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source: palm/trunk/SCRIPTS/subjob @ 1546

Last change on this file since 1546 was 1546, checked in by heinze, 9 years ago
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1	#!/bin/ksh
2
3	# subjob - script for automatic generation and submission of batch-job files
4	# for various batch queuing systems
5
6	#--------------------------------------------------------------------------------#
7	# This file is part of PALM.
8	#
9	# PALM is free software: you can redistribute it and/or modify it under the terms
10	# of the GNU General Public License as published by the Free Software Foundation,
11	# either version 3 of the License, or (at your option) any later version.
12	#
13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
16	#
17	# You should have received a copy of the GNU General Public License along with
18	# PALM. If not, see <http://www.gnu.org/licenses/>.
19	#
20	# Copyright 1997-2014 Leibniz Universitaet Hannover
21	#--------------------------------------------------------------------------------#
22	#
23	# Current revisions:
24	# ------------------
25	#
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: subjob 1546 2015-01-29 06:53:19Z heinze $
30	#
31	# 1545 2015-01-29 06:52:23Z heinze
32	# local host name for blizzard further specified
33	#
34	# 1480 2014-10-17 14:41:49Z raasch
35	# adjustments for 2nd stage of HLRNIII
36	#
37	# 1468 2014-09-24 14:06:57Z maronga
38	# Typo removed (addres->address)
39	# Adjustments for lcxe6
40	#
41	# 1452 2014-08-22 09:41:06Z heinze
42	# local hosts for blizzard added
43	#
44	# 1450 2014-08-21 07:31:51Z heinze
45	# HLRN-III (lccrayb): testq queue adjusted to mpp1testq
46	#
47	# 1442 2014-07-28 07:09:10Z raasch
48	# HLRN-III (lccrayb/lccrayh) queues adjusted
49	#
50	# 1378 2014-04-28 06:04:58Z raasch
51	# -et option added for lctit
52	#
53	# 1350 2014-04-04 13:01:30Z maronga
54	# location of qsub updated for lcxe6
55	#
56	# 1289 2014-03-04 07:12:34Z raasch
57	# German comments translated to English
58	# fimm-, necriam-, scirocco-, ibmy-, and sgi-specific code removed
59	#
60	# 1279 2014-01-28 12:10:14Z raasch
61	# node calculation modified due to changes in mrun (tasks_per_node must not be
62	# an integral divisor of numprocs any more)
63	#
64	# 1274 2014-01-09 13:14:54Z heinze
65	# adjustments for lccrayh
66	#
67	# 1266 2013-12-11 12:07:34Z heinze
68	# further adjustments for lccrayb (use msub instead of qsub)
69	#
70	# 1264 2013-12-09 12:46:09Z fricke
71	# Bugfix: Using number of nodes instead of number of processors (lccrayb)
72	#
73	# 1262 2013-12-09 10:57:20Z fricke
74	# further adjustments for lccrayb
75	#
76	# 1260 2013-12-04 12:48:04Z raasch
77	# jaboticaba admitted
78	#
79	# 1255 2013-11-07 14:43:35Z raasch
80	# further adjustments for lccrayb
81	#
82	# 1224 2013-09-16 07:27:23Z raasch
83	# first adjustments for lccrayb
84	#
85	# 1202 2013-07-10 16:22:07Z witha
86	# adjustments for Forwind cluster (lcflow)
87	#
88	# 1199 2013-07-05 14:52:22Z raasch
89	# adjustments for CSC Helsinki (lccrayf)
90	#
91	# use of cluster/express queue enabled (ibmh)
92	# vinessa added (imuk)
93	#
94	# 1103 2013-02-20 02:15:53Z raasch
95	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
96	# instead typeset -L/R),
97	# further adjustments for lckyuh
98	#
99	# 2013-02-10 01:47:43Z raasch
100	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
101	# and for Forwind cluster (lcflow)
102	#
103	# 1094 2013-02-03 01:52:12Z raasch
104	# new option -P for explicit setting of ssh/scp port,
105	# decalpha parts (yonsei) removed
106	#
107	# 2013-02-02 07:06:13Z raasch
108	# adjustments for Kyushu-University computing center (lckyut - tatara)
109	# old changelog messages removed
110	#
111	# 1046 2012-11-09 14:38:45Z maronga
112	# code put under GPL (PALM 3.9)
113	#
114	# 08/07/94 - Siggi - first version finished
115	# 29/06/94 - Siggi - script development started
116	#--------------------------------------------------------------------------------#
117	# subjob - script for automatic generation and submission of batch-job files
118	# for various batch queuing systems
119	#--------------------------------------------------------------------------------#
120
121
122	# VARIABLE-DECLARATIONS AND DEFAULT VALUES
123	delete_dayfile=false
124	email_notification=none
125	group_number=none
126	locat=normal
127	no_default_queue=none
128	no_submit=false
129	job_catalog="~/job_queue"
130	job_name=none
131	local_user=$LOGNAME
132	node_usage=shared
133	numprocs=0
134	punkte="..........................................................."
