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source: palm/trunk/SCRIPTS/subjob @ 1543

Last change on this file since 1543 was 1481, checked in by raasch, 10 years ago
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[1]	1	#!/bin/ksh
[1090]	2
	3	# subjob - script for automatic generation and submission of batch-job files
	4	# for various batch queuing systems
	5
[1046]	6	#--------------------------------------------------------------------------------#
	7	# This file is part of PALM.
	8	#
	9	# PALM is free software: you can redistribute it and/or modify it under the terms
	10	# of the GNU General Public License as published by the Free Software Foundation,
	11	# either version 3 of the License, or (at your option) any later version.
	12	#
	13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	16	#
	17	# You should have received a copy of the GNU General Public License along with
	18	# PALM. If not, see <http://www.gnu.org/licenses/>.
	19	#
[1310]	20	# Copyright 1997-2014 Leibniz Universitaet Hannover
[1046]	21	#--------------------------------------------------------------------------------#
	22	#
	23	# Current revisions:
[1090]	24	# ------------------
[1351]	25	#
[1481]	26	#
[1046]	27	# Former revisions:
	28	# -----------------
[169]	29	# $Id: subjob 1481 2014-10-17 14:42:35Z hoffmann $
[1200]	30	#
[1481]	31	# 1480 2014-10-17 14:41:49Z raasch
	32	# adjustments for 2nd stage of HLRNIII
	33	#
[1469]	34	# 1468 2014-09-24 14:06:57Z maronga
	35	# Typo removed (addres->address)
	36	# Adjustments for lcxe6
	37	#
[1453]	38	# 1452 2014-08-22 09:41:06Z heinze
	39	# local hosts for blizzard added
	40	#
[1451]	41	# 1450 2014-08-21 07:31:51Z heinze
	42	# HLRN-III (lccrayb): testq queue adjusted to mpp1testq
	43	#
[1443]	44	# 1442 2014-07-28 07:09:10Z raasch
	45	# HLRN-III (lccrayb/lccrayh) queues adjusted
	46	#
[1379]	47	# 1378 2014-04-28 06:04:58Z raasch
	48	# -et option added for lctit
	49	#
[1351]	50	# 1350 2014-04-04 13:01:30Z maronga
	51	# location of qsub updated for lcxe6
	52	#
[1290]	53	# 1289 2014-03-04 07:12:34Z raasch
	54	# German comments translated to English
	55	# fimm-, necriam-, scirocco-, ibmy-, and sgi-specific code removed
	56	#
[1280]	57	# 1279 2014-01-28 12:10:14Z raasch
	58	# node calculation modified due to changes in mrun (tasks_per_node must not be
	59	# an integral divisor of numprocs any more)
	60	#
[1275]	61	# 1274 2014-01-09 13:14:54Z heinze
	62	# adjustments for lccrayh
	63	#
[1267]	64	# 1266 2013-12-11 12:07:34Z heinze
	65	# further adjustments for lccrayb (use msub instead of qsub)
	66	#
[1265]	67	# 1264 2013-12-09 12:46:09Z fricke
	68	# Bugfix: Using number of nodes instead of number of processors (lccrayb)
	69	#
[1263]	70	# 1262 2013-12-09 10:57:20Z fricke
	71	# further adjustments for lccrayb
	72	#
[1261]	73	# 1260 2013-12-04 12:48:04Z raasch
	74	# jaboticaba admitted
	75	#
[1256]	76	# 1255 2013-11-07 14:43:35Z raasch
	77	# further adjustments for lccrayb
	78	#
[1225]	79	# 1224 2013-09-16 07:27:23Z raasch
	80	# first adjustments for lccrayb
	81	#
[1203]	82	# 1202 2013-07-10 16:22:07Z witha
	83	# adjustments for Forwind cluster (lcflow)
	84	#
[1200]	85	# 1199 2013-07-05 14:52:22Z raasch
	86	# adjustments for CSC Helsinki (lccrayf)
	87	#
[1185]	88	# use of cluster/express queue enabled (ibmh)
	89	# vinessa added (imuk)
[1047]	90	#
[1104]	91	# 1103 2013-02-20 02:15:53Z raasch
	92	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
	93	# instead typeset -L/R),
	94	# further adjustments for lckyuh
	95	#
[1100]	96	# 2013-02-10 01:47:43Z raasch
	97	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
	98	# and for Forwind cluster (lcflow)
	99	#
[1096]	100	# 1094 2013-02-03 01:52:12Z raasch
	101	# new option -P for explicit setting of ssh/scp port,
	102	# decalpha parts (yonsei) removed
	103	#
[1091]	104	# 2013-02-02 07:06:13Z raasch
[1099]	105	# adjustments for Kyushu-University computing center (lckyut - tatara)
[1091]	106	# old changelog messages removed
	107	#
[1047]	108	# 1046 2012-11-09 14:38:45Z maronga
	109	# code put under GPL (PALM 3.9)
	110	#
[1090]	111	# 08/07/94 - Siggi - first version finished
	112	# 29/06/94 - Siggi - script development started
	113	#--------------------------------------------------------------------------------#
	114	# subjob - script for automatic generation and submission of batch-job files
	115	# for various batch queuing systems
	116	#--------------------------------------------------------------------------------#
[1]	117
	118
[1289]	119	# VARIABLE-DECLARATIONS AND DEFAULT VALUES
[352]	120	delete_dayfile=false
[799]	121	email_notification=none
[122]	122	group_number=none
[1]	123	locat=normal
	124	no_default_queue=none
	125	no_submit=false
	126	job_catalog="~/job_queue"
	127	job_name=none
	128	local_user=$LOGNAME
	129	node_usage=shared
[475]	130	numprocs=0
[1]	131	punkte="..........................................................."
