH -J $job_name
	814	#SBATCH -t $timestring
	815	#SBATCH -N $nodes
	816	#SBATCH --ntasks-per-node=$processes_per_node
	817	#SBATCH -p $queue
	818	#SBATCH -o $remote_dayfile
	819	#SBATCH -e $remote_dayfile
	820
	821	$init_cmds
	822	$module_calls
	823
	824	%%END%%
	825
	826	else
	827	cat > $job_to_send << %%END%%
	828	#!/bin/bash -l
	829	#SBATCH -J $job_name
	830	#SBATCH -t $timestring
	831	#SBATCH -l ncpus=1
	832	#SBATCH -l pmem=${memory}mb
	833	#SBATCH -m abe
	834	#SBATCH -o $remote_dayfile
	835	#SBATCH -e $remote_dayfile
	836
	837	$init_cmds
	838	$module_calls
	839
	840	%%END%%
	841
	842	fi
	843
[1099]	844	elif [[ $remote_host = lcflow ]]
	845	then
	846	if [[ $numprocs != 0 ]]
	847	then
[1547]	848	pe_set="#$ -pe impi $numprocs"
[1099]	849	else
[1547]	850	pe_set="#$ -pe impi 1"
[1099]	851	fi
	852	if [[ $queue = default ]]
	853	then
	854	queue_set=""
	855	else
	856	queue_set="#$ -q $queue"
	857	fi
	858	[[ "$disc_space" = "" ]] && disc_space=50
	859
	860	cat > $job_to_send << %%END%%
	861	#!/bin/bash
	862	#$ -S /bin/bash
	863	#$ -N $job_name
	864	#$ -cwd
	865	#$ -l h_rt=$timestring
	866	#$ -l h_vmem=${memory}M
	867	#$ -o $remote_dayfile
	868	#$ -j y
	869	$pe_set
	870	#$ -R y
	871	#$ -l h_fsize=${disc_space}G
	872	$queue_set
	873
	874	%%END%%
	875
[1021]	876	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
[368]	877	then
	878
	879	if [[ $numprocs != 0 ]]
	880	then
	881	cat > $job_to_send << %%END%%
	882	#!/bin/ksh
	883	#PBS -N $job_name
	884	#PBS -l walltime=$timestring
	885	#PBS -l ncpus=$numprocs
	886	#PBS -l pmem=${memory}mb
	887	#PBS -o $remote_dayfile
[1021]	888	#PBS -l nodes=$nodes:ppn=${processes_per_node}
[368]	889	#PBS -j oe
	890
	891	mpd &
	892
	893	%%END%%
	894
	895	else
	896	cat > $job_to_send << %%END%%
	897	#!/bin/ksh
	898	#PBS -N $job_name
	899	#PBS -l walltime=$timestring
	900	#PBS -l ncpus=1
	901	#PBS -l pmem=${memory}mb
	902	#PBS -o $remote_dayfile
	903	#PBS -j oe
	904
	905	%%END%%
	906
	907	fi
	908
[1040]	909	elif [[ $remote_host = lckiaps ]]
	910	then
	911
	912	if [[ $numprocs != 0 ]]
	913	then
	914	cat > $job_to_send << %%END%%
	915	#!/bin/ksh
	916	#PBS -N $job_name
	917	#PBS -l walltime=$timestring
	918	#PBS -l select=1:ncpus=$numprocs
	919	#PBS -l pmem=${memory}mb
	920	#PBS -q $queue
	921	#PBS -o $remote_dayfile
	922	#PBS -j oe
	923	#PBS -V
	924
	925	%%END%%
	926
	927	else
	928	cat > $job_to_send << %%END%%
	929	#!/bin/ksh
	930	#PBS -N $job_name
	931	#PBS -l walltime=$timestring
	932	#PBS -l ncpus=1
	933	#PBS -l pmem=${memory}mb
	934	#PBS -o $remote_dayfile
	935	#PBS -j oe
	936
	937	%%END%%
	938
	939	fi
	940
[693]	941	elif [[ $remote_host = lcyon ]]
	942	then
	943
	944	if [[ $numprocs != 0 ]]
	945	then
	946	cat > $job_to_send << %%END%%
	947	#!/bin/ksh
	948	#PBS -N $job_name
	949	#PBS -l walltime=$timestring
	950	#PBS -l ncpus=$numprocs
	951	#PBS -l pmem=${memory}mb
	952	#PBS -o $remote_dayfile
	953	#PBS -j oe
	954
	955	%%END%%
	956
	957	else
	958	cat > $job_to_send << %%END%%
	959	#!/bin/ksh
	960	#PBS -N $job_name
	961	#PBS -l walltime=$timestring
	962	#PBS -l ncpus=1
	963	#PBS -l pmem=${memory}mb
	964	#PBS -o $remote_dayfile
	965	#PBS -j oe
	966
	967	%%END%%
	968
	969	fi
	970