135	submcom=qsub
136	queue=default
137	remote_host=none
138	remote_user=""
139	verify=true
140
141	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
142	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
143
144
145
146	# ERROR HANDLING
147	# IN CASE OF EXIT:
148	trap 'if [[ $locat != normal ]]
149	then
150	case $locat in
151	(option) printf "\n --> available optios can be displayed"
152	printf " by typing:"
153	printf "\n \"subjob ?\" \n";;
154	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
155	(*) printf "\n +++ unknown error"
156	printf "\n please inform S. Raasch!\n"
157	esac
158	[[ -f $job_to_send ]] && rm $job_to_send
159	printf "\n\n+++ SUBJOB killed \n\n"
160	fi' exit
161
162
163	# IN CASE OF TERMINAL-BREAK:
164	trap '[[ -f $job_to_send ]] && rm $job_to_send
165	printf "\n\n+++ SUBJOB killed \n\n"
166	exit
167	' 2
168
169
170
171
172	# DETERMINE NAME OF LOCAL HOST
173	local_host=$(hostname)
174
175
176
177	# SET HOST-SPECIFIC VARIABLES VEREINBAREN (CHECK, IF LOCAL HOST
178	# IS ADMITTED AT ALL)
179	# NOTE: ONE OF THE ENTRIES FOR "lck" OR "lckordi" ALWAYS HAS TO BE
180	# COMMENT OUT, BECAUSE THE HOSTNAME (node*) IS SAME FOR BOTH MACHINES
181	case $local_host in
182	(ambiel-lx) local_address=134.106.74.48; local_host=lcfor;;
183	(atmos) local_address=172.20.25.35; local_host=lcide;;
184	(austru) local_address=130.75.105.128; local_host=lcmuk;;
185	(autan) local_address=130.75.105.57; local_host=lcmuk;;
186	(bora) local_address=130.75.105.103; local_host=lcmuk;;
187	(b04*) local_address=133.5.4.33; local_host=lckyuh;;
188	(blizzard1\|p0\|p1\|p2\|p3\|p4\|p5\|p6\|p7\|p8\|p9) local_address=136.172.40.15; local_host=ibmh;;
189	(blizzard2\|p0\|p1\|p2\|p3\|p4\|p5\|p6\|p7\|p8\|p9) local_address=136.172.40.16; local_host=ibmh;;
190	(blogin\|bxc) local_address=130.73.233.1; local_host=lccrayb;;
191	(hlogin\|hxc) local_address=130.75.4.1; local_host=lccrayh;;
192	(breva) local_address=130.75.105.98; local_host=lcmuk;;
193	(buran) local_address=130.75.105.58; local_host=lcmuk;;
194	(caurus) local_address=130.75.105.19; local_host=lcmuk;;
195	(climate*) local_address=165.132.26.68; local_host=lcyon;;
196	(clogin*) local_address=86.50.166.21; local_host=lccrayf;;
197	(cs*) local_address=136.172.44.131; local_host=nech;;
198	(elephanta) local_address=130.75.105.6; local_host=lcmuk;;
199	(flow01) local_address=10.141.255.71; local_host=lcflow;;
200	(flow02) local_address=10.141.255.72; local_host=lcflow;;
201	(node*) local_address=165.132.26.61 local_host=lck;;
202	# (node*) local_address=210.219.61.8 local_host=lckordi;;
203	(gaia*) local_address=150.183.146.24; local_host=ibmkisti;;
204	(gallego) local_address=130.75.105.10; local_host=lcmuk;;
205	(gregale) local_address=130.75.105.109; local_host=lcmuk;;
206	(hababai) local_address=130.75.105.108; local_host=lcmuk;;
207	(hayaka*) local_address=133.5.4.33; local_host=lckyuh;;
208	(hexagon.bccs.uib.no) local_address=129.177.20.113; local_host=lcxe6;;
209	(hx*) local_address=133.3.51.11; local_host=lckyoto;;
210	(inferno) local_address=130.75.105.5; local_host=lcmuk;;
211	(irifi) local_address=130.75.105.104; local_host=lcmuk;;
212	(jaboticaba) local_address=150.163.25.181; local_host=lcbr;;
213	(sno) local_address=130.75.105.113; local_host=lcmuk;;
214	(levanto) local_address=130.75.105.45; local_host=lcmuk;;
215	(login*) local_address=118.128.66.223; local_host=lckiaps;;
216	(maestro) local_address=130.75.105.2; local_host=lcmuk;;
217	(meller) local_address=134.106.74.155; local_host=lcfor;;
218	(meteo-login*) local_address=193.166.211.144;local_host=lcxt5m;;
219	(hexagon*) local_address=129.177.20.113; local_host=lcxe6;;
220	(nobel*) local_address=150.183.5.101; local_host=ibms;;
221	(orkan) local_address=130.75.105.3; local_host=lcmuk;;
222	(ostria) local_address=130.75.105.106; local_host=lcmuk;;
223	(paesano) local_address=130.75.105.46; local_host=lcmuk;;
224	(pcj*) local_address=172.31.120.1; local_host=lckyut;;
225	(pingui) local_address=134.106.74.118; local_host=lcfor;;
226	(quanero) local_address=130.75.105.107; local_host=lcmuk;;
227	(rte*) local_address=133.5.185.60; local_host=lcrte;;
228	(shiokaze-lx) local_address=134.106.74.123; local_host=lcfor;;
229	(sisu-login*) local_address=86.50.166.21; local_host=lccrayf;;
230	(solano) local_address=130.75.105.110; local_host=lcmuk;;
231	(sugoka*) local_address=172.31.120.1; local_host=lckyut;;
232	(t2a*) local_address=10.1.6.165; local_host=lctit;;
233	(urban*) local_address=147.46.30.151 local_host=lcsb;;
234	(vinessa) local_address=130.75.105.112; local_host=lcmuk;;
235	(vorias) local_address=172.20.25.43; local_host=lcmuk;;
236	(*.cc.kyushu-u.ac.jp) local_address=133.5.4.129; local_host=ibmku;;
237	(*) printf "\n +++ \"$local_host\" unknown";
238	printf "\n please contact the PALM group at IMUK";
239	locat=parameter; exit;;
240	esac
241
242
243
244	# BY DEFAULT, THE REMOTE HOST IS THE LOCAL HOST
245	remote_host=$local_host
246
247
248
249
250	# READ THE SHELLSCRIPT-OPTIONS
251	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
252	do
253	case $option in
254	(c) job_catalog=$OPTARG;;
255	(d) delete_dayfile=true;;
256	(D) no_submit=true;;
257	(e) email_notification=$OPTARG;;
258	(g) group_number=$OPTARG;;
259	(h) remote_host=$OPTARG;;
260	(m) memory=$OPTARG;;
261	(n) job_name=$OPTARG;;
262	(N) node_usage=$OPTARG;;
263	(O) threads_per_task=$OPTARG;;
264	(P) scp_port=$OPTARG;;
265	(q) no_default_queue=$OPTARG;;
266	(t) cputime=$OPTARG;;
267	(T) tasks_per_node=$OPTARG;;
268	(u) remote_user=$OPTARG;;
269	(v) verify=false;;
270	(X) numprocs=$OPTARG;;
271	(\?) printf "\n +++ Option $OPTARG unknown \n";
272	locat=option; exit;;
273	esac
274	done
275
276
277	# GET THE NAME OF THE JOBFILE AS NEXT ARGUMENT
278	(( to_shift = $OPTIND - 1 ))
279	shift $to_shift; file_to_send=$1
280
281
282	# OUTPUT OF SHORT DESCRIPTION OF SCRIPT-OPTIONS
283	if [ "$1" = "?" ]
284	then
285	(printf "\n *** subjob can be called as follows:\n"
286	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
287	printf "\n Description of available options:\n"
288	printf "\n Option Description Default-Value"
289	printf "\n -c job-input- and output-catalog ~/job_queue"
290	printf "\n -d no job-protocol will be created ---"
291	printf "\n -D only the job-file will be created ---"
292	printf "\n -h execution host, available hosts: $remote_host"
293	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, lc...,"
294	printf "\n lckiaps, lctit, nech"
295	printf "\n -m memory demand per process in MByte ---"
296	printf "\n -n jobname <jobdatei>"
297	printf "\n -O threads per task (for OpenMP usage) 1"
298	printf "\n -P ssh/scp port default port"
299	printf "\n -q job-queue to be used default"
300	printf "\n -t allowed cpu-time in seconds ---"
301	printf "\n -T tasks per node (on parallel hosts) ---"
302	printf "\n -u username on execution host from .netrc"
303	printf "\n -v no prompt for confirmation ---"
304	printf "\n -X # of processors (on parallel hosts) 1"
305	printf "\n "
306	printf "\n The only possible positional parameter is <jobfile>:"
307	printf "\n The complete NQS-job must be provided here."
