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source: palm/trunk/SCRIPTS/mrun @ 982

Last change on this file since 982 was 970, checked in by maronga, 12 years ago
mrun updated (automatic restarts were not possible at imuk)
Property svn:keywords set to `Id Rev`
File size: 189.1 KB

Rev	Line
[71]	1	#!/bin/ksh
[503]	2	# mrun - script for running PALM jobs
[169]	3	# $Id: mrun 970 2012-08-06 14:13:29Z maronga $
[1]	4
[503]	5	# Procedure for interactive/batch PALM runs (initial runs and automatic
	6	# restart runs)
[1]	7
[503]	8	# Last changes:
[1]	9	# 03/03/94 - Siggi - Entwicklungsbeginn
	10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
	11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
	12	# zelne Variable exportiert. Dies ist noetig, weil an-
	13	# sonsten irgendein Speicher ueberlaeuft und von mrun
	14	# aufgerufene Programme (z.B. stageout) mit Fehlern
	15	# abbrechen (too many arguments)
	16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
	17	# defaultmaessig im RRZN-Profile eingeschaltet
	18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
	19	# wegfallen
	20	# 25/04/00 - Siggi - Version 1.5
	21	# remote_addres und remote_user in return_addres bzw.
	22	# return_username umbenannt, return_username wird dem
	23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
	24	# Neue Variable remote_username, die beim interaktiven
	25	# mrun-Aufruf zwingend ueber die neue Option -u oder
	26	# in der Konfigurationsdatei angegeben werden muss.
	27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
	28	# Version 1.7
	29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
	30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
	31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
	32	# zu bestimmen; Praeprozessoroptionen haben nun alle
	33	# die Form -Dtext=text, weil auf IBM sonst text durch
	34	# die leere Zeichenkette ersetzt wird
	35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
	36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
	37	# (-D$OMP=OMP) in order to avoid problems with
	38	# OMP_NUM_THREADS
	39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
	40	# tar files, one for each node used
	41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
	42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
	43	# 17/01/05 - Siggi - job for data transfer to local machine now within
	44	# job class c1 (HLRN)
	45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
	46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
	47	# base filename and cycle number
	48	# 16/02/05 - Gerald - hababai validated
	49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
	50	# 29/03/05 - Marcus - berni*-en0 validated
	51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
	52	# 24/04/05 - Siggi - netcdf support on lcmuk
	53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
	54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
	55	# number) can now be used within interactive runs
	56	# 12/05/05 - Siggi - netcdf support on ibm
	57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
	58	# 18/05/05 - Siggi - netcdf support on nec
	59	# 24/05/05 - Siggi - netcdf support on ibms
	60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
	61	# to 30 seconds
	62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
	63	# PATH is temporarily set)
	64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
	65	# caused warnings in the job protocol
	66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
	67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
	68	# removed
	69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
	70	# realized by file attribute trpe
	71	# 28/10/05 - Siggi - if existing, the file extension is output in case
	72	# of missing input file - no job abort in case of
	73	# missing input files with file extensions
	74	# (preliminary solution)
	75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
	76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
	77	# 07/12/05 - Siggi - gallego and elephanta admitted
	78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
	79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
	80	# 20/01/06 - Siggi - cpp directive for ibmy
	81	# 09/02/06 - Siggi - ibmy admitted for batch mode
	82	# 13/04/06 - Siggi - ostria admitted
	83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
	84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
	85	# optimization of OpenMP runs (option stacksize is
	86	# necessary for large gridpoint numbers because
	87	# otherwise a segmentation fault occurs)
	88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
	89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
	90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
	91	# 20/09/06 - Marcus - add DVRP library on nech
	92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
	93	# on local NAMELIST file ENVPAR
	94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
	95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
	96	# 06/02/07 - Siggi - add DVRP library on lcmuk
	97	# 07/02/07 - Siggi - revision of source code handling, source code is
	98	# now expected in directory given by source_path and
	99	# not in the current working directory, source code
	100	# files provided in add_source_path are allways
	101	# compiled, source code to be compiled is allways
	102	# sampled in SOURCES_FOR_RUN_$fname which is a
	103	# subdirectory of the current working directory,
[5]	104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
[1]	105	# adapted for RIAM (neck)
[5]	106	# bugfix for cycle number of output file (extout)
	107	# all hpmuk-related code removed
[14]	108	# 14/02/07 - Siggi - dvrp support for neck added
[21]	109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
[26]	110	# mrun_path replaced by PALM_BIN,
	111	# all machines are calling interpret_config.x
[66]	112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
	113	# output
[69]	114	# 16/03/07 - Siggi - adjustments for lctit
[78]	115	# 29/03/07 - Siggi - global revision transfered to batch job by new
	116	# option -G
[82]	117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
	118	# + netcdf/dvrp-options are read from configuration
	119	# file, host identifier (local_host) is read from
	120	# config file, code related to ftp filetransfer
	121	# removed (incl. option -f)
[97]	122	# 19/06/07 - Siggi - time limit for cdata jobs increased
[102]	123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
	124	# if new option -Y (coupling) is given,
	125	# output of executables to aout_output removed,
	126	# messages are immediately written to stdout instead
[108]	127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
	128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
	129	# variables out to the nodes in coupled mode -disabled-
	130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
[109]	131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
	132	# environment variables out to the nodes in coupled mode
[118]	133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
	134	# suggestions
[122]	135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
	136	# argument -g group_number, admit all sla* node_usage
	137	# queues
[129]	138	# 30/10/07 - Marcus - further adjustments for queues on lctit
[149]	139	# 14/02/08 - Bjoern - link of restart files with long file name possible
	140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
	141	# true, mrun tries "ln -f" on local output and resorts
	142	# to "cp" or "cp -r" on error
[164]	143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
	144	# which allows the user to choose his own job catalog
	145	# by setting job_catalog in the configuration file
	146	# (default is ~/job_queue),
[172]	147	# workaround for mpiexec with -env option,
[164]	148	# adjustments for lcxt4 (Bergen Center for Computational
	149	# Science)
[183]	150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
	151	# true, mrun tries "ln -f" on local input and resorts
	152	# to "cp" or "cp -r" on error
[180]	153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
[179]	154	# 14/07/08 - Siggi - adjustments for lcsgih
[188]	155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
[204]	156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
[210]	157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
	158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
	159	# argument
[211]	160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
	161	# file
	162	# 11/11/08 - Siggi - rules for using user code files changed: user
	163	# code splitted into one file per subroutine,
	164	# user can provide his/her own makefile, only
	165	# default source-code filenames are allowed
[215]	166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
[221]	167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
	168	# with environment variable mpilib
[223]	169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
	170	# using environment variable totalview
[246]	171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
	172	# interactive runs
[253]	173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
[260]	174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
	175	# dvr streaming server is automatically started using
	176	# new variable dvr_server and a configuration file
	177	# .dvrserver.config,
[261]	178	# processing of dvr output files using new script
	179	# process_dvr_output implemented, in order to make
	180	# dvr application more user friendly
[265]	181	# 20/03/09 - Marcus - update of n1ge command for lctit
[291]	182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
	183	# to be followed by a coupled atmosphere-ocean run
[343]	184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
	185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
[352]	186	# 08/07/09 - Siggi - default value for email_notification is none,
	187	# option -e added to subjob
[359]	188	# 19/08/09 - Marcus - MPI debug option
[362]	189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
[367]	190	# 25/08/09 - BjornM - adpated for lck
[369]	191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
[372]	192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
[397]	193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
	194	# switches on archiving, archiving on SGI-ICE enabled
[416]	195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
	196	# adjustment for special1q
	197	# 18/12/09 - Carolin- modification of archiving (permq)
[440]	198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
[475]	199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
	200	# implemented
[493]	201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
	202	# file (modules)
[503]	203	# 02/03/10 - Siggi - for each block in the configuration file, separate
	204	# utility programs are used, combine_plot_fields is
	205	# directly called and must not be given by an output
	206	# command in the configuration file any more
[540]	207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
	208	# lcsgih/lcsgib is done using the names
	209	# hicegate0/bicegate0 instead of the IP addresses
[544]	210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
[555]	211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
[622]	212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
	213	# has now argument threads_per_task
	214	# adjustments for Kyushu Univ. (lcrte, ibmku)
[635]	215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
	216	# institute of technology (lctit)
[759]	217	# 23/12/10 - Micha - different number of processors in ocean and
	218	# atmosphere is now allowed
[678]	219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
	220	# usage
[696]	221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
[693]	222	# usage, totalview usage extended
[721]	223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
	224	# 03/04/11 - Micha - added lckordi
	225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
[738]	226	# 17/08/11 - Siggi - extensions for impi library
[759]	227	# 18/08/11 - Siggi - bugfix for local append of output files with suffix
	228	# (.nc)
[746]	229	# 18/08/11 - Marcus - support for Linux OS with German locale
[759]	230	# - properly report hosts on general Linux clusters
[755]	231	# 29/08/11 - BjornW - adapted for lcflow (ForWind cluster in Oldenburg)
[759]	232	# 29/08/11 - Carolin- initiating restart-run: adjustment of the path at
	233	# IMUK
	234	# 15/09/11 - Siggi - new option -w tp set the maximum number of parallel
	235	# io streams, option -T is obligatory from now on
[807]	236	# 25/01/12 - BjornM - a namelist file check prior to the model run has
	237	# been implemented (check_namelist_files).
	238	# New option -z can be used to skip the check
[815]	239	# 03/02/12 - BjornM - namelist file check temporary disabled
	240	# until severel bugs are fixed
[818]	241	# 08/02/12 - BjornM - bugfixes: skipping namelist file check in case of
	242	# restart runs. check is now possible with topography
	243	# and the -v (silent) option is considered
[821]	244	# 14/02/12 - BjornM/- bugfix: removed slash in \$queue, changed default
	245	# Farah queue for lcsgi to testq, since bigq is not
	246	# available on ice1
[823]	247	# 16/02/12 - BjornM - bugfix: replaced $localhost by $host in the ENVPAR
	248	# file, which is generated for the namelist file check
[824]	249	# 17/02/12 - Siggi - -z included in description of options (mrun ?)
[837]	250	# 22/02/12 - Siggi - -s info updated
[838]	251	# 22/02/12 - Siggi - case "-s WP" removed
[841]	252	# 28/02/12 - BjornM - further adjustments for namelist file check
[847]	253	# 09/03/12 - Siggi - -T option not obligatory for lcflow
[848]	254	# 12/03/12 - Siggi - tasks_per_node divisor check not for lcflow
[858]	255	# 21/03/12 - Matthias - default compiler on ibmh changed
[892]	256	# 02/05/12 - Bjoern - lcxt4 is now lcxe6, adjustments for lcxe6,
	257	# bugfixes for the parameter file check, initial
	258	# commands on ssh calls sourced out to .mrun.config
[920]	259	# 05/06/12 - Bjoern - bugfixes for the parameter file check on lcxe6.
	260	# combine_plot_fields can be switched off by the
	261	# new mrun option -Z
[931]	262	# 08/06/12 - Bjoern - max_pr_user enabled for the namelist file check,
	263	# sleep commands are now disabled in silent mode (-v)
[970]	264	# 06/08/12 - Bjoern - update: system update at imuk now requires (new)
	265	# initial shell commands on ssh calls (automatic
	266	# restart runs were not possible)
[1]	267
	268	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	269
	270	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	271	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	272	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	273
	274	AddFilenames=""
	275	additional_conditions=""
	276	add_source_path=""
	277	afname=""
	278	archive_save=true
	279	archive_system=none
[807]	280	check_namelist_files=true
[920]	281	combine_plot_fields=true
[1]	282	compiler_name=""
	283	cond1=""
	284	cond2=""
	285	config_file=.mrun.config
[206]	286	coupled_dist=""
	287	coupled_mode="mpi1"
[1]	288	cpp_opts=""
[82]	289	cpp_options=""
[1]	290	cpumax=0
	291	cpurest=0
	292	delete_temporary_catalog=true
	293	do_batch=false
	294	do_compile=true
	295	do_remote=false
	296	do_stagein=true
	297	do_stageout=true
	298	do_trace=false
[352]	299	email_notification="none"
[1]	300	exclude=""
	301	executable=""
	302	execution_error=false
[67]	303	fimm=false
[1]	304	fname=test
	305	fromhost=""
[78]	306	global_revision=""
[122]	307	group_number=none
[1]	308	host=""
	309	host_file=""
	310	hp=""
	311	ignore_archive_error=false
	312	input_list=""
	313	interpreted_config_file=""
[164]	314	job_catalog="~/job_queue"
[1]	315	job_on_file=""
	316	keep_data_from_previous_run=false
[183]	317	link_local_input=false
[149]	318	link_local_output=false
[1]	319	localhost_realname=$(hostname)
	320	local_compile=false
[260]	321	local_dvrserver_running=.FALSE.
[1]	322	locat=normal
	323	mainprog=""
	324	makefile=""
[759]	325	max_par_io_str=""
[1]	326	mc=$0
	327	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	328	do
	329	mc=`echo $mc \| cut -f2- -d"/"`
	330	done
[493]	331	module_calls=""
[1]	332	mrun_script_name=$mc
[82]	333	netcdf_inc=""
	334	netcdf_lib=""
[1]	335	netcdf_support=false
	336	node_usage=default
	337	numprocs=""
[206]	338	numprocs_atmos=0
	339	numprocs_ocean=0
[1]	340	OOPT=""
	341	openmp=false
	342	output_list=""
	343	package_list=""
	344	punkte="..........................................................."
	345	queue=none
	346	read_from_config=""
[5]	347	restart_run=false
[622]	348	if [[ `hostname` = rte10 ]]
[1]	349	then
[622]	350	return_addres=133.5.185.60
[693]	351	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
	352	elif [[ `hostname` = climate0 ]]
	353	then
	354	return_addres=165.132.26.68
	355	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
[622]	356	else
	357	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	358	fi
	359	return_password=""
	360	return_username=$LOGNAME
	361	remotecall=false
	362	remote_username=""
[102]	363	run_coupled_model=false
[1]	364	run_mode=""
	365	scirocco=false
[397]	366	store_on_archive_system=false
[1]	367	striche=" ----------------------------------------------------------------------------"
	368	silent=false
	369	source_list=""
	370	source_path=SOURCE
	371	tasks_per_node=""
	372	threads_per_task=1
	373	tmpcreate=false
	374	tmp_data_catalog=""
	375	transfer_problems=false
	376	usern=$LOGNAME
[377]	377	use_openmp=false
[1]	378	working_directory=`pwd`
	379	TOPT=""
	380	XOPT=""
	381	zeit=$( date \| cut -c 12-19 )
	382
	383	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	384	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	385
[66]	386	typeset -R30 calltime
[1]	387	typeset -L20 spalte1
	388	typeset -L40 spalte2
	389	typeset -L60 spalte3
	390	typeset -L35 string1=`date`
	391	typeset -L12 string2=$usern
	392	typeset -L12 string3=$localhost_realname
	393	typeset -L12 string4
	394	typeset -L12 string5
[201]	395	typeset -L30 version="MRUN 2.0 Rev$Rev: 970 $"
[1]	396
	397
	398
	399	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	400	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	401
	402	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	403	# EXPORTIERT WERDEN
	404	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	405	export group_number input_list memory numprocs output_list queue run_mode
[1]	406
	407
	408
	409	# FEHLERBEHANDLUNG
	410	# BEI EXIT:
[83]	411	trap 'rm -rf $working_directory/tmp_mrun
[69]	412	if [[ $locat != localhost ]]
[1]	413	then
[22]	414	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	415	# then
	416	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	417	#MRUN-calls on $localhost
	418	#
	419	#date and time user localhost remotehost termination mrun-command
	420	#--------------------------------------------------------------------------------------------------------------------
	421	#%STATEND%
	422	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	423	# fi
	424	#
	425	# # EINTRAG IN DIE STATISTIK-DATEI
	426	# string4=$host
	427	# string5=$locat
	428	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	429	# then
	430	# if [[ $do_batch = true ]]
	431	# then
	432	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	433	# else
	434	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	435	# fi
	436	# fi
[69]	437	echo " " > /dev/null
[1]	438	fi
	439
	440	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	441	then
	442
	443	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	444	(( i = 0 ))
	445	while (( i < iec ))
	446	do
	447	(( i = i + 1 ))
	448	printf "\n *** Execution of ERROR-command:\n"
	449	printf " >>> ${err_command[$i]}\n"
	450	eval ${err_command[$i]}
	451	done
	452	if [[ -n $interpreted_config_file ]] then
	453	rm -rf $interpreted_config_file
	454	fi
[71]	455	if [[ -n .mrun_environment ]] then
	456	rm -rf .mrun_environment
	457	fi
[1]	458	if [[ $tmpcreate = true ]]
	459	then
	460	printf "\n *** Contents of \"$TEMPDIR\":\n"
	461	ls -al; cd
	462	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	463	fi
[260]	464	if [[ "$dvrserver_id" != "" ]]
	465	then
	466	echo "+++ killing dvrserver_id=$dvrserver_id"
	467	kill $dvrserver_id
	468	fi
[1]	469	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	470	then
	471	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	472	fi
	473	printf "\n\n+++ MRUN killed \n\n"
	474	elif [[ $locat != control_c ]]
	475	then
	476	printf "\n\n --> all actions finished\n\n"
	477	printf " Bye, bye $usern !!\n\n"
	478	fi' exit
	479
	480
	481	# BEI TERMINAL-BREAK:
[83]	482	trap 'rm -rf $working_directory/tmp_mrun
[807]	483	rm -rf $working_directory/tmp_check_namelist_files
[69]	484	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	485	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	486	then
	487	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	488	fi
[260]	489	if [[ "$dvrserver_id" != "" ]]
	490	then
	491	echo "+++ killing dvrserver_id=$dvrserver_id"
	492	kill $dvrserver_id
	493	fi
[1]	494	printf "\n+++ MRUN killed by \"^C\" \n\n"
	495	locat=control_c
	496	exit
	497	' 2
	498
	499
[22]	500	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	501	# BEEN SET
	502	if [[ "$PALM_BIN" = "" ]]
	503	then
	504	printf "\n +++ environment variable PALM_BIN has not been set"
	505	printf "\n please set it to the directory where the PALM scripts are located"
	506	locat=palm_bin; exit
	507	fi
[180]	508	export PATH=$PALM_BIN:$PATH
[22]	509
	510
[1]	511
	512	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	513	# FUER FOLGEJOBS BENOETIGT WIRD
[920]	514	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
[1]	515	do
	516	case $option in
	517	(a) afname=$OPTARG;;
[397]	518	(A) store_on_archive_system=true; mc="$mc -A";;
[1]	519	(b) do_batch=true; mc="$mc -b";;
	520	(B) delete_temporary_catalog=false; mc="$mc -B";;
	521	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	522	(C) restart_run=true; mc="$mc -C";;
[1]	523	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	524	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	525	(F) job_on_file="-D"; mc="$mc -F";;
[122]	526	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	527	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	528	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	529	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	530	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	531	(I) ignore_archive_error=true; mc="$mc -I";;
	532	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	533	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	534	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	535	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	536	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	537	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
[622]	538	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
[1]	539	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	540	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	541	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	542	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	543	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	544	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	545	(S) read_from_config=false; mc="$mc -S";;
	546	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
[759]	547	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
[1]	548	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	549	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	550	(v) silent=true; mc="$mc -v";;
[759]	551	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
[1]	552	(x) do_trace=true;set -x; mc="$mc -x";;
	553	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	554	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	555	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[807]	556	(z) check_namelist_files=false; mc="$mc -z";;
[920]	557	(Z) combine_plot_fields=false; mc="$mc -Z";;
[1]	558	(\?) printf "\n +++ unknown option $OPTARG \n"
	559	printf "\n --> type \"$0 ?\" for available options \n"
	560	locat=parameter;exit;;
	561	esac
	562	done
	563
	564
	565	# EVTL. POSITIONSPARAMETER EINLESEN
	566	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	567	shift OPTIND-1
	568
	569
	570	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	571	if [[ "$1" = "?" ]]
	572	then
	573	(printf "\n *** mrun can be called as follows:\n"
[920]	574	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
[1]	575	printf "\n Description of available options:\n"
	576	printf "\n Option Description Default-Value"
	577	printf "\n -a base name of input files equiv. -d"
[400]	578	printf "\n -A archiving when using file-attribute fl"
[1]	579	printf "\n -b batch-job on local machine ---"
	580	printf "\n -B do not delete temporary directory at end ---"
	581	printf "\n -c configuration file .mrun.config"
	582	printf "\n -d base name of files attached to program test"
	583	printf "\n -D preprocessor(cpp)-directives \"\" "
	584	printf "\n -F create remote job file only ---"
	585	printf "\n -h execution host $localhost_realname"
	586	printf "\n -i INPUT control list \"\" "
	587	printf "\n -I archiving errors of previous batch-jobs"
	588	printf "\n will be ignored"
	589	printf "\n -k keep data from previous run"
	590	printf "\n -K additional conditions for controling"
	591	printf "\n usage of conditional code and"
	592	printf "\n env-variables in configuration file \"\" "
	593	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	594	printf "\n -M Makefile name Makefile"
	595	printf "\n -n node usage (shared/not_shared) depending on -h"
	596	printf "\n -o OUTPUT control list \"\" "
	597	printf "\n -O use OpenMP ---"
	598	printf "\n -p software package list \"\" "
	599	printf "\n -q queue \"$queue\" "
	600	printf "\n -r run control list (combines -i -o) \"\" "
	601	printf "\n -s filenames of routines to be compiled \"\" "
	602	printf "\n must end with .f, .f90, .F, or .c !"