[892]	971	elif [[ $remote_host = lcxe6 ]]
[164]	972	then
	973
	974	if [[ $numprocs != 0 ]]
	975	then
	976	cat > $job_to_send << %%END%%
[799]	977	#!/bin/ksh
[164]	978	#PBS -S /bin/ksh
	979	#PBS -N $job_name
[552]	980	#PBS -A $project_account
[206]	981	#PBS -j oe
[164]	982	#PBS -l walltime=$timestring
	983	#PBS -l mppwidth=${numprocs}
[622]	984	#PBS -l mppnppn=${processes_per_node}
[164]	985	#PBS -m abe
	986	#PBS -o $remote_dayfile
[492]	987	$email_directive
[164]	988
[892]	989	$init_cmds
[493]	990	$module_calls
[343]	991
[164]	992	%%END%%
	993
[108]	994	else
	995	cat > $job_to_send << %%END%%
	996	#!/bin/ksh
[168]	997	#PBS -S /bin/ksh
[108]	998	#PBS -N $job_name
[552]	999	#PBS -A $project_account
[206]	1000	#PBS -j oe
[108]	1001	#PBS -l walltime=$timestring
	1002	#PBS -l ncpus=1
	1003	#PBS -l pmem=${memory}mb
	1004	#PBS -m abe
[492]	1005	$email_directive
[108]	1006	#PBS -o $remote_dayfile
	1007
[892]	1008	$init_cmds
[493]	1009	$module_calls
[343]	1010
[108]	1011	%%END%%
	1012
	1013	fi
	1014
[440]	1015	elif [[ $remote_host = lckyoto ]]
[437]	1016	then
	1017
[440]	1018	cat > $job_to_send << %%END%%
[799]	1019	#!/bin/ksh
[440]	1020	# @\$-o $remote_dayfile
	1021	# @\$-eo -oi
	1022	# @\$-lP 16
[799]	1023	# @\$-lp 1
[440]	1024	# @\$-lm 28gb -llm unlimited -ls unlimited
	1025	# @\$-q $queue
	1026	# @\$-Pvn abs_pack
	1027	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
	1028	#. /thin/local/etc/setprofile/intel-11.0.sh
	1029	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
	1030	. ~/.myprofile
	1031	#. /home2/t/t51254/palm/current_version/myprofile
	1032	#. /thin/apps/pgi/mpi.sh
	1033	#
	1034	env
	1035	#
	1036	set -x
	1037
	1038	%%END%%
	1039
	1040	elif [[ $remote_host = lcxt5m ]]
	1041	then
	1042
[437]	1043	if [[ $numprocs != 0 ]]
	1044	then
	1045	cat > $job_to_send << %%END%%
[799]	1046	#!/bin/ksh
[437]	1047	#PBS -S /bin/ksh
	1048	#PBS -N $job_name
	1049	#PBS -j oe
	1050	#PBS -l walltime=$timestring
	1051	#PBS -l mppwidth=${numprocs}
[622]	1052	#PBS -l mppnppn=${processes_per_node}
[437]	1053	#PBS -m abe
	1054	#PBS -o $remote_dayfile
	1055
[892]	1056	$init_cmds
[493]	1057	$module_calls
[437]	1058
	1059	%%END%%
	1060
	1061	else
	1062	cat > $job_to_send << %%END%%
	1063	#!/bin/ksh
	1064	#PBS -S /bin/ksh
	1065	#PBS -N $job_name
	1066	#PBS -j oe
	1067	#PBS -l walltime=$timestring
	1068	#PBS -l ncpus=1
	1069	#PBS -l pmem=${memory}mb
	1070	#PBS -m abe
	1071	#PBS -o $remote_dayfile
	1072
[892]	1073	$init_cmds
[493]	1074	$module_calls
[437]	1075
	1076	%%END%%
	1077
	1078	fi
	1079
[1099]	1080	elif [[ $remote_host = lckyuh ]]
	1081	then
	1082	cat > $job_to_send << %%END%%
	1083	#!/bin/bash
	1084	#PJM -L "rscgrp=$queue"
	1085	#PJM -L "node=$nodes"
	1086	#PJM --mpi "proc=$numprocs"
	1087	#PJM -L "elapse=$timestring"
	1088	#PJM -o $remote_dayfile
	1089	#PJM -j
	1090	#PJM -X
	1091	#PJM --no-stging
	1092
	1093	export LANG=en_US.UTF-8
	1094	%%END%%
	1095
[1090]	1096	elif [[ $remote_host = lckyut ]]
	1097	then
	1098	cat > $job_to_send << %%END%%
	1099	#!/bin/bash
[1099]	1100	#PJM -L "rscgrp=$queue"
[1090]	1101	#PJM -L "vnode=$numprocs"
	1102	#PJM -L "vnode-core=1"
	1103	#PJM -L "elapse=$timestring"
	1104	#PJM --mpi proc=$numprocs
	1105	#PJM -o $remote_dayfile