	132	submcom=qsub
	133	queue=default
	134	remote_host=none
	135	remote_user=""
	136	verify=true
	137
	138	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
[696]	139	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
[1]	140
	141
	142
[1289]	143	# ERROR HANDLING
	144	# IN CASE OF EXIT:
[1]	145	trap 'if [[ $locat != normal ]]
	146	then
	147	case $locat in
	148	(option) printf "\n --> available optios can be displayed"
	149	printf " by typing:"
	150	printf "\n \"subjob ?\" \n";;
	151	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
	152	(*) printf "\n +++ unknown error"
	153	printf "\n please inform S. Raasch!\n"
	154	esac
	155	[[ -f $job_to_send ]] && rm $job_to_send
	156	printf "\n\n+++ SUBJOB killed \n\n"
	157	fi' exit
	158
	159
[1289]	160	# IN CASE OF TERMINAL-BREAK:
[1]	161	trap '[[ -f $job_to_send ]] && rm $job_to_send
	162	printf "\n\n+++ SUBJOB killed \n\n"
	163	exit
	164	' 2
	165
	166
	167
	168
[1289]	169	# DETERMINE NAME OF LOCAL HOST
[1]	170	local_host=$(hostname)
	171
	172
	173
[1289]	174	# SET HOST-SPECIFIC VARIABLES VEREINBAREN (CHECK, IF LOCAL HOST
	175	# IS ADMITTED AT ALL)
	176	# NOTE: ONE OF THE ENTRIES FOR "lck" OR "lckordi" ALWAYS HAS TO BE
	177	# COMMENT OUT, BECAUSE THE HOSTNAME (node*) IS SAME FOR BOTH MACHINES
[1]	178	case $local_host in
[1468]	179	(ambiel-lx) local_address=134.106.74.48; local_host=lcfor;;
	180	(atmos) local_address=172.20.25.35; local_host=lcide;;
	181	(austru) local_address=130.75.105.128; local_host=lcmuk;;
	182	(autan) local_address=130.75.105.57; local_host=lcmuk;;
	183	(bora) local_address=130.75.105.103; local_host=lcmuk;;
	184	(b04*) local_address=133.5.4.33; local_host=lckyuh;;
	185	(blizzard1\|p*) local_address=136.172.40.15; local_host=ibmh;;
	186	(blizzard2\|p*) local_address=136.172.40.16; local_host=ibmh;;
	187	(blogin\|bxc) local_address=130.73.233.1; local_host=lccrayb;;
	188	(hlogin\|hxc) local_address=130.75.4.1; local_host=lccrayh;;
	189	(breva) local_address=130.75.105.98; local_host=lcmuk;;
	190	(buran) local_address=130.75.105.58; local_host=lcmuk;;
	191	(caurus) local_address=130.75.105.19; local_host=lcmuk;;
	192	(climate*) local_address=165.132.26.68; local_host=lcyon;;
	193	(clogin*) local_address=86.50.166.21; local_host=lccrayf;;
	194	(cs*) local_address=136.172.44.131; local_host=nech;;
	195	(elephanta) local_address=130.75.105.6; local_host=lcmuk;;
	196	(flow01) local_address=10.141.255.71; local_host=lcflow;;
	197	(flow02) local_address=10.141.255.72; local_host=lcflow;;
	198	(node*) local_address=165.132.26.61 local_host=lck;;
	199	# (node*) local_address=210.219.61.8 local_host=lckordi;;
	200	(gaia*) local_address=150.183.146.24; local_host=ibmkisti;;
	201	(gallego) local_address=130.75.105.10; local_host=lcmuk;;
	202	(gregale) local_address=130.75.105.109; local_host=lcmuk;;
	203	(hababai) local_address=130.75.105.108; local_host=lcmuk;;
	204	(hayaka*) local_address=133.5.4.33; local_host=lckyuh;;
	205	(hexagon.bccs.uib.no) local_address=129.177.20.113; local_host=lcxe6;;
	206	(hx*) local_address=133.3.51.11; local_host=lckyoto;;
	207	(inferno) local_address=130.75.105.5; local_host=lcmuk;;
	208	(irifi) local_address=130.75.105.104; local_host=lcmuk;;
	209	(jaboticaba) local_address=150.163.25.181; local_host=lcbr;;
	210	(sno) local_address=130.75.105.113; local_host=lcmuk;;
	211	(levanto) local_address=130.75.105.45; local_host=lcmuk;;
	212	(login*) local_address=118.128.66.223; local_host=lckiaps;;
	213	(maestro) local_address=130.75.105.2; local_host=lcmuk;;
	214	(meller) local_address=134.106.74.155; local_host=lcfor;;
	215	(meteo-login*) local_address=193.166.211.144;local_host=lcxt5m;;
	216	(hexagon*) local_address=129.177.20.113; local_host=lcxe6;;
	217	(nobel*) local_address=150.183.5.101; local_host=ibms;;
	218	(orkan) local_address=130.75.105.3; local_host=lcmuk;;
	219	(ostria) local_address=130.75.105.106; local_host=lcmuk;;
	220	(paesano) local_address=130.75.105.46; local_host=lcmuk;;
	221	(pcj*) local_address=172.31.120.1; local_host=lckyut;;
	222	(pingui) local_address=134.106.74.118; local_host=lcfor;;
	223	(quanero) local_address=130.75.105.107; local_host=lcmuk;;
	224	(rte*) local_address=133.5.185.60; local_host=lcrte;;
	225	(shiokaze-lx) local_address=134.106.74.123; local_host=lcfor;;
	226	(sisu-login*) local_address=86.50.166.21; local_host=lccrayf;;
	227	(solano) local_address=130.75.105.110; local_host=lcmuk;;
	228	(sugoka*) local_address=172.31.120.1; local_host=lckyut;;
	229	(t2a*) local_address=10.1.6.165; local_host=lctit;;
	230	(urban*) local_address=147.46.30.151 local_host=lcsb;;
	231	(vinessa) local_address=130.75.105.112; local_host=lcmuk;;
	232	(vorias) local_address=172.20.25.43; local_host=lcmuk;;
	233	(*.cc.kyushu-u.ac.jp) local_address=133.5.4.129; local_host=ibmku;;
[1]	234	(*) printf "\n +++ \"$local_host\" unknown";
[1255]	235	printf "\n please contact the PALM group at IMUK";
[1]	236	locat=parameter; exit;;
	237	esac
	238
	239
	240
[1289]	241	# BY DEFAULT, THE REMOTE HOST IS THE LOCAL HOST
[1]	242	remote_host=$local_host
	243
	244
	245
	246
[1289]	247	# READ THE SHELLSCRIPT-OPTIONS
[1094]	248	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
[1]	249	do
	250	case $option in
	251	(c) job_catalog=$OPTARG;;
	252	(d) delete_dayfile=true;;
	253	(D) no_submit=true;;
[352]	254	(e) email_notification=$OPTARG;;
[125]	255	(g) group_number=$OPTARG;;
[1]	256	(h) remote_host=$OPTARG;;
	257	(m) memory=$OPTARG;;
	258	(n) job_name=$OPTARG;;
	259	(N) node_usage=$OPTARG;;
	260	(O) threads_per_task=$OPTARG;;
[1094]	261	(P) scp_port=$OPTARG;;
[1]	262	(q) no_default_queue=$OPTARG;;
	263	(t) cputime=$OPTARG;;
	264	(T) tasks_per_node=$OPTARG;;
	265	(u) remote_user=$OPTARG;;
	266	(v) verify=false;;
	267	(X) numprocs=$OPTARG;;
	268	(\?) printf "\n +++ Option $OPTARG unknown \n";
	269	locat=option; exit;;
	270	esac
	271	done
	272
	273
[1289]	274	# GET THE NAME OF THE JOBFILE AS NEXT ARGUMENT
[1103]	275	(( to_shift = $OPTIND - 1 ))
	276	shift $to_shift; file_to_send=$1
[1]	277
	278
[1289]	279	# OUTPUT OF SHORT DESCRIPTION OF SCRIPT-OPTIONS
[1]	280	if [ "$1" = "?" ]
	281	then
	282	(printf "\n *** subjob can be called as follows:\n"
	283	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
	284	printf "\n Description of available options:\n"
	285	printf "\n Option Description Default-Value"
	286	printf "\n -c job-input- and output-catalog ~/job_queue"
	287	printf "\n -d no job-protocol will be created ---"
	288	printf "\n -D only the job-file will be created ---"
	289	printf "\n -h execution host, available hosts: $remote_host"
[1289]	290	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, lc...,"
	291	printf "\n lckiaps, lctit, nech"
[1]	292	printf "\n -m memory demand per process in MByte ---"
	293	printf "\n -n jobname <jobdatei>"
	294	printf "\n -O threads per task (for OpenMP usage) 1"
[1094]	295	printf "\n -P ssh/scp port default port"
[1]	296	printf "\n -q job-queue to be used default"
	297	printf "\n -t allowed cpu-time in seconds ---"
	298	printf "\n -T tasks per node (on parallel hosts) ---"
	299	printf "\n -u username on execution host from .netrc"
	300	printf "\n -v no prompt for confirmation ---"
	301	printf "\n -X # of processors (on parallel hosts) 1"
	302	printf "\n "
	303	printf "\n The only possible positional parameter is <jobfile>:"
	304	printf "\n The complete NQS-job must be provided here."