	603	printf "\n use \"..\" for more than one file and wildcards"
[837]	604	printf "\n -s LM compiles all locally modified files"
[1]	605	printf "\n -S config file interpreted by shellscript ---"
	606	printf "\n -t allowed cpu-time in seconds (batch) 0"
	607	printf "\n -T tasks per node depending on -h"
	608	printf "\n -u username on remote machine \"\" "
	609	printf "\n -v no prompt for confirmation ---"
[759]	610	printf "\n -w maximum parallel io streams as given by -X"
[1]	611	printf "\n -x tracing of mrun for debug purposes ---"
	612	printf "\n -X # of processors (on parallel machines) 1"
[291]	613	printf "\n -y add appendix \"_O\" to all local output"
	614	printf "\n files (ocean precursor runs followed by"
	615	printf "\n coupled atmosphere-ocean runs) ---"
[206]	616	printf "\n -Y run coupled model, \"#1 #2\" with"
	617	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[920]	618	printf "\n -z disable a priori parameter file check ---"
	619	printf "\n -Z skip combine_plot_fields at the end of "
	620	printf "\n the simulation ---"
[1]	621	printf "\n "
	622	printf "\n Possible values of positional parameter <modus>:"
	623	printf "\n \"?\" - this outline \n\n") \| more
	624	exit
	625	elif [[ "$1" != "" ]]
	626	then
	627	printf "\n +++ positional parameter $1 unknown \n"
	628	locat=parameter; exit
	629	fi
	630
	631
	632
	633	# KURZE STARTMELDUNG
	634	printf "\n*** $version "
	635	printf "\n will be executed. Please wait ..."
	636
	637
[82]	638
	639	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	640	if [[ ! -f $config_file ]]
	641	then
	642	printf "\n\n +++ configuration file: "
	643	printf "\n $config_file"
	644	printf "\n does not exist"
	645	locat=connect; exit
	646	fi
	647
	648
	649	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	650	line=""
	651	grep "%host_identifier" $config_file > tmp_mrun
	652	while read line
	653	do
[206]	654	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	655	then
	656	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	657	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	658	if [[ $localhost_realname = $HOSTNAME ]]
[82]	659	then
	660	localhost=$host_identifier
	661	break
	662	fi
	663	fi
	664	done < tmp_mrun
	665
	666	if [[ "$localhost" = "" ]]
	667	then
	668	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	669	printf "\n for local host \"$localhost_realname\"."
	670	printf "\n Please add line"
	671	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	672	printf "\n to the configuration file."
	673	locat=localhost; exit
	674	fi
	675
	676
	677	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	678	case $localhost_realname in
[397]	679	(r1\|r2\|h01\|b01) archive_system=tivoli;;
[82]	680	(cs*) archive_system=ut;;
	681	(fimm.bccs.uib.no) fimm=true;;
	682	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	683	(scirocco) scirocco=true;;
	684	esac
	685
	686
	687
[1]	688	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	689	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	690	[[ "$afname" = "" ]] && afname=$fname
	691
	692
	693	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	694	if [[ "$run_mode" != "" ]]
	695	then
	696	input_list="$input_list $run_mode"
	697	output_list="$output_list $run_mode"
	698	fi
	699
	700
	701	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	702	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	703	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	704	# STARTET)
	705	if [[ "$fromhost" = "" ]]
	706	then
	707	fromhost=$localhost
	708	fi
	709
	710
	711	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	712	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	713	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	714	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	715	if [[ -n $host && "$host" != $localhost ]]
	716	then
	717	do_batch=true
	718	do_remote=true
	719	case $host in
[892]	720	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckordi) true;;
[1]	721	(*) printf "\n"
[83]	722	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	723	printf "\n is not available"
[1]	724	locat=nqs; (( iec = 0 )); exit;;
	725	esac
	726	else
	727	host=$localhost
	728	fi
	729
	730
	731	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	732	if [[ -n $additional_conditions ]]
	733	then
[69]	734	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	735	cond1=`echo $additional_conditions \| cut -d" " -f1`
	736	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	737	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	738	if [[ -n $dummy ]]
	739	then
	740	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	741	locat=options; exit
	742	fi
[503]	743	block=_$cond1
	744	[[ -n $cond2 ]] && block=${block}_$cond2
[1]	745	fi
	746
	747
[206]	748	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	749	if [[ $run_coupled_model = true ]]
	750	then
	751
	752	if [[ -n $coupled_dist ]]
	753	then
	754
	755	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	756	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	757
	758	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	759	then
	760
	761	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	762	printf "\n PEs (total) : $numprocs"
	763	printf "\n PEs (atmosphere): $numprocs_atmos"
	764	printf "\n PEs (ocean) : $numprocs_ocean"
	765	locat=coupling; exit
	766
	767	fi
	768
	769	else
	770
	771	(( numprocs_ocean = $numprocs / 2 ))
	772	(( numprocs_atmos = $numprocs / 2 ))
	773
	774	fi
	775	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	776
	777	# GET coupled_mode FROM THE CONFIG FILE
	778	line=""
	779	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	780	while read line
	781	do
	782	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
	783	then
	784	coupled_mode="mpi2"
	785	fi
	786	done < tmp_mrun
	787
	788	fi
	789
	790
[1]	791	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	792	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	793	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	794	then
	795	if [[ $ignore_archive_error = false ]]
	796	then
	797	printf "\n +++ data archiving of previous run failed"
	798	printf "\n see directory \~/job_queue on remote machine"
	799	locat=archive; exit
	800	else
	801	printf "\n +++ warning: data archiving in a previous run failed"
	802	printf "\n MRUN continues, trying to get backup copy"
	803	fi
	804	fi
	805
	806
	807
	808	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	809	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	810	if [[ "$read_from_config" = false ]]
	811	then
	812
	813	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	814	while read zeile
	815	do
	816	[[ $silent = false ]] && printf "."
	817
	818
	819	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	820	# ERSETZEN
	821	eval zeile=\"$zeile\"
	822
	823
	824	# INTERPRETATION DER ZEILE
[21]	825	if [[ "$(echo $zeile)" = "" ]]
[1]	826	then
[21]	827	# LEERZEILE, KEINE AKTION
	828	continue
[1]	829
[21]	830	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	831	then
	832
[1]	833	# ZEILE IST KOMMENTARZEILE
	834	true
	835
	836	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	837	then
	838
	839	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	840	zeile=$(echo $zeile \| cut -c2-)
[69]	841	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	842	var=`echo $zeile \| cut -d" " -f1`
	843	value=`echo $zeile \| cut -d" " -s -f2`
	844	for_host=`echo $zeile \| cut -d" " -s -f3`
	845	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	846	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	847
	848	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	849	then
	850
	851	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	852	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	853	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	854
	855
	856	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	857	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	858	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	859	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	860	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	861	# KONFIGURATIONSDATEI
	862	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	863	then
	864	eval $var=\$value
	865
	866	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	867	if [[ $do_trace = true ]]
	868	then
	869	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	870	fi
	871	fi
	872
	873	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	874	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	875	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	876	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	877	if [[ $var = host ]]
	878	then
	879	if [[ -n $host && "$host" != $localhost ]]
	880	then
	881	do_batch=true
	882	do_remote=true
	883	case $host in
[892]	884	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckordi) true;;
[83]	885	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	886	printf "\n is not available"
[1]	887	locat=nqs; exit;;
	888	esac
	889	else
	890	host=$localhost
	891	fi
	892	fi
	893
	894	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	895	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	896	# DEN PROGRAMMEN BENOETIGT WERDEN
	897	export $var
	898	fi
	899
	900
	901
	902
	903	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	904	then
	905
	906	# ZEILE DEFINIERT ERROR-KOMMANDO
	907	(( iec = iec + 1 ))
	908	zeile=$(echo $zeile \| cut -c4-)
	909	err_command[$iec]="$zeile"
	910
	911	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	912	then
	913
	914	# ZEILE DEFINIERT INPUT-KOMMANDO
	915	(( iic = iic + 1 ))
	916	zeile=$(echo $zeile \| cut -c4-)
	917	in_command[$iic]="$zeile"
	918
	919	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	920	then
	921
	922	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	923	(( ioc = ioc + 1 ))
	924	zeile=$(echo $zeile \| cut -c4-)
	925	out_command[$ioc]="$zeile"
	926
	927	else
	928
	929	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	930	# s2a: in/out - Feld
	931	# s2b: loc - Feld (optional)
	932	# s2c: tr/ar - Feld (optional)
[69]	933	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	934	s1=`echo $zeile \| cut -d" " -f1`
	935	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	936	s2a=$(echo $s2 \| cut -d":" -f1)
	937	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	938	then
	939	s2b=""
	940	s2c=""
	941	else
[69]	942	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	943	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	944	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	945	fi
[69]	946	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	947	s3=`echo $zeile \| cut -d" " -f3`
	948	s4=`echo $zeile \| cut -d" " -s -f4`
	949	s5=`echo $zeile \| cut -d" " -s -f5`
	950	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	951
	952
	953	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	954	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	955	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	956	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	957	# HANDEN SEIN MUSS (D.H. s2b = loc)
	958	IFSALT="$IFS"; IFS="$IFS:"
	959	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	960	then
	961	found=false
	962	for actual in $input_list
	963	do
	964	for formal in $s3
	965	do
	966	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	967	done
	968	done
	969	if [[ $found = true ]]
	970	then
	971	(( iin = iin + 1 ))
	972	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	973	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	974	extin[$iin]=$s6
	975	fi
	976	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	977	then
	978	found=false
	979	for actual in $output_list
	980	do
	981	for formal in $s3
	982	do
	983	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	984	done
	985	done
	986	if [[ $found = true ]]
	987	then
	988	(( iout = iout + 1 ))
	989	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	990	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	991	fi
	992	elif [[ "$s2a" != in && "$s2a" != out ]]
	993	then
	994	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	995	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	996	locat=connect; exit
	997	fi
	998	IFS="$IFSALT"
	999	fi
	1000	done < $config_file
	1001
	1002	else
	1003
	1004
	1005	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	1006	[[ $silent = false ]] && printf "..."
	1007	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	1008	export interpreted_config_file=.icf.$RANDOM
	1009
	1010
[69]	1011
	1012	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	1013	# VERFUEGUNG STELLEN
	1014	cat > .mrun_environment << %%END%%
	1015	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	1016	config_file = '$config_file', do_remote = '$do_remote',
	1017	do_trace = '$do_trace', host = '$host',
	1018	input_list = '$input_list', icf = '$interpreted_config_file',
	1019	localhost = '$localhost', output_list = '$output_list' /
	1020
	1021	%%END%%
	1022
	1023	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	1024	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	1025	mrun_memory=$memory
[127]	1026	mrun_group_number=$group_number
[69]	1027	mrun_cpumax=$cpumax
	1028	mrun_numprocs=$numprocs
	1029
[251]	1030	if [[ $localhost_realname = "sx-fep" ]]
[66]	1031	then
[251]	1032	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	1033	else
[503]	1034
	1035	if [[ "$host" != $localhost ]]
	1036	then
	1037
	1038	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
	1039	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
	1040	if [[ $? != 0 ]]
	1041	then
	1042	printf "\n\n +++ no interpret_config found"
	1043	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
	1044	locat=interpret_config; exit
	1045	fi
	1046	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
	1047	$interpret_config_executable
	1048
	1049	else
	1050
	1051	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
	1052	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
	1053	then
	1054	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
	1055	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
	1056	locat=interpret_config; exit
	1057	else
	1058	interpret_config${block}.x
	1059	fi
	1060
	1061	fi
[66]	1062	fi
[71]	1063	rm .mrun_environment
[1]	1064
[71]	1065
[1]	1066	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	1067	chmod u+x $interpreted_config_file
	1068	export PATH=$PATH:.