308	printf "\n <jobfile>=? creates this outline\n\n") \| more
309	exit
310	fi
311
312
313
314	# CHECK, IF JOB-FILE HAS BEEN GIVEN AS ARGUMENT AND IF THE FILE ITSELF EXISTS
315	if [[ "$file_to_send" = "" ]]
316	then
317	printf "\n +++ job-file missing"
318	locat=parameter; exit
319	else
320	if [[ -f $file_to_send ]]
321	then
322	true
323	else
324	printf "\n +++ job-file: "
325	printf "\n $file_to_send"
326	printf "\n does not exist"
327	locat=parameter; exit
328	fi
329	fi
330
331
332
333	# IF NO JOBNAME HAS BEEN GIVEN, JOBNAME IS SET TO THE NAME OF THE JOB-FILE,
334	# PROVIDED THAT THE JOB-FILE NAME DOES NOT CONTAIN ANY PATH
335	if [[ $job_name = none ]]
336	then
337	job_name=$file_to_send
338	fi
339	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
340	then
341	printf "\n +++ job-file name: "
342	printf "\n $job_name"
343	printf "\n must not contain \"/\"-characters"
344	locat=parameter; exit
345	fi
346
347
348
349
350	# SET HOST-SPECIFIC QUANTITIES, OR TERMINATE IN CASE OF UNKNOWN HOST,
351	# OR IF NO HOST HAS BEEN GIVEN
352	if [[ $remote_host = none ]]
353	then
354	printf "\n +++ host missing"
355	locat=option; exit
356	else
357	case $remote_host in
358	(ibm) queue=p690_standard; remote_address=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
359	(ibmh) queue=cluster; remote_address=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
360	(ibmkisti) queue=class.32plus; remote_address=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
361	(ibmku) queue=s4; remote_address=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
362	(ibms) queue=p_normal; remote_address=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
363	(lccrayb) queue=mpp1testq; remote_address=130.73.233.1; submcom=/opt/moab/default/bin/msub;;
364	(lccrayh) queue=mpp1testq; remote_address=130.75.4.1; submcom=/opt/moab/default/bin/msub;;
365	(lccrayf) queue=small; remote_address=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
366	(lcflow) remote_address=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;;
367	(lckyoto) remote_address=133.3.51.11; submcom=/thin/local/bin/qsub;;
368	(lck) remote_address=165.132.26.61; submcom=/usr/torque/bin/qsub;;
369	(lckiaps) remote_address=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
370	(lckordi) remote_address=210.219.61.8; submcom=/usr/torque/bin/qsub;;
371	(lckyuh) remote_address=133.5.4.33; submcom=/usr/bin/pjsub;;
372	(lckyut) remote_address=133.5.4.37; submcom=/usr/bin/pjsub;;
373	(lcsb) remote_address=147.46.30.151; submcom=/usr/torque/bin/qsub;;
374	(lctit) queue=S; remote_address=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
375	(lcxe6) remote_address=129.177.20.113; submcom=/opt/torque/default/bin/qsub;;
376	(lcxt5m) remote_address=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
377	(lcyon) remote_address=165.132.26.68; submcom=/usr/torque/bin/qsub;;
378	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_address=136.172.44.147; submcom="/usr/local/bin/qsub";;
379	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
380	locat=parameter; exit;;
381	esac
382	fi
383
384
385	# CHECK, IF A VALID QUEUE HAS BEEN GIVEN
386	if [[ $no_default_queue != none ]]
387	then
388	error=false
389	ndq=$no_default_queue
390	case $remote_host in
391	(ibm) case $ndq in
392	(p690_express\|p690_standard\|p690_long) error=false;;
393	(*) error=true;;
394	esac;;
395	(ibmh) case $ndq in
396	(cluster\|express) error=false;;
397	(*) error=true;;
398	esac;;
399	(ibmkisti) case $ndq in
400	(class.32plus\|class.1-2\|class.2-32) error=false;;
401	(*) error=true;;
402	esac;;
403	(ibmku) case $ndq in
404	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
405	(*) error=true;;
406	esac;;
407	(ibms) case $ndq in
408	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
409	(*) error=true;;
410	esac;;
411	(lccrayb) case $ndq in
412	(dataq\|mpp1q\|mpp1testq\|mpp2q\|mpp2testq\|smp1q\|smp1testq\|specialm1q) error=false;;
413	(*) error=true;;
414	esac;;
415	(lccrayh) case $ndq in
416	(dataq\|mpp1q\|mpp1testq\|smp1q\|smp1testq\|specialm1q) error=false;;
417	(*) error=true;;
418	esac;;
419	(lccrayf) case $ndq in
420	(usup\|test*\|small\|large) error=false;;
421	(*) error=true;;
422	esac;;
423	(lcflow) case $ndq in
424	(cfd_lom_long.q\|cfd_him_long.q\|cfd_lom_serl.q\|cfd_lom_shrt.q\|cfd_him_shrt.q) error=false;;
425	(*) error=true;;
426	esac;;
427	(lckiaps) case $ndq in
428	(express\|normal) error=false;;
429	(*) error=true;;
430	esac;;
431	(lckyoto) case $ndq in
432	(eh\|ph) error=false;;
433	(*) error=true;;
434	esac;;
435	(lckyuh) case $ndq in
436	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
437	(*) error=true;;
438	esac;;
439	(lckyut) case $ndq in
440	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
441	(*) error=true;;
442	esac;;
443	(lctit) case $ndq in
444	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
445	(*) error=true;;
446	esac;;
447	(t3eb) case $ndq in
448	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
449	(*) error=true;;
450	esac;;
451	(t3eh) case $ndq in
452	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
453	(*) error=true;;
454	esac;;
455	(t3ej2\|t3ej5) case $ndq in
456	(low\|normal\|high) error=false;;
457	(*) error=true;;
458	esac;;
459	(t3es) case $ndq in
460	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
461	(*) error=true;;
462	esac;;
463	esac
464	if [[ $error = true ]]
465	then
466	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
467	locat=parameter; exit
468	else
469	queue=$no_default_queue
470	fi
471	fi
472
473
474
475	# CHECK THE CPU-TIME
476	# SPLIT TIME INTO HOURS, MINUTES, AND SECONDS
477	done=false
478	while [[ $done = false ]]
479	do
480	if (( $cputime <= 0 ))
481	then
482	printf "\n +++ wrong cpu-time or cpu-time missing"
483	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
484	printf "\n >>> "
485	read cputime 1>/dev/null 2>&1