	305	printf "\n <jobfile>=? creates this outline\n\n") \| more
	306	exit
	307	fi
	308
	309
	310
[1289]	311	# CHECK, IF JOB-FILE HAS BEEN GIVEN AS ARGUMENT AND IF THE FILE ITSELF EXISTS
[1]	312	if [[ "$file_to_send" = "" ]]
	313	then
	314	printf "\n +++ job-file missing"
	315	locat=parameter; exit
	316	else
	317	if [[ -f $file_to_send ]]
	318	then
	319	true
	320	else
	321	printf "\n +++ job-file: "
	322	printf "\n $file_to_send"
	323	printf "\n does not exist"
	324	locat=parameter; exit
	325	fi
	326	fi
	327
	328
	329
[1289]	330	# IF NO JOBNAME HAS BEEN GIVEN, JOBNAME IS SET TO THE NAME OF THE JOB-FILE,
	331	# PROVIDED THAT THE JOB-FILE NAME DOES NOT CONTAIN ANY PATH
[1]	332	if [[ $job_name = none ]]
	333	then
	334	job_name=$file_to_send
	335	fi
	336	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
	337	then
	338	printf "\n +++ job-file name: "
	339	printf "\n $job_name"
	340	printf "\n must not contain \"/\"-characters"
	341	locat=parameter; exit
	342	fi
	343
	344
	345
	346
[1289]	347	# SET HOST-SPECIFIC QUANTITIES, OR TERMINATE IN CASE OF UNKNOWN HOST,
	348	# OR IF NO HOST HAS BEEN GIVEN
[1]	349	if [[ $remote_host = none ]]
	350	then
	351	printf "\n +++ host missing"
	352	locat=option; exit
	353	else
	354	case $remote_host in
[1468]	355	(ibm) queue=p690_standard; remote_address=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	356	(ibmh) queue=cluster; remote_address=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	357	(ibmkisti) queue=class.32plus; remote_address=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	358	(ibmku) queue=s4; remote_address=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
	359	(ibms) queue=p_normal; remote_address=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[1480]	360	(lccrayb) queue=mpp1testq; remote_address=130.73.233.1; submcom=/opt/moab/default/bin/msub;;
	361	(lccrayh) queue=mpp1testq; remote_address=130.75.4.1; submcom=/opt/moab/default/bin/msub;;
[1468]	362	(lccrayf) queue=small; remote_address=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
	363	(lcflow) remote_address=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;;
	364	(lckyoto) remote_address=133.3.51.11; submcom=/thin/local/bin/qsub;;
	365	(lck) remote_address=165.132.26.61; submcom=/usr/torque/bin/qsub;;
	366	(lckiaps) remote_address=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
	367	(lckordi) remote_address=210.219.61.8; submcom=/usr/torque/bin/qsub;;
	368	(lckyuh) remote_address=133.5.4.33; submcom=/usr/bin/pjsub;;
	369	(lckyut) remote_address=133.5.4.37; submcom=/usr/bin/pjsub;;
	370	(lcsb) remote_address=147.46.30.151; submcom=/usr/torque/bin/qsub;;
	371	(lctit) queue=S; remote_address=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
	372	(lcxe6) remote_address=129.177.20.113; submcom=/opt/torque/default/bin/qsub;;
	373	(lcxt5m) remote_address=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
	374	(lcyon) remote_address=165.132.26.68; submcom=/usr/torque/bin/qsub;;
	375	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_address=136.172.44.147; submcom="/usr/local/bin/qsub";;
[251]	376	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
	377	locat=parameter; exit;;
[1]	378	esac
	379	fi
	380
	381
[1289]	382	# CHECK, IF A VALID QUEUE HAS BEEN GIVEN
[1]	383	if [[ $no_default_queue != none ]]
	384	then
	385	error=false
	386	ndq=$no_default_queue
	387	case $remote_host in
	388	(ibm) case $ndq in
	389	(p690_express\|p690_standard\|p690_long) error=false;;
	390	(*) error=true;;
	391	esac;;
	392	(ibmh) case $ndq in
[1184]	393	(cluster\|express) error=false;;
[1]	394	(*) error=true;;
	395	esac;;
[693]	396	(ibmkisti) case $ndq in
	397	(class.32plus\|class.1-2\|class.2-32) error=false;;
	398	(*) error=true;;
	399	esac;;
[622]	400	(ibmku) case $ndq in
	401	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
	402	(*) error=true;;
	403	esac;;
[1]	404	(ibms) case $ndq in
	405	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
	406	(*) error=true;;
	407	esac;;
[1224]	408	(lccrayb) case $ndq in
[1480]	409	(dataq\|mpp1q\|mpp1testq\|mpp2q\|mpp2testq\|smp1q\|smp1testq\|specialm1q) error=false;;
[1224]	410	(*) error=true;;
	411	esac;;
[1274]	412	(lccrayh) case $ndq in
[1442]	413	(dataq\|mpp1q\|mpp1testq\|smp1q\|smp1testq\|specialm1q) error=false;;
[1274]	414	(*) error=true;;
	415	esac;;
[1197]	416	(lccrayf) case $ndq in
	417	(usup\|test*\|small\|large) error=false;;
	418	(*) error=true;;
	419	esac;;
[1099]	420	(lcflow) case $ndq in
	421	(cfd_lom_long.q\|cfd_him_long.q\|cfd_lom_serl.q\|cfd_lom_shrt.q\|cfd_him_shrt.q) error=false;;
	422	(*) error=true;;
	423	esac;;
[1040]	424	(lckiaps) case $ndq in
	425	(express\|normal) error=false;;
	426	(*) error=true;;
	427	esac;;
[440]	428	(lckyoto) case $ndq in
	429	(eh\|ph) error=false;;
	430	(*) error=true;;
	431	esac;;
[1099]	432	(lckyuh) case $ndq in
	433	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
	434	(*) error=true;;
	435	esac;;
[1090]	436	(lckyut) case $ndq in
	437	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
	438	(*) error=true;;
	439	esac;;
[1]	440	(lctit) case $ndq in
[635]	441	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
[1]	442	(*) error=true;;
	443	esac;;
	444	(t3eb) case $ndq in
	445	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
	446	(*) error=true;;
	447	esac;;
	448	(t3eh) case $ndq in
	449	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
	450	(*) error=true;;
	451	esac;;
	452	(t3ej2\|t3ej5) case $ndq in
	453	(low\|normal\|high) error=false;;
	454	(*) error=true;;
	455	esac;;
	456	(t3es) case $ndq in
	457	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
	458	(*) error=true;;
	459	esac;;
	460	esac
	461	if [[ $error = true ]]
	462	then
	463	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
	464	locat=parameter; exit
	465	else
	466	queue=$no_default_queue
	467	fi
	468	fi
	469
	470
	471
[1289]	472	# CHECK THE CPU-TIME
	473	# SPLIT TIME INTO HOURS, MINUTES, AND SECONDS
[1]	474	done=false
	475	while [[ $done = false ]]
	476	do
	477	if (( $cputime <= 0 ))
	478	then
	479	printf "\n +++ wrong cpu-time or cpu-time missing"
	480	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
	481	printf "\n >>> "
	482	read cputime 1>/dev/null 2>&1
	483	else
	484	done=true
	485	fi
	486	done
	487	if [[ $remote_host = nech ]]
	488	then
	489	if (( tasks_per_node != 0 ))
	490	then