	1106	#PJM -j
[1099]	1107	#PJM -X
	1108	#PJM --no-stging
[1090]	1109
	1110	export LANG=en_US.UTF-8
	1111	%%END%%
	1112
[1]	1113	elif [[ $remote_host = nech ]]
	1114	then
	1115
	1116	if (( nodes > 1 ))
	1117	then
	1118	cat > $job_to_send << %%END%%
	1119	#!/bin/ksh
[622]	1120	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
[1]	1121	#PBS -l ${qsubmem}=${Memory}gb
	1122	#PBS -b $nodes
	1123	#PBS -o $remote_dayfile
	1124	#PBS -N palm
	1125	#PBS -j o
	1126	#PBS -T mpisx
	1127
	1128	%%END%%
	1129
	1130	elif [[ $numprocs != 0 ]]
	1131	then
	1132	cat > $job_to_send << %%END%%
	1133	#!/bin/ksh
[622]	1134	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
[1]	1135	#PBS -l ${qsubmem}=${Memory}gb
	1136	#PBS -o $remote_dayfile
	1137	#PBS -N palm
	1138	#PBS -j o
	1139
	1140	%%END%%
	1141
	1142	else
	1143	cat > $job_to_send << %%END%%
	1144	#!/bin/ksh
	1145	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
	1146	#PBS -o $remote_dayfile
	1147	#PBS -j o
	1148
	1149	%%END%%
	1150
	1151	fi
	1152
	1153	elif [[ $remote_host = lctit ]]
	1154	then
	1155	cat > $job_to_send << %%END%%
[635]	1156	#!/bin/ksh
[892]	1157	$init_cmds
[678]	1158	$module_calls
	1159
[1]	1160	%%END%%
	1161
[1289]	1162	# SET OPTIONS FOR SUBMIT-COMMAND
[678]	1163	if [[ $tasks_per_node != $processes_per_node ]]
	1164	then
[1378]	1165	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -et 1 -q $queue "
[678]	1166	else
[1378]	1167	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -et 1 -q $queue "
[678]	1168	fi
[1]	1169
	1170	else
	1171
	1172	cat > $job_to_send << %%END%%
	1173	# @\$-q ${queue}
	1174	# @\$-l${qsubtime} $timestring
	1175	# @\$-l${qsubmem} ${memory}mb
	1176	# @\$-o $remote_dayfile
	1177	# @\$-eo
	1178
	1179	%%END%%
	1180
	1181	fi
	1182
	1183
[1289]	1184	# IN CASE OF JOBS EXECUTING ON REMOTE-HOSTS, THE TRANSFER OF THE DAYFILES
	1185	# TO THE LOCAL HOSTS WILL BE INITIATED BY TRAP ON EXIT
	1186	# NO TRANSFER POSSIBLE ON IBM IN SEOUL
[1]	1187	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
	1188	then
	1189	echo "set +vx" >> $job_to_send
	1190	echo "trap '" >> $job_to_send
	1191	echo "set +vx" >> $job_to_send
[1468]	1192	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $remote_host = lccrayb \|\| $remote_host = lccrayh \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lcflow \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* \|\| $remote_host = lcxe6 ]]
[1]	1193	then
[622]	1194	if [[ $remote_host = ibmh ]]
[1]	1195	then
	1196	return_queue=c1
[693]	1197	elif [[ $remote_host = ibmkisti ]]
	1198	then
	1199	return_queue=class.1-2
[622]	1200	elif [[ $remote_host = ibmku ]]
	1201	then
	1202	return_queue=sdbg2
[1]	1203	elif [[ $remote_host = ibms ]]
	1204	then
	1205	return_queue=p_normal
[1274]	1206	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
[1255]	1207	then
	1208	return_queue=dataq
[1468]	1209	elif [[ $remote_host = lcxe6 ]]
	1210	then
	1211	return_queue=debug
[1040]	1212	elif [[ $remote_host = lckiaps ]]
	1213	then
	1214	return_queue=express
[1099]	1215	elif [[ $remote_host = lckyuh ]]
	1216	then
	1217	return_queue=cx-single
[1090]	1218	elif [[ $remote_host = lckyut ]]
	1219	then
	1220	return_queue=cx-single
[1]	1221	else