486	else
487	done=true
488	fi
489	done
490	if [[ $remote_host = nech ]]
491	then
492	if (( tasks_per_node != 0 ))
493	then
494	(( cputime = cputime * tasks_per_node ))
495	elif [[ $numprocs != 0 ]]
496	then
497	(( cputime = cputime * numprocs ))
498	fi
499	fi
500	(( stunden = cputime / 3600 ))
501	(( resttime = cputime - stunden * 3600 ))
502	(( minuten = resttime / 60 ))
503	(( sekunden = resttime - minuten * 60 ))
504	timestring=${stunden}:${minuten}:${sekunden}
505
506
507
508	# CHECK THE MEMORY DEMAND
509	done=false
510	while [[ $done = false ]]
511	do
512	if (( memory <= 0 ))
513	then
514	printf "\n +++ wrong memory demand or memory demand missing"
515	printf "\n >>> Please type memory in MByte per process as INTEGER:"
516	printf "\n >>> "
517	read memory 1>/dev/null 2>&1
518	else
519	done=true
520	fi
521	done
522
523	if [[ $remote_host = nech ]]
524	then
525	if (( tasks_per_node != 0 ))
526	then
527	(( Memory = memory * tasks_per_node / 1000 ))
528	elif [[ $numprocs != 0 ]]
529	then
530	(( Memory = memory * numprocs / 1000 ))
531	else
532	(( Memory = memory / 1000 ))
533	fi
534	elif [[ $remote_host = lctit ]]
535	then
536	(( Memory = memory * tasks_per_node / 1000 ))
537	fi
538
539
540	# MEMORY DEMAND IN CASE OF OPENMP-USAGE ON IBM-SYSTEMS
541	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
542	then
543	(( memory = memory * threads_per_task ))
544	fi
545
546
547	# CALCULATE NUMBER OF REQUIRED NODES
548	if (( tasks_per_node != 0 ))
549	then
550	(( nodes = ( numprocs - 1 ) / ( tasks_per_node * threads_per_task ) + 1 ))
551	fi
552
553
554	# CALCULATE NUMBER OF PROCESSES PER NODE
555	(( processes_per_node = tasks_per_node * threads_per_task ))
556
557
558	# CALCULATE NUMBER OF MPI TASKS
559	(( mpi_tasks = numprocs / threads_per_task ))
560
561
562	# SET PORT NUMBER OPTION FOR CALLS OF ssh/scp, subjob AND batch_scp SCRIPTS
563	if [[ "$scp_port" != "" ]]
564	then
565	PORTOPT="-P $scp_port"
566	SSH_PORTOPT="-p $scp_port"
567	fi
568
569
570	# HEADER-OUTPUT
571	if [[ $verify = true ]]
572	then
573	printf "\n\n"
574	printf "#--------------------------------------------------------------# \n"
575	spalte1=SUBJOB;spalte2=$(date)
576	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
577	printf "\| \| \n"
578	printf "\| values of parameters/options: \| \n"
579	spalte1=$(echo local_host$punkte \| cut -c-20)
580	spalte2=$punkte$local_host
581	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
582	spalte1=$(echo remote_host$punkte \| cut -c-20)
583	spalte2=$punkte$remote_host
584	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
585	spalte1=$(echo queue$punkte \| cut -c-20)
586	spalte2=$punkte$queue
587	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
588	spalte1=$(echo memory$punkte \| cut -c-20)
589	spalte2="$punkte$memory mb"
590	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
591	spalte1=$(echo cputime$punkte \| cut -c-20)
592	spalte2="$punkte$cputime sec"
593	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
594	spalte1=$(echo job_name$punkte \| cut -c-20)
595	spalte2="$punkte$job_name"
596	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
597	printf "#--------------------------------------------------------------# \n\n"
598
599
600	# QUERY CHECK
601	antwort="dummy"
602	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
603	do
604	read antwort?" >>> continue (y/n) ? "
605	done
606	if [[ $antwort = n \|\| $antwort = N ]]
607	then
608	locat=verify; exit
609	fi
610	printf "\n"
611	fi
612
613
614
615	# GENERATE RANDOM IDENTIFIER, AND DETERMINE THE JOBNAME ON THE TARGET HOST
616	identifier=$RANDOM
617	job_on_remhost=${job_name}_${identifier}_$local_host
618	job_to_send=job_to_send_$identifier
619	if [[ $delete_dayfile = false ]]
620	then
621	remote_dayfile=${local_host}_${job_name}_result_$identifier
622	local_dayfile=${remote_host}_${job_name}
623	else
624	remote_dayfile=/dev/null
625	fi
626
627
628
629	# GENERATE THE BATCH-JOB SCRIPTS (FOR QUEUEING-SYSTEMS qsub/msub/LoadLeveler)
630	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
631	then
632
633	# GENERAL LOADLEVELER SETTINGS
634	execute_in_shell="#!/bin/ksh"
635	use_shell="# @ shell = /bin/ksh"
636	consumable_memory="ConsumableMemory($memory mb)"
637	class="# @ class = $queue"
638	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
639	network_to_use="# @ network.mpi = sn_all,shared,us"
640	data_limit="# @ data_limit = 1.76gb"
641	image_size="# @ image_size = 50"
642	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
643
644	if [[ $email_notification = none ]]
645	then
646	notify_user=""
647	else
648	notify_user="# @ notify_user = $email_notification"
649	if [[ $delete_dayfile = true ]]
650	then
651	notification='# @ notification = never'
652	fi
653	fi
654
655	if [[ $remote_host = ibmh ]]
656	then
657	data_limit=""
658	network_to_use=""
659	class="# @ class = $queue"
660	environment=""
661	rset="# @ rset = RSET_MCM_AFFINITY"
662	task_affinity="# @ task_affinity = core(1)"
663	elif [[ $remote_host = ibmkisti ]]
664	then
665	network_to_use="# @ network.MPI = sn_all,shared,US"
666	wall_clock_limit="# @ wall_clock_limit = $timestring"
667	if [[ $threads_per_task = 1 ]]
668	then
669	rset="# @ rset = RSET_MCM_AFFINITY"
670	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
671	fi
672	environment=""
673	use_shell=""
674	data_limit=""
675	image_size=""
676	elif [[ $remote_host = ibmku ]]
677	then
678	execute_in_shell="#!/usr/bin/ksh"
679	use_shell="# @ shell = /usr/bin/ksh"
680	consumable_memory=""
681	environment=""
682	network_to_use="# @ network.mpi = sn_all,shared,us"
683	data_limit=""
684	image_size=""
685	elif [[ $remote_host = ibms ]]
686	then
687	network_to_use="# @ network.mpi = csss,shared,us"
688	fi
689
690	cat > $job_to_send << %%END%%
691	$execute_in_shell
692	$use_shell
693
694	# @ job_type = parallel