	491	(( cputime = cputime * tasks_per_node ))
	492	elif [[ $numprocs != 0 ]]
	493	then
	494	(( cputime = cputime * numprocs ))
	495	fi
	496	fi
	497	(( stunden = cputime / 3600 ))
	498	(( resttime = cputime - stunden * 3600 ))
	499	(( minuten = resttime / 60 ))
	500	(( sekunden = resttime - minuten * 60 ))
	501	timestring=${stunden}:${minuten}:${sekunden}
	502
	503
	504
[1289]	505	# CHECK THE MEMORY DEMAND
[1]	506	done=false
	507	while [[ $done = false ]]
	508	do
	509	if (( memory <= 0 ))
	510	then
	511	printf "\n +++ wrong memory demand or memory demand missing"
	512	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	513	printf "\n >>> "
	514	read memory 1>/dev/null 2>&1
	515	else
	516	done=true
	517	fi
	518	done
	519
[1289]	520	if [[ $remote_host = nech ]]
[1]	521	then
	522	if (( tasks_per_node != 0 ))
	523	then
	524	(( Memory = memory * tasks_per_node / 1000 ))
	525	elif [[ $numprocs != 0 ]]
	526	then
	527	(( Memory = memory * numprocs / 1000 ))
	528	else
	529	(( Memory = memory / 1000 ))
	530	fi
[635]	531	elif [[ $remote_host = lctit ]]
	532	then
	533	(( Memory = memory * tasks_per_node / 1000 ))
[1]	534	fi
	535
	536
[1289]	537	# MEMORY DEMAND IN CASE OF OPENMP-USAGE ON IBM-SYSTEMS
[1]	538	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	539	then
	540	(( memory = memory * threads_per_task ))
	541	fi
	542
	543
[1289]	544	# CALCULATE NUMBER OF REQUIRED NODES
[1]	545	if (( tasks_per_node != 0 ))
	546	then
[1279]	547	(( nodes = ( numprocs - 1 ) / ( tasks_per_node * threads_per_task ) + 1 ))
[1]	548	fi
	549
[1094]	550
[1289]	551	# CALCULATE NUMBER OF PROCESSES PER NODE
[622]	552	(( processes_per_node = tasks_per_node * threads_per_task ))
[1]	553
[1094]	554
[1289]	555	# CALCULATE NUMBER OF MPI TASKS
[696]	556	(( mpi_tasks = numprocs / threads_per_task ))
[1]	557
[696]	558
[1289]	559	# SET PORT NUMBER OPTION FOR CALLS OF ssh/scp, subjob AND batch_scp SCRIPTS
[1094]	560	if [[ "$scp_port" != "" ]]
	561	then
	562	PORTOPT="-P $scp_port"
	563	SSH_PORTOPT="-p $scp_port"
	564	fi
	565
	566
[1289]	567	# HEADER-OUTPUT
[1]	568	if [[ $verify = true ]]
	569	then
	570	printf "\n\n"
	571	printf "#--------------------------------------------------------------# \n"
	572	spalte1=SUBJOB;spalte2=$(date)
[1103]	573	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
[1]	574	printf "\| \| \n"
	575	printf "\| values of parameters/options: \| \n"
[1103]	576	spalte1=$(echo local_host$punkte \| cut -c-20)
	577	spalte2=$punkte$local_host
	578	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	579	spalte1=$(echo remote_host$punkte \| cut -c-20)
	580	spalte2=$punkte$remote_host
	581	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	582	spalte1=$(echo queue$punkte \| cut -c-20)
	583	spalte2=$punkte$queue
	584	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	585	spalte1=$(echo memory$punkte \| cut -c-20)
	586	spalte2="$punkte$memory mb"
	587	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	588	spalte1=$(echo cputime$punkte \| cut -c-20)
	589	spalte2="$punkte$cputime sec"
	590	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	591	spalte1=$(echo job_name$punkte \| cut -c-20)
	592	spalte2="$punkte$job_name"
	593	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
[1]	594	printf "#--------------------------------------------------------------# \n\n"
	595
	596
[1289]	597	# QUERY CHECK
[1]	598	antwort="dummy"
	599	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
	600	do
	601	read antwort?" >>> continue (y/n) ? "
	602	done
	603	if [[ $antwort = n \|\| $antwort = N ]]
	604	then
	605	locat=verify; exit
	606	fi
	607	printf "\n"
	608	fi
	609
	610
	611
[1289]	612	# GENERATE RANDOM IDENTIFIER, AND DETERMINE THE JOBNAME ON THE TARGET HOST
	613	identifier=$RANDOM
	614	job_on_remhost=${job_name}_${identifier}_$local_host
	615	job_to_send=job_to_send_$identifier
[1]	616	if [[ $delete_dayfile = false ]]
	617	then
[1289]	618	remote_dayfile=${local_host}_${job_name}_result_$identifier
[1]	619	local_dayfile=${remote_host}_${job_name}
	620	else
	621	remote_dayfile=/dev/null
	622	fi
	623
	624
	625
[1289]	626	# GENERATE THE BATCH-JOB SCRIPTS (FOR QUEUEING-SYSTEMS qsub/msub/LoadLeveler)
[1]	627	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
	628	then
	629
[1289]	630	# GENERAL LOADLEVELER SETTINGS
[622]	631	execute_in_shell="#!/bin/ksh"
	632	use_shell="# @ shell = /bin/ksh"
	633	consumable_memory="ConsumableMemory($memory mb)"
	634	class="# @ class = $queue"
	635	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
	636	network_to_use="# @ network.mpi = sn_all,shared,us"
	637	data_limit="# @ data_limit = 1.76gb"
	638	image_size="# @ image_size = 50"
[693]	639	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
[312]	640
[693]	641	if [[ $email_notification = none ]]
	642	then
	643	notify_user=""
	644	else
	645	notify_user="# @ notify_user = $email_notification"
	646	if [[ $delete_dayfile = true ]]
	647	then
	648	notification='# @ notification = never'
	649	fi
	650	fi
[622]	651
[312]	652	if [[ $remote_host = ibmh ]]
[1]	653	then
[312]	654	data_limit=""
	655	network_to_use=""
[1184]	656	class="# @ class = $queue"
[312]	657	environment=""
[814]	658	rset="# @ rset = RSET_MCM_AFFINITY"
	659	task_affinity="# @ task_affinity = core(1)"
[693]	660	elif [[ $remote_host = ibmkisti ]]
	661	then
	662	network_to_use="# @ network.MPI = sn_all,shared,US"
	663	wall_clock_limit="# @ wall_clock_limit = $timestring"
[696]	664	if [[ $threads_per_task = 1 ]]
	665	then
	666	rset="# @ rset = RSET_MCM_AFFINITY"
	667	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
	668	fi
[693]	669	environment=""
	670	use_shell=""
	671	data_limit=""
	672	image_size=""
[622]	673	elif [[ $remote_host = ibmku ]]
	674	then
	675	execute_in_shell="#!/usr/bin/ksh"
	676	use_shell="# @ shell = /usr/bin/ksh"
	677	consumable_memory=""
	678	environment=""
	679	network_to_use="# @ network.mpi = sn_all,shared,us"
	680	data_limit=""
	681	image_size=""
	682	elif [[ $remote_host = ibms ]]
	683	then
	684	network_to_use="# @ network.mpi = csss,shared,us"
[1]	685	fi
	686
	687	cat > $job_to_send << %%END%%
[622]	688	$execute_in_shell
	689	$use_shell
[1]	690
	691	# @ job_type = parallel
[693]	692	# @ job_name = $job_name
[1]	693	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
	694	# @ output = $remote_dayfile
	695	# @ error = $remote_dayfile
[693]	696	$wall_clock_limit
[622]	697	$image_size
[312]	698	$class