	1069	. $interpreted_config_file
[71]	1070	rm $interpreted_config_file
[1]	1071
[71]	1072
[69]	1073	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[759]	1074	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	1075	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[759]	1076	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	1077	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
	1078	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
	1079	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
[69]	1080
[1]	1081	fi
	1082
	1083
	1084	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	1085	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	1086	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	1087	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	1088	if [[ "$SOURCES_COMPLETE" = "" ]]
	1089	then
	1090
	1091	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	1092	# VEREINBART WURDE
	1093	source_path=""
	1094	line=""
	1095	grep "%source_path" $config_file > tmp_mrun
	1096	while read line
	1097	do
	1098	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1099	then
	1100	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	1101	then
	1102	global_source_path=`echo $line \| cut -d" " -f2`
	1103	fi
	1104	fi
	1105	done < tmp_mrun
	1106
	1107	line=""
	1108	found=false
	1109	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	1110	while read line
	1111	do
	1112	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1113	then
	1114	if [[ $found = true ]]
	1115	then
	1116	printf "\n\n +++ more than one source path found in configuration file"
	1117	printf "\n for local host \"$localhost\" "
	1118	locat=source_path; exit
	1119	fi
	1120	source_path=`echo $line \| cut -d" " -f2`
	1121	found=true
	1122	fi
	1123	done < tmp_mrun
	1124	rm tmp_mrun
	1125
	1126	if [[ "$source_path" = "" ]]
	1127	then
	1128	if [[ "$global_source_path" != "" ]]
	1129	then
	1130	source_path=$global_source_path
	1131	else
	1132	printf "\n\n +++ no source path found in configuration file"
	1133	printf "\n for local host \"$localhost\" "
	1134	locat=source_path; exit
	1135	fi
	1136	fi
	1137	eval source_path=$source_path
	1138
	1139	if [[ ! -d $source_path ]]
	1140	then
	1141	printf "\n\n +++ source path \"$source_path\" on local host"
	1142	printf "\n \"$localhost\" does not exist"
	1143	locat=source_path; exit
	1144	fi
	1145
	1146	fi
	1147
	1148
[78]	1149	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	1150	# DURCH OPTION -G MITGETEILT)
[693]	1151	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
[78]	1152	then
	1153	global_revision=`svnversion $source_path 2>/dev/null`
	1154	global_revision="Rev: $global_revision"
	1155	fi
[1]	1156
[78]	1157
[1]	1158	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1159	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1160	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1161	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1162	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1163	if [[ -n $host && "$host" != $localhost ]]
	1164	then
	1165	do_batch=true
	1166	do_remote=true
	1167	case $host in
[892]	1168	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckordi) true;;
[1]	1169	(*) printf "\n"
[83]	1170	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1171	printf "\n is not available"
[1]	1172	locat=nqs; (( iec = 0 )); exit;;
	1173	esac
	1174	else
	1175	host=$localhost
	1176	fi
	1177
	1178
	1179	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1180	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1181	then
	1182
	1183	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1184	if [[ ! -n $numprocs ]]
	1185	then
	1186	printf "\n"
	1187	printf "\n +++ option \"-K parallel\" requires additional specification"
	1188	printf "\n of the number of processors to be used by"
	1189	printf "\n mrun-option \"-X\" or by environment-variable"
	1190	printf "\n \"numprocs\" in the configuration file"
	1191	locat=numprocs; (( iec = 0 )); exit
	1192	fi
	1193
	1194	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1195	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1196	# GESAMTPROZESSORANZAHL IST
[847]	1197	if [[ "$tasks_per_node" = "" && $host != lcflow ]]
[1]	1198	then
[759]	1199	printf "\n"
	1200	printf "\n +++ option \"-T\" (tasks per node) is missing"
	1201	printf "\n set -T option or define tasks_per_node in the config file"
	1202	locat=tasks_per_node; (( iec = 0 )); exit
	1203	fi
[848]	1204	if [[ $host != lcflow ]]
[759]	1205	then
[848]	1206	(( ival = $tasks_per_node ))
	1207	(( pes = numprocs ))
	1208	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1209	# then
	1210	# (( pes = pes - 1 ))
	1211	# fi
	1212	(( ii = pes / ival ))
	1213	if (( pes - ii * ival > 0 ))
	1214	then
	1215	printf "\n"
	1216	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1217	printf "\n divisor of the total number of processors (option \"-X\")"
	1218	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1219	locat=tasks_per_node; (( iec = 0 )); exit
	1220	fi
[1]	1221	fi
	1222
[759]	1223
[1]	1224	# IBMY HAT NUR EINEN KNOTEN
	1225	if [[ $host = ibmy ]]
	1226	then
	1227	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1228	then
	1229	printf "\n"
	1230	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1231	printf "\n total number of processors (option \"-X\")"
	1232	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1233	locat=tasks_per_node; (( iec = 0 )); exit
	1234	fi
	1235	fi
	1236
[377]	1237
	1238	# SETTINGS FOR SUBJOB-COMMAND
[622]	1239	TOPT="-T $tasks_per_node"
[1]	1240	OOPT="-O $threads_per_task"
	1241
	1242	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1243	if [[ "$tasks_per_node" != "" ]]
	1244	then
	1245	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1246	fi
	1247
	1248	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1249	# SETZEN
	1250	if [[ $node_usage = default ]]
	1251	then
	1252	if [[ $host = ibms ]]
	1253	then
	1254	node_usage=shared
[181]	1255	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1256	then
	1257	node_usage=singlejob
[1]	1258	else
	1259	node_usage=not_shared
	1260	fi
	1261	fi
[181]	1262
[635]	1263	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
[1]	1264	then
	1265	printf "\n"
	1266	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1267	printf "\n \"shared\" or \"not_shared\""
	1268	locat=tasks_per_node; (( iec = 0 )); exit
	1269	fi
	1270
	1271	fi
	1272
	1273	# PRUEFEN, OB HOSTFILE EXISTIERT
	1274	if [[ -n $hostfile ]]
	1275	then
	1276	if [[ ! -f $hostfile ]]
	1277	then
	1278	printf "\n"
	1279	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1280	locat=hostfile; exit
	1281	fi
	1282	fi
	1283
	1284	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1285	if [[ $host = ibmy && $do_remote = false ]]
	1286	then
	1287	if [[ ! -f $HOME/.rhosts ]]
	1288	then
	1289	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1290	printf "\n\n *** file:"
	1291	printf "\n $HOME/.rhosts"
	1292	printf "\n was created\n"
	1293	fi
	1294	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1295	then
	1296	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1297	printf "\n\n *** file:"
	1298	printf "\n $HOME/.rhosts"
	1299	printf "\n was extended by the name of the current host\n"
	1300	fi
	1301	fi
	1302
	1303
[759]	1304	# Set default value for the maximum number of parallel io streams
	1305	if [[ "$maximum_parallel_io_streams" = "" ]]
	1306	then
	1307	maximum_parallel_io_streams=$numprocs
	1308	fi
[1]	1309
[759]	1310
[1]	1311	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1312	if [[ $queue = none ]]
	1313	then
	1314	case $host in
[312]	1315	(ibmh) queue=no_class;;
[693]	1316	(ibmkisti) queue=class.32plus;;
[1]	1317	(ibmy) queue=parallel;;
[440]	1318	(lckyoto) queue=ph;;
[821]	1319	(lcsgib) queue=testq;;
	1320	(lcsgih) queue=testq;;
[635]	1321	(lctit) queue=S;;
[1]	1322	(nech) queue=none;;
[253]	1323	(necriam) queue=SP;;
[1]	1324	(unics) queue=unics;;
	1325	esac
	1326	fi
	1327
	1328
	1329	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1330	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1331	# ERMITTELN
	1332	(( i = 0 ))
	1333	while (( i < iin ))
	1334	do
	1335	(( i = i + 1 ))
	1336	(( maxcycle = 0 ))
	1337
	1338	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1339	if [[ "${actionin[$i]}" = di ]]
	1340	then
	1341	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1342	# REM-MASCHINE AUSWERTEN
	1343	eval filename=${pathin[$i]}/${endin[$i]}
	1344	else
	1345	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1346	# REM-MASCHINE AUSWERTEN
	1347	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1348	fi
[892]	1349	eval pathname=${pathin[$i]}
[1]	1350
[920]	1351	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
	1352	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
	1353	then
	1354	filename_input=$filename
	1355	fi
[892]	1356
[1]	1357	# PRUEFEN AUF VORHANDENSEIN
	1358	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
[746]	1359	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
[1]	1360	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1361	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1362	then
	1363	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1364	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1365	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1366	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1367	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1368	if [[ "${transin[$i]}" != "locopt" ]]
	1369	then
	1370	printf "\n\n +++ INPUT-file: "
	1371	if [[ "${extin[$i]}" = "" ]]
	1372	then
	1373	printf "\n $filename"
	1374	else
	1375	printf "\n $filename.${extin[$i]}"
	1376	fi
	1377	printf "\n does not exist\n"
	1378	locat=input; exit
	1379	else
	1380	transin[$i]="unavailable"
	1381	fi
	1382	else
	1383
	1384	# ZYKLUSNUMMER FESTSTELLEN
	1385	ls -1 -d $filename > filelist 2>/dev/null
	1386	ls -1 -d $filename.* >> filelist 2>/dev/null
	1387	while read zeile
	1388	do
	1389	cycle=$(print $zeile \| cut -f2 -d".")
	1390	if [[ "$cycle" = "$zeile" ]]
	1391	then
	1392	(( icycle = 0 ))
	1393	elif [[ "$cycle" = "${extin[$i]}" ]]
	1394	then
	1395	(( icycle = 0 ))
	1396	else
	1397	(( icycle = $cycle ))
	1398	fi
	1399	if (( icycle > maxcycle ))
	1400	then
	1401	(( maxcycle = icycle ))
	1402	file_to_be_used=$zeile
	1403	fi
	1404	done <filelist
	1405	rm filelist
	1406
	1407	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1408	if (( maxcycle > 0 ))
	1409	then
	1410	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1411	then
	1412	filename=${filename}.$maxcycle.${extin[$i]}
	1413	else
	1414	filename=${filename}.$maxcycle
	1415	fi
	1416	else
	1417	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1418	then
	1419	filename=${filename}.${extin[$i]}
	1420	fi
	1421	fi
	1422
	1423	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1424	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1425	absnamein[$i]=$filename
	1426	if (( maxcycle > 0 ))
	1427	then
	1428	if [[ "${actionin[$i]}" = di ]]
	1429	then
	1430	frelin[$i]=${endin[$i]}.$maxcycle
	1431	else
	1432	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1433	fi
	1434	else
	1435	if [[ "${actionin[$i]}" = di ]]
	1436	then
	1437	frelin[$i]=${endin[$i]}
	1438	else
	1439	frelin[$i]=${afname}${endin[$i]}
	1440	fi
	1441	fi
	1442
	1443	fi
	1444	done
[920]	1445
[1]	1446	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1447	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1448	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1449	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1450	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1451	(( i = 0 ))
	1452	while (( i < iout ))
	1453	do
	1454	(( i = i + 1 ))
	1455	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1456	then
[260]	1457	if [[ "${actionout[$i]}" = tr ]]
[1]	1458	then
	1459	actionout[$i]=""
[260]	1460	elif [[ "${actionout[$i]}" = trpe ]]
	1461	then
	1462	actionout[$i]=pe
[1]	1463	elif [[ "${actionout[$i]}" = tra ]]
	1464	then
	1465	actionout[$i]=a
	1466	fi
	1467	(( maxcycle = 0 ))
	1468	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1469	eval catalogname=${pathout[$i]}
	1470	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
[746]	1471	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
[1]	1472	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1473	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1474	then
	1475
	1476	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1477	if cat /dev/null > $filename
	1478	then
	1479	rm $filename
	1480	else
	1481
	1482	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1483	if [[ ! -d $catalogname ]]
	1484	then
	1485	if mkdir -p $catalogname
	1486	then
	1487	printf "\n\n *** directory:"
	1488	printf "\n $catalogname"
	1489	printf "\n was created\n"
	1490	else
	1491	printf "\n\n +++ OUTPUT-file:"
	1492	printf "\n $filename"
	1493	printf "\n cannot be created, because directory does not exist"
	1494	printf "\n and cannot be created either"
	1495	printf "\n"
	1496	locat=output ; exit
	1497	fi 2>/dev/null
	1498	else
	1499	printf "\n\n +++ OUTPUT-file:"
	1500	printf "\n $filename"
	1501	printf "\n cannot be created, although directory exists"
	1502	printf "\n"
	1503	locat=output ; exit
	1504	fi
	1505	fi 2>/dev/null
	1506	else
	1507
	1508	# ZYKLUSNUMMER FESTSTELLEN
	1509	ls -1 -d $filename > filelist 2>/dev/null
	1510	ls -1 -d $filename.* >> filelist 2>/dev/null
	1511	while read zeile
	1512	do
	1513	cycle=$(print $zeile \| cut -f2 -d".")
	1514	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1515	then
	1516	(( icycle = 1 ))
	1517	else
	1518	(( icycle = $cycle + 1 ))
	1519	fi
	1520	if (( icycle > maxcycle ))
	1521	then
	1522	(( maxcycle = icycle ))
	1523	fi
	1524	done <filelist
	1525	rm filelist
	1526	fi
	1527
	1528	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1529	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1530	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1531	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1532	if [[ "${actionout[$i]}" != a ]]
	1533	then
	1534	if (( maxcycle > 0 ))
	1535	then
	1536	filename=${filename}.$maxcycle
	1537	if cat /dev/null > $filename
	1538	then
	1539	rm $filename
	1540	else
	1541	printf "\n +++ OUTPUT-file:"
	1542	printf "\n $filename"
	1543	printf "\n cannot be created"
	1544	locat=output ; exit
	1545	fi
	1546	fi
	1547	else
	1548	(( maxcycle = maxcycle - 1 ))
	1549	if (( maxcycle > 0 ))
	1550	then
	1551	filename=${filename}.$maxcycle
	1552	fi
	1553	fi
	1554
	1555	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1556	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1557	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1558	pathout[$i]=$filename
	1559	if (( maxcycle > 0 ))
	1560	then
	1561	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1562	else
	1563	frelout[$i]=${fname}${endout[$i]}
	1564	fi
	1565
	1566	fi
	1567	done
	1568
	1569
[260]	1570	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1571	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1572	then
[260]	1573	if [[ "$dvr_inc" = "" ]]
[83]	1574	then
[260]	1575	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1576	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1577	locat=dvr; exit
[83]	1578	fi
[260]	1579	if [[ "$dvr_lib" = "" ]]
[83]	1580	then
[260]	1581	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1582	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1583	locat=dvr; exit
[83]	1584	fi
	1585	fi
	1586
	1587
[1]	1588	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1589	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1590	# UEBERSETZT ZU WERDEN)
	1591	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1592	then
	1593	printf "\n +++ neither main program nor executable defined"
	1594	locat=source; exit
	1595	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1596	then
	1597	printf "\n +++ main program as well as executable defined"
	1598	locat=source; exit
	1599	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1600	then
	1601	do_compile=false
	1602	fi
	1603
	1604
[191]	1605	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1606	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1607	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1608	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1609	then
	1610	rm -rf SOURCES_FOR_RUN_$fname
	1611	mkdir SOURCES_FOR_RUN_$fname
	1612	fi
	1613
	1614
[1]	1615	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1616	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1617	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1618	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1619	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1620	then
	1621
[5]	1622	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
[1]	1623
[838]	1624	if [[ "$source_list" = LOCALLY_MODIFIED ]]
[1]	1625	then
	1626
[5]	1627	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1628	source_list=""
	1629	cd $source_path
	1630
	1631
	1632	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1633	if [[ ! -d .svn ]]
	1634	then
	1635	printf "\n\n +++ source directory"
	1636	printf "\n \"$source_path\" "
	1637	printf "\n is not under control of \"subversion\"."
[306]	1638	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1639	fi
	1640
	1641
	1642	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1643	Filenames=""
[69]	1644	svn status > tmp_mrun
	1645	while read line
[5]	1646	do
	1647	firstc=`echo $line \| cut -c1`
	1648	if [[ $firstc = M \|\| $firstc = "?" ]]
	1649	then
	1650	Name=`echo "$line" \| cut -c8-`
	1651	extension=`echo $Name \| cut -d. -f2`
	1652	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1653	then
	1654	Filenames="$Filenames "$Name
	1655	fi
	1656	fi
[69]	1657	done < tmp_mrun
[5]	1658
	1659
	1660	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1661	for dateiname in $Filenames
	1662	do
	1663	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1664	source_list=$source_list"$dateiname "
	1665	done
	1666
	1667	cd - > /dev/null
	1668
	1669
[1]	1670	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1671	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1672	# VORHANDEN
[5]	1673	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1674	then
	1675
	1676	cd $source_path
	1677
	1678	for filename in $source_list
	1679	do
	1680
	1681	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1682	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1683	then
	1684	printf "\n +++ source code file: $filename"
	1685	printf "\n must not contain (\"/\") "
	1686	locat=source; exit
	1687	fi
	1688
	1689	if [[ ! -f $filename ]]
	1690	then
	1691	printf "\n +++ source code file: $filename"
	1692	printf "\n does not exist"
	1693	locat=source; exit
	1694	else
	1695	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1696	fi
	1697
	1698	done
	1699
	1700	cd - > /dev/null
	1701
	1702	fi
	1703
	1704
	1705	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1706	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1707	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1708	if [[ $restart_run != true ]]
[1]	1709	then
	1710
	1711	if [[ ! -f "$source_path/$mainprog" ]]
	1712	then
	1713	printf "\n\n +++ main program: $mainprog"
	1714	printf "\n does not exist in source directory"
	1715	printf "\n \"$source_path\"\n"
	1716	locat=source; exit
	1717	else
	1718	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1719	then
	1720	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1721	source_list=${mainprog}" $source_list"
	1722	fi
	1723	fi
	1724	fi
	1725
	1726
[211]	1727	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1728	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1729	if [[ "$restart_run" != true ]]
	1730	then
	1731	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1732	if [[ ! -f $makefile ]]
	1733	then
	1734	printf "\n +++ file \"$makefile\" does not exist"
	1735	locat=make; exit
	1736	else
	1737	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1738	fi
	1739	fi
	1740
	1741
[1]	1742	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1743	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1744	then
	1745
	1746	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1747	if [[ ! -d $add_source_path ]]
	1748	then
	1749	printf "\n\n +++ WARNING: additional source code directory"
	1750	printf "\n \"$add_source_path\" "
	1751	printf "\n does not exist or is not a directory."
	1752	printf "\n No source code will be used from this directory!\n"
	1753	add_source_path=""
[931]	1754	if [[ $silent == false ]]
	1755	then
	1756	sleep 3
	1757	fi
[1]	1758	else
	1759
	1760	cd $add_source_path
[211]	1761	found=false
[1]	1762
	1763	Names=$(ls -1 *.f90 2>&1)
	1764	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1765	Names=$(ls -1 *.F90 2>&1)
	1766	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1767	Names=$(ls -1 *.F 2>&1)
	1768	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1769	Names=$(ls -1 *.f 2>&1)
	1770	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1771	Names=$(ls -1 *.c 2>&1)
	1772	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1773
	1774	cd - > /dev/null
	1775	cd SOURCES_FOR_RUN_$fname
	1776
[211]	1777	# COPY MAKEFILE IF EXISTING
	1778	if [[ -f $add_source_path/Makefile ]]
	1779	then
	1780	printf "\n\n *** user Makefile from directory"
	1781	printf "\n \"$add_source_path\" is used \n"
[931]	1782	if [[ $silent == false ]]
	1783	then
	1784	sleep 1
	1785	fi
[211]	1786	cp $add_source_path/Makefile .
	1787	fi
	1788
[1]	1789	for dateiname in $AddFilenames
	1790	do
	1791	if [[ -f $dateiname ]]
	1792	then
	1793	printf "\n +++ source code file \"$dateiname\" found in additional"
	1794	printf "\n source code directory \"$add_source_path\" "
[211]	1795	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1796	printf "\n from directory \"$source_path\"."
[1]	1797	locat=source; exit
	1798	fi
	1799
	1800	cp $add_source_path/$dateiname .