	1222	return_queue=unknown
	1223	fi
	1224
	1225	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1226	then
	1227
[622]	1228	if [[ $remote_host = ibmku ]]
	1229	then
[1289]	1230	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
	1231	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
[622]	1232	else
[1289]	1233	echo "echo \"#!/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
[622]	1234	fi
[1289]	1235	echo "echo \"# @ job_type = serial\" >> scpjob.$identifier" >> $job_to_send
	1236	echo "echo \"# @ job_name = transfer\" >> scpjob.$identifier" >> $job_to_send
	1237	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$identifier" >> $job_to_send
	1238	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$identifier " >> $job_to_send
	1239	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
	1240	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
[312]	1241	if [[ $host != "ibmh" ]]
	1242	then
[1289]	1243	echo "echo \"# @ class = $return_queue\" >> scpjob.$identifier" >> $job_to_send
[312]	1244	fi
[1289]	1245	echo "echo \"# @ image_size = 10\" >> scpjob.$identifier" >> $job_to_send
	1246	echo "echo \"# @ notification = never\" >> scpjob.$identifier" >> $job_to_send
[1]	1247
[1289]	1248	echo "echo \"# @ queue\" >> scpjob.$identifier" >> $job_to_send
	1249	echo "echo \" \" >> scpjob.$identifier" >> $job_to_send
[1]	1250
[1289]	1251	echo "echo \"set -x\" >> scpjob.$identifier" >> $job_to_send
[1468]	1252	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$identifier" >> $job_to_send
[622]	1253	if [[ $remote_host = ibmku ]]
	1254	then
[1289]	1255	echo "echo \"rm scpjob.$identifier\" >> scpjob.$identifier" >> $job_to_send
[622]	1256	fi
[1289]	1257	echo "echo \"exit\" >> scpjob.$identifier" >> $job_to_send
[1]	1258
	1259	elif [[ $remote_host = nech ]]
	1260	then
	1261	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
[1289]	1262	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
[1]	1263	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
	1264	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
	1265	echo "#PBS -j o" >> $job_to_send
	1266	echo " " >> $job_to_send
	1267	echo "set -x" >> $job_to_send
	1268	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
[1468]	1269	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1]	1270	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1271	echo "%%END%%" >> $job_to_send
	1272
[1099]	1273	elif [[ $remote_host = lckyuh ]]
	1274	then
[1289]	1275	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
[1099]	1276	echo "#!/bin/bash" >> $job_to_send
	1277	echo "#PJM -L \"node=1\"" >> $job_to_send
	1278	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
	1279	echo "#PJM --no-stging" >> $job_to_send
	1280	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
	1281	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1282	echo "#PJM -j" >> $job_to_send
	1283	echo " " >> $job_to_send
	1284	echo "export LANG=en_US.UTF-8" >> $job_to_send
	1285	echo "set -x" >> $job_to_send
[1468]	1286	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1099]	1287	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1288	echo "%%END%%" >> $job_to_send
	1289