695	# @ job_name = $job_name
696	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
697	# @ output = $remote_dayfile
698	# @ error = $remote_dayfile
699	$wall_clock_limit
700	$image_size
701	$class
702	$environment
703	$network_to_use
704	$data_limit
705	$rset
706	$mcm_affinity_options
707	$task_affinity
708	$notification
709	$notify_user
710
711	%%END%%
712
713	if (( nodes > 0 ))
714	then
715
716	if [[ $remote_host != ibmkisti ]]
717	then
718
719	cat >> $job_to_send << %%END%%
720	# @ node = $nodes
721	# @ tasks_per_node = $processes_per_node
722	# @ node_usage = $node_usage
723	# @ queue
724
725	%%END%%
726
727	else
728
729	cat >> $job_to_send << %%END%%
730	# @ total_tasks = $mpi_tasks
731	# @ blocking = unlimited
732	# @ queue
733
734	%%END%%
735
736	fi
737
738	else
739
740	cat >> $job_to_send << %%END%%
741	# @ blocking = unlimited
742	# @ total_tasks = $numprocs
743	# @ node_usage = $node_usage
744	# @ queue
745
746	%%END%%
747
748	fi
749
750	# WORKAROUND BECAUSE OF SILLY JOB FILTER ON ibmkisti
751	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
752	then
753	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
754	fi
755
756	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
757	then
758
759	cat > $job_to_send << %%END%%
760	#!/bin/ksh
761
762	# @ job_type = serial
763	# @ node_usage = $node_usage
764	# @ job_name = palm
765	# @ wall_clock_limit = ${timestring},$timestring
766	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
767	# @ output = $remote_dayfile
768	# @ error = $remote_dayfile
769	$class
770	$notification
771
772	# @ queue
773
774	%%END%%
775
776	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
777	then
778
779	if [[ "$feature" != "" ]]
780	then
781	featuredir="#PBS -l feature=$feature"
782	fi
783
784	if [[ $numprocs != 0 ]]
785	then
786	cat > $job_to_send << %%END%%
787	#!/bin/bash
788	#PBS -N $job_name
789	#PBS -l walltime=$timestring
790	#PBS -l nodes=$nodes:ppn=$processes_per_node
791	#PBS -o $remote_dayfile
792	#PBS -j oe
793	#PBS -q $queue
794	$featuredir
795
796	$module_calls
797
798	%%END%%
799
800	else
801
802	continue
803
804	fi
805
806	elif [[ $remote_host = lccrayf ]]
807	then
808
809	if [[ $numprocs != 0 ]]
810	then
811	cat > $job_to_send << %%END%%
812	#!/bin/bash -l
813	#SBATCH -J $job_name
814	#SBATCH -t $timestring
815	#SBATCH -N $nodes
816	#SBATCH --ntasks-per-node=$processes_per_node
817	#SBATCH -p $queue
818	#SBATCH -o $remote_dayfile
819	#SBATCH -e $remote_dayfile
820
821	$init_cmds
822	$module_calls
823
824	%%END%%
825
826	else
827	cat > $job_to_send << %%END%%
828	#!/bin/bash -l
829	#SBATCH -J $job_name
830	#SBATCH -t $timestring
831	#SBATCH -l ncpus=1
832	#SBATCH -l pmem=${memory}mb
833	#SBATCH -m abe
834	#SBATCH -o $remote_dayfile
835	#SBATCH -e $remote_dayfile
836
837	$init_cmds
838	$module_calls
839
840	%%END%%
841
842	fi
843
844	elif [[ $remote_host = lcflow ]]
845	then
846	if [ $memory -gt 1800 ]; then
847	use_himem=""
848	else
849	use_himem="#"
850	fi
851	if [[ $numprocs != 0 ]]
852	then
853	pe_set="#$ -pe impi41 $numprocs"
854	else
855	pe_set="#$ -pe impi41 1"
856	fi
857	if [[ $queue = default ]]
858	then
859	queue_set=""
860	else
861	queue_set="#$ -q $queue"
862	fi
863	[[ "$disc_space" = "" ]] && disc_space=50
864
865	cat > $job_to_send << %%END%%
866	#!/bin/bash
867	#$ -S /bin/bash
868	#$ -N $job_name
869	#$ -cwd
870	#$ -l h_rt=$timestring
871	#$ -l h_vmem=${memory}M
872	#$ -o $remote_dayfile
873	#$ -j y
874	$pe_set
875	#$ -R y
876	${use_himem}#$ -l highmem=true
877	#$ -l h_fsize=${disc_space}G
878	$queue_set
879
880	%%END%%
881
882	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
883	then
884
885	if [[ $numprocs != 0 ]]
886	then
887	cat > $job_to_send << %%END%%
888	#!/bin/ksh
889	#PBS -N $job_name
890	#PBS -l walltime=$timestring
891	#PBS -l ncpus=$numprocs
892	#PBS -l pmem=${memory}mb
893	#PBS -o $remote_dayfile
894	#PBS -l nodes=$nodes:ppn=${processes_per_node}
895	#PBS -j oe
896
897	mpd &
898
899	%%END%%
900
901	else
902	cat > $job_to_send << %%END%%
903	#!/bin/ksh
904	#PBS -N $job_name
905	#PBS -l walltime=$timestring
906	#PBS -l ncpus=1
907	#PBS -l pmem=${memory}mb
908	#PBS -o $remote_dayfile
909	#PBS -j oe
910
911	%%END%%
912
913	fi
914
915	elif [[ $remote_host = lckiaps ]]
916	then
917
918	if [[ $numprocs != 0 ]]
919	then
920	cat > $job_to_send << %%END%%
921	#!/bin/ksh
922	#PBS -N $job_name
923	#PBS -l walltime=$timestring
924	#PBS -l select=1:ncpus=$numprocs
925	#PBS -l pmem=${memory}mb
926	#PBS -q $queue
927	#PBS -o $remote_dayfile
928	#PBS -j oe
929	#PBS -V
930
931	%%END%%
932
933	else
934	cat > $job_to_send << %%END%%
935	#!/bin/ksh
936	#PBS -N $job_name
937	#PBS -l walltime=$timestring
938	#PBS -l ncpus=1
939	#PBS -l pmem=${memory}mb
940	#PBS -o $remote_dayfile
941	#PBS -j oe
942
943	%%END%%
944
945	fi
946
947	elif [[ $remote_host = lcyon ]]
948	then
949
950	if [[ $numprocs != 0 ]]
951	then
952	cat > $job_to_send << %%END%%
953	#!/bin/ksh
954	#PBS -N $job_name
955	#PBS -l walltime=$timestring
956	#PBS -l ncpus=$numprocs
957	#PBS -l pmem=${memory}mb
958	#PBS -o $remote_dayfile
959	#PBS -j oe
960
961	%%END%%
962
963	else
964	cat > $job_to_send << %%END%%
965	#!/bin/ksh
966	#PBS -N $job_name
967	#PBS -l walltime=$timestring
968	#PBS -l ncpus=1
969	#PBS -l pmem=${memory}mb
970	#PBS -o $remote_dayfile
971	#PBS -j oe
972
973	%%END%%
974
975	fi
976
977	elif [[ $remote_host = lcxe6 ]]
978	then
979
980	if [[ $numprocs != 0 ]]
981	then
982	cat > $job_to_send << %%END%%
983	#!/bin/ksh
984	#PBS -S /bin/ksh
985	#PBS -N $job_name
986	#PBS -A $project_account
987	#PBS -j oe
988	#PBS -l walltime=$timestring
989	#PBS -l mppwidth=${numprocs}
990	#PBS -l mppnppn=${processes_per_node}
991	#PBS -m abe
992	#PBS -o $remote_dayfile
993	$email_directive
994
995	$init_cmds
996	$module_calls
997
998	%%END%%
999
1000	else
1001	cat > $job_to_send << %%END%%