	699	$environment
[1]	700	$network_to_use
	701	$data_limit
[693]	702	$rset
	703	$mcm_affinity_options
[814]	704	$task_affinity
[1]	705	$notification
[693]	706	$notify_user
[1]	707
	708	%%END%%
	709
	710	if (( nodes > 0 ))
	711	then
	712
[693]	713	if [[ $remote_host != ibmkisti ]]
	714	then
	715
	716	cat >> $job_to_send << %%END%%
[1]	717	# @ node = $nodes
[622]	718	# @ tasks_per_node = $processes_per_node
[1]	719	# @ node_usage = $node_usage
	720	# @ queue
	721
	722	%%END%%
	723
[693]	724	else
	725
	726	cat >> $job_to_send << %%END%%
[696]	727	# @ total_tasks = $mpi_tasks
[693]	728	# @ blocking = unlimited
	729	# @ queue
	730
	731	%%END%%
	732
	733	fi
	734
[1]	735	else
	736
[1289]	737	cat >> $job_to_send << %%END%%
[1]	738	# @ blocking = unlimited
	739	# @ total_tasks = $numprocs
	740	# @ node_usage = $node_usage
	741	# @ queue
	742
	743	%%END%%
	744
	745	fi
	746
[1289]	747	# WORKAROUND BECAUSE OF SILLY JOB FILTER ON ibmkisti
[696]	748	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
	749	then
	750	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
	751	fi
	752
[1]	753	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
	754	then
	755
	756	cat > $job_to_send << %%END%%
	757	#!/bin/ksh
	758
	759	# @ job_type = serial
	760	# @ node_usage = $node_usage
	761	# @ job_name = palm
	762	# @ wall_clock_limit = ${timestring},$timestring
	763	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
	764	# @ output = $remote_dayfile
	765	# @ error = $remote_dayfile
[312]	766	$class
[1]	767	$notification
	768
	769	# @ queue
	770
	771	%%END%%
	772
[1274]	773	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
[1224]	774	then
	775
[1480]	776	if [[ "$feature" != "" ]]
	777	then
	778	featuredir="#PBS -l feature=$feature"
	779	fi
	780
[1224]	781	if [[ $numprocs != 0 ]]
	782	then
	783	cat > $job_to_send << %%END%%
[1255]	784	#!/bin/bash
[1224]	785	#PBS -N $job_name
	786	#PBS -l walltime=$timestring
[1264]	787	#PBS -l nodes=$nodes:ppn=$processes_per_node
[1224]	788	#PBS -o $remote_dayfile
	789	#PBS -j oe
	790	#PBS -q $queue
[1480]	791	$featuredir
[1224]	792
	793	$module_calls
	794
	795	%%END%%
	796
	797	else
	798
	799	continue
	800
	801	fi
	802
[1197]	803	elif [[ $remote_host = lccrayf ]]
	804	then
	805
	806	if [[ $numprocs != 0 ]]
	807	then
	808	cat > $job_to_send << %%END%%
	809	#!/bin/bash -l
	810	#SBATCH -J $job_name
	811	#SBATCH -t $timestring
	812	#SBATCH -N $nodes
	813	#SBATCH --ntasks-per-node=$processes_per_node
	814	#SBATCH -p $queue
	815	#SBATCH -o $remote_dayfile
	816	#SBATCH -e $remote_dayfile
	817
	818	$init_cmds
	819	$module_calls
	820
	821	%%END%%
	822
	823	else
	824	cat > $job_to_send << %%END%%
	825	#!/bin/bash -l
	826	#SBATCH -J $job_name
	827	#SBATCH -t $timestring
	828	#SBATCH -l ncpus=1
	829	#SBATCH -l pmem=${memory}mb
	830	#SBATCH -m abe
	831	#SBATCH -o $remote_dayfile
	832	#SBATCH -e $remote_dayfile
	833
	834	$init_cmds
	835	$module_calls
	836
	837	%%END%%
	838
	839	fi
	840
[1099]	841	elif [[ $remote_host = lcflow ]]
	842	then
[1202]	843	if [ $memory -gt 1800 ]; then
[1099]	844	use_himem=""
	845	else
	846	use_himem="#"
	847	fi
	848	if [[ $numprocs != 0 ]]
	849	then
[1202]	850	pe_set="#$ -pe impi41 $numprocs"
[1099]	851	else
[1202]	852	pe_set="#$ -pe impi41 1"
[1099]	853	fi
	854	if [[ $queue = default ]]
	855	then
	856	queue_set=""
	857	else
	858	queue_set="#$ -q $queue"
	859	fi
	860	[[ "$disc_space" = "" ]] && disc_space=50
	861
	862	cat > $job_to_send << %%END%%
	863	#!/bin/bash
	864	#$ -S /bin/bash
	865	#$ -N $job_name
	866	#$ -cwd
	867	#$ -l h_rt=$timestring
	868	#$ -l h_vmem=${memory}M
	869	#$ -o $remote_dayfile
	870	#$ -j y
	871	$pe_set
	872	#$ -R y
	873	${use_himem}#$ -l highmem=true
	874	#$ -l h_fsize=${disc_space}G
	875	$queue_set
	876
	877	%%END%%
	878
[1021]	879	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
[368]	880	then
	881
	882	if [[ $numprocs != 0 ]]
	883	then
	884	cat > $job_to_send << %%END%%
	885	#!/bin/ksh
	886	#PBS -N $job_name
	887	#PBS -l walltime=$timestring
	888	#PBS -l ncpus=$numprocs
	889	#PBS -l pmem=${memory}mb
	890	#PBS -o $remote_dayfile
[1021]	891	#PBS -l nodes=$nodes:ppn=${processes_per_node}
[368]	892	#PBS -j oe
	893
	894	mpd &
	895
	896	%%END%%
	897
	898	else
	899	cat > $job_to_send << %%END%%
	900	#!/bin/ksh
	901	#PBS -N $job_name
	902	#PBS -l walltime=$timestring
	903	#PBS -l ncpus=1
	904	#PBS -l pmem=${memory}mb
	905	#PBS -o $remote_dayfile
	906	#PBS -j oe
	907
	908	%%END%%
	909
	910	fi
	911
[1040]	912	elif [[ $remote_host = lckiaps ]]
	913	then
	914
	915	if [[ $numprocs != 0 ]]
	916	then
	917	cat > $job_to_send << %%END%%
	918	#!/bin/ksh
	919	#PBS -N $job_name
	920	#PBS -l walltime=$timestring
	921	#PBS -l select=1:ncpus=$numprocs
	922	#PBS -l pmem=${memory}mb
	923	#PBS -q $queue
	924	#PBS -o $remote_dayfile
	925	#PBS -j oe
	926	#PBS -V
	927
	928	%%END%%
	929
	930	else
	931	cat > $job_to_send << %%END%%
	932	#!/bin/ksh
	933	#PBS -N $job_name
	934	#PBS -l walltime=$timestring
	935	#PBS -l ncpus=1
	936	#PBS -l pmem=${memory}mb
	937	#PBS -o $remote_dayfile
	938	#PBS -j oe
	939
	940	%%END%%
	941
	942	fi
	943
[693]	944	elif [[ $remote_host = lcyon ]]
	945	then
	946
	947	if [[ $numprocs != 0 ]]
	948	then
	949	cat > $job_to_send << %%END%%
	950	#!/bin/ksh
	951	#PBS -N $job_name
	952	#PBS -l walltime=$timestring
	953	#PBS -l ncpus=$numprocs
	954	#PBS -l pmem=${memory}mb
	955	#PBS -o $remote_dayfile
	956	#PBS -j oe
	957
	958	%%END%%
	959
	960	else
	961	cat > $job_to_send << %%END%%
	962	#!/bin/ksh
	963	#PBS -N $job_name
	964	#PBS -l walltime=$timestring
	965	#PBS -l ncpus=1
	966	#PBS -l pmem=${memory}mb
	967	#PBS -o $remote_dayfile
	968	#PBS -j oe
	969
	970	%%END%%
	971
	972	fi
	973
[892]	974	elif [[ $remote_host = lcxe6 ]]
[164]	975	then
	976
	977	if [[ $numprocs != 0 ]]
	978	then
	979	cat > $job_to_send << %%END%%
[799]	980	#!/bin/ksh
[164]	981	#PBS -S /bin/ksh
	982	#PBS -N $job_name
[552]	983	#PBS -A $project_account
[206]	984	#PBS -j oe
[164]	985	#PBS -l walltime=$timestring
	986	#PBS -l mppwidth=${numprocs}
[622]	987	#PBS -l mppnppn=${processes_per_node}
[164]	988	#PBS -m abe
	989	#PBS -o $remote_dayfile
[492]	990	$email_directive
[164]	991
[892]	992	$init_cmds
[493]	993	$module_calls
[343]	994
[164]	995	%%END%%
	996
[108]	997	else
	998	cat > $job_to_send << %%END%%
	999	#!/bin/ksh
[168]	1000	#PBS -S /bin/ksh
[108]	1001	#PBS -N $job_name
[552]	1002	#PBS -A $project_account