[1090]	1290	elif [[ $remote_host = lckyut ]]
	1291	then
[1289]	1292	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
[1090]	1293	echo "#!/bin/bash" >> $job_to_send
	1294	echo "#PJM -L \"vnode=1\"" >> $job_to_send
	1295	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
	1296	echo "#PJM --no-stging" >> $job_to_send
	1297	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
	1298	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1299	echo "#PJM -j" >> $job_to_send
	1300	echo " " >> $job_to_send
	1301	echo "export LANG=en_US.UTF-8" >> $job_to_send
	1302	echo "set -x" >> $job_to_send
[1468]	1303	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1090]	1304	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1305	echo "%%END%%" >> $job_to_send
	1306
[1274]	1307	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
[1255]	1308	then
[1289]	1309	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
[1255]	1310	echo "#!/bin/bash" >> $job_to_send
	1311	echo "#PBS -N job_protocol_transfer" >> $job_to_send
	1312	echo "#PBS -l walltime=00:30:00" >> $job_to_send
[1262]	1313	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
[1255]	1314	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1315	echo "#PBS -j oe" >> $job_to_send
	1316	echo " " >> $job_to_send
	1317	echo "set -x" >> $job_to_send
[1468]	1318	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1255]	1319	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1320	echo "%%END%%" >> $job_to_send
	1321
[1099]	1322	elif [[ $remote_host = lcflow ]]
	1323	then
[1289]	1324	echo "cat > scpjob.${identifier}.tmp << %%END%%" >> $job_to_send
[1099]	1325	echo "#!/bin/bash" >> $job_to_send
	1326	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
	1327	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
	1328	echo "SGEPREFIX -cwd" >> $job_to_send
	1329	echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
[1202]	1330	echo "SGEPREFIX -l h_vmem=500M" >> $job_to_send
[1099]	1331	echo "SGEPREFIX -j y" >> $job_to_send
[1289]	1332	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$identifier" >> $job_to_send
[1099]	1333	echo " " >> $job_to_send
	1334	echo "set -x" >> $job_to_send
	1335	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
	1336	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
	1337	echo "" >> $job_to_send
[1468]	1338	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1099]	1339	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
[1289]	1340	echo "rm -f scpjob.${identifier}" >> $job_to_send
[1099]	1341	echo "%%END%%" >> $job_to_send
[1289]	1342	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${identifier}.tmp > scpjob.${identifier}" >> $job_to_send
	1343	echo "rm -f scpjob.${identifier}.tmp" >> $job_to_send
[1468]	1344	elif [[ $remote_host = lcxe6 ]]
	1345	then
	1346	echo "cat > scpjob.${identifier} << %%END%%" >> $job_to_send
	1347	echo "#!/bin/ksh" >> $job_to_send
	1348	echo "#PBS -N job_protocol_transfer" >> $job_to_send
	1349	echo "#PBS -l walltime=00:30:00" >> $job_to_send
	1350	echo "#PBS -A $project_account" >> $job_to_send
	1351	echo "#PBS -l mppwidth=1" >> $job_to_send
	1352	echo "#PBS -l mppnppn=1" >> $job_to_send