1002	#!/bin/ksh
1003	#PBS -S /bin/ksh
1004	#PBS -N $job_name
1005	#PBS -A $project_account
1006	#PBS -j oe
1007	#PBS -l walltime=$timestring
1008	#PBS -l ncpus=1
1009	#PBS -l pmem=${memory}mb
1010	#PBS -m abe
1011	$email_directive
1012	#PBS -o $remote_dayfile
1013
1014	$init_cmds
1015	$module_calls
1016
1017	%%END%%
1018
1019	fi
1020
1021	elif [[ $remote_host = lckyoto ]]
1022	then
1023
1024	cat > $job_to_send << %%END%%
1025	#!/bin/ksh
1026	# @\$-o $remote_dayfile
1027	# @\$-eo -oi
1028	# @\$-lP 16
1029	# @\$-lp 1
1030	# @\$-lm 28gb -llm unlimited -ls unlimited
1031	# @\$-q $queue
1032	# @\$-Pvn abs_pack
1033	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
1034	#. /thin/local/etc/setprofile/intel-11.0.sh
1035	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
1036	. ~/.myprofile
1037	#. /home2/t/t51254/palm/current_version/myprofile
1038	#. /thin/apps/pgi/mpi.sh
1039	#
1040	env
1041	#
1042	set -x
1043
1044	%%END%%
1045
1046	elif [[ $remote_host = lcxt5m ]]
1047	then
1048
1049	if [[ $numprocs != 0 ]]
1050	then
1051	cat > $job_to_send << %%END%%
1052	#!/bin/ksh
1053	#PBS -S /bin/ksh
1054	#PBS -N $job_name
1055	#PBS -j oe
1056	#PBS -l walltime=$timestring
1057	#PBS -l mppwidth=${numprocs}
1058	#PBS -l mppnppn=${processes_per_node}
1059	#PBS -m abe
1060	#PBS -o $remote_dayfile
1061
1062	$init_cmds
1063	$module_calls
1064
1065	%%END%%
1066
1067	else
1068	cat > $job_to_send << %%END%%
1069	#!/bin/ksh
1070	#PBS -S /bin/ksh
1071	#PBS -N $job_name
1072	#PBS -j oe
1073	#PBS -l walltime=$timestring
1074	#PBS -l ncpus=1
1075	#PBS -l pmem=${memory}mb
1076	#PBS -m abe
1077	#PBS -o $remote_dayfile
1078
1079	$init_cmds
1080	$module_calls
1081
1082	%%END%%
1083
1084	fi
1085
1086	elif [[ $remote_host = lckyuh ]]
1087	then
1088	cat > $job_to_send << %%END%%
1089	#!/bin/bash
1090	#PJM -L "rscgrp=$queue"
1091	#PJM -L "node=$nodes"
1092	#PJM --mpi "proc=$numprocs"
1093	#PJM -L "elapse=$timestring"
1094	#PJM -o $remote_dayfile
1095	#PJM -j
1096	#PJM -X
1097	#PJM --no-stging
1098
1099	export LANG=en_US.UTF-8
1100	%%END%%
1101
1102	elif [[ $remote_host = lckyut ]]
1103	then
1104	cat > $job_to_send << %%END%%
1105	#!/bin/bash
1106	#PJM -L "rscgrp=$queue"
1107	#PJM -L "vnode=$numprocs"
1108	#PJM -L "vnode-core=1"
1109	#PJM -L "elapse=$timestring"
1110	#PJM --mpi proc=$numprocs
1111	#PJM -o $remote_dayfile
1112	#PJM -j
1113	#PJM -X
1114	#PJM --no-stging
1115
1116	export LANG=en_US.UTF-8
1117	%%END%%
1118
1119	elif [[ $remote_host = nech ]]
1120	then
1121
1122	if (( nodes > 1 ))
1123	then
1124	cat > $job_to_send << %%END%%
1125	#!/bin/ksh
1126	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1127	#PBS -l ${qsubmem}=${Memory}gb
1128	#PBS -b $nodes
1129	#PBS -o $remote_dayfile
1130	#PBS -N palm
1131	#PBS -j o
1132	#PBS -T mpisx
1133
1134	%%END%%
1135
1136	elif [[ $numprocs != 0 ]]
1137	then
1138	cat > $job_to_send << %%END%%
1139	#!/bin/ksh
1140	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1141	#PBS -l ${qsubmem}=${Memory}gb
1142	#PBS -o $remote_dayfile
1143	#PBS -N palm
1144	#PBS -j o
1145
1146	%%END%%
1147
1148	else
1149	cat > $job_to_send << %%END%%
1150	#!/bin/ksh
1151	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1152	#PBS -o $remote_dayfile
1153	#PBS -j o
1154
1155	%%END%%
1156
1157	fi
1158
1159	elif [[ $remote_host = lctit ]]
1160	then
1161	cat > $job_to_send << %%END%%
1162	#!/bin/ksh
1163	$init_cmds
1164	$module_calls
1165
1166	%%END%%
1167
1168	# SET OPTIONS FOR SUBMIT-COMMAND
1169	if [[ $tasks_per_node != $processes_per_node ]]
1170	then
1171	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -et 1 -q $queue "
1172	else
1173	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -et 1 -q $queue "
1174	fi
1175
1176	else
1177
1178	cat > $job_to_send << %%END%%
1179	# @\$-q ${queue}
1180	# @\$-l${qsubtime} $timestring
1181	# @\$-l${qsubmem} ${memory}mb
1182	# @\$-o $remote_dayfile
1183	# @\$-eo
1184
1185	%%END%%
1186
1187	fi
1188
1189
1190	# IN CASE OF JOBS EXECUTING ON REMOTE-HOSTS, THE TRANSFER OF THE DAYFILES
1191	# TO THE LOCAL HOSTS WILL BE INITIATED BY TRAP ON EXIT
1192	# NO TRANSFER POSSIBLE ON IBM IN SEOUL
1193	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1194	then
1195	echo "set +vx" >> $job_to_send
1196	echo "trap '" >> $job_to_send
1197	echo "set +vx" >> $job_to_send
1198	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $remote_host = lccrayb \|\| $remote_host = lccrayh \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lcflow \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* \|\| $remote_host = lcxe6 ]]
1199	then
1200	if [[ $remote_host = ibmh ]]
1201	then
1202	return_queue=c1
1203	elif [[ $remote_host = ibmkisti ]]
1204	then
1205	return_queue=class.1-2
1206	elif [[ $remote_host = ibmku ]]
1207	then
1208	return_queue=sdbg2
1209	elif [[ $remote_host = ibms ]]
1210	then
1211	return_queue=p_normal
1212	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1213	then
1214	return_queue=dataq
1215	elif [[ $remote_host = lcxe6 ]]
1216	then
1217	return_queue=debug
1218	elif [[ $remote_host = lckiaps ]]
1219	then
1220	return_queue=express
1221	elif [[ $remote_host = lckyuh ]]
1222	then
1223	return_queue=cx-single
1224	elif [[ $remote_host = lckyut ]]
1225	then
1226	return_queue=cx-single
1227	else
1228	return_queue=unknown
1229	fi
1230
1231	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1232	then
1233
1234	if [[ $remote_host = ibmku ]]
1235	then
1236	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1237	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1238	else
1239	echo "echo \"#!/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1240	fi
1241	echo "echo \"# @ job_type = serial\" >> scpjob.$identifier" >> $job_to_send
1242	echo "echo \"# @ job_name = transfer\" >> scpjob.$identifier" >> $job_to_send
1243	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$identifier" >> $job_to_send