[206]	1003	#PBS -j oe
[108]	1004	#PBS -l walltime=$timestring
	1005	#PBS -l ncpus=1
	1006	#PBS -l pmem=${memory}mb
	1007	#PBS -m abe
[492]	1008	$email_directive
[108]	1009	#PBS -o $remote_dayfile
	1010
[892]	1011	$init_cmds
[493]	1012	$module_calls
[343]	1013
[108]	1014	%%END%%
	1015
	1016	fi
	1017
[440]	1018	elif [[ $remote_host = lckyoto ]]
[437]	1019	then
	1020
[440]	1021	cat > $job_to_send << %%END%%
[799]	1022	#!/bin/ksh
[440]	1023	# @\$-o $remote_dayfile
	1024	# @\$-eo -oi
	1025	# @\$-lP 16
[799]	1026	# @\$-lp 1
[440]	1027	# @\$-lm 28gb -llm unlimited -ls unlimited
	1028	# @\$-q $queue
	1029	# @\$-Pvn abs_pack
	1030	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
	1031	#. /thin/local/etc/setprofile/intel-11.0.sh
	1032	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
	1033	. ~/.myprofile
	1034	#. /home2/t/t51254/palm/current_version/myprofile
	1035	#. /thin/apps/pgi/mpi.sh
	1036	#
	1037	env
	1038	#
	1039	set -x
	1040
	1041	%%END%%
	1042
	1043	elif [[ $remote_host = lcxt5m ]]
	1044	then
	1045
[437]	1046	if [[ $numprocs != 0 ]]
	1047	then
	1048	cat > $job_to_send << %%END%%
[799]	1049	#!/bin/ksh
[437]	1050	#PBS -S /bin/ksh
	1051	#PBS -N $job_name
	1052	#PBS -j oe
	1053	#PBS -l walltime=$timestring
	1054	#PBS -l mppwidth=${numprocs}
[622]	1055	#PBS -l mppnppn=${processes_per_node}
[437]	1056	#PBS -m abe
	1057	#PBS -o $remote_dayfile
	1058
[892]	1059	$init_cmds
[493]	1060	$module_calls
[437]	1061
	1062	%%END%%
	1063
	1064	else
	1065	cat > $job_to_send << %%END%%
	1066	#!/bin/ksh
	1067	#PBS -S /bin/ksh
	1068	#PBS -N $job_name
	1069	#PBS -j oe
	1070	#PBS -l walltime=$timestring
	1071	#PBS -l ncpus=1
	1072	#PBS -l pmem=${memory}mb
	1073	#PBS -m abe
	1074	#PBS -o $remote_dayfile
	1075
[892]	1076	$init_cmds
[493]	1077	$module_calls
[437]	1078
	1079	%%END%%
	1080
	1081	fi
	1082
[1099]	1083	elif [[ $remote_host = lckyuh ]]
	1084	then
	1085	cat > $job_to_send << %%END%%
	1086	#!/bin/bash
	1087	#PJM -L "rscgrp=$queue"
	1088	#PJM -L "node=$nodes"
	1089	#PJM --mpi "proc=$numprocs"
	1090	#PJM -L "elapse=$timestring"
	1091	#PJM -o $remote_dayfile
	1092	#PJM -j
	1093	#PJM -X
	1094	#PJM --no-stging
	1095
	1096	export LANG=en_US.UTF-8
	1097	%%END%%
	1098
[1090]	1099	elif [[ $remote_host = lckyut ]]
	1100	then
	1101	cat > $job_to_send << %%END%%
	1102	#!/bin/bash
[1099]	1103	#PJM -L "rscgrp=$queue"
[1090]	1104	#PJM -L "vnode=$numprocs"
	1105	#PJM -L "vnode-core=1"
	1106	#PJM -L "elapse=$timestring"
	1107	#PJM --mpi proc=$numprocs
	1108	#PJM -o $remote_dayfile
	1109	#PJM -j
[1099]	1110	#PJM -X
	1111	#PJM --no-stging
[1090]	1112
	1113	export LANG=en_US.UTF-8
	1114	%%END%%
	1115
[1]	1116	elif [[ $remote_host = nech ]]
	1117	then
	1118
	1119	if (( nodes > 1 ))
	1120	then
	1121	cat > $job_to_send << %%END%%
	1122	#!/bin/ksh
[622]	1123	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
[1]	1124	#PBS -l ${qsubmem}=${Memory}gb
	1125	#PBS -b $nodes
	1126	#PBS -o $remote_dayfile
	1127	#PBS -N palm
	1128	#PBS -j o
	1129	#PBS -T mpisx
	1130
	1131	%%END%%
	1132
	1133	elif [[ $numprocs != 0 ]]
	1134	then
	1135	cat > $job_to_send << %%END%%
	1136	#!/bin/ksh
[622]	1137	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
[1]	1138	#PBS -l ${qsubmem}=${Memory}gb
	1139	#PBS -o $remote_dayfile
	1140	#PBS -N palm
	1141	#PBS -j o
	1142
	1143	%%END%%
	1144
	1145	else
	1146	cat > $job_to_send << %%END%%
	1147	#!/bin/ksh
	1148	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
	1149	#PBS -o $remote_dayfile
	1150	#PBS -j o
	1151
	1152	%%END%%
	1153
	1154	fi
	1155
	1156	elif [[ $remote_host = lctit ]]
	1157	then
	1158	cat > $job_to_send << %%END%%
[635]	1159	#!/bin/ksh
[892]	1160	$init_cmds
[678]	1161	$module_calls
	1162
[1]	1163	%%END%%
	1164
[1289]	1165	# SET OPTIONS FOR SUBMIT-COMMAND
[678]	1166	if [[ $tasks_per_node != $processes_per_node ]]
	1167	then
[1378]	1168	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -et 1 -q $queue "
[678]	1169	else
[1378]	1170	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -et 1 -q $queue "
[678]	1171	fi
[1]	1172
	1173	else
	1174
	1175	cat > $job_to_send << %%END%%
	1176	# @\$-q ${queue}
	1177	# @\$-l${qsubtime} $timestring
	1178	# @\$-l${qsubmem} ${memory}mb
	1179	# @\$-o $remote_dayfile
	1180	# @\$-eo
	1181
	1182	%%END%%
	1183
	1184	fi
	1185
	1186
[1289]	1187	# IN CASE OF JOBS EXECUTING ON REMOTE-HOSTS, THE TRANSFER OF THE DAYFILES
	1188	# TO THE LOCAL HOSTS WILL BE INITIATED BY TRAP ON EXIT
	1189	# NO TRANSFER POSSIBLE ON IBM IN SEOUL
[1]	1190	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
	1191	then
	1192	echo "set +vx" >> $job_to_send
	1193	echo "trap '" >> $job_to_send
	1194	echo "set +vx" >> $job_to_send
[1468]	1195	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $remote_host = lccrayb \|\| $remote_host = lccrayh \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lcflow \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* \|\| $remote_host = lcxe6 ]]
[1]	1196	then
[622]	1197	if [[ $remote_host = ibmh ]]
[1]	1198	then
	1199	return_queue=c1
[693]	1200	elif [[ $remote_host = ibmkisti ]]
	1201	then
	1202	return_queue=class.1-2
[622]	1203	elif [[ $remote_host = ibmku ]]
	1204	then
	1205	return_queue=sdbg2
[1]	1206	elif [[ $remote_host = ibms ]]
	1207	then
	1208	return_queue=p_normal
[1274]	1209	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
[1255]	1210	then
	1211	return_queue=dataq
[1468]	1212	elif [[ $remote_host = lcxe6 ]]
	1213	then
	1214	return_queue=debug
[1040]	1215	elif [[ $remote_host = lckiaps ]]
	1216	then
	1217	return_queue=express
[1099]	1218	elif [[ $remote_host = lckyuh ]]
	1219	then
	1220	return_queue=cx-single
[1090]	1221	elif [[ $remote_host = lckyut ]]
	1222	then
	1223	return_queue=cx-single
[1]	1224	else
	1225	return_queue=unknown
	1226	fi
	1227
	1228	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1229	then
	1230
[622]	1231	if [[ $remote_host = ibmku ]]
	1232	then
[1289]	1233	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
	1234	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
[622]	1235	else
[1289]	1236	echo "echo \"#!/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
[622]	1237	fi
[1289]	1238	echo "echo \"# @ job_type = serial\" >> scpjob.$identifier" >> $job_to_send
	1239	echo "echo \"# @ job_name = transfer\" >> scpjob.$identifier" >> $job_to_send
	1240	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$identifier" >> $job_to_send
	1241	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$identifier " >> $job_to_send
	1242	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
	1243	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
[312]	1244	if [[ $host != "ibmh" ]]
	1245	then
[1289]	1246	echo "echo \"# @ class = $return_queue\" >> scpjob.$identifier" >> $job_to_send
[312]	1247	fi
[1289]	1248	echo "echo \"# @ image_size = 10\" >> scpjob.$identifier" >> $job_to_send
	1249	echo "echo \"# @ notification = never\" >> scpjob.$identifier" >> $job_to_send
[1]	1250
[1289]	1251	echo "echo \"# @ queue\" >> scpjob.$identifier" >> $job_to_send
	1252	echo "echo \" \" >> scpjob.$identifier" >> $job_to_send
[1]	1253
[1289]	1254	echo "echo \"set -x\" >> scpjob.$identifier" >> $job_to_send
[1468]	1255	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$identifier" >> $job_to_send
[622]	1256	if [[ $remote_host = ibmku ]]
	1257	then
[1289]	1258	echo "echo \"rm scpjob.$identifier\" >> scpjob.$identifier" >> $job_to_send
[622]	1259	fi
[1289]	1260	echo "echo \"exit\" >> scpjob.$identifier" >> $job_to_send
[1]	1261
	1262	elif [[ $remote_host = nech ]]
	1263	then
	1264	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
[1289]	1265	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
[1]	1266	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
	1267	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
	1268	echo "#PBS -j o" >> $job_to_send
	1269	echo " " >> $job_to_send
	1270	echo "set -x" >> $job_to_send
	1271	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
[1468]	1272	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1]	1273	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1274	echo "%%END%%" >> $job_to_send
	1275
[1099]	1276	elif [[ $remote_host = lckyuh ]]
	1277	then
[1289]	1278	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
[1099]	1279	echo "#!/bin/bash" >> $job_to_send
	1280	echo "#PJM -L \"node=1\"" >> $job_to_send
	1281	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
	1282	echo "#PJM --no-stging" >> $job_to_send
	1283	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
	1284	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1285	echo "#PJM -j" >> $job_to_send
	1286	echo " " >> $job_to_send
	1287	echo "export LANG=en_US.UTF-8" >> $job_to_send
	1288	echo "set -x" >> $job_to_send
[1468]	1289	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1099]	1290	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1291	echo "%%END%%" >> $job_to_send
	1292
[1090]	1293	elif [[ $remote_host = lckyut ]]
	1294	then
[1289]	1295	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
[1090]	1296	echo "#!/bin/bash" >> $job_to_send
	1297	echo "#PJM -L \"vnode=1\"" >> $job_to_send
	1298	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
	1299	echo "#PJM --no-stging" >> $job_to_send
	1300	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
	1301	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1302	echo "#PJM -j" >> $job_to_send
	1303	echo " " >> $job_to_send
	1304	echo "export LANG=en_US.UTF-8" >> $job_to_send
	1305	echo "set -x" >> $job_to_send
[1468]	1306	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1090]	1307	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1308	echo "%%END%%" >> $job_to_send
	1309
[1274]	1310	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
[1255]	1311	then
[1289]	1312	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
[1255]	1313	echo "#!/bin/bash" >> $job_to_send
	1314	echo "#PBS -N job_protocol_transfer" >> $job_to_send
	1315	echo "#PBS -l walltime=00:30:00" >> $job_to_send
[1262]	1316	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
[1255]	1317	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1318	echo "#PBS -j oe" >> $job_to_send
	1319	echo " " >> $job_to_send
	1320	echo "set -x" >> $job_to_send
[1468]	1321	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1255]	1322	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1323	echo "%%END%%" >> $job_to_send
	1324
[1099]	1325	elif [[ $remote_host = lcflow ]]
	1326	then
[1289]	1327	echo "cat > scpjob.${identifier}.tmp << %%END%%" >> $job_to_send
[1099]	1328	echo "#!/bin/bash" >> $job_to_send
	1329	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
	1330	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
	1331	echo "SGEPREFIX -cwd" >> $job_to_send
	1332	echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
[1202]	1333	echo "SGEPREFIX -l h_vmem=500M" >> $job_to_send
	1334	echo "SGEPREFIX -l excl_flow=false" >> $job_to_send
[1099]	1335	echo "SGEPREFIX -j y" >> $job_to_send
[1289]	1336	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$identifier" >> $job_to_send
[1099]	1337	echo " " >> $job_to_send
	1338	echo "set -x" >> $job_to_send
	1339	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
	1340	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
	1341	echo "" >> $job_to_send
[1468]	1342	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1099]	1343	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
[1289]	1344	echo "rm -f scpjob.${identifier}" >> $job_to_send
[1099]	1345	echo "%%END%%" >> $job_to_send
[1289]	1346	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${identifier}.tmp > scpjob.${identifier}" >> $job_to_send
	1347	echo "rm -f scpjob.${identifier}.tmp" >> $job_to_send
[1468]	1348	elif [[ $remote_host = lcxe6 ]]
	1349	then
	1350	echo "cat > scpjob.${identifier} << %%END%%" >> $job_to_send
	1351	echo "#!/bin/ksh" >> $job_to_send
	1352	echo "#PBS -N job_protocol_transfer" >> $job_to_send
	1353	echo "#PBS -l walltime=00:30:00" >> $job_to_send
	1354	echo "#PBS -A $project_account" >> $job_to_send
	1355	echo "#PBS -l mppwidth=1" >> $job_to_send
	1356	echo "#PBS -l mppnppn=1" >> $job_to_send
	1357	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1358	echo "#PBS -j oe" >> $job_to_send
	1359	echo " " >> $job_to_send
	1360	echo "set -x" >> $job_to_send
	1361	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1362	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1363	echo "%%END%%" >> $job_to_send
[1]	1364	else
	1365
[1289]	1366	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
[1]	1367	echo "# @\\\$-q $return_queue" >> $job_to_send
	1368	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
	1369	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
	1370	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
	1371	then
	1372	echo "# @\$-l mpp_p=0" >> $job_to_send
	1373	fi
	1374	echo '# @\$-lF 10mb' >> $job_to_send
	1375	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
	1376	echo '# @\\\$-eo' >> $job_to_send
	1377	echo " " >> $job_to_send
	1378	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1379	then
	1380	echo "set +vx" >> $job_to_send
	1381	echo ". .profile" >> $job_to_send
	1382	fi
	1383	echo "set -x" >> $job_to_send
[1468]	1384	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
[1]	1385	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1386	echo "%%END%%" >> $job_to_send
	1387	fi
	1388
	1389	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1390	then
[1289]	1391	echo "llsubmit scpjob.$identifier" >> $job_to_send
[1274]	1392	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
[1255]	1393	then
[1289]	1394	echo "msub -q $return_queue scpjob.$identifier" >> $job_to_send
[1]	1395	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1396	then
[1289]	1397	echo "qsub -J n scpjob.$identifier" >> $job_to_send
[1]	1398	elif [[ $remote_host = t3es ]]
	1399	then
[1289]	1400	echo "qsub -J n -s /bin/ksh scpjob.$identifier" >> $job_to_send
[1043]	1401	elif [[ $remote_host = lckiaps ]]
	1402	then
[1289]	1403	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
[1468]	1404	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"$submcom ${job_catalog}/scpjob.$identifier\" " >> $job_to_send
[1289]	1405	echo "rm ${job_catalog}/scpjob.$identifier" >> $job_to_send
[1099]	1406	elif [[ $remote_host = lckyu* ]]
[1090]	1407	then
[1468]	1408	echo "scp $PORTOPT scpjob.$identifier ${remote_username}@${remote_address}:job_queue" >> $job_to_send
	1409	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"cd job_queue; $submcom scpjob.$identifier; rm scpjob.$identifier\" " >> $job_to_send
[1099]	1410	elif [[ $remote_host = lcflow ]]
	1411	then
[1289]	1412	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
[1468]	1413	echo "/usr/bin/ssh ${remote_username}@${remote_address} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$identifier\" " >> $job_to_send
[1]	1414	else
[1289]	1415	echo "$submcom scpjob.$identifier" >> $job_to_send
[1]	1416	fi
[1043]	1417	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
[622]	1418	then
[1289]	1419	echo "rm scpjob.$identifier" >> $job_to_send
[622]	1420	fi
[1]	1421	if [[ $remote_host = nech ]]
	1422	then
	1423	echo "cd -" >> $job_to_send
	1424	fi
	1425	else
[1468]	1426	# echo "ftpcopy -d $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1289]	1427	# ??? funktioniert das ÃŒberhaupt noch ???
[1468]	1428	echo "nohup ftpcopy -d -w 15 $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
[1]	1429	fi
	1430	echo "set -x" >> $job_to_send
	1431	echo " ' exit" >> $job_to_send
	1432	echo "set -x" >> $job_to_send
	1433	fi
	1434
	1435
	1436
[1289]	1437	# APPEND THE JOB-FILE (CREATE BY mrun) TO THE JOB-DIRECTIVES GENERATED ABOVE
[1]	1438	cat $file_to_send >> $job_to_send
[69]	1439
[1]	1440	if [[ $remote_host = ibm ]]
	1441	then
	1442	echo " " >> $job_to_send
	1443	echo "exit" >> $job_to_send
	1444	fi
[635]	1445
[1289]	1446	# REMOVE JOB-FILE
[1099]	1447	if [[ $remote_host = lctit \|\| $remote_host = ibmku \|\| $remote_host = lcflow ]]
[69]	1448	then
	1449	echo " " >> $job_to_send
	1450	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
	1451	fi
[1]	1452
	1453
[1289]	1454	# TRANSFER JOB TO THE TARGET HOST (JOB-DIRECTORY)
[1]	1455	if [[ $no_submit = false ]]
	1456	then
	1457	if [[ $remote_host != $local_host ]]
	1458	then
	1459	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
[1289]	1460	if [[ $remote_host = ibms ]] # ssh on ibms cannot handle "~/"
[1]	1461	then
[82]	1462	job_catalog_save=$job_catalog
	1463	job_catalog=job_queue
	1464	elif [[ $remote_host = nech ]]
	1465	then
	1466	job_catalog_save=$job_catalog
	1467	job_catalog=/hpf/b/${remote_user}/job_queue
	1468	fi
[1096]	1469	if [[ $remote_host = nech ]]
[82]	1470	then
[1289]	1471	# FILES CAN ONLY BE TRANSFERED VIA DKRZ'S ARCHIVE-SERVER
[1094]	1472	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
[1]	1473	else
[1468]	1474	scp $PORTOPT $job_to_send ${remote_user}@${remote_address}:${job_catalog}/$job_on_remhost
[1]	1475	fi
[82]	1476	if [[ $? = 1 ]]
	1477	then
	1478	locat=scp; exit
	1479	fi
	1480	if [[ $remote_host = ibms ]]
	1481	then
	1482	job_catalog=$job_catalog_save
	1483	fi
[1]	1484	[[ $verify = true ]] && printf "\n >>> finished\n"
	1485	else
	1486	eval job_catalog=$job_catalog
	1487	cp $job_to_send ${job_catalog}/$job_on_remhost
	1488	fi
	1489
	1490
	1491
[1289]	1492	# START NQS- / LOADLEVELER-JOB
[1]	1493	if [[ $remote_host != $local_host ]]
	1494	then
	1495	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
[635]	1496
[1289]	1497	if [[ $remote_host = ibmku ]]
[1]	1498	then
[1468]	1499	ssh $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
[1099]	1500	elif [[ $remote_host = lcflow ]]
	1501	then
[1468]	1502	/usr/bin/ssh $SSH_PORTOPT $remote_address -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
[1]	1503	else
[1468]	1504	ssh $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
[82]	1505	fi
[1]	1506
	1507	[[ $verify = true ]] && printf " >>> o.k.\n"
	1508	else
	1509	cd $job_catalog
[1289]	1510	if [[ $(echo $local_host \| cut -c1-3) = ibm \|\| $(echo $local_host \| cut -c1-6) = lccray ]]
[1]	1511	then
	1512	eval $submcom $job_on_remhost
[1289]	1513	elif [[ $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyu* ]]
[108]	1514	then
[635]	1515	chmod u+x $job_on_remhost
[108]	1516	eval $submcom $job_on_remhost
[1]	1517	elif [[ $local_host = nech ]]
	1518	then
	1519	if [[ $queue = default ]]
	1520	then
[799]	1521	eval $submcom $job_on_remhost
[1]	1522	else
[799]	1523	eval $submcom -q $queue $job_on_remhost
[1]	1524	fi
	1525	else
	1526	qsub $job_on_remhost
	1527	fi
[622]	1528
[1289]	1529	# JOBFILE MUST NOT BE DELETED ON lctit/ibmku/lcflow. THIS WILL BE DONE
	1530	# AT THE END OF THE JOB
[1099]	1531	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
[622]	1532	then
	1533	rm $job_on_remhost
	1534	fi
[1]	1535	cd - > /dev/null
	1536	fi
	1537	fi
	1538
	1539
	1540
[1289]	1541	# FINAL ACTIONS
[1]	1542	if [[ $no_submit = false ]]
	1543	then
[1099]	1544	rm -f $job_to_send
[1]	1545	fi
[1266]	1546	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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