	1801	source_list="$source_list $dateiname"
	1802
[211]	1803	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1804	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1805	then
	1806	printf "\n\n +++ user file \"$dateiname\" "
	1807	printf "\n is not listed in Makefile \n"
	1808	locat=source; exit
	1809	else
	1810
[1]	1811	# Default User-Interface von der Liste entfernen, falls Datei
	1812	# ein User-Interface enthaelt
[211]	1813	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1814	# then
	1815	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1816	# then
	1817	# rm -rf user_interface.f90
	1818	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1819	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1820	# printf "\n since a user-interface is found in file"
	1821	# printf "\n \"$add_source_path/$dateiname\" \n"
	1822	# sleep 3
	1823	# else
	1824	if [[ $found = false ]]
[1]	1825	then
[211]	1826	found=true
	1827	printf "\n\n *** following user file(s) added to the"
	1828	printf " files to be translated:\n "
[1]	1829	fi
[211]	1830	printf "$dateiname "
[931]	1831	if [[ $silent == false ]]
	1832	then
	1833	sleep 0.5
	1834	fi
	1835
[1]	1836	fi
	1837	done
[211]	1838	[[ $found = true ]] && printf "\n"
[1]	1839	cd - > /dev/null
	1840	fi
	1841	fi
	1842
	1843
	1844	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1845	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1846	if [[ $restart_run != true && -n $package_list ]]
[1]	1847	then
	1848
	1849	cd $source_path
	1850
	1851	for package in $package_list
	1852	do
	1853
	1854	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1855
	1856	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1857	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1858	# LIEFERT
	1859	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1860
	1861
	1862	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1863	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1864	for source_list_name in $package_source_list
	1865	do
	1866	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1867	then
	1868
	1869	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1870	ending=`echo $source_list_name \| cut -f2 -d.`
	1871	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1872	then
	1873	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1874	source_list="$source_list $source_list_name"
	1875	fi
	1876	fi
	1877	done
	1878	done
	1879
	1880	cd - > /dev/null
	1881	fi
	1882
	1883
	1884	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1885	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1886	# if [[ "$restart_run" != true ]]
	1887	# then
	1888	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1889	# if [[ ! -f $makefile ]]
	1890	# then
	1891	# printf "\n +++ file \"$makefile\" does not exist"
	1892	# locat=make; exit
	1893	# else
	1894	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1895	# fi
	1896	# fi
[1]	1897
	1898	fi # do_compile=true
	1899
	1900
	1901	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1902	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1903	if [[ $do_compile = true ]]
	1904	then
	1905
	1906	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1907	# ZUSAMMENSETZEN
[83]	1908	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1909	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1910	then
[82]	1911	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1912	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1913	then
[82]	1914	cpp_options="$cpp_options -D__nec"
	1915	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1916	then
	1917	cpp_options="$cpp_options -D__lc"
[1]	1918	else
[82]	1919	cpp_options="$cpp_options -D__$localhost"
[1]	1920	fi
[83]	1921
	1922	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1923	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1924	then
[82]	1925	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1926	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1927	else
[82]	1928	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1929	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1930	fi
[83]	1931
	1932	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1933	if [[ -n $package_list ]]
	1934	then
	1935	for package in $package_list
	1936	do
	1937	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1938	then
	1939	if [[ $package != "dvrp_graphics+1PE" ]]
	1940	then
[82]	1941	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1942	else
[82]	1943	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1944	export use_seperate_pe_for_dvrp_output=true
	1945	fi
	1946	else
	1947	if [[ $package != "dvrp_graphics+1PE" ]]
	1948	then
[82]	1949	cpp_options="$cpp_options -D__$package"
[1]	1950	else
[82]	1951	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1952	export use_seperate_pe_for_dvrp_output=true
	1953	fi
	1954	fi
	1955	done
	1956	fi
[83]	1957
	1958	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1959	if [[ -n $cpp_opts ]]
	1960	then
	1961	for popts in $cpp_opts
	1962	do
[82]	1963	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1964	then
	1965	cpp_options="${cpp_options},-D__$popts=__$popts"
	1966	else
	1967	cpp_options="$cpp_options -D__$popts"
	1968	fi
[1]	1969	done
	1970	fi
	1971
	1972	else
	1973
	1974
	1975	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1976	if [[ $do_remote = false ]]
	1977	then
	1978	if [[ ! -f $executable ]]
	1979	then
	1980	printf "\n +++ executable file: $executable"
	1981	printf "\n does not exist"
	1982	locat=executable; exit
	1983	fi
	1984	fi
	1985	fi
	1986
	1987
	1988	# JOBMODUS FESTSTELLEN
[635]	1989	if [[ "$ENVIRONMENT" = BATCH ]]
[1]	1990	then
	1991	jobmo=BATCH
	1992	else
	1993	jobmo=INTERACTIVE
	1994	fi
	1995
	1996
[635]	1997	# no interactive runs on lctit
	1998	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
	1999	then
	2000	printf "\n +++ no interactive runs allowed on host \"$host\" "
	2001	printf "\n please submit batch job using mrun option \"-b\" \n"
	2002	locat=normal; exit
	2003	fi
	2004
	2005
[1]	2006	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	2007	# DURCH BENUTZER ANDERWEITIG VEREINBART
	2008	if [[ "$compiler_name" = "" ]]
	2009	then
[82]	2010
[220]	2011	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	2012	locat=compiler_name; exit
	2013
[1]	2014	fi
	2015
	2016
[251]	2017	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	2018	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	2019
	2020
	2021
	2022	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	2023	kennung=$RANDOM
	2024	if [[ "$tmp_user_catalog" = "" ]]
	2025	then
[312]	2026	if [[ $localhost = ibmh ]]
[1]	2027	then
[312]	2028	tmp_user_catalog=$SCRATCH
[1]	2029	elif [[ $localhost = nech ]]
	2030	then
	2031	tmp_user_catalog=$WRKSHR
	2032	else
	2033	tmp_user_catalog=/tmp
	2034	fi
	2035	fi
	2036	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	2037
	2038
	2039	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	2040	# BESTIMMEN
	2041	if [[ "$tmp_data_catalog" = "" ]]
	2042	then
[622]	2043	if [[ $localhost = nech ]]
[1]	2044	then
	2045	tmp_data_catalog=$WRKSHR/mrun_restart_data
	2046	else
	2047	tmp_data_catalog=/tmp/mrun_restart_data
	2048	fi
	2049	fi
	2050
	2051
	2052	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	2053	# ERSETZEN
	2054	if [[ $do_remote = false && $do_compile = true ]]
	2055	then
	2056	eval fopts=\"$fopts\"
	2057	eval lopts=\"$lopts\"
	2058	fi
	2059
	2060
	2061
	2062	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	2063	fopts="$fopts $netcdf_inc $dvr_inc"
	2064	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	2065	ROPTS="$ropts"
[892]	2066	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
[1]	2067	then
	2068	XOPT="-X $numprocs"
	2069	fi
	2070
	2071
	2072
	2073	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	2074	# GRAMM BENOETIGT
	2075	done=false
	2076	while [[ $done = false ]]
	2077	do
	2078	cputime=$cpumax
	2079	if (( $cputime == 0 ))
	2080	then
[246]	2081	if [[ $do_batch = true ]]
	2082	then
	2083	printf "\n +++ cpu-time is undefined"
	2084	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	2085	printf "\n >>> "
	2086	read cputime 1>/dev/null 2>&1
	2087	else
	2088	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	2089	fi
[1]	2090	else
	2091	done=true
	2092	fi
	2093	cpumax=$cputime
	2094	done
	2095
	2096	(( minuten = cputime / 60 ))
	2097	(( sekunden = cputime - minuten * 60 ))
	2098
	2099
	2100	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	2101	if [[ $do_batch = true ]]
	2102	then
	2103	done=false
	2104	while [[ $done = false ]]
	2105	do
	2106	if (( memory == 0 ))
	2107	then
	2108	printf "\n +++ memory demand is undefined"
	2109	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	2110	printf "\n >>> "
	2111	read memory 1>/dev/null 2>&1
	2112	else
	2113	done=true
	2114	fi
	2115	done
	2116	fi
	2117
	2118
	2119	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	2120	if [[ $do_remote = true && -z $remote_username ]]
	2121	then
	2122	while [[ -z $remote_username ]]
	2123	do
	2124	printf "\n +++ username on remote host \"$host\" is undefined"
	2125	printf "\n >>> Please type username:"
	2126	printf "\n >>> "
	2127	read remote_username
	2128	done
	2129	mc="$mc -u$remote_username"
	2130	fi
	2131
[892]	2132	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
	2133	if [[ "$login_init_cmd" != "" ]]
	2134	then
	2135	export init_cmds="${login_init_cmd};"
	2136	fi
[221]	2137
[892]	2138
[493]	2139	# set module load command and export for subjob
	2140	if [[ "$modules" != "" ]]
	2141	then
[678]	2142	if [[ $host = lctit ]]
	2143	then
	2144	export module_calls=". $modules"
	2145	else
	2146	export module_calls="module load ${modules};"
	2147	fi
[493]	2148	fi
	2149
[683]	2150	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
[562]	2151	if [[ $host = lcsgib \|\| $host = lcsgih ]]
[555]	2152	then
	2153	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
	2154	then
[562]	2155	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
[555]	2156	fi
[721]	2157	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
	2158	# then
	2159	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
	2160	# echo "*** module_calls = $module_calls"
	2161	# fi
[555]	2162	fi
[493]	2163
[555]	2164
[221]	2165	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2166	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2167	then
[493]	2168	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
	2169	then
	2170	mpilib=mpt
	2171	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
	2172	then
	2173	mpilib=mvapich
[738]	2174	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
	2175	then
	2176	mpilib=impi
[493]	2177	fi
[221]	2178	fi
	2179
	2180
	2181
[1]	2182	###########################################################################
	2183	# HEADER-AUSGABE
	2184	###########################################################################
	2185
	2186
	2187	calltime=$(date)
	2188	printf "\n"
	2189	# [[ $silent = false ]] && clear
	2190	printf "#--------------------------------------------------------------# \n"
	2191	printf "\| $version$calltime \| \n"
	2192	printf "\| \| \n"
	2193	spalte1="called on:"; spalte2=$localhost_realname
	2194	printf "\| $spalte1$spalte2 \| \n"
	2195	if [[ $local_compile = false ]]
	2196	then
	2197	if [[ $do_remote = true ]]
	2198	then
	2199	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2200	else
	2201	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2202	fi
	2203	else
	2204	spalte1="compiling test only!"; spalte2=""
	2205	fi
	2206	printf "\| $spalte1$spalte2 \| \n"
	2207	if [[ -n $numprocs ]]
	2208	then
	2209	spalte1="number of PEs:"; spalte2=$numprocs
	2210	printf "\| $spalte1$spalte2 \| \n"
	2211	fi
	2212	if [[ -n $tasks_per_node ]]
	2213	then
	2214	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	2215	printf "\| $spalte1$spalte2 \| \n"
	2216	fi
[759]	2217	if [[ $maximum_parallel_io_streams != $numprocs ]]
	2218	then
	2219	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
	2220	printf "\| $spalte1$spalte2 \| \n"
	2221	fi
[622]	2222	if [[ $use_openmp = true ]]
[1]	2223	then
	2224	spalte1="threads per task:"; spalte2="$threads_per_task"
	2225	printf "\| $spalte1$spalte2 \| \n"
	2226	fi
	2227	printf "\| \| \n"
	2228	if [[ $do_compile = true ]]
	2229	then
[475]	2230	if [[ "$mopts" != "" ]]
	2231	then
[493]	2232	spalte1="make options:"; spalte2=$mopts
[475]	2233	printf "\| $spalte1$spalte2 \| \n"
	2234	zeile=$(echo "$mopts" \| cut -c41-)
	2235	while [[ "$zeile" != "" ]]
	2236	do
	2237	spalte1=""
	2238	spalte2=$zeile
	2239	printf "\| $spalte1$spalte2 \| \n"
	2240	zeile=$(echo "$zeile" \| cut -c41-)
	2241	done
	2242	fi
	2243
[493]	2244	spalte1="cpp directives:"; spalte2=$cpp_options
[1]	2245	printf "\| $spalte1$spalte2 \| \n"
[82]	2246	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2247	while [[ "$zeile" != "" ]]
	2248	do
	2249	spalte1=""
	2250	spalte2=$zeile
	2251	printf "\| $spalte1$spalte2 \| \n"
	2252	zeile=$(echo "$zeile" \| cut -c41-)
	2253	done
	2254
[493]	2255	spalte1="compiler options:"; spalte2="$fopts"
[1]	2256	printf "\| $spalte1$spalte2 \| \n"
[82]	2257	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2258	while [[ "$zeile" != "" ]]
	2259	do
	2260	spalte1=""
	2261	spalte2=$zeile
	2262	printf "\| $spalte1$spalte2 \| \n"
	2263	zeile=$(echo "$zeile" \| cut -c41-)
	2264	done
	2265
[493]	2266	spalte1="linker options:"; spalte2=$lopts
[1]	2267	printf "\| $spalte1$spalte2 \| \n"
[82]	2268	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2269	while [[ "$zeile" != "" ]]
	2270	do
	2271	spalte1=""
	2272	spalte2=$zeile
	2273	printf "\| $spalte1$spalte2 \| \n"
	2274	zeile=$(echo "$zeile" \| cut -c41-)
	2275	done
	2276
[493]	2277	spalte1="modules to be load:"; spalte2=$modules
	2278	printf "\| $spalte1$spalte2 \| \n"
	2279	zeile=$(echo "$modules" \| cut -c41-)
	2280	while [[ "$zeile" != "" ]]
	2281	do
	2282	spalte1=""
	2283	spalte2=$zeile
	2284	printf "\| $spalte1$spalte2 \| \n"
	2285	zeile=$(echo "$zeile" \| cut -c41-)
	2286	done
	2287
[1]	2288	spalte1="main program":; spalte2=$mainprog
	2289	printf "\| $spalte1$spalte2 \| \n"
	2290	else
	2291	spalte1=executable:; spalte2=$executable
	2292	printf "\| $spalte1$spalte2 \| \n"
	2293	fi
	2294	printf "\| \| \n"
	2295	spalte1="base name of files":; spalte2=$fname
	2296	printf "\| $spalte1$spalte2 \| \n"
	2297	if [[ $fname != $afname ]]
	2298	then
	2299	spalte1="base name of input files":; spalte2=$afname
	2300	printf "\| $spalte1$spalte2 \| \n"
	2301	fi
	2302	spalte1="INPUT control list":; spalte2=$input_list
	2303	printf "\| $spalte1$spalte2 \| \n"
	2304	spalte1="OUTPUT control list":; spalte2=$output_list
	2305	printf "\| $spalte1$spalte2 \| \n"
	2306
	2307	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2308	then
	2309	spalte1="memory demand / PE":; spalte2="$memory MB"
	2310	printf "\| $spalte1$spalte2 \| \n"
	2311	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2312	printf "\| $spalte1$spalte2 \| \n"
	2313	fi
	2314
	2315	if [[ $do_compile = true ]]
	2316	then
	2317	printf "\| \| \n"
	2318	printf "\| Files to be compiled: \| \n"
	2319	zeile=$source_list
	2320	while [[ "$zeile" != "" ]]
	2321	do
	2322	spalte3=$zeile
	2323	printf "\| $spalte3 \| \n"
	2324	zeile=$(echo "$zeile" \| cut -c61-)
	2325	done
	2326	fi
	2327	printf "#--------------------------------------------------------------#"
	2328
	2329
	2330
	2331	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2332	if [[ $do_trace = true ]]
	2333	then
	2334	(( i = 0 ))
	2335	while (( i < iin ))
	2336	do
	2337	(( i = i + 1 ))
	2338	if (( i == 1 ))
	2339	then
	2340	printf "\n\n >>> INPUT-file assignments:\n"
	2341	fi
	2342	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2343	done
	2344	(( i = 0 ))
	2345	while (( i < iout ))
	2346	do
	2347	(( i = i + 1 ))
	2348	if (( i == 1 ))
	2349	then
	2350	printf "\n\n >>> OUTPUT-file assignments:\n"
	2351	fi
	2352	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2353	done
	2354	(( i = 0 ))
	2355	while (( i < iic ))
	2356	do
	2357	(( i = i + 1 ))
	2358	if (( i == 1 ))
	2359	then
	2360	printf "\n\n >>> INPUT-commands:\n"
	2361	fi
	2362	printf "\n ${in_command[$i]}"
	2363	done
	2364	(( i = 0 ))
	2365	while (( i < ioc ))
	2366	do
	2367	(( i = i + 1 ))
	2368	if (( i == 1 ))
	2369	then
	2370	printf "\n\n >>> OUTPUT-commands:\n"
	2371	fi
	2372	printf "\n ${out_command[$i]}"
	2373	done
	2374	fi
	2375
	2376
	2377	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2378	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2379	then
	2380	antwort=dummy
	2381	printf "\n\n"
	2382	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2383	do
	2384	printf " >>> everything o.k. (y/n) ? "
	2385	read antwort
	2386	done
	2387	if [[ $antwort = n \|\| $antwort = N ]]
	2388	then
	2389	locat=user_abort; (( iec = 0 )); exit
	2390	fi
	2391	if [[ $do_batch = true ]]
	2392	then
	2393	printf " >>> batch-job will be created and submitted"
	2394	else
	2395	if [[ $local_compile = false ]]
	2396	then
	2397	printf " >>> MRUN will now continue to execute on this machine"
	2398	else
	2399	printf " >>> a test compilation will now be carried out on this machine"
	2400	fi
	2401	fi
	2402	fi
	2403
[807]	2404	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
[841]	2405
	2406	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
	2407	check_depository="${working_directory}/trunk/UTIL"
	2408	check_sources="${working_directory}/tmp_check_namelist_files"
[818]	2409	skip_check=false
[841]	2410
	2411	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
[920]	2412	if [[ ! -f $check_depository/check_namelist_files.tar ]]
[841]	2413	then
[892]	2414	skip_check=true
[920]	2415	reason="run on remote host or parameter file check has not been compiled."
	2416	fi
	2417	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
	2418	then
	2419	skip_check=true
[892]	2420	reason="parameter file check has not been compiled."
	2421	fi
[841]	2422
[892]	2423	#CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
	2424	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
	2425	then
	2426	skip_check=true
	2427	reason="serial run."