	1353	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1354	echo "#PBS -j oe" >> $job_to_send
	1355	echo " " >> $job_to_send
	1356	echo "set -x" >> $job_to_send
	1357	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1358	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1359	echo "%%END%%" >> $job_to_send
[1]	1360	else
	1361
[1289]	1362	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
[1]	1363	echo "# @\\\$-q $return_queue" >> $job_to_send
	1364	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
	1365	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
	1366	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
	1367	then
	1368	echo "# @\$-l mpp_p=0" >> $job_to_send
	1369	fi
	1370	echo '# @\$-lF 10mb' >> $job_to_send
	1371	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
	1372	echo '# @\\\$-eo' >> $job_to_send
	1373	echo " " >> $job_to_send
	1374	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1375	then
	1376	echo "set +vx" >> $job_to_send
	1377	echo ". .profile" >> $job_to_send
	1378	fi
	1379	echo "set -x" >> $job_to_send
[1468]	1380	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
[1]	1381	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1382	echo "%%END%%" >> $job_to_send
	1383	fi
	1384
	1385	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1386	then
[1289]	1387	echo "llsubmit scpjob.$identifier" >> $job_to_send
[1274]	1388	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
[1255]	1389	then
[1289]	1390	echo "msub -q $return_queue scpjob.$identifier" >> $job_to_send
[1]	1391	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1392	then
[1289]	1393	echo "qsub -J n scpjob.$identifier" >> $job_to_send
[1]	1394	elif [[ $remote_host = t3es ]]
	1395	then
[1289]	1396	echo "qsub -J n -s /bin/ksh scpjob.$identifier" >> $job_to_send
[1043]	1397	elif [[ $remote_host = lckiaps ]]
	1398	then
[1289]	1399	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
[1468]	1400	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"$submcom ${job_catalog}/scpjob.$identifier\" " >> $job_to_send
[1289]	1401	echo "rm ${job_catalog}/scpjob.$identifier" >> $job_to_send
[1099]	1402	elif [[ $remote_host = lckyu* ]]
[1090]	1403	then
[1468]	1404	echo "scp $PORTOPT scpjob.$identifier ${remote_username}@${remote_address}:job_queue" >> $job_to_send
	1405	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"cd job_queue; $submcom scpjob.$identifier; rm scpjob.$identifier\" " >> $job_to_send
[1099]	1406	elif [[ $remote_host = lcflow ]]
	1407	then
[1289]	1408	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
[1468]	1409	echo "/usr/bin/ssh ${remote_username}@${remote_address} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$identifier\" " >> $job_to_send
[1]	1410	else
[1289]	1411	echo "$submcom scpjob.$identifier" >> $job_to_send
[1]	1412	fi
[1043]	1413	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
[622]	1414	then
[1289]	1415	echo "rm scpjob.$identifier" >> $job_to_send
[622]	1416	fi
[1]	1417	if [[ $remote_host = nech ]]
	1418	then
	1419	echo "cd -" >> $job_to_send
	1420	fi
	1421	else
[1468]	1422	# echo "ftpcopy -d $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1289]	1423	# ??? funktioniert das ÃŒberhaupt noch ???