1244	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$identifier " >> $job_to_send
1245	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1246	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1247	if [[ $host != "ibmh" ]]
1248	then
1249	echo "echo \"# @ class = $return_queue\" >> scpjob.$identifier" >> $job_to_send
1250	fi
1251	echo "echo \"# @ image_size = 10\" >> scpjob.$identifier" >> $job_to_send
1252	echo "echo \"# @ notification = never\" >> scpjob.$identifier" >> $job_to_send
1253
1254	echo "echo \"# @ queue\" >> scpjob.$identifier" >> $job_to_send
1255	echo "echo \" \" >> scpjob.$identifier" >> $job_to_send
1256
1257	echo "echo \"set -x\" >> scpjob.$identifier" >> $job_to_send
1258	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$identifier" >> $job_to_send
1259	if [[ $remote_host = ibmku ]]
1260	then
1261	echo "echo \"rm scpjob.$identifier\" >> scpjob.$identifier" >> $job_to_send
1262	fi
1263	echo "echo \"exit\" >> scpjob.$identifier" >> $job_to_send
1264
1265	elif [[ $remote_host = nech ]]
1266	then
1267	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1268	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1269	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1270	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1271	echo "#PBS -j o" >> $job_to_send
1272	echo " " >> $job_to_send
1273	echo "set -x" >> $job_to_send
1274	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1275	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1276	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1277	echo "%%END%%" >> $job_to_send
1278
1279	elif [[ $remote_host = lckyuh ]]
1280	then
1281	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1282	echo "#!/bin/bash" >> $job_to_send
1283	echo "#PJM -L \"node=1\"" >> $job_to_send
1284	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1285	echo "#PJM --no-stging" >> $job_to_send
1286	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1287	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1288	echo "#PJM -j" >> $job_to_send
1289	echo " " >> $job_to_send
1290	echo "export LANG=en_US.UTF-8" >> $job_to_send
1291	echo "set -x" >> $job_to_send
1292	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1293	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1294	echo "%%END%%" >> $job_to_send
1295
1296	elif [[ $remote_host = lckyut ]]
1297	then
1298	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1299	echo "#!/bin/bash" >> $job_to_send
1300	echo "#PJM -L \"vnode=1\"" >> $job_to_send
1301	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1302	echo "#PJM --no-stging" >> $job_to_send
1303	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1304	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1305	echo "#PJM -j" >> $job_to_send
1306	echo " " >> $job_to_send
1307	echo "export LANG=en_US.UTF-8" >> $job_to_send
1308	echo "set -x" >> $job_to_send
1309	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1310	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1311	echo "%%END%%" >> $job_to_send
1312
1313	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1314	then
1315	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1316	echo "#!/bin/bash" >> $job_to_send
1317	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1318	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1319	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1320	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1321	echo "#PBS -j oe" >> $job_to_send
1322	echo " " >> $job_to_send
1323	echo "set -x" >> $job_to_send
1324	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1325	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1326	echo "%%END%%" >> $job_to_send
1327
1328	elif [[ $remote_host = lcflow ]]
1329	then
1330	echo "cat > scpjob.${identifier}.tmp << %%END%%" >> $job_to_send
1331	echo "#!/bin/bash" >> $job_to_send
1332	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
1333	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
1334	echo "SGEPREFIX -cwd" >> $job_to_send
1335	echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
1336	echo "SGEPREFIX -l h_vmem=500M" >> $job_to_send
1337	echo "SGEPREFIX -l excl_flow=false" >> $job_to_send
1338	echo "SGEPREFIX -j y" >> $job_to_send
1339	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$identifier" >> $job_to_send
1340	echo " " >> $job_to_send
1341	echo "set -x" >> $job_to_send
1342	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
1343	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
1344	echo "" >> $job_to_send
1345	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1346	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1347	echo "rm -f scpjob.${identifier}" >> $job_to_send
1348	echo "%%END%%" >> $job_to_send
1349	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${identifier}.tmp > scpjob.${identifier}" >> $job_to_send
1350	echo "rm -f scpjob.${identifier}.tmp" >> $job_to_send
1351	elif [[ $remote_host = lcxe6 ]]
1352	then
1353	echo "cat > scpjob.${identifier} << %%END%%" >> $job_to_send
1354	echo "#!/bin/ksh" >> $job_to_send
1355	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1356	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1357	echo "#PBS -A $project_account" >> $job_to_send
1358	echo "#PBS -l mppwidth=1" >> $job_to_send
1359	echo "#PBS -l mppnppn=1" >> $job_to_send
1360	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1361	echo "#PBS -j oe" >> $job_to_send
1362	echo " " >> $job_to_send
1363	echo "set -x" >> $job_to_send
1364	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1365	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1366	echo "%%END%%" >> $job_to_send
1367	else
1368
1369	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1370	echo "# @\\\$-q $return_queue" >> $job_to_send
1371	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1372	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1373	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1374	then
1375	echo "# @\$-l mpp_p=0" >> $job_to_send
1376	fi
1377	echo '# @\$-lF 10mb' >> $job_to_send
1378	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1379	echo '# @\\\$-eo' >> $job_to_send
1380	echo " " >> $job_to_send
1381	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1382	then
1383	echo "set +vx" >> $job_to_send
1384	echo ". .profile" >> $job_to_send
1385	fi
1386	echo "set -x" >> $job_to_send
1387	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1388	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1389	echo "%%END%%" >> $job_to_send
1390	fi
1391
1392	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1393	then
1394	echo "llsubmit scpjob.$identifier" >> $job_to_send
1395	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1396	then
1397	echo "msub -q $return_queue scpjob.$identifier" >> $job_to_send
1398	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1399	then
1400	echo "qsub -J n scpjob.$identifier" >> $job_to_send
1401	elif [[ $remote_host = t3es ]]
1402	then
1403	echo "qsub -J n -s /bin/ksh scpjob.$identifier" >> $job_to_send
1404	elif [[ $remote_host = lckiaps ]]
1405	then
1406	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1407	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"$submcom ${job_catalog}/scpjob.$identifier\" " >> $job_to_send
1408	echo "rm ${job_catalog}/scpjob.$identifier" >> $job_to_send
1409	elif [[ $remote_host = lckyu* ]]
1410	then
1411	echo "scp $PORTOPT scpjob.$identifier ${remote_username}@${remote_address}:job_queue" >> $job_to_send
1412	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"cd job_queue; $submcom scpjob.$identifier; rm scpjob.$identifier\" " >> $job_to_send
1413	elif [[ $remote_host = lcflow ]]
1414	then
1415	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1416	echo "/usr/bin/ssh ${remote_username}@${remote_address} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$identifier\" " >> $job_to_send
1417	else
1418	echo "$submcom scpjob.$identifier" >> $job_to_send
1419	fi
1420	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
1421	then
1422	echo "rm scpjob.$identifier" >> $job_to_send
1423	fi
1424	if [[ $remote_host = nech ]]
1425	then
1426	echo "cd -" >> $job_to_send
1427	fi
1428	else
1429	# echo "ftpcopy -d $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1430	# ??? funktioniert das ÃŒberhaupt noch ???
1431	echo "nohup ftpcopy -d -w 15 $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1432	fi
1433	echo "set -x" >> $job_to_send
1434	echo " ' exit" >> $job_to_send
1435	echo "set -x" >> $job_to_send
1436	fi
1437
1438
1439
1440	# APPEND THE JOB-FILE (CREATE BY mrun) TO THE JOB-DIRECTIVES GENERATED ABOVE
1441	cat $file_to_send >> $job_to_send
1442
1443	if [[ $remote_host = ibm ]]
1444	then
1445	echo " " >> $job_to_send
1446	echo "exit" >> $job_to_send
1447	fi
1448
1449	# REMOVE JOB-FILE
1450	if [[ $remote_host = lctit \|\| $remote_host = ibmku \|\| $remote_host = lcflow ]]
1451	then
1452	echo " " >> $job_to_send
1453	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1454	fi
1455
1456
1457	# TRANSFER JOB TO THE TARGET HOST (JOB-DIRECTORY)
1458	if [[ $no_submit = false ]]
1459	then
1460	if [[ $remote_host != $local_host ]]
1461	then
1462	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1463	if [[ $remote_host = ibms ]] # ssh on ibms cannot handle "~/"
1464	then
1465	job_catalog_save=$job_catalog
1466	job_catalog=job_queue
1467	elif [[ $remote_host = nech ]]
1468	then
1469	job_catalog_save=$job_catalog
1470	job_catalog=/hpf/b/${remote_user}/job_queue
1471	fi
1472	if [[ $remote_host = nech ]]
1473	then
1474	# FILES CAN ONLY BE TRANSFERED VIA DKRZ'S ARCHIVE-SERVER
1475	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1476	else
1477	scp $PORTOPT $job_to_send ${remote_user}@${remote_address}:${job_catalog}/$job_on_remhost
1478	fi
1479	if [[ $? = 1 ]]
1480	then
1481	locat=scp; exit
1482	fi
1483	if [[ $remote_host = ibms ]]
1484	then
1485	job_catalog=$job_catalog_save
1486	fi
1487	[[ $verify = true ]] && printf "\n >>> finished\n"
1488	else
1489	eval job_catalog=$job_catalog
1490	cp $job_to_send ${job_catalog}/$job_on_remhost
1491	fi
1492
1493
1494
1495	# START NQS- / LOADLEVELER-JOB
1496	if [[ $remote_host != $local_host ]]
1497	then
1498	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1499
1500	if [[ $remote_host = ibmku ]]
1501	then
1502	ssh $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1503	elif [[ $remote_host = lcflow ]]
1504	then
1505	/usr/bin/ssh $SSH_PORTOPT $remote_address -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
1506	else
1507	ssh $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1508	fi
1509
1510	[[ $verify = true ]] && printf " >>> o.k.\n"
1511	else
1512	cd $job_catalog
1513	if [[ $(echo $local_host \| cut -c1-3) = ibm \|\| $(echo $local_host \| cut -c1-6) = lccray ]]
1514	then
1515	eval $submcom $job_on_remhost
1516	elif [[ $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyu* ]]
1517	then
1518	chmod u+x $job_on_remhost
1519	eval $submcom $job_on_remhost
1520	elif [[ $local_host = nech ]]
1521	then
1522	if [[ $queue = default ]]
1523	then
1524	eval $submcom $job_on_remhost
1525	else
1526	eval $submcom -q $queue $job_on_remhost
1527	fi
1528	else
1529	qsub $job_on_remhost
1530	fi
1531
1532	# JOBFILE MUST NOT BE DELETED ON lctit/ibmku/lcflow. THIS WILL BE DONE
1533	# AT THE END OF THE JOB
1534	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
1535	then
1536	rm $job_on_remhost
1537	fi
1538	cd - > /dev/null
1539	fi
1540	fi
1541
1542
1543
1544	# FINAL ACTIONS
1545	if [[ $no_submit = false ]]
1546	then
1547	rm -f $job_to_send
1548	fi
1549	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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