[841]	2428	fi
	2429
	2430	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
[892]	2431	if [[ $check_namelist_files == false ]]
[807]	2432	then
[892]	2433	skip_check=true
	2434	reason="-z option set."
[815]	2435	fi
[892]	2436
	2437	if [[ $fromhost != $localhost ]]
[815]	2438	then
[892]	2439	skip_check=true
	2440	reason="submitting host is local host."
	2441	fi
[1]	2442
[892]	2443	if [[ $run_coupled_model == true ]]
	2444	then
	2445	skip_check=true
	2446	reason="coupled run."
	2447	fi
[1]	2448
[892]	2449	if [[ $restart_run == true ]]
	2450	then
	2451	skip_check=true
	2452	reason="restart run."
[807]	2453
[892]	2454	fi
[807]	2455
[892]	2456	#SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
[920]	2457	((last_char = `echo $filename_input \| wc -c` - 1))
	2458	last_char=`echo $filename_input \|cut -c$last_char`
[892]	2459	if [[ "$last_char" == "f" ]]
	2460	then
	2461	skip_check=true
	2462	reason="restart run.)"
	2463	fi
[807]	2464
[892]	2465	if [[ $skip_check == false ]]
	2466	then
[807]	2467
[892]	2468	tmp_check=${working_directory}/tmp_check
[841]	2469
[818]	2470	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
	2471	# NOT NECESSARILY REQUIRED
	2472	line=""
	2473	found=false
[892]	2474	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
[818]	2475	while read line1
	2476	do
	2477	line="$line1"
	2478	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2479	then
	2480	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
	2481	found=true
	2482	fi
	2483	done < $tmp_check
[807]	2484
[818]	2485	if [[ $found = false ]]
	2486	then
	2487	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
	2488	fi
	2489
[807]	2490	rm -rf ${working_directory}/tmp_check
	2491
	2492	# CHECK IF THE A P3DF FILE MUST BE CHECKED
	2493	for item in $input_list
	2494	do
[892]	2495	if [[ "$item" == "restart" ]]
[807]	2496	then
	2497	check_restart=1
	2498	else
	2499	check_restart=0
	2500	fi
	2501	done
	2502
	2503	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
[920]	2504	if [[ (! -f $filename_input) && ( "$filename_input" != "") ]]
[807]	2505	then
[920]	2506	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
[807]	2507	locat=check_namelist; exit
	2508	fi
	2509
	2510	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
	2511	if [[ $check_restart == 1 ]]
	2512	then
[892]	2513
	2514
	2515
[920]	2516	filenamef="${filename_input}f"
[892]	2517	if [[ ! -f $filenamef ]]
[807]	2518	then
[892]	2519	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
[807]	2520	check_restart=0
	2521	answer=dummy
	2522	printf "\n\n"
	2523
[818]	2524	if [[ $silent == false ]]
[807]	2525	then
[818]	2526	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2527	do
	2528	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2529	read answer
	2530	done
	2531	if [[ $answer = a \|\| $answer = A ]]
	2532	then
	2533	printf "\n +++ Aborting...."
	2534	locat=normal; exit
	2535	fi
[807]	2536	fi
	2537	else
	2538	check_restart=1
	2539	fi
	2540	fi
	2541
	2542	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
	2543	mkdir $check_sources
	2544	cd $check_sources
	2545
[892]	2546
[807]	2547	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
[892]	2548	if [[ -d $add_source_path ]]
[807]	2549	then
	2550	printf "\n\n *** copying files from $check_depository"
	2551	cp $check_depository/check_namelist_files.tar ./
	2552
	2553	printf "\n\n *** untar of makefile and source files in $check_sources"
	2554	tar -xf check_namelist_files.tar > /dev/null 2>&1
	2555
	2556	printf "\n\n *** adding user code."
[892]	2557	cp $add_source_path/* ./
[807]	2558	touch check_namelist_files.f90
	2559
	2560	# GET COMPILER OPTIONS AND PERFORM MAKE
	2561	printf "\n\n *** compiling code if necessary...\n"
	2562	copts_check="-cpp -D_parallel -D__check"
	2563	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
	2564
	2565	# GET MAKE OUTPUT
	2566	if [[ $? != 0 ]]
	2567	then
[815]	2568	printf "\n +++ error during make."
	2569	answer=dummy
	2570	printf "\n\n"
[818]	2571	if [[ $silent == false ]]
[815]	2572	then
[818]	2573	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2574	do
	2575	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2576	read answer
	2577	done
	2578	if [[ $answer = a \|\| $answer = A ]]
	2579	then
	2580	printf "\n +++ Aborting..."
	2581	rm -rf $check_sources
	2582	locat=normal; exit
	2583	else
	2584	skip_check=true
	2585	fi
[815]	2586	else
	2587	skip_check=true
	2588	fi
[807]	2589	fi
	2590	else
	2591	cp $PALM_BIN/check_namelist_files.x ./
	2592	fi
	2593
[920]	2594	cp $filename_input ./PARIN
[807]	2595	if [[ $check_restart == 1 ]]
	2596	then
[892]	2597	cp $filenamef ./PARINF
[807]	2598	fi
	2599
[892]	2600	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
[818]	2601	then
	2602	printf "\n *** adding topography data"
[892]	2603	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
[818]	2604
	2605	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
	2606	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
	2607	# WHICH REQUIRE SUFFICIENT MEMORY
	2608	ulimit -s unlimited
	2609	fi
	2610
[807]	2611	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
	2612	cat > ENVPAR << %%END%%
[823]	2613	&envpar run_identifier = '$fname', host = '$host',
[807]	2614	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2615	maximum_parallel_io_streams = $maximum_parallel_io_streams,
	2616	maximum_cpu_time_allowed = ${cpumax}.,
	2617	revision = '$global_revision',
	2618	local_dvrserver_running = $local_dvrserver_running /
	2619
	2620	%%END%%
	2621
	2622	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
[818]	2623	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
[807]	2624	printf "\n +++ WARNING: check_namelist_files.x not found."
	2625	answer=dummy
	2626	printf "\n\n"
[818]	2627
	2628	if [[ $silent == false ]]
[807]	2629	then
[818]	2630	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2631	do
	2632	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2633	read answer
	2634	done
	2635	if [[ $answer = a \|\| $answer = A ]]
	2636	then
	2637	printf "\n +++ Aborting..."
	2638	rm -rf $check_sources
	2639	locat=normal; exit
	2640	else
	2641	printf "\n *** Skipping parameter file check."
	2642
	2643	fi
	2644	fi
	2645
[815]	2646	elif [[ $skip_check == false ]]
	2647	then
[807]	2648	# STARTING THE PARAMETER FILE CHECK
	2649	printf "\n\n *** starting parameter file check..."
	2650
	2651	# CHECKING THE P3D FILE
[920]	2652	printf "\n\n (1) checking $filename_input"
[931]	2653	echo "$numprocs 0 0" > VARIN
[807]	2654	errors=`./check_namelist_files.x < VARIN 2>&1`
	2655
	2656	check_error=false
	2657	if [[ "$errors" == "" ]]
	2658	then
	2659	printf " --> o.k."
	2660	else
	2661	printf " --> failed."
	2662	check_error=true
	2663	printf "\n\n $errors"
	2664	fi
	2665
	2666	# CHECKING THE PD3F FILE IF NECESSARY
	2667	if [[ $check_restart == 1 && $check_error == false ]]
	2668	then
[892]	2669	printf "\n\n (2) checking $filenamef"
[807]	2670
	2671	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
	2672	found=false
	2673	cat PARINF\|while read line
	2674	do
	2675	line=$(echo $line\|sed 's/ //g')
	2676	if [[ $line == "&inipar" ]]
	2677	then
	2678	start_search=true
	2679	fi
	2680
	2681	if [[ $start_search == true ]]
	2682	then
	2683	if [[ $line == "initializing_actions='read_restart_data'" ]]
	2684	then
	2685	found=true
	2686	break
	2687	fi
	2688	fi
	2689
	2690	if [[ $line == "/" ]]
	2691	then
	2692	start_search=false
	2693	fi
	2694
	2695	done
	2696
	2697	if [[ $found = false ]]
	2698	then
	2699	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
	2700	printf "\n in &inipar list in $fname$p3df_suffix."
	2701	rm -rf $check_sources
	2702	locat=check_namelist; exit
	2703	fi
	2704
[931]	2705	# READ max_user_pr FROM FILES
	2706	if [[ -f parin_for_check ]]
	2707	then
	2708	read max_pr_user < parin_for_check
	2709	else
	2710	max_user_pr=0
	2711	fi
	2712
	2713	echo "$numprocs 1 $max_pr_user" > VARIN
[807]	2714	errors=`./check_namelist_files.x < VARIN 2>&1`
	2715
	2716	if [[ "$errors" == "" ]]
	2717	then
	2718	printf " --> o.k."
	2719	else
	2720	printf " --> failed."
	2721	check_error=true
	2722	printf "\n\n $errors"
	2723	fi
	2724	fi
	2725
	2726	# REPORT ERRORS AND CONTINUE/EXIT
	2727	if [[ $check_error == true ]]
	2728	then
	2729	printf "\n +++ errors found in the parameter file!\n"
	2730	answer=dummy
	2731	printf "\n\n"
	2732
	2733	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2734	do
	2735	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2736	read answer
	2737	done
	2738
	2739	if [[ $answer = a \|\| $answer = A ]]
	2740	then
	2741	printf "\n +++ Aborting..."
	2742	rm -rf $check_sources
	2743	locat=normal; exit
	2744	fi
	2745	else
	2746	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
	2747	fi
	2748	rm -rf $check_sources
	2749	fi
	2750	else
[892]	2751	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
[807]	2752	fi
	2753
[818]	2754	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
	2755	rm -rf $check_sources
[807]	2756	cd $working_directory
	2757
[892]	2758
[807]	2759	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2760	# CHENDE AKTIONEN DURCHGEFUEHRT
[1]	2761	if [[ $do_batch = false ]]
	2762	then
	2763
	2764
	2765	# TEMPORAEREN KATALOG ERZEUGEN
	2766	mkdir -p $TEMPDIR
	2767	chmod go+rx $TEMPDIR
	2768	tmpcreate=true
	2769
[493]	2770	# set striping on lustre file system
	2771	# if [[ $localhost = lcsgih ]]
	2772	# then
	2773	# lfs setstripe -s 8192k -c 16 $TEMPDIR
	2774	# lfs getstripe $TEMPDIR
	2775	# fi
[1]	2776
[493]	2777
[1]	2778	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2779	# TEMPORAERES VERZEICHNIS KOPIEREN
	2780	if [[ $do_compile = true ]]
	2781	then
	2782
	2783	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2784	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2785	if [[ $localhost = nech ]]
	2786	then
	2787	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2788	if mkdir -p $TEMPDIR_COMPILE
	2789	then
	2790	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2791	printf "\n is generated as temporary directory for cross compiling\n"
	2792	else
	2793	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2794	printf "\n needed for cross compilation failed"
	2795	locat=compile
	2796	exit
	2797	fi
	2798	else
	2799	TEMPDIR_COMPILE=$TEMPDIR
	2800	fi
	2801
	2802
[82]	2803	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2804	line=""
	2805	grep "%depository_path" $config_file > tmp_mrun
	2806	while read line
	2807	do
	2808	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2809	then
	2810	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2811	then
[82]	2812	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2813	fi
[82]	2814	fi
	2815	done < tmp_mrun
[1]	2816
[82]	2817	line=""
	2818	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2819	while read line
	2820	do
	2821	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2822	then
[211]	2823	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2824	then
	2825	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2826	fi
[1]	2827	fi
[82]	2828	done < tmp_mrun
[1]	2829
[82]	2830	if [[ "$local_depository_path" = "" ]]
	2831	then
	2832	if [[ "$global_depository_path" != "" ]]
[1]	2833	then
[82]	2834	local_depository_path=$global_depository_path
[1]	2835	else
[82]	2836	printf "\n\n +++ no depository path found in configuration file"
	2837	printf "\n for local host \"$localhost\" "
	2838	printf "\n please set \"\%depository_path\" in configuration file\n"
	2839	locat=config_file; exit
[1]	2840	fi
[82]	2841	fi
	2842	eval local_depository_path=$local_depository_path
[215]	2843	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2844	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2845
[215]	2846
[82]	2847	basename=`print $mainprog \| cut -f1 -d"."`
	2848	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2849	if [[ ! -f $make_depository ]]
	2850	then
	2851	printf "\n"
	2852	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2853	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2854	else
	2855	cp $make_depository $TEMPDIR_COMPILE
[1]	2856	cd $TEMPDIR_COMPILE
[82]	2857	tar -xf $make_depository > /dev/null 2>&1
[1]	2858	cd - > /dev/null
	2859	fi
[82]	2860
	2861	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2862
[1]	2863	else
[475]	2864
[1]	2865	cp $executable ${TEMPDIR}/a.out
[475]	2866
[1]	2867	fi
	2868
	2869
	2870	# WECHSEL IN TEMPORAEREN KATALOG
[475]	2871	cd $TEMPDIR
[1]	2872	printf "\n *** changed to temporary directory: $TEMPDIR"
	2873
	2874
	2875	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2876	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2877	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2878	# ERMITTELN
	2879	(( i = 0 ))
	2880	while (( i < iout ))
	2881	do
	2882	(( i = i + 1 ))
	2883	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2884	then
	2885	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2886	else
	2887	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2888	fi
	2889	done
	2890
	2891
	2892	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2893	if [[ $do_compile = true ]]
	2894	then
	2895
	2896
	2897	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2898	printf "\n\n\n *** compilation starts \n$striche\n"
	2899	printf " *** compilation with make using following options:\n"
[211]	2900	printf " make depository: $make_depository"
[475]	2901	if [[ "$mopts" != "" ]]
	2902	then
	2903	printf " make options: $mopts\n"
	2904	fi
[82]	2905	printf " compilername: $compiler_name\n"
[475]	2906	printf " compiler options: $fopts\n"
[493]	2907	printf " preprocessor directives: $cpp_options \n"
	2908	printf " linker options: $lopts \n"
	2909	if [[ "$modules" != "" ]]
	2910	then
	2911	printf " modules to be load: $modules \n"
	2912	fi
[82]	2913	printf " source code files: $source_list \n"
	2914
	2915	if [[ $localhost = nech ]]
[1]	2916	then
[892]	2917	# init_cmds was ". /SX/opt/etc/initsx.sh;"
	2918	ssh 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[82]	2919	cp $TEMPDIR_COMPILE/a.out .
	2920	[[ $? != 0 ]] && compile_error=true
	2921	rm -rf $TEMPDIR_COMPILE
[312]	2922	elif [[ $localhost = ibmh ]]
	2923	then
[325]	2924	printf " compiler is called via ssh on \"plogin1\" \n"
[892]	2925	ssh plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[312]	2926	[[ ! -f a.out ]] && compile_error=true
	2927	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[197]	2928	elif [[ $localhost = lcsgib ]]
	2929	then
[540]	2930	printf " compiler is called via ssh on \"bicegate0\" \n"
[892]	2931	ssh bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2932	[[ ! -f a.out ]] && compile_error=true
	2933	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2934	elif [[ $localhost = lcsgih ]]
	2935	then
[738]	2936	printf " compiler is called via ssh on \"hicegate0\" \n"
[892]	2937	ssh hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2938	[[ ! -f a.out ]] && compile_error=true
	2939	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[755]	2940	elif [[ $localhost = lcflow ]]
	2941	then
	2942	printf " compiler is called via ssh on \"flow\" \n"
[892]	2943	ssh flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[755]	2944	[[ ! -f a.out ]] && compile_error=true
	2945	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2946	else
[920]	2947	[[ "$init_cmds" != "" ]] && eval $init_cmds
[493]	2948	[[ "$module_calls" != "" ]] && eval $module_calls
[475]	2949	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
[807]	2950
[82]	2951	fi
[1]	2952
	2953	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2954	then
	2955	printf "\n +++ error occured while compiling or linking"
	2956	locat=compile
[181]	2957
[182]	2958	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2959	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2960	# then
[181]	2961	exit
[197]	2962	# else
	2963	# locat=normal
	2964	# fi
[1]	2965	else
	2966	printf "$striche\n *** compilation finished \n"
	2967	fi
	2968	fi
	2969
	2970
	2971	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2972	if [[ $local_compile = true ]]
	2973	then
	2974	cd $HOME
	2975	rm -rf $TEMPDIR
	2976	locat=local_compile; exit
	2977	fi
	2978
	2979
	2980	# BEREITSTELLEN DER INPUT-DATEIEN
	2981	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2982	(( i = 0 ))
	2983	while (( i < iin ))
	2984	do
	2985	(( i = i + 1 ))
	2986	if (( i == 1 ))
	2987	then
	2988	printf "\n\n *** providing INPUT-files:\n$striche"
	2989	fi
	2990
	2991
	2992	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2993	if [[ "${transin[$i]}" = unavailable ]]
	2994	then
	2995	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2996	then
	2997	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2998	printf "\n is not available!"
	2999	else
	3000	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	3001	printf "\n is not available!"
	3002	fi
	3003	continue
	3004	fi
	3005
	3006	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3007	files_for_pes=false; datentyp=file
	3008	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	3009	then
	3010	files_for_pes=true; datentyp=directory
	3011	actionin[$i]=""
	3012	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	3013	then
	3014	actionin[$i]=""
	3015	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	3016	then
	3017	files_for_pes=true; datentyp=directory
	3018	actionin[$i]="ar"
	3019	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	3020	then
	3021	actionin[$i]="ar"
	3022	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	3023	then
	3024	files_for_pes=true; datentyp=directory
	3025	actionin[$i]="fl"
	3026	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	3027	then
	3028	actionin[$i]="fl"
	3029	fi
	3030
	3031	if [[ $files_for_pes = true ]]
	3032	then
	3033	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	3034	else
	3035	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	3036	fi
	3037
	3038	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	3039	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	3040	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	3041	# SERVER ZU HOLEN
	3042	if [[ "${actionin[$i]}" = fl ]]
	3043	then
	3044	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	3045	if [[ $files_for_pes = false ]]
	3046	then
	3047	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	3048	then
	3049	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	3050	got_tmp[$i]=true
	3051	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	3052	then
	3053	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	3054	printf "\n *** trying to use backup copy in \"$WORK\" "
	3055	cp $WORK/${frelin[$i]} ${localin[$i]}
	3056	else
	3057	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	3058	printf "\n or \"$tmp_data_catalog\" does not exist!"
	3059	printf "\n *** trying to get copy from archive"
	3060	actionin[$i]=ar
	3061	fi
	3062	else
	3063	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	3064	then
	3065	mkdir ${localin[$i]}
[149]	3066	cd $tmp_data_catalog/${frelin[$i]}
	3067	for file in $(ls *)
	3068	do
	3069	ln $file $TEMPDIR/${localin[$i]}
	3070	done
	3071	cd $TEMPDIR
[1]	3072	got_tmp[$i]=true
	3073	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	3074	then
	3075	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	3076	printf "\n *** trying to use backup copy in \"$WORK\" "
	3077	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	3078	else
	3079	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	3080	printf "\n or \"$tmp_data_catalog\" does not exist!"
	3081	printf "\n *** trying to get copy from archive"
	3082	actionin[$i]=ar
	3083	fi
	3084	fi
	3085	fi
	3086
	3087
	3088	# DATEI LIEGT AUF ARCHIV-SERVER
	3089	if [[ "${actionin[$i]}" = ar ]]
	3090	then
	3091
	3092	if [[ $files_for_pes = false ]]
	3093	then
	3094	printf "\n file will be restored from archive-system ($archive_system)!"
	3095	else
	3096	printf "\n directory will be restored from archive-system ($archive_system)!"
	3097	fi
	3098
	3099	file_restored=false
	3100
	3101	if [[ $archive_system = asterix ]]
	3102	then
	3103	do_stagein=true
	3104	(( stagein_anz = 0 ))
	3105	while [[ $do_stagein = true ]]
	3106	do
	3107	if [[ $files_for_pes = false ]]
	3108	then
	3109	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	3110	else
	3111	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	3112	fi
	3113	cat STAGEIN_OUTPUT
	3114	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	3115	then
	3116	file_restored=true
	3117	do_stagein=false
	3118	else
	3119	(( stagein_anz = stagein_anz + 1 ))
	3120	if (( stagein_anz == 10 ))
	3121	then
	3122	printf "\n +++ stagein stoped after 10 tries"
	3123	locat=stage
	3124	exit
	3125	fi
	3126	printf "\n +++ restoring from archive failed, trying again:"
	3127	sleep 900
	3128	fi
	3129	done
	3130	elif [[ $archive_system = DMF ]]
	3131	then
	3132	if [[ $files_for_pes = false ]]
	3133	then
	3134	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	3135	locat=DMF
	3136	exit
	3137	else
	3138	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	3139	cp -r $ARCHIVE/${frelin[$i]} $PWD
	3140	file_restored=true
	3141	fi
	3142	elif [[ $archive_system = tivoli ]]
	3143	then
	3144	if [[ $files_for_pes = false ]]
	3145	then
[399]	3146	if [[ $localhost = lcsgih ]]
[1]	3147	then
[399]	3148	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	3149	else
[399]	3150	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	3151	fi
	3152	else
	3153	(( inode = 0 ))
	3154	while (( inode < nodes ))
	3155	do
[399]	3156	if [[ $localhost = lcsgih ]]
[1]	3157	then
[399]	3158	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	3159	else
[399]	3160	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	3161	fi
	3162	(( inode = inode + 1 ))
	3163	done
	3164	fi
	3165	file_restored=true
	3166	elif [[ $archive_system = ut ]]
	3167	then
	3168	if [[ $files_for_pes = false ]]
	3169	then
	3170	cp $UT/${frelin[$i]} .
	3171	else
	3172	(( inode = 0 ))
	3173	while (( inode < nodes ))
	3174	do
	3175	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	3176	(( inode = inode + 1 ))
	3177	done
	3178	fi
	3179	file_restored=true
	3180	else
	3181	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	3182	locat=rearchive
	3183	exit
	3184	fi
	3185
	3186	if [[ $file_restored = true ]]
	3187	then
	3188
	3189	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	3190	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	3191	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	3192	if [[ $files_for_pes = false ]]
	3193	then
	3194	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	3195	else
	3196	mkdir $tmp_data_catalog/${frelin[$i]}
	3197	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	3198	fi
	3199	got_tmp[$i]=true
	3200
	3201	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	3202	mv ${frelin[$i]} ${localin[$i]}
	3203
	3204	fi
	3205	fi
	3206
	3207
	3208	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	3209	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	3210	then
	3211
	3212	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	3213	then
	3214
	3215	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	3216	printf "\n file will be provided for $numprocs processors"
	3217	mkdir ${localin[$i]}
	3218	ival=$numprocs
	3219	(( ii = 0 ))
	3220	while (( ii <= ival-1 ))
	3221	do
	3222	if (( ii < 10 ))
	3223	then
	3224	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	3225	elif (( ii < 100 ))
	3226	then
	3227	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	3228	elif (( ii < 1000 ))
	3229	then
	3230	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	3231	else
	3232	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	3233	fi
	3234	(( ii = ii + 1 ))
	3235	done
	3236
	3237	else
	3238
	3239	if [[ $files_for_pes = true ]]
	3240	then
	3241
	3242	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	3243	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	3244	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	3245	# PER MOVE UMBENANNT WERDEN
	3246	printf "\n providing $numprocs files for the respective processors"
	3247	mkdir ${localin[$i]}
[183]	3248	if [[ $link_local_input = true ]]
	3249	then
	3250	printf " using ln -f\n"
	3251	cd ${absnamein[$i]}
	3252	for file in $(ls *)
	3253	do
	3254	ln -f $file ${localin[$i]}
	3255	done
	3256	cd $TEMPDIR
	3257	fi
	3258	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	3259	if [[ ! -f "${localin[$i]}/_0000" ]]
	3260	then
	3261	if [[ $link_local_input = true ]]
	3262	then
	3263	printf " ln failed for .../_0000, using cp...\n"
	3264	fi
	3265	cp -r ${absnamein[$i]}/* ${localin[$i]}
	3266	fi
[1]	3267
	3268	else
	3269	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	3270	if [[ $link_local_input = true ]]
	3271	then
	3272	printf " using ln -f\n"
	3273	ln -f ${absnamein[$i]} ${localin[$i]}
	3274	fi
	3275	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	3276	if [[ ! -f "${localin[$i]}" ]]
	3277	then
	3278	if [[ $link_local_input = true ]]
	3279	then
	3280	printf " ln failed, using cp...\n"
	3281	fi
	3282	cp ${absnamein[$i]} ${localin[$i]}
	3283	fi
[1]	3284	fi
	3285	fi
	3286	fi
	3287
	3288	done
	3289	if (( i != 0 ))
	3290	then
	3291	printf "\n$striche\n *** all INPUT-files provided \n"
	3292	fi
	3293
	3294
	3295	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	3296	(( i = 0 ))
	3297	while (( i < iic ))
	3298	do
	3299	(( i = i + 1 ))
	3300	if (( i == 1 ))
	3301	then
	3302	printf "\n\n *** execution of INPUT-commands:\n$striche"
	3303	fi
	3304	printf "\n >>> ${in_command[$i]}"
	3305	eval ${in_command[$i]}
	3306	if (( i == iic ))
	3307	then
	3308	printf "\n$striche\n"
	3309	fi
	3310	done
	3311
	3312
	3313	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	3314	cpurest=${cpumax}.
	3315
	3316
[260]	3317	# START DVR STREAMING SERVER
	3318	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3319	then
	3320	if [[ "$dvr_server" != "" ]]
	3321	then
	3322
	3323	printf "\n\n *** preparing the dvr streaming server configuration file"
	3324
	3325	# Check, if a dvr server is already running
	3326	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	3327	if [[ "$running_dvrserver_id" != "" ]]
	3328	then
	3329
[261]	3330	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	3331	printf "\n This server is used instead starting a new one!"
[261]	3332	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	3333
	3334	else
	3335
	3336	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	3337	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	3338	then
	3339	cp ${PALM_BIN}/.dvrserver.config .
	3340
	3341	# Entering the BASEDIR, UID and GID into this file
	3342	user_id=`id -u`
	3343	group_id=`id -g`
	3344	# & is needed as seperator, because TEMPDIR contains /
	3345	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	3346	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	3347	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	3348	mv .dvrserver.3 .dvrserver.config
	3349	rm .dvrserver.1 .dvrserver.2
	3350
	3351	# Start dvr server in background, get his id and print on terminal
	3352	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	3353	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	3354	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	3355	local_dvrserver_running=.TRUE.
	3356	else
	3357	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	3358	printf "\n \"$PALM_BIN\" "
	3359	locat=dvr
	3360	exit
	3361	fi
	3362
	3363	fi
	3364
	3365	else
	3366	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	3367	fi
	3368	fi
	3369
	3370
	3371	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	3372	# LESEN VON PALM)
	3373	cat > ENVPAR << %%END%%
	3374	&envpar run_identifier = '$fname', host = '$localhost',
	3375	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
[759]	3376	maximum_parallel_io_streams = $maximum_parallel_io_streams,
[260]	3377	maximum_cpu_time_allowed = ${cpumax}.,
	3378	revision = '$global_revision',
	3379	local_dvrserver_running = $local_dvrserver_running /
	3380
	3381	%%END%%
	3382
	3383
[1]	3384	# PROGRAMMSTART
	3385	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	3386	PATH=$PATH:$TEMPDIR
	3387
[359]	3388	# MPI debug option (argument checking, slows down execution due to increased latency)
	3389	if [[ "$mpi_debug" = true ]]
	3390	then
	3391	export MPI_CHECK_ARGS=1
	3392	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	3393	fi
	3394
[693]	3395	if [[ "$totalview" = true ]]
	3396	then
	3397	printf "\n *** totalview debugger will be used"
	3398	tv_opt="-tv"
	3399	else
	3400	tv_opt=""
	3401	fi
	3402
[1]	3403	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	3404	then
	3405	if [[ "$ENVIRONMENT" = BATCH ]]
	3406	then
[211]	3407	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	3408	then
	3409	printf "\n +++ debug is allowed in interactive mode only"
	3410	locat=debug
	3411	exit
	3412	fi
[1]	3413	fi
[5]	3414	if [[ $localhost = decalpha ]]
[1]	3415	then
	3416	dxladebug a.out
[622]	3417	elif [[ $localhost = ibmh ]]
[1]	3418	then
	3419
	3420	# SETUP THE IBM MPI ENVIRONMENT
	3421	export MP_SHARED_MEMORY=yes
	3422	export AIXTHREADS_SCOPE=S
	3423	export OMP_NUM_THREADS=$threads_per_task
	3424	export AUTHSTATE=files
	3425	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3426
	3427	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	3428	export MP_ADAPTER_USE=shared
	3429	export MP_CPU_USE=multiple
	3430	export MP_TIMEOUT=1200
	3431
	3432	unset MP_TASK_AFFINITY
	3433
	3434	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	3435	#(( ii = 1 ))
	3436	#while (( ii <= $numprocs ))
	3437	#do
	3438	# echo $localhost_realname >> hostfile
	3439	# (( ii = ii + 1 ))
	3440	#done
	3441	#export MP_HOSTFILE=hostfile
	3442
	3443	if [[ "$LOADLBATCH" = yes ]]
	3444	then
	3445	totalview poe a.out $ROPTS
	3446	else
	3447	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3448	export TVDSVRLAUNCHCMD=ssh
	3449	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3450	fi
[211]	3451	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	3452	then
	3453	# CURRENTLY NO DEBUGGER ON LCSGI
	3454	if [[ $run_coupled_model = true ]]
	3455	then
	3456	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	3457	locat=debug
	3458	exit
[223]	3459	else
	3460	echo "no_coupling" > runfile_atmos
[211]	3461	fi
	3462	(( ii = $numprocs / $threads_per_task ))
	3463	export OMP_NUM_THREADS=$threads_per_task
	3464	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3465	if [[ $threads_per_task != 1 ]]
	3466	then
	3467	printf "\n threads per task: $threads_per_task"
	3468	fi
	3469	printf "\n\n"
[223]	3470	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3471	then
	3472	# export MPI_LAUNCH_TIMEOUT=360
	3473	if [[ "$totalview" = true ]]
	3474	then
	3475	printf "\n running totalview debugger"
[693]	3476	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
[223]	3477	else
	3478	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3479	fi
	3480	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3481	then
	3482	# ulimit -s 300000 # A too large stack size causes problems
	3483	# export MV2_NUM_PORTS=2
	3484	# export MV2_CPU_MAPPING=0:1:2:3
[362]	3485	if [[ "$totalview" = true ]]
	3486	then
	3487	printf "\n running totalview debugger"
[693]	3488	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
[362]	3489	else
	3490	mpiexec ./a.out $ROPTS < runfile_atmos
	3491	fi
[223]	3492	fi
[1]	3493	else
	3494	printf "\n +++ no debug available on \"$localhost\" "
	3495	printf "\n or not implemented in mrun so far"
	3496	locat=debug
	3497	exit
	3498	fi
[622]	3499
	3500	# end debug mode
[1]	3501	else
[622]	3502
	3503	# normal execution
[1]	3504	if [[ -n $numprocs ]]
	3505	then
	3506	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	3507	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	3508	then
	3509	# SETUP THE IBM MPI ENVIRONMENT
[693]	3510	if [[ $host != ibmh && $host != ibmkisti ]]
[312]	3511	then
	3512	export MP_SHARED_MEMORY=yes
	3513	export AIXTHREAD_SCOPE=S
	3514	export OMP_NUM_THREADS=$threads_per_task
	3515	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	3516	export AUTHSTATE=files
	3517	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3518	# export MP_PRINTENV=yes
[1]	3519
[312]	3520	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	3521	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	3522	export MP_WAIT_MODE=poll
	3523	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	3524	fi
[693]	3525
	3526	if [[ $host = ibmkisti ]]
	3527	then
	3528	export LANG=en_US
	3529	export MP_SHARED_MEMORY=yes
[696]	3530	if [[ $threads_per_task = 1 ]]
	3531	then
	3532	export MP_SINGLE_THREAD=yes
	3533	export MEMORY_AFFINITY=MCM
	3534	else
	3535	export OMP_NUM_THREADS=$threads_per_task
	3536	fi
[693]	3537	fi
	3538
[1]	3539	if [[ "$LOADLBATCH" = yes ]]
	3540	then
	3541	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	3542	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3543	then
[102]	3544	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3545	else
[343]	3546	if [[ $run_coupled_model = false ]]
	3547	then
	3548	if [[ "$ocean_file_appendix" = true ]]
	3549	then
	3550	echo "precursor_ocean" > runfile_atmos
	3551	else
	3552	echo "precursor_atmos" > runfile_atmos
	3553	fi
	3554	else
	3555	(( iia = $numprocs_atmos / $threads_per_task ))
	3556	(( iio = $numprocs_ocean / $threads_per_task ))
	3557	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3558	printf "\n using $coupled_mode coupling"
	3559	printf "\n\n"
	3560	echo "coupled_run $iia $iio" > runfile_atmos
	3561	fi
	3562	poe ./a.out $ROPTS < runfile_atmos
[1]	3563	fi
	3564	else
[622]	3565	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
[1]	3566	then
[102]	3567	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[693]	3568	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
[1]	3569	then
	3570	if [[ -f $hostfile ]]
	3571	then
	3572	cp $hostfile hostfile
	3573	else
	3574	(( ii = 1 ))
	3575	while (( ii <= $numprocs ))
	3576	do
	3577	echo $localhost_realname >> hostfile
	3578	(( ii = ii + 1 ))
	3579	done
	3580	fi
	3581	export MP_HOSTFILE=hostfile
[331]	3582	if [[ $run_coupled_model = false ]]
	3583	then
	3584	if [[ "$ocean_file_appendix" = true ]]
	3585	then
	3586	echo "precursor_ocean" > runfile_atmos
	3587	else
	3588	echo "precursor_atmos" > runfile_atmos
	3589	fi
	3590	else
	3591	(( iia = $numprocs_atmos / $threads_per_task ))
	3592	(( iio = $numprocs_ocean / $threads_per_task ))
	3593	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3594	printf "\n using $coupled_mode coupling"
	3595	printf "\n\n"
	3596	echo "coupled_run $iia $iio" > runfile_atmos
	3597	fi
[622]	3598	if [[ $localhost = ibmy ]]
	3599	then
	3600	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3601	else
	3602	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
	3603	fi
[331]	3604
[1]	3605	else
	3606	if [[ "$host_file" = "" ]]
	3607	then
	3608	printf "\n +++ no hostfile given in configuration file"
	3609	locat=config_file
	3610	exit
	3611	else
	3612	eval host_file=$host_file
	3613	fi
	3614	export MP_HOSTFILE=$host_file
[102]	3615	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3616	fi
	3617	fi
[251]	3618	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3619	then
	3620	(( ii = nodes ))
	3621	if [[ $ii = 1 ]]
	3622	then
	3623	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3624	export MPIPROGINF=YES
[61]	3625	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3626	echo "*** execution on single node with mpirun"
[102]	3627	mpirun -np $numprocs ./a.out $ROPTS
[1]	3628	else
	3629	(( i = 0 ))
	3630	while (( i < ii ))
	3631	do
	3632	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3633	(( i = i + 1 ))
	3634	done
	3635
	3636	echo "#!/bin/sh" > mpi_exec_shell
	3637	echo " " >> mpi_exec_shell
	3638	echo "set -u" >> mpi_exec_shell
	3639	echo "F_ERRCNT=0" >> mpi_exec_shell
	3640	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3641	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3642	echo "cpurest=$cpurest" >> mpi_exec_shell
	3643	echo "fname=$fname" >> mpi_exec_shell
	3644	echo "localhost=$localhost" >> mpi_exec_shell
	3645	echo "return_addres=$return_addres" >> mpi_exec_shell
	3646	echo "return_username=$return_username" >> mpi_exec_shell
	3647	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3648	echo "write_binary=$write_binary" >> mpi_exec_shell
	3649	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3650	echo " " >> mpi_exec_shell
	3651	echo "export F_ERRCNT" >> mpi_exec_shell
	3652	echo "export MPIPROGINV" >> mpi_exec_shell
	3653	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3654	echo "export cpurest" >> mpi_exec_shell
	3655	echo "export fname" >> mpi_exec_shell
	3656	echo "export localhost" >> mpi_exec_shell
	3657	echo "export return_addres" >> mpi_exec_shell
	3658	echo "export return_username" >> mpi_exec_shell
	3659	echo "export tasks_per_node" >> mpi_exec_shell
	3660	echo "export write_binary" >> mpi_exec_shell
	3661	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3662	echo " " >> mpi_exec_shell
[102]	3663	echo "exec ./a.out" >> mpi_exec_shell
[1]	3664
	3665	chmod u+x mpi_exec_shell
	3666	export MPIPROGINF=YES
	3667	mpirun -f multinode_config &
	3668	wait
	3669
	3670	fi
[440]	3671	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
[1]	3672	then
	3673
	3674	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3675	# DOES NOT EXIST
[179]	3676	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	3677	then
[179]	3678	if [[ -f $hostfile ]]
	3679	then
	3680	cp $hostfile hostfile
[746]	3681	(( ii = $numprocs / $threads_per_task ))
[179]	3682	else
	3683	(( ii = 1 ))
	3684	while (( ii <= $numprocs / $threads_per_task ))
	3685	do
	3686	echo $localhost_realname >> hostfile
	3687	(( ii = ii + 1 ))
	3688	done
	3689	fi
	3690	eval zeile=\"`head -n $ii hostfile`\"
	3691	printf "\n *** running on: $zeile"
[1]	3692	fi
[179]	3693
[1]	3694	(( ii = $numprocs / $threads_per_task ))
	3695	export OMP_NUM_THREADS=$threads_per_task
[696]	3696	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3697	if [[ $threads_per_task != 1 ]]
	3698	then
[405]	3699	# increase stack size to unlimited, because large runs
	3700	# may abort otherwise
	3701	ulimit -Ss unlimited
	3702	printf "\n threads per task: $threads_per_task stacksize: unlimited"
[1]	3703	fi
[102]	3704	if [[ $run_coupled_model = false ]]
[1]	3705	then
[291]	3706	if [[ "$ocean_file_appendix" = true ]]
	3707	then
	3708	echo "precursor_ocean" > runfile_atmos
	3709	else
	3710	echo "precursor_atmos" > runfile_atmos
	3711	fi
[102]	3712	printf "\n\n"
[179]	3713	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3714	then
[221]	3715	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3716	then
[366]	3717	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
	3718	# export MPI_DSM_DISTRIBUTE=1
	3719	# MPI_DSM_CPULIST: pin MPI processes to cores
[377]	3720	if [[ $use_openmp = false ]]
	3721	then
[412]	3722	if [[ "$sgi_feature" = ice2 ]]
	3723	then
	3724	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
	3725	else
	3726	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
	3727	fi
[622]	3728	else
	3729	unset MPI_DSM_CPULIST
[377]	3730	fi
[366]	3731	# MPI_IB_RAILS: use both IB rails on ICE2
	3732	export MPI_BUFS_PER_HOST=512
	3733	export MPI_IB_RAILS=2
[369]	3734	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
	3735	export MPI_CONNECTIONS_THRESHOLD=8192
[738]	3736	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
[562]	3737	export MPI_TYPE_DEPTH=20
[738]	3738	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
[683]	3739	export MPI_GROUP_MAX=64
[738]	3740	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
[693]	3741	if [[ $use_openmp = true ]]
	3742	then
	3743	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
	3744	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
	3745	else
	3746	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
	3747	fi
[388]	3748
	3749	# next is test for openmp usage
[622]	3750	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
	3751	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
[221]	3752	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3753	then
[374]	3754	export MV2_NUM_PORTS=2
[376]	3755	# The default setting of MV2_CPU_MAPPING gives best results
[405]	3756	# export MV2_ENABLE_AFFINITY=1
[376]	3757	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
[412]	3758	# if [[ "$sgi_feature" = ice2 ]]
	3759	# then
	3760	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
	3761	# else
	3762	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
	3763	# fi
[678]	3764	if [[ $use_openmp = true ]]
	3765	then
	3766	unset MV2_CPU_MAPPING
	3767	export MV2_ENABLE_AFFINITY=0
	3768	fi
[412]	3769	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
[678]	3770	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
[622]	3771	if [[ $use_openmp = true ]]
[405]	3772	then
[678]	3773	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
[693]	3774	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
[405]	3775	else
[693]	3776	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
[405]	3777	fi
[738]	3778	elif [[ "$mpilib" = impi ]]
	3779	then
	3780	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
	3781	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
[221]	3782	fi
[892]	3783	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
[179]	3784	then
[544]	3785	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[755]	3786	elif [[ $host = lcflow ]]
	3787	then
	3788	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
[164]	3789	else
[223]	3790	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3791	fi
[1]	3792	else
[164]	3793
[206]	3794	# currently there is no full MPI-2 support on ICE and XT4
	3795	(( iia = $numprocs_atmos / $threads_per_task ))
	3796	(( iio = $numprocs_ocean / $threads_per_task ))
	3797	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3798	printf "\n using $coupled_mode coupling"
[102]	3799	printf "\n\n"
[164]	3800
[206]	3801	if [[ $coupled_mode = "mpi2" ]]
[164]	3802	then
[206]	3803	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3804	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3805	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3806	then
[197]	3807
[221]	3808	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3809	then
	3810	# export MPI_LAUNCH_TIMEOUT=360
	3811	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3812	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3813	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3814	then
	3815	# ulimit -s 300000 # A too large stack size causes problems
	3816	# export MV2_NUM_PORTS=2
	3817	# export MV2_CPU_MAPPING=0:1:2:3
	3818	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3819	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3820	fi
[197]	3821
[892]	3822	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
[206]	3823	then
[197]	3824
[206]	3825	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3826	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3827
	3828	else
	3829	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3830	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3831	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3832	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3833	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3834	fi
	3835	wait
	3836
[164]	3837	else
	3838
[206]	3839	echo "coupled_run $iia $iio" > runfile_atmos
	3840	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3841	then
	3842
[221]	3843	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3844	then
	3845	# export MPI_LAUNCH_TIMEOUT=360
	3846	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3847	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3848	then
	3849	# ulimit -s 300000 # A too large stack size causes problems
	3850	# export MV2_NUM_PORTS=2
	3851	# export MV2_CPU_MAPPING=0:1:2:3
	3852	mpiexec ./a.out $ROPTS < runfile_atmos
	3853	fi
[206]	3854
[892]	3855	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
[206]	3856	then
	3857
	3858	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3859
[718]	3860	elif [[ $host = lck \|\| $host = lckordi ]]
[367]	3861	then
	3862	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
[206]	3863	fi
	3864	wait
[164]	3865	fi
[102]	3866
[206]	3867	fi
[1]	3868	elif [[ $host = decalpha ]]
	3869	then
[102]	3870	dmpirun -np $numprocs a.out $ROPTS
[440]	3871	elif [[ $host = lckyoto ]]
	3872	then
	3873	set -xv
	3874	export P4_RSHCOMMAND=plesh
	3875	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
	3876	if [[ "$ENVIRONMENT" = BATCH ]]
	3877	then
[505]	3878	if [[ "$cond2" = fujitsu ]]
	3879	then
	3880	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
	3881	elif [[ "cond2" = pgi ]]
	3882	then
	3883	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
	3884	else
	3885	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
	3886	fi
[440]	3887	else
[505]	3888	if [[ "$cond2" = "" ]]
	3889	then
	3890	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
	3891	else
	3892	mpirun -np $numprocs ./a.out $ROPTS
	3893	fi
[440]	3894	fi
	3895	set +xv
[1]	3896	elif [[ $host = lctit ]]
	3897	then
[678]	3898	export OMP_NUM_THREADS=$threads_per_task
	3899	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3900	if [[ "$threads_per_task" != 1 ]]
	3901	then
	3902	export MV2_ENABLE_AFFINITY=0
	3903	fi
	3904	echo "----- PBS_NODEFILE content:"
	3905	cat $PBS_NODEFILE
	3906	echo "-----"
	3907	(( ii = $numprocs / $threads_per_task ))
	3908	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
	3909	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
[1]	3910	else
[102]	3911	mpprun -n $numprocs a.out $ROPTS
[1]	3912	fi
	3913	[[ $? != 0 ]] && execution_error=true
	3914
	3915
	3916	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3917	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3918	then
	3919	apprentice
	3920	fi
	3921	else
[102]	3922	a.out $ROPTS
[1]	3923	fi
	3924	fi
	3925	if [[ $? != 0 \|\| $execution_error = true ]]
	3926	then
	3927
	3928	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3929	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3930	printf "\n +++ runtime error occured"
	3931	locat=execution
	3932	exit
	3933	else
[102]	3934	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3935	printf "\n$striche\n *** execution finished \n"
[260]	3936
[261]	3937	# Stop the dvr streaming server and process the dvr output in order
	3938	# to create dvrs- and html-files containing all streams
[260]	3939	if [[ "$dvrserver_id" != "" ]]
	3940	then
	3941	kill $dvrserver_id
	3942	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3943
[262]	3944	# If there is a directory, data have been output by the
	3945	# streaming server. Otherwise, user has chosen dvrp_output=local
	3946	if [[ -d DATA_DVR ]]
	3947	then
[261]	3948
[262]	3949	# Add the current dvr configuration file to the dvr output
	3950	# directory
	3951	cp .dvrserver.config DATA_DVR
	3952
	3953	# Process the dvr output (option -s for also generating
	3954	# sequence mode data)
	3955	process_dvr_output -d DATA_DVR -f $fname -s
	3956
	3957	else
	3958
	3959	# Process the local output
	3960	process_dvr_output -l -d DATA_DVR -f $fname
	3961
	3962	fi
	3963
	3964	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3965	then
	3966
	3967	# Process dvr output generated in local mode (dvrp_output=local)
	3968	process_dvr_output -l -d DATA_DVR -f $fname
	3969
[260]	3970	fi
[1]	3971	fi
	3972
	3973
	3974
[503]	3975	# Call of combine_plot_fields in order to merge single files written
	3976	# by each PE into one file.
[920]	3977	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
	3978	then
	3979	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
	3980	printf "\n 2d- and/or 3d-data may be incomplete!"
	3981	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
	3982	elif [[ "$combine_plot_fields" == true ]]
	3983	then
	3984	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
	3985	combine_plot_fields${block}.x
	3986	else
	3987	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
	3988	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
	3989	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
	3990	fi
[503]	3991
	3992
	3993
[1]	3994	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3995	(( i = 0 ))
	3996	while (( i < ioc ))
	3997	do
	3998	(( i = i + 1 ))
	3999	if (( i == 1 ))
	4000	then
	4001	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	4002	fi
	4003	printf "\n >>> ${out_command[$i]}"
	4004	eval ${out_command[$i]}
	4005	if (( i == ioc ))
	4006	then
	4007	printf "\n$striche\n"
	4008	fi
	4009	done
	4010
	4011
	4012	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	4013	if [[ $do_trace = true ]]
	4014	then
	4015	printf "\n\n"
	4016	ls -al
	4017	fi
	4018
	4019
	4020
	4021	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	4022	(( i = 0 ))
	4023	while (( i < iout ))
	4024	do
	4025	(( i = i + 1 ))
	4026	if (( i == 1 ))
	4027	then
	4028	printf "\n\n *** saving OUTPUT-files:\n$striche"
	4029	fi
	4030
	4031	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	4032	files_for_pes=false; filetyp=file
	4033	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	4034	then
	4035	files_for_pes=true; filetyp=directory
	4036	actionout[$i]=""
	4037	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	4038	then
	4039	actionout[$i]=""
	4040	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	4041	then
	4042	files_for_pes=true; filetyp=directory
	4043	actionout[$i]="ar"
	4044	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	4045	then
	4046	actionout[$i]="ar"
	4047	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	4048	then
	4049	files_for_pes=true; filetyp=directory
	4050	actionout[$i]="fl"
	4051	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	4052	then
	4053	actionout[$i]="fl"
	4054	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	4055	then
	4056	files_for_pes=true; filetyp=directory
	4057	actionout[$i]="tr"
	4058	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	4059	then
	4060	actionout[$i]="tr"
	4061	fi
	4062
	4063	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	4064	then
	4065	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	4066	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	4067	then
	4068	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	4069	else
	4070
	4071
	4072	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	4073	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	4074	# REMOTE-RECHNUNGEN
	4075	if [[ "${actionout[$i]}" = tr ]]
	4076	then
	4077	if [[ $localhost != $fromhost ]]
	4078	then
	4079	if [[ $files_for_pes = false ]]
	4080	then
	4081	cps=""
	4082	cst=""
	4083	else
	4084	cps=-c
	4085	cst="/"
	4086	fi
[622]	4087	if [[ $localhost = nech ]]
[1]	4088	then
	4089
	4090	# TRANSFER IN EIGENSTAENDIGEM JOB
	4091	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	4092	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	4093	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	4094	if [[ $files_for_pes = false ]]
	4095	then
	4096	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	4097	else
	4098	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	4099	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	4100	fi
	4101
	4102	echo "set -x" > transfer_${localout[$i]}
	4103	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	4104
	4105	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	4106	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	4107	printf "\n or higher cycle\n"
	4108	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	4109
[1]	4110	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	4111
	4112	if [[ $localhost = nech ]]
	4113	then
[82]	4114	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	4115	else
	4116	if [[ "$LOGNAME" = b323013 ]]
	4117	then
[164]	4118	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	4119	else
[164]	4120	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	4121	fi
	4122	fi
	4123
	4124	else
	4125
	4126	# TRANSFER INNERHALB DIESES JOBS
	4127	transfer_failed=false
[82]	4128	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	4129	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	4130	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	4131	[[ $? != 0 ]] && transfer_failed=true
[1]	4132
	4133	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	4134	# LOKALER MASCHINE ANLEGEN
	4135	if [[ $transfer_failed = true ]]
	4136	then
	4137	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	4138	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	4139
	4140	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	4141	# ANLEGEN.
	4142	eval local_catalog=${pathout[$i]}
	4143	if [[ ! -d $local_catalog ]]
	4144	then
	4145	printf " *** local directory does not exist. Trying to create:\n"
	4146	printf " $local_catalog \n"
	4147	mkdir -p $local_catalog
	4148	fi
	4149	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	4150	transfer_problems=true
	4151	fi
	4152	fi
	4153	else
	4154
	4155	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	4156	actionout[$i]=""
	4157	fi
	4158	fi
	4159
	4160
	4161	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	4162	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	4163	# REMOTE-RECHNUNGEN
	4164	if [[ "${actionout[$i]}" = tra ]]
	4165	then
	4166	if [[ $localhost != $fromhost ]]
	4167	then
[622]	4168	if [[ $localhost = ibmh \|\| $localhost = nech ]]
[1]	4169	then
	4170
	4171	# TRANSFER IN EIGENSTAENDIGEM JOB
	4172	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	4173	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	4174	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	4175	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	4176
	4177	echo "set -x" > transfer_${localout[$i]}
	4178	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	4179
	4180	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	4181	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	4182	printf "\n or higher cycle\n"
	4183	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	4184
[1]	4185	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	4186
	4187	if [[ $localhost = nech ]]
	4188	then
[82]	4189	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	4190	else
	4191	if [[ $LOGNAME = b323013 ]]
	4192	then
[164]	4193	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	4194	else
[164]	4195	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	4196	fi
	4197	fi
	4198
	4199	else
	4200
	4201	# TRANSFER INNERHALB DIESES JOBS
	4202	transfer_failed=false
[82]	4203	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	4204	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	4205	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	4206	[[ $? != 0 ]] && transfer_failed=true
[1]	4207
	4208	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	4209	# LOKALER MASCHINE ANLEGEN
	4210	if [[ $transfer_failed = true ]]
	4211	then
	4212	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	4213	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	4214
	4215	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	4216	# ANLEGEN
	4217	eval local_catalog=${pathout[$i]}
	4218	if [[ ! -d $local_catalog ]]
	4219	then
	4220	printf " *** local directory does not exist. Trying to create:\n"
	4221	printf " $local_catalog \n"
	4222	mkdir -p $local_catalog
	4223	fi
	4224
	4225	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	4226	transfer_problems=true
	4227	fi
	4228	fi
	4229	else
	4230
	4231	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	4232	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	4233	actionout[$i]=a
	4234	fi
	4235	fi
	4236
	4237
	4238	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	4239	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	4240	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	4241	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	4242	if [[ "${actionout[$i]}" = fl ]]
	4243	then
	4244	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4245	chmod g+rx $tmp_data_catalog
	4246	if [[ $files_for_pes = false ]]
	4247	then
	4248	printf "\n >>> OUTPUT: ${localout[$i]} to"
	4249	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	4250	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	4251	else
	4252	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	4253	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	4254	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	4255	cd ${localout[$i]}
	4256	for file in $(ls *)
	4257	do
	4258	ln -f $file $tmp_data_catalog/${frelout[$i]}
	4259	done
	4260	cd $TEMPDIR
[1]	4261	fi
	4262
	4263
	4264	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	4265	if [[ $store_on_archive_system = true ]]
	4266	then
	4267
	4268	if [[ $archive_system = asterix ]]
	4269	then
	4270	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4271	if [[ $files_for_pes = false ]]
	4272	then
	4273	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4274	else
	4275	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4276	fi
	4277	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4278	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	4279	echo "then" >> archive_${frelout[$i]}
	4280	echo " do_stageout=false" >> archive_${frelout[$i]}
	4281	echo "else" >> archive_${frelout[$i]}
	4282	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	4283	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	4284	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	4285	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	4286	if [[ $files_for_pes = false ]]
	4287	then
	4288	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	4289	else
	4290	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	4291	fi
	4292	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	4293	echo "fi" >> archive_${frelout[$i]}
	4294	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4295	elif [[ $archive_system = DMF ]]
	4296	then
	4297	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4298	if [[ $files_for_pes = false ]]
	4299	then
	4300	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	4301	locat=DMF
	4302	exit
	4303	else
	4304	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	4305	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	4306	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	4307	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	4308	fi
	4309	elif [[ $archive_system = tivoli ]]
	4310	then
	4311	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4312	if [[ $files_for_pes = false ]]
	4313	then
	4314	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4315	echo "set -x" >> archive_${frelout[$i]}
	4316	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4317	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4318	else
	4319
	4320	echo "set -x" >> archive_${frelout[$i]}
	4321	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	4322	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4323	cd $tmp_data_catalog
	4324	all_files=`ls -1 ${frelout[$i]}/*`
	4325	cd - > /dev/null
	4326	(( inode = 0 ))
	4327	(( tp1 = tasks_per_node + 1 ))
	4328	while (( inode < nodes ))
	4329	do
	4330	# echo "*** all_files = \"$all_files\" "
	4331	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	4332	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	4333	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	4334	# echo "*** files = \"$files\" "
	4335	# echo "*** all_files = \"$all_files\" "
[416]	4336	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4337	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4338	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
	4339	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[397]	4340	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	4341	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[1]	4342	(( inode = inode + 1 ))
	4343	done
	4344	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4345	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4346	fi
	4347	elif [[ $archive_system = ut ]]
	4348	then
	4349	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4350	if [[ $files_for_pes = false ]]
	4351	then
	4352	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4353	echo "set -x" >> archive_${frelout[$i]}
	4354	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4355	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4356	else
	4357
	4358	echo "set -x" >> archive_${frelout[$i]}
	4359	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	4360	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4361	cd $tmp_data_catalog
	4362	all_files=`ls -1 ${frelout[$i]}/*`
	4363	cd - > /dev/null
	4364	(( inode = 0 ))
	4365	(( tp1 = tasks_per_node + 1 ))
	4366	while (( inode < nodes ))
	4367	do
	4368	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	4369	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	4370	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4371	(( inode = inode + 1 ))
	4372	done
	4373	fi
	4374	elif [[ $archive_system = none ]]
	4375	then
	4376	printf " +++ archiving on $localhost not available!\n"
	4377	fi
	4378
	4379	if [[ $archive_system != none ]]
	4380	then
[399]	4381	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
[1]	4382	then
[164]	4383	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[416]	4384	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
[1]	4385	elif [[ $localhost = nech ]]
	4386	then
[82]	4387	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	4388	fi
	4389	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4390	fi
	4391	else
[399]	4392	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
[1]	4393	fi
	4394
	4395
	4396	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	4397	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	4398	if [[ $files_for_pes = false ]]
	4399	then
	4400	cat /dev/null > ${pathout[$i]}
	4401	else
	4402	mkdir -p ${pathout[$i]}
	4403	fi
	4404
	4405	fi
	4406
	4407
	4408	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	4409	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	4410	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	4411	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	4412	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	4413	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	4414	if [[ "${actionout[$i]}" = ar ]]
	4415	then
	4416	if [[ $files_for_pes = false ]]
	4417	then
	4418	printf "\n >>> OUTPUT: ${localout[$i]} to"
	4419	printf "\n ${pathout[$i]}"
	4420	printf "\n File will be copied to archive-system ($archive_system) !\n"
	4421	else
	4422	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	4423	printf "\n ${pathout[$i]}"
	4424	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	4425	fi
	4426	mv ${localout[$i]} ${frelout[$i]}
	4427
	4428	file_saved=false
	4429
	4430	if [[ $archive_system = asterix ]]
	4431	then
	4432	do_stageout=true
	4433	(( stageout_anz = 0 ))
	4434	while [[ $do_stageout = true ]]
	4435	do
	4436	if [[ $files_for_pes = false ]]
	4437	then
	4438	stageout ${frelout[$i]} > STAGE_OUTPUT
	4439	else
	4440	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	4441	fi
	4442	cat STAGE_OUTPUT
	4443	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	4444	then
	4445	file_saved=true
	4446	do_stageout=false
	4447	else
	4448	if [[ $files_for_pes = false ]]
	4449	then
	4450	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	4451	else
	4452	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	4453	fi
	4454	(( stageout_anz = stageout_anz + 1 ))
	4455	if (( stageout_anz == 10 ))
	4456	then
	4457	printf "\n +++ stoped after 10 unsuccessful tries!"
	4458	archive_save=false
	4459	do_stageout=false
	4460	else
	4461	printf "\n *** new try to store on archive after 15 min:"
	4462	sleep 900
	4463	fi
	4464	fi
	4465	done
	4466	elif [[ $archive_system = DMF ]]
	4467	then
	4468	if [[ $files_for_pes = false ]]
	4469	then
	4470	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	4471	locat=DMF
	4472	exit
	4473	else
	4474	rm -rf $ARCHIVE/${frelout[$i]}
	4475	cp -r ${frelout[$i]} $ARCHIVE
	4476	fi
	4477	file_saved=true
	4478	elif [[ $archive_system = tivoli ]]
	4479	then
	4480	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4481	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4482	# GELEGT WERDEN
	4483	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4484	chmod g+rx $tmp_data_catalog
	4485	if [[ $files_for_pes = false ]]
	4486	then
	4487	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4488	else
	4489	mkdir $tmp_data_catalog/${frelout[$i]}
	4490	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4491	fi
	4492
	4493	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4494	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4495	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4496	if [[ $files_for_pes = false ]]
	4497	then
	4498	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4499	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4500	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4501	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4502	else
	4503	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4504	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4505	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4506	fi
	4507
[164]	4508	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	4509	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4510	file_saved=true
	4511
	4512	elif [[ $archive_system = ut ]]
	4513	then
	4514	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4515	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4516	# GELEGT WERDEN
	4517	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4518	chmod g+rx $tmp_data_catalog
	4519	if [[ $files_for_pes = false ]]
	4520	then
	4521	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4522	else
	4523	mkdir $tmp_data_catalog/${frelout[$i]}
	4524	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4525	fi
	4526
	4527	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4528	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4529	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4530	if [[ $files_for_pes = false ]]
	4531	then
	4532	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4533	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4534	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4535	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4536	else
	4537	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4538	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4539	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4540	fi
	4541
[82]	4542	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	4543	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4544	file_saved=true
	4545
	4546	else
	4547	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	4548	archive_save=false
	4549	fi
	4550	if [[ $file_saved = true ]]
	4551	then
	4552	if [[ $files_for_pes = false ]]
	4553	then
	4554	cat /dev/null > ${pathout[$i]}
	4555	else
	4556	mkdir -p ${pathout[$i]}
	4557	fi
	4558	fi
	4559	fi
	4560
	4561	# APPEND AUF LOKALER MASCHINE
	4562	if [[ "${actionout[$i]}" = "a" ]]
	4563	then
[741]	4564	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
	4565	then
	4566	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
	4567	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
	4568	else
	4569	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	4570	cat ${localout[$i]} >> ${pathout[$i]}
	4571	fi
[1]	4572	fi
	4573
	4574	# KOPIEREN AUF LOKALER MASCHINE
	4575	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	4576	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	4577	then
	4578
	4579	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	4580	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	4581	then
	4582	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	4583	if [[ $link_local_output = true ]]
	4584	then
	4585	printf " using ln -f\n"
	4586	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4587	fi
	4588	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4589	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	4590	then
	4591	if [[ $link_local_output = true ]]
	4592	then
	4593	printf " ln failed, using cp...\n"
	4594	fi
	4595	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4596	fi
[1]	4597	else
	4598	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	4599	if [[ $link_local_output = true ]]
	4600	then
	4601	printf " using ln -f\n"
	4602	ln -f ${localout[$i]} ${pathout[$i]}
	4603	fi
	4604	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4605	if [[ ! -f "${pathout[$i]}" ]]
	4606	then
	4607	if [[ $link_local_output = true ]]
	4608	then
	4609	printf " ln failed, using cp...\n"
	4610	fi
	4611	cp ${localout[$i]} ${pathout[$i]}
	4612	fi
[1]	4613	fi
	4614
	4615	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	4616	then
	4617
	4618	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	4619	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	4620	# WIRD DANN KOPIERT
	4621	# PER MOVE UMBENANNT WERDEN
	4622	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	4623	if [[ $link_local_output = true ]]
	4624	then
	4625	printf " using ln -f\n"
	4626	mkdir ${pathout[$i]}
	4627	cd ${localout[$i]}
	4628	for file in $(ls *)
	4629	do
	4630	ln -f $file ${pathout[$i]}
	4631	done
	4632	cd $TEMPDIR
	4633	fi
	4634	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	4635	if [[ ! -f "${pathout[$i]}/_0000" ]]
	4636	then
	4637	if [[ $link_local_output = true ]]
	4638	then
	4639	printf " ln failed for .../_0000, using cp...\n"
	4640	fi
	4641	cp -r ${localout[$i]} ${pathout[$i]}
	4642	fi
[1]	4643
	4644	fi
	4645	fi
	4646	done
	4647	if (( i != 0 ))
	4648	then
	4649	if [[ $transfer_problems = true ]]
	4650	then
	4651	printf "\n$striche\n *** OUTPUT-files saved"
	4652	printf "\n +++ WARNING: some data transfers failed! \n"
	4653	else
	4654	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4655	fi
	4656	fi
	4657
	4658
	4659	# EVENTUELL FOLGEJOB STARTEN
	4660	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4661	if [[ -f CONTINUE_RUN ]]
	4662	then
	4663
	4664	if [[ $archive_save = true ]]
	4665	then
	4666
	4667	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4668	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4669	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4670	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4671	# HANDEN
	4672	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4673	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4674	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4675	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4676	then
	4677	mc=`echo $mc \| sed 's/#/f/g'`
	4678	fi
	4679
	4680
	4681	# JOB STARTEN
	4682	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4683	echo " $mc"
	4684	printf "\n$striche\n"
	4685	if [[ $localhost != $fromhost ]]
	4686	then
	4687
[693]	4688	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
[1]	4689	then
	4690	echo "*** ssh will be used to initiate restart-runs!"
	4691	echo " return_addres=\"$return_addres\" "
	4692	echo " return_username=\"$return_username\" "
[635]	4693	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
[1]	4694	then
[970]	4695	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4696	else
[693]	4697	if [[ $localhost = ibmkisti ]]
	4698	then
	4699	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
	4700	else
	4701	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4702	fi
[1]	4703	fi
	4704	else
	4705	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4706	locat=restart; exit
	4707	fi
	4708
	4709	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4710	# DER AKTUELLE JOB ENDET
[399]	4711	if [[ $queue = special1q ]]
	4712	then
	4713	sleep 120
	4714	else
	4715	sleep 30
	4716	fi
[1]	4717
	4718	else
	4719
	4720	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4721	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4722	cd $LOCAL_PWD
[108]	4723	if [[ $localhost = lcfimm ]]
	4724	then
	4725	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4726	else
	4727	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4728	fi
[1]	4729	cd - > /dev/null
	4730	fi
	4731	printf "\n$striche\n *** restart-run initiated \n"
	4732
	4733
	4734	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4735	# GEHOLT WORDEN SIND, LOESCHEN
	4736	(( i = 0 ))
	4737	while (( i < iin ))
	4738	do
	4739	(( i = i + 1 ))
	4740	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4741	then
	4742	rm -r $tmp_data_catalog/${frelin[$i]}
	4743	fi
	4744	done
	4745
	4746	else
	4747
	4748	printf "\n +++ no restart-run possible, since errors occured"
	4749	printf "\n during the archive process"
	4750	fi
	4751
	4752	fi
	4753
	4754
	4755
	4756	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4757	if [[ "$email_notification" != "none" ]]
[1]	4758	then
	4759
	4760	if [[ $localhost != $fromhost ]]
	4761	then
	4762	if [[ -f CONTINUE_RUN ]]
	4763	then
	4764	echo "PALM restart run necessary" > email_text
	4765	echo "description header of actual run:" >> email_text
	4766	cat CONTINUE_RUN >> email_text
	4767	echo "mrun-command to restart:" >> email_text
	4768	echo "$mc" >> email_text
	4769	else
	4770	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4771	fi
	4772	mail $email_notification < email_text
	4773	printf "\n *** email notification sent to \"$email_notification\" "
	4774	fi
	4775	fi
	4776
	4777
	4778
	4779	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4780	cd $HOME
	4781	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4782
	4783	else
	4784
	4785
	4786	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4787	# CHENDE AKTIONEN DURCHGEFUEHRT
	4788
	4789	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[821]	4790	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	4791	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4792	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4793	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4794	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4795	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4796	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4797	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4798	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4799	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4800	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4801	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4802	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4803	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4804	if [[ $use_openmp = true ]]
	4805	then
[622]	4806	mrun_com=${mrun_com}" -O $threads_per_task"
[1]	4807	fi
[759]	4808	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
[397]	4809	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
[1]	4810	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4811	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4812	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4813	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4814	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4815	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[920]	4816	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
	4817	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
[759]	4818	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
[1]	4819	if [[ $do_remote = true ]]
	4820	then
	4821	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4822	fi
	4823
	4824
	4825	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4826	jobfile=jobfile.$RANDOM
	4827
	4828
	4829	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4830	echo "mkdir $TEMPDIR" >> $jobfile
	4831	echo "cd $TEMPDIR" >> $jobfile
	4832
	4833
	4834	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4835	if [[ $do_trace = true ]]
	4836	then
	4837	echo "set -x" >> $jobfile
	4838	else
	4839	echo "set +vx" >> $jobfile
	4840	fi
	4841
	4842
[191]	4843	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4844	# DATEI FUER DEN JOB
[693]	4845	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
[1]	4846	then
	4847
[191]	4848	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4849	# KOPIEREN
	4850	if [[ $restart_run != true ]]
	4851	then
	4852	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4853	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4854	fi
[1]	4855
[191]	4856	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[693]	4857	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
[193]	4858	echo "set -x" >> $jobfile
[693]	4859	if [[ $host = $localhost ]]
	4860	then
	4861	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4862	else
	4863	if [[ $host != ibmkisti ]]
	4864	then
	4865	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4866	else
	4867	# on KISTI's IBM firewall is only opened on interactive node
	4868	echo "localdir=\`pwd\`" >> $jobfile
	4869	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
	4870	fi
	4871	fi
[193]	4872	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4873
[193]	4874	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4875	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4876	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4877	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4878	echo "execute_mrun=true" >> $jobfile
	4879	echo " " >> $jobfile
	4880
[191]	4881	else
	4882
	4883	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4884	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4885	if [[ $do_compile = true ]]
	4886	then
	4887
	4888	source_catalog=SOURCES_FOR_RUN_$fname
	4889
	4890	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4891	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4892	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4893	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4894	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4895	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4896
	4897	for filename in $source_list
	4898	do
	4899	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4900	echo "cat > $filename << \"%END%\"" >> $jobfile
	4901	cat $source_catalog/$filename >> $jobfile
	4902	echo " " >> $jobfile
	4903	echo "%END%" >> $jobfile
	4904	echo " " >> $jobfile
	4905	done
	4906
[1]	4907	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4908	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4909	cat $source_catalog/Makefile >> $jobfile
[1]	4910	echo " " >> $jobfile
	4911	echo "%END%" >> $jobfile
	4912	echo " " >> $jobfile
	4913
[191]	4914	echo "cd - > /dev/null" >> $jobfile
[1]	4915
[191]	4916	fi
[1]	4917
	4918
[191]	4919	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4920	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4921	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4922	cat $config_file >> $jobfile
	4923	echo "%END%" >> $jobfile
	4924	echo " " >> $jobfile
[1]	4925
	4926
[191]	4927	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4928	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[693]	4929	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4930	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4931	echo "%END%" >> $jobfile
[191]	4932	echo "chmod u+x $mrun_script_name" >> $jobfile
	4933	echo "execute_mrun=true" >> $jobfile
	4934	echo " " >> $jobfile
[1]	4935
	4936	fi
	4937
[191]	4938
[1]	4939	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4940	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4941	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4942	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4943	if [[ $do_remote = true ]]
	4944	then
	4945	(( i = 0 ))
	4946	while (( i < iin ))
	4947	do
	4948	(( i = i + 1 ))
	4949	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4950	if [[ "${transin[$i]}" = job ]]
	4951	then
	4952	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4953	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4954	echo " " >> $jobfile
	4955	echo "%END%" >> $jobfile
	4956	else
[82]	4957	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4958	fi
	4959
	4960	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4961	echo "if [[ \$? = 1 ]]" >> $jobfile
	4962	echo "then" >> $jobfile
	4963	echo " echo \" \" " >> $jobfile
	4964	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4965	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4966	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4967	echo " execute_mrun=false" >> $jobfile
	4968	echo "fi" >> $jobfile
	4969	done
	4970	fi
	4971
	4972	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4973	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4974	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4975	echo "export LOCAL_PWD" >> $jobfile
	4976
	4977	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4978	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4979	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4980
[66]	4981	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4982	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4983	then
	4984	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4985	fi
[1]	4986
[693]	4987	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
[1]	4988	echo "set -x" >> $jobfile
[693]	4989	echo "queue=$queue" >> $jobfile
[1]	4990	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4991
	4992	echo 'ls -al; echo `pwd`' >> $jobfile
	4993	echo "cd \$HOME" >> $jobfile
	4994	echo "rm -rf $TEMPDIR" >> $jobfile
	4995
	4996
	4997
	4998
	4999	# JOB PER SUBJOB STARTEN
	5000	if [[ $silent = false ]]
	5001	then
	5002	printf "\n "
	5003	else
	5004	printf "\n\n"
	5005	fi
	5006
[352]	5007	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
[1]	5008	rm -rf $jobfile
	5009
	5010
	5011	fi # ENDE REMOTE-TEIL
	5012
	5013
	5014
	5015	# ENDE DER PROZEDUR

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