[1468]	1424	echo "nohup ftpcopy -d -w 15 $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
[1]	1425	fi
	1426	echo "set -x" >> $job_to_send
	1427	echo " ' exit" >> $job_to_send
	1428	echo "set -x" >> $job_to_send
	1429	fi
	1430
	1431
	1432
[1289]	1433	# APPEND THE JOB-FILE (CREATE BY mrun) TO THE JOB-DIRECTIVES GENERATED ABOVE
[1]	1434	cat $file_to_send >> $job_to_send
[69]	1435
[1]	1436	if [[ $remote_host = ibm ]]
	1437	then
	1438	echo " " >> $job_to_send
	1439	echo "exit" >> $job_to_send
	1440	fi
[635]	1441
[1289]	1442	# REMOVE JOB-FILE
[1099]	1443	if [[ $remote_host = lctit \|\| $remote_host = ibmku \|\| $remote_host = lcflow ]]
[69]	1444	then
	1445	echo " " >> $job_to_send
	1446	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
	1447	fi
[1]	1448
	1449
[1289]	1450	# TRANSFER JOB TO THE TARGET HOST (JOB-DIRECTORY)
[1]	1451	if [[ $no_submit = false ]]
	1452	then
	1453	if [[ $remote_host != $local_host ]]
	1454	then
	1455	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
[1289]	1456	if [[ $remote_host = ibms ]] # ssh on ibms cannot handle "~/"
[1]	1457	then
[82]	1458	job_catalog_save=$job_catalog
	1459	job_catalog=job_queue
	1460	elif [[ $remote_host = nech ]]
	1461	then
	1462	job_catalog_save=$job_catalog
	1463	job_catalog=/hpf/b/${remote_user}/job_queue
	1464	fi
[1096]	1465	if [[ $remote_host = nech ]]
[82]	1466	then
[1289]	1467	# FILES CAN ONLY BE TRANSFERED VIA DKRZ'S ARCHIVE-SERVER
[1094]	1468	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
[1]	1469	else
[1468]	1470	scp $PORTOPT $job_to_send ${remote_user}@${remote_address}:${job_catalog}/$job_on_remhost
[1]	1471	fi
[82]	1472	if [[ $? = 1 ]]
	1473	then
	1474	locat=scp; exit
	1475	fi
	1476	if [[ $remote_host = ibms ]]
	1477	then
	1478	job_catalog=$job_catalog_save
	1479	fi
[1]	1480	[[ $verify = true ]] && printf "\n >>> finished\n"
	1481	else
	1482	eval job_catalog=$job_catalog
	1483	cp $job_to_send ${job_catalog}/$job_on_remhost
	1484	fi
	1485
	1486
	1487
[1289]	1488	# START NQS- / LOADLEVELER-JOB
[1]	1489	if [[ $remote_host != $local_host ]]
	1490	then
	1491	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
[635]	1492
[1289]	1493	if [[ $remote_host = ibmku ]]
[1]	1494	then
[1468]	1495	ssh $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
[1099]	1496	elif [[ $remote_host = lcflow ]]
	1497	then
[1468]	1498	/usr/bin/ssh $SSH_PORTOPT $remote_address -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
[1]	1499	else
[1468]	1500	ssh $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
[82]	1501	fi
[1]	1502
	1503	[[ $verify = true ]] && printf " >>> o.k.\n"
	1504	else
	1505	cd $job_catalog
[1289]	1506	if [[ $(echo $local_host \| cut -c1-3) = ibm \|\| $(echo $local_host \| cut -c1-6) = lccray ]]
[1]	1507	then
	1508	eval $submcom $job_on_remhost
[1289]	1509	elif [[ $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyu* ]]
[108]	1510	then
[635]	1511	chmod u+x $job_on_remhost
[108]	1512	eval $submcom $job_on_remhost
[1]	1513	elif [[ $local_host = nech ]]
	1514	then
	1515	if [[ $queue = default ]]
	1516	then
[799]	1517	eval $submcom $job_on_remhost
[1]	1518	else
[799]	1519	eval $submcom -q $queue $job_on_remhost
[1]	1520	fi
	1521	else
	1522	qsub $job_on_remhost
	1523	fi
[622]	1524
[1289]	1525	# JOBFILE MUST NOT BE DELETED ON lctit/ibmku/lcflow. THIS WILL BE DONE
	1526	# AT THE END OF THE JOB
[1099]	1527	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
[622]	1528	then
	1529	rm $job_on_remhost
	1530	fi
[1]	1531	cd - > /dev/null
	1532	fi
	1533	fi
	1534
	1535
	1536
[1289]	1537	# FINAL ACTIONS
[1]	1538	if [[ $no_submit = false ]]
	1539	then
[1099]	1540	rm -f $job_to_send
[1]	1541	fi
[1266]	1542	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |