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source: palm/trunk/SCRIPTS/mrun @ 810

Last change on this file since 810 was 807, checked in by maronga, 13 years ago
new utility check_namelist_files implemented
Property svn:keywords set to `Id Rev`
File size: 186.3 KB

Rev	Line
[71]	1	#!/bin/ksh
[503]	2	# mrun - script for running PALM jobs
[169]	3	# $Id: mrun 807 2012-01-25 11:53:51Z maronga $
[1]	4
[503]	5	# Procedure for interactive/batch PALM runs (initial runs and automatic
	6	# restart runs)
[1]	7
[503]	8	# Last changes:
[1]	9	# 03/03/94 - Siggi - Entwicklungsbeginn
	10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
	11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
	12	# zelne Variable exportiert. Dies ist noetig, weil an-
	13	# sonsten irgendein Speicher ueberlaeuft und von mrun
	14	# aufgerufene Programme (z.B. stageout) mit Fehlern
	15	# abbrechen (too many arguments)
	16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
	17	# defaultmaessig im RRZN-Profile eingeschaltet
	18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
	19	# wegfallen
	20	# 25/04/00 - Siggi - Version 1.5
	21	# remote_addres und remote_user in return_addres bzw.
	22	# return_username umbenannt, return_username wird dem
	23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
	24	# Neue Variable remote_username, die beim interaktiven
	25	# mrun-Aufruf zwingend ueber die neue Option -u oder
	26	# in der Konfigurationsdatei angegeben werden muss.
	27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
	28	# Version 1.7
	29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
	30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
	31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
	32	# zu bestimmen; Praeprozessoroptionen haben nun alle
	33	# die Form -Dtext=text, weil auf IBM sonst text durch
	34	# die leere Zeichenkette ersetzt wird
	35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
	36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
	37	# (-D$OMP=OMP) in order to avoid problems with
	38	# OMP_NUM_THREADS
	39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
	40	# tar files, one for each node used
	41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
	42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
	43	# 17/01/05 - Siggi - job for data transfer to local machine now within
	44	# job class c1 (HLRN)
	45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
	46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
	47	# base filename and cycle number
	48	# 16/02/05 - Gerald - hababai validated
	49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
	50	# 29/03/05 - Marcus - berni*-en0 validated
	51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
	52	# 24/04/05 - Siggi - netcdf support on lcmuk
	53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
	54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
	55	# number) can now be used within interactive runs
	56	# 12/05/05 - Siggi - netcdf support on ibm
	57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
	58	# 18/05/05 - Siggi - netcdf support on nec
	59	# 24/05/05 - Siggi - netcdf support on ibms
	60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
	61	# to 30 seconds
	62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
	63	# PATH is temporarily set)
	64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
	65	# caused warnings in the job protocol
	66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
	67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
	68	# removed
	69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
	70	# realized by file attribute trpe
	71	# 28/10/05 - Siggi - if existing, the file extension is output in case
	72	# of missing input file - no job abort in case of
	73	# missing input files with file extensions
	74	# (preliminary solution)
	75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
	76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
	77	# 07/12/05 - Siggi - gallego and elephanta admitted
	78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
	79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
	80	# 20/01/06 - Siggi - cpp directive for ibmy
	81	# 09/02/06 - Siggi - ibmy admitted for batch mode
	82	# 13/04/06 - Siggi - ostria admitted
	83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
	84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
	85	# optimization of OpenMP runs (option stacksize is
	86	# necessary for large gridpoint numbers because
	87	# otherwise a segmentation fault occurs)
	88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
	89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
	90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
	91	# 20/09/06 - Marcus - add DVRP library on nech
	92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
	93	# on local NAMELIST file ENVPAR
	94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
	95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
	96	# 06/02/07 - Siggi - add DVRP library on lcmuk
	97	# 07/02/07 - Siggi - revision of source code handling, source code is
	98	# now expected in directory given by source_path and
	99	# not in the current working directory, source code
	100	# files provided in add_source_path are allways
	101	# compiled, source code to be compiled is allways
	102	# sampled in SOURCES_FOR_RUN_$fname which is a
	103	# subdirectory of the current working directory,
[5]	104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
[1]	105	# adapted for RIAM (neck)
[5]	106	# bugfix for cycle number of output file (extout)
	107	# all hpmuk-related code removed
[14]	108	# 14/02/07 - Siggi - dvrp support for neck added
[21]	109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
[26]	110	# mrun_path replaced by PALM_BIN,
	111	# all machines are calling interpret_config.x
[66]	112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
	113	# output
[69]	114	# 16/03/07 - Siggi - adjustments for lctit
[78]	115	# 29/03/07 - Siggi - global revision transfered to batch job by new
	116	# option -G
[82]	117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
	118	# + netcdf/dvrp-options are read from configuration
	119	# file, host identifier (local_host) is read from
	120	# config file, code related to ftp filetransfer
	121	# removed (incl. option -f)
[97]	122	# 19/06/07 - Siggi - time limit for cdata jobs increased
[102]	123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
	124	# if new option -Y (coupling) is given,
	125	# output of executables to aout_output removed,
	126	# messages are immediately written to stdout instead
[108]	127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
	128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
	129	# variables out to the nodes in coupled mode -disabled-
	130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
[109]	131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
	132	# environment variables out to the nodes in coupled mode
[118]	133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
	134	# suggestions
[122]	135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
	136	# argument -g group_number, admit all sla* node_usage
	137	# queues
[129]	138	# 30/10/07 - Marcus - further adjustments for queues on lctit
[149]	139	# 14/02/08 - Bjoern - link of restart files with long file name possible
	140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
	141	# true, mrun tries "ln -f" on local output and resorts
	142	# to "cp" or "cp -r" on error
[164]	143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
	144	# which allows the user to choose his own job catalog
	145	# by setting job_catalog in the configuration file
	146	# (default is ~/job_queue),
[172]	147	# workaround for mpiexec with -env option,
[164]	148	# adjustments for lcxt4 (Bergen Center for Computational
	149	# Science)
[183]	150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
	151	# true, mrun tries "ln -f" on local input and resorts
	152	# to "cp" or "cp -r" on error
[180]	153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
[179]	154	# 14/07/08 - Siggi - adjustments for lcsgih
[188]	155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
[204]	156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
[210]	157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
	158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
	159	# argument
[211]	160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
	161	# file
	162	# 11/11/08 - Siggi - rules for using user code files changed: user
	163	# code splitted into one file per subroutine,
	164	# user can provide his/her own makefile, only
	165	# default source-code filenames are allowed
[215]	166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
[221]	167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
	168	# with environment variable mpilib
[223]	169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
	170	# using environment variable totalview
[246]	171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
	172	# interactive runs
[253]	173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
[260]	174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
	175	# dvr streaming server is automatically started using
	176	# new variable dvr_server and a configuration file
	177	# .dvrserver.config,
[261]	178	# processing of dvr output files using new script
	179	# process_dvr_output implemented, in order to make
	180	# dvr application more user friendly
[265]	181	# 20/03/09 - Marcus - update of n1ge command for lctit
[291]	182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
	183	# to be followed by a coupled atmosphere-ocean run
[343]	184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
	185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
[352]	186	# 08/07/09 - Siggi - default value for email_notification is none,
	187	# option -e added to subjob
[359]	188	# 19/08/09 - Marcus - MPI debug option
[362]	189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
[367]	190	# 25/08/09 - BjornM - adpated for lck
[369]	191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
[372]	192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
[397]	193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
	194	# switches on archiving, archiving on SGI-ICE enabled
[416]	195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
	196	# adjustment for special1q
	197	# 18/12/09 - Carolin- modification of archiving (permq)
[440]	198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
[475]	199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
	200	# implemented
[493]	201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
	202	# file (modules)
[503]	203	# 02/03/10 - Siggi - for each block in the configuration file, separate
	204	# utility programs are used, combine_plot_fields is
	205	# directly called and must not be given by an output
	206	# command in the configuration file any more
[540]	207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
	208	# lcsgih/lcsgib is done using the names
	209	# hicegate0/bicegate0 instead of the IP addresses
[544]	210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
[555]	211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
[622]	212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
	213	# has now argument threads_per_task
	214	# adjustments for Kyushu Univ. (lcrte, ibmku)
[635]	215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
	216	# institute of technology (lctit)
[759]	217	# 23/12/10 - Micha - different number of processors in ocean and
	218	# atmosphere is now allowed
[678]	219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
	220	# usage
[696]	221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
[693]	222	# usage, totalview usage extended
[721]	223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
	224	# 03/04/11 - Micha - added lckordi
	225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
[738]	226	# 17/08/11 - Siggi - extensions for impi library
[759]	227	# 18/08/11 - Siggi - bugfix for local append of output files with suffix
	228	# (.nc)
[746]	229	# 18/08/11 - Marcus - support for Linux OS with German locale
[759]	230	# - properly report hosts on general Linux clusters
[755]	231	# 29/08/11 - BjornW - adapted for lcflow (ForWind cluster in Oldenburg)
[759]	232	# 29/08/11 - Carolin- initiating restart-run: adjustment of the path at
	233	# IMUK
	234	# 15/09/11 - Siggi - new option -w tp set the maximum number of parallel
	235	# io streams, option -T is obligatory from now on
[807]	236	# 25/01/12 - BjornM - a namelist file check prior to the model run has
	237	# been implemented (check_namelist_files).
	238	# New option -z can be used to skip the check
[437]	239
[1]	240
	241	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	242
	243	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	244	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	245	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	246
	247	AddFilenames=""
	248	additional_conditions=""
	249	add_source_path=""
	250	afname=""
	251	archive_save=true
	252	archive_system=none
[807]	253	check_namelist_files=true
[1]	254	compiler_name=""
	255	cond1=""
	256	cond2=""
	257	config_file=.mrun.config
[206]	258	coupled_dist=""
	259	coupled_mode="mpi1"
[1]	260	cpp_opts=""
[82]	261	cpp_options=""
[1]	262	cpumax=0
	263	cpurest=0
	264	delete_temporary_catalog=true
	265	do_batch=false
	266	do_compile=true
	267	do_remote=false
	268	do_stagein=true
	269	do_stageout=true
	270	do_trace=false
[352]	271	email_notification="none"
[1]	272	exclude=""
	273	executable=""
	274	execution_error=false
[67]	275	fimm=false
[1]	276	fname=test
	277	fromhost=""
[78]	278	global_revision=""
[122]	279	group_number=none
[1]	280	host=""
	281	host_file=""
	282	hp=""
	283	ignore_archive_error=false
	284	input_list=""
	285	interpreted_config_file=""
[164]	286	job_catalog="~/job_queue"
[1]	287	job_on_file=""
	288	keep_data_from_previous_run=false
[183]	289	link_local_input=false
[149]	290	link_local_output=false
[1]	291	localhost_realname=$(hostname)
	292	local_compile=false
[260]	293	local_dvrserver_running=.FALSE.
[1]	294	locat=normal
	295	mainprog=""
	296	makefile=""
[759]	297	max_par_io_str=""
[1]	298	mc=$0
	299	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	300	do
	301	mc=`echo $mc \| cut -f2- -d"/"`
	302	done
[493]	303	module_calls=""
[1]	304	mrun_script_name=$mc
[82]	305	netcdf_inc=""
	306	netcdf_lib=""
[1]	307	netcdf_support=false
	308	node_usage=default
	309	numprocs=""
[206]	310	numprocs_atmos=0
	311	numprocs_ocean=0
[1]	312	OOPT=""
	313	openmp=false
	314	output_list=""
	315	package_list=""
	316	punkte="..........................................................."
[807]	317	p3d_suffix=""
[1]	318	queue=none
	319	read_from_config=""
[5]	320	restart_run=false
[622]	321	if [[ `hostname` = rte10 ]]
[1]	322	then
[622]	323	return_addres=133.5.185.60
[693]	324	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
	325	elif [[ `hostname` = climate0 ]]
	326	then
	327	return_addres=165.132.26.68
	328	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
[622]	329	else
	330	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	331	fi
	332	return_password=""
	333	return_username=$LOGNAME
	334	remotecall=false
	335	remote_username=""
[102]	336	run_coupled_model=false
[1]	337	run_mode=""
	338	scirocco=false
[397]	339	store_on_archive_system=false
[1]	340	striche=" ----------------------------------------------------------------------------"
	341	silent=false
	342	source_list=""
	343	source_path=SOURCE
	344	tasks_per_node=""
	345	threads_per_task=1
	346	tmpcreate=false
	347	tmp_data_catalog=""
	348	transfer_problems=false
	349	usern=$LOGNAME
[377]	350	use_openmp=false
[1]	351	working_directory=`pwd`
	352	TOPT=""
	353	XOPT=""
	354	zeit=$( date \| cut -c 12-19 )
	355
	356	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	357	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	358
[66]	359	typeset -R30 calltime
[1]	360	typeset -L20 spalte1
	361	typeset -L40 spalte2
	362	typeset -L60 spalte3
	363	typeset -L35 string1=`date`
	364	typeset -L12 string2=$usern
	365	typeset -L12 string3=$localhost_realname
	366	typeset -L12 string4
	367	typeset -L12 string5
[201]	368	typeset -L30 version="MRUN 2.0 Rev$Rev: 807 $"
[1]	369
	370
	371
	372	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	373	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	374
	375	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	376	# EXPORTIERT WERDEN
	377	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	378	export group_number input_list memory numprocs output_list queue run_mode
[1]	379
	380
	381
	382	# FEHLERBEHANDLUNG
	383	# BEI EXIT:
[83]	384	trap 'rm -rf $working_directory/tmp_mrun
[69]	385	if [[ $locat != localhost ]]
[1]	386	then
[22]	387	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	388	# then
	389	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	390	#MRUN-calls on $localhost
	391	#
	392	#date and time user localhost remotehost termination mrun-command
	393	#--------------------------------------------------------------------------------------------------------------------
	394	#%STATEND%
	395	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	396	# fi
	397	#
	398	# # EINTRAG IN DIE STATISTIK-DATEI
	399	# string4=$host
	400	# string5=$locat
	401	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	402	# then
	403	# if [[ $do_batch = true ]]
	404	# then
	405	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	406	# else
	407	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	408	# fi
	409	# fi
[69]	410	echo " " > /dev/null
[1]	411	fi
	412
	413	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	414	then
	415
	416	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	417	(( i = 0 ))
	418	while (( i < iec ))
	419	do
	420	(( i = i + 1 ))
	421	printf "\n *** Execution of ERROR-command:\n"
	422	printf " >>> ${err_command[$i]}\n"
	423	eval ${err_command[$i]}
	424	done
	425	if [[ -n $interpreted_config_file ]] then
	426	rm -rf $interpreted_config_file
	427	fi
[71]	428	if [[ -n .mrun_environment ]] then
	429	rm -rf .mrun_environment
	430	fi
[1]	431	if [[ $tmpcreate = true ]]
	432	then
	433	printf "\n *** Contents of \"$TEMPDIR\":\n"
	434	ls -al; cd
	435	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	436	fi
[260]	437	if [[ "$dvrserver_id" != "" ]]
	438	then
	439	echo "+++ killing dvrserver_id=$dvrserver_id"
	440	kill $dvrserver_id
	441	fi
[1]	442	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	443	then
	444	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	445	fi
	446	printf "\n\n+++ MRUN killed \n\n"
	447	elif [[ $locat != control_c ]]
	448	then
	449	printf "\n\n --> all actions finished\n\n"
	450	printf " Bye, bye $usern !!\n\n"
	451	fi' exit
	452
	453
	454	# BEI TERMINAL-BREAK:
[83]	455	trap 'rm -rf $working_directory/tmp_mrun
[807]	456	rm -rf $working_directory/tmp_check_namelist_files
[69]	457	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	458	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	459	then
	460	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	461	fi
[260]	462	if [[ "$dvrserver_id" != "" ]]
	463	then
	464	echo "+++ killing dvrserver_id=$dvrserver_id"
	465	kill $dvrserver_id
	466	fi
[1]	467	printf "\n+++ MRUN killed by \"^C\" \n\n"
	468	locat=control_c
	469	exit
	470	' 2
	471
	472
[22]	473	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	474	# BEEN SET
	475	if [[ "$PALM_BIN" = "" ]]
	476	then
	477	printf "\n +++ environment variable PALM_BIN has not been set"
	478	printf "\n please set it to the directory where the PALM scripts are located"
	479	locat=palm_bin; exit
	480	fi
[180]	481	export PATH=$PALM_BIN:$PATH
[22]	482
	483
[1]	484
	485	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	486	# FUER FOLGEJOBS BENOETIGT WIRD
[807]	487	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:z option
[1]	488	do
	489	case $option in
	490	(a) afname=$OPTARG;;
[397]	491	(A) store_on_archive_system=true; mc="$mc -A";;
[1]	492	(b) do_batch=true; mc="$mc -b";;
	493	(B) delete_temporary_catalog=false; mc="$mc -B";;
	494	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	495	(C) restart_run=true; mc="$mc -C";;
[1]	496	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	497	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	498	(F) job_on_file="-D"; mc="$mc -F";;
[122]	499	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	500	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	501	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	502	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	503	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	504	(I) ignore_archive_error=true; mc="$mc -I";;
	505	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	506	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	507	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	508	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	509	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	510	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
[622]	511	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
[1]	512	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	513	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	514	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	515	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	516	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	517	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	518	(S) read_from_config=false; mc="$mc -S";;
	519	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
[759]	520	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
[1]	521	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	522	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	523	(v) silent=true; mc="$mc -v";;
[759]	524	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
[1]	525	(x) do_trace=true;set -x; mc="$mc -x";;
	526	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	527	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	528	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[807]	529	(z) check_namelist_files=false; mc="$mc -z";;
[1]	530	(\?) printf "\n +++ unknown option $OPTARG \n"
	531	printf "\n --> type \"$0 ?\" for available options \n"
	532	locat=parameter;exit;;
	533	esac
	534	done
	535
	536
	537	# EVTL. POSITIONSPARAMETER EINLESEN
	538	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	539	shift OPTIND-1
	540
	541
	542	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	543	if [[ "$1" = "?" ]]
	544	then
	545	(printf "\n *** mrun can be called as follows:\n"
[291]	546	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
[1]	547	printf "\n Description of available options:\n"
	548	printf "\n Option Description Default-Value"
	549	printf "\n -a base name of input files equiv. -d"
[400]	550	printf "\n -A archiving when using file-attribute fl"
[1]	551	printf "\n -b batch-job on local machine ---"
	552	printf "\n -B do not delete temporary directory at end ---"
	553	printf "\n -c configuration file .mrun.config"
	554	printf "\n -d base name of files attached to program test"
	555	printf "\n -D preprocessor(cpp)-directives \"\" "
	556	printf "\n -F create remote job file only ---"
	557	printf "\n -h execution host $localhost_realname"
	558	printf "\n -i INPUT control list \"\" "
	559	printf "\n -I archiving errors of previous batch-jobs"
	560	printf "\n will be ignored"
	561	printf "\n -k keep data from previous run"
	562	printf "\n -K additional conditions for controling"
	563	printf "\n usage of conditional code and"
	564	printf "\n env-variables in configuration file \"\" "
	565	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	566	printf "\n -M Makefile name Makefile"
	567	printf "\n -n node usage (shared/not_shared) depending on -h"
	568	printf "\n -o OUTPUT control list \"\" "
	569	printf "\n -O use OpenMP ---"
	570	printf "\n -p software package list \"\" "
	571	printf "\n -q queue \"$queue\" "
	572	printf "\n -r run control list (combines -i -o) \"\" "
	573	printf "\n -s filenames of routines to be compiled \"\" "
	574	printf "\n must end with .f, .f90, .F, or .c !"
	575	printf "\n use \"..\" for more than one file and wildcards"
	576	printf "\n -s TEST compiles all files with w-permit"
	577	printf "\n -S config file interpreted by shellscript ---"
	578	printf "\n -t allowed cpu-time in seconds (batch) 0"
	579	printf "\n -T tasks per node depending on -h"
	580	printf "\n -u username on remote machine \"\" "
	581	printf "\n -v no prompt for confirmation ---"
[759]	582	printf "\n -w maximum parallel io streams as given by -X"
[1]	583	printf "\n -x tracing of mrun for debug purposes ---"
	584	printf "\n -X # of processors (on parallel machines) 1"
[291]	585	printf "\n -y add appendix \"_O\" to all local output"
	586	printf "\n files (ocean precursor runs followed by"
	587	printf "\n coupled atmosphere-ocean runs) ---"
[206]	588	printf "\n -Y run coupled model, \"#1 #2\" with"
	589	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[1]	590	printf "\n "
	591	printf "\n Possible values of positional parameter <modus>:"
	592	printf "\n \"?\" - this outline \n\n") \| more
	593	exit
	594	elif [[ "$1" != "" ]]
	595	then
	596	printf "\n +++ positional parameter $1 unknown \n"
	597	locat=parameter; exit
	598	fi
	599
	600
	601
	602	# KURZE STARTMELDUNG
	603	printf "\n*** $version "
	604	printf "\n will be executed. Please wait ..."
	605
	606
[82]	607
	608	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	609	if [[ ! -f $config_file ]]
	610	then
	611	printf "\n\n +++ configuration file: "
	612	printf "\n $config_file"
	613	printf "\n does not exist"
	614	locat=connect; exit
	615	fi
	616
	617
	618	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	619	line=""
	620	grep "%host_identifier" $config_file > tmp_mrun
	621	while read line
	622	do
[206]	623	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	624	then
	625	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	626	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	627	if [[ $localhost_realname = $HOSTNAME ]]
[82]	628	then
	629	localhost=$host_identifier
	630	break
	631	fi
	632	fi
	633	done < tmp_mrun
	634
	635	if [[ "$localhost" = "" ]]
	636	then
	637	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	638	printf "\n for local host \"$localhost_realname\"."
	639	printf "\n Please add line"
	640	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	641	printf "\n to the configuration file."
	642	locat=localhost; exit
	643	fi
	644
	645
	646	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	647	case $localhost_realname in
[397]	648	(r1\|r2\|h01\|b01) archive_system=tivoli;;
[82]	649	(cs*) archive_system=ut;;
	650	(fimm.bccs.uib.no) fimm=true;;
	651	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	652	(scirocco) scirocco=true;;
	653	esac
	654
	655
	656
[1]	657	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	658	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	659	[[ "$afname" = "" ]] && afname=$fname
	660
	661
	662	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	663	if [[ "$run_mode" != "" ]]
	664	then
	665	input_list="$input_list $run_mode"
	666	output_list="$output_list $run_mode"
	667	fi
	668
	669
	670	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	671	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	672	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	673	# STARTET)
	674	if [[ "$fromhost" = "" ]]
	675	then
	676	fromhost=$localhost
	677	fi
	678
	679
	680	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
	681	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
	682	then
	683	source_list=TEST
	684	local_compile=true
	685	host=$localhost
	686	fi
	687
	688
	689	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	690	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	691	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	692	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	693	if [[ -n $host && "$host" != $localhost ]]
	694	then
	695	do_batch=true
	696	do_remote=true
	697	case $host in
[717]	698	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
[1]	699	(*) printf "\n"
[83]	700	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	701	printf "\n is not available"
[1]	702	locat=nqs; (( iec = 0 )); exit;;
	703	esac
	704	else
	705	host=$localhost
	706	fi
	707
	708
	709	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	710	if [[ -n $additional_conditions ]]
	711	then
[69]	712	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	713	cond1=`echo $additional_conditions \| cut -d" " -f1`
	714	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	715	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	716	if [[ -n $dummy ]]
	717	then
	718	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	719	locat=options; exit
	720	fi
[503]	721	block=_$cond1
	722	[[ -n $cond2 ]] && block=${block}_$cond2
[1]	723	fi
	724
	725
[206]	726	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	727	if [[ $run_coupled_model = true ]]
	728	then
	729
	730	if [[ -n $coupled_dist ]]
	731	then
	732
	733	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	734	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	735
	736	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	737	then
	738
	739	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	740	printf "\n PEs (total) : $numprocs"
	741	printf "\n PEs (atmosphere): $numprocs_atmos"
	742	printf "\n PEs (ocean) : $numprocs_ocean"
	743	locat=coupling; exit
	744
	745	fi
	746
	747	else
	748
	749	(( numprocs_ocean = $numprocs / 2 ))
	750	(( numprocs_atmos = $numprocs / 2 ))
	751
	752	fi
	753	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	754
	755	# GET coupled_mode FROM THE CONFIG FILE
	756	line=""
	757	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	758	while read line
	759	do
	760	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
	761	then
	762	coupled_mode="mpi2"
	763	fi
	764	done < tmp_mrun
	765
	766	fi
	767
	768
[1]	769	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	770	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	771	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	772	then
	773	if [[ $ignore_archive_error = false ]]
	774	then
	775	printf "\n +++ data archiving of previous run failed"
	776	printf "\n see directory \~/job_queue on remote machine"
	777	locat=archive; exit
	778	else
	779	printf "\n +++ warning: data archiving in a previous run failed"
	780	printf "\n MRUN continues, trying to get backup copy"
	781	fi
	782	fi
	783
	784
	785
	786	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	787	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	788	if [[ "$read_from_config" = false ]]
	789	then
	790
	791	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	792	while read zeile
	793	do
	794	[[ $silent = false ]] && printf "."
	795
	796
	797	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	798	# ERSETZEN
	799	eval zeile=\"$zeile\"
	800
	801
	802	# INTERPRETATION DER ZEILE
[21]	803	if [[ "$(echo $zeile)" = "" ]]
[1]	804	then
[21]	805	# LEERZEILE, KEINE AKTION
	806	continue
[1]	807
[21]	808	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	809	then
	810
[1]	811	# ZEILE IST KOMMENTARZEILE
	812	true
	813
	814	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	815	then
	816
	817	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	818	zeile=$(echo $zeile \| cut -c2-)
[69]	819	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	820	var=`echo $zeile \| cut -d" " -f1`
	821	value=`echo $zeile \| cut -d" " -s -f2`
	822	for_host=`echo $zeile \| cut -d" " -s -f3`
	823	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	824	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	825
	826	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	827	then
	828
	829	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	830	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	831	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	832
	833
	834	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	835	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	836	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	837	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	838	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	839	# KONFIGURATIONSDATEI
	840	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	841	then
	842	eval $var=\$value
	843
	844	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	845	if [[ $do_trace = true ]]
	846	then
	847	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	848	fi
	849	fi
	850
	851	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	852	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	853	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	854	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	855	if [[ $var = host ]]
	856	then
	857	if [[ -n $host && "$host" != $localhost ]]
	858	then
	859	do_batch=true
	860	do_remote=true
	861	case $host in
[717]	862	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
[83]	863	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	864	printf "\n is not available"
[1]	865	locat=nqs; exit;;
	866	esac
	867	else
	868	host=$localhost
	869	fi
	870	fi
	871
	872	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	873	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	874	# DEN PROGRAMMEN BENOETIGT WERDEN
	875	export $var
	876	fi
	877
	878
	879
	880
	881	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	882	then
	883
	884	# ZEILE DEFINIERT ERROR-KOMMANDO
	885	(( iec = iec + 1 ))
	886	zeile=$(echo $zeile \| cut -c4-)
	887	err_command[$iec]="$zeile"
	888
	889	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	890	then
	891
	892	# ZEILE DEFINIERT INPUT-KOMMANDO
	893	(( iic = iic + 1 ))
	894	zeile=$(echo $zeile \| cut -c4-)
	895	in_command[$iic]="$zeile"
	896
	897	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	898	then
	899
	900	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	901	(( ioc = ioc + 1 ))
	902	zeile=$(echo $zeile \| cut -c4-)
	903	out_command[$ioc]="$zeile"
	904
	905	else
	906
	907	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	908	# s2a: in/out - Feld
	909	# s2b: loc - Feld (optional)
	910	# s2c: tr/ar - Feld (optional)
[69]	911	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	912	s1=`echo $zeile \| cut -d" " -f1`
	913	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	914	s2a=$(echo $s2 \| cut -d":" -f1)
	915	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	916	then
	917	s2b=""
	918	s2c=""
	919	else
[69]	920	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	921	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	922	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	923	fi
[69]	924	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	925	s3=`echo $zeile \| cut -d" " -f3`
	926	s4=`echo $zeile \| cut -d" " -s -f4`
	927	s5=`echo $zeile \| cut -d" " -s -f5`
	928	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	929
	930
	931	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	932	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	933	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	934	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	935	# HANDEN SEIN MUSS (D.H. s2b = loc)
	936	IFSALT="$IFS"; IFS="$IFS:"
	937	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	938	then
	939	found=false
	940	for actual in $input_list
	941	do
	942	for formal in $s3
	943	do
	944	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	945	done
	946	done
	947	if [[ $found = true ]]
	948	then
	949	(( iin = iin + 1 ))
	950	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	951	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	952	extin[$iin]=$s6
	953	fi
	954	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	955	then
	956	found=false
	957	for actual in $output_list
	958	do
	959	for formal in $s3
	960	do
	961	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	962	done
	963	done
	964	if [[ $found = true ]]
	965	then
	966	(( iout = iout + 1 ))
	967	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	968	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	969	fi
	970	elif [[ "$s2a" != in && "$s2a" != out ]]
	971	then
	972	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	973	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	974	locat=connect; exit
	975	fi
	976	IFS="$IFSALT"
	977	fi
	978	done < $config_file
	979
	980	else
	981
	982
	983	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	984	[[ $silent = false ]] && printf "..."
	985	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	986	export interpreted_config_file=.icf.$RANDOM
	987
	988
[69]	989
	990	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	991	# VERFUEGUNG STELLEN
	992	cat > .mrun_environment << %%END%%
	993	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	994	config_file = '$config_file', do_remote = '$do_remote',
	995	do_trace = '$do_trace', host = '$host',
	996	input_list = '$input_list', icf = '$interpreted_config_file',
	997	localhost = '$localhost', output_list = '$output_list' /
	998
	999	%%END%%
	1000
	1001	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	1002	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	1003	mrun_memory=$memory
[127]	1004	mrun_group_number=$group_number
[69]	1005	mrun_cpumax=$cpumax
	1006	mrun_numprocs=$numprocs
	1007
[251]	1008	if [[ $localhost_realname = "sx-fep" ]]
[66]	1009	then
[251]	1010	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	1011	else
[503]	1012
	1013	if [[ "$host" != $localhost ]]
	1014	then
	1015
	1016	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
	1017	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
	1018	if [[ $? != 0 ]]
	1019	then
	1020	printf "\n\n +++ no interpret_config found"
	1021	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
	1022	locat=interpret_config; exit
	1023	fi
	1024	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
	1025	$interpret_config_executable
	1026
	1027	else
	1028
	1029	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
	1030	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
	1031	then
	1032	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
	1033	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
	1034	locat=interpret_config; exit
	1035	else
	1036	interpret_config${block}.x
	1037	fi
	1038
	1039	fi
[66]	1040	fi
[71]	1041	rm .mrun_environment
[1]	1042
[71]	1043
[1]	1044	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	1045	chmod u+x $interpreted_config_file
	1046	export PATH=$PATH:.
	1047	. $interpreted_config_file
[71]	1048	rm $interpreted_config_file
[1]	1049
[71]	1050
[69]	1051	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[759]	1052	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	1053	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[759]	1054	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	1055	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
	1056	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
	1057	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
[69]	1058
[1]	1059	fi
	1060
	1061
	1062	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	1063	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	1064	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	1065	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	1066	if [[ "$SOURCES_COMPLETE" = "" ]]
	1067	then
	1068
	1069	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	1070	# VEREINBART WURDE
	1071	source_path=""
	1072	line=""
	1073	grep "%source_path" $config_file > tmp_mrun
	1074	while read line
	1075	do
	1076	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1077	then
	1078	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	1079	then
	1080	global_source_path=`echo $line \| cut -d" " -f2`
	1081	fi
	1082	fi
	1083	done < tmp_mrun
	1084
	1085	line=""
	1086	found=false
	1087	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	1088	while read line
	1089	do
	1090	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1091	then
	1092	if [[ $found = true ]]
	1093	then
	1094	printf "\n\n +++ more than one source path found in configuration file"
	1095	printf "\n for local host \"$localhost\" "
	1096	locat=source_path; exit
	1097	fi
	1098	source_path=`echo $line \| cut -d" " -f2`
	1099	found=true
	1100	fi
	1101	done < tmp_mrun
	1102	rm tmp_mrun
	1103
	1104	if [[ "$source_path" = "" ]]
	1105	then
	1106	if [[ "$global_source_path" != "" ]]
	1107	then
	1108	source_path=$global_source_path
	1109	else
	1110	printf "\n\n +++ no source path found in configuration file"
	1111	printf "\n for local host \"$localhost\" "
	1112	locat=source_path; exit
	1113	fi
	1114	fi
	1115	eval source_path=$source_path
	1116
	1117	if [[ ! -d $source_path ]]
	1118	then
	1119	printf "\n\n +++ source path \"$source_path\" on local host"
	1120	printf "\n \"$localhost\" does not exist"
	1121	locat=source_path; exit
	1122	fi
	1123
	1124	fi
	1125
	1126
[78]	1127	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	1128	# DURCH OPTION -G MITGETEILT)
[693]	1129	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
[78]	1130	then
	1131	global_revision=`svnversion $source_path 2>/dev/null`
	1132	global_revision="Rev: $global_revision"
	1133	fi
[1]	1134
[78]	1135
[1]	1136	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1137	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1138	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1139	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1140	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1141	if [[ -n $host && "$host" != $localhost ]]
	1142	then
	1143	do_batch=true
	1144	do_remote=true
	1145	case $host in
[717]	1146	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
[1]	1147	(*) printf "\n"
[83]	1148	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1149	printf "\n is not available"
[1]	1150	locat=nqs; (( iec = 0 )); exit;;
	1151	esac
	1152	else
	1153	host=$localhost
	1154	fi
	1155
	1156
	1157	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1158	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1159	then
	1160
	1161	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1162	if [[ ! -n $numprocs ]]
	1163	then
	1164	printf "\n"
	1165	printf "\n +++ option \"-K parallel\" requires additional specification"
	1166	printf "\n of the number of processors to be used by"
	1167	printf "\n mrun-option \"-X\" or by environment-variable"
	1168	printf "\n \"numprocs\" in the configuration file"
	1169	locat=numprocs; (( iec = 0 )); exit
	1170	fi
	1171
	1172	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1173	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1174	# GESAMTPROZESSORANZAHL IST
[759]	1175	if [[ "$tasks_per_node" = "" ]]
[1]	1176	then
[759]	1177	printf "\n"
	1178	printf "\n +++ option \"-T\" (tasks per node) is missing"
	1179	printf "\n set -T option or define tasks_per_node in the config file"
	1180	locat=tasks_per_node; (( iec = 0 )); exit
	1181	fi
	1182	(( ival = $tasks_per_node ))
	1183	(( pes = numprocs ))
[1]	1184	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1185	# then
	1186	# (( pes = pes - 1 ))
	1187	# fi
[759]	1188	(( ii = pes / ival ))
	1189	if (( pes - ii * ival > 0 ))
	1190	then
	1191	printf "\n"
	1192	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1193	printf "\n divisor of the total number of processors (option \"-X\")"
	1194	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1195	locat=tasks_per_node; (( iec = 0 )); exit
[1]	1196	fi
	1197
[759]	1198
[1]	1199	# IBMY HAT NUR EINEN KNOTEN
	1200	if [[ $host = ibmy ]]
	1201	then
	1202	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1203	then
	1204	printf "\n"
	1205	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1206	printf "\n total number of processors (option \"-X\")"
	1207	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1208	locat=tasks_per_node; (( iec = 0 )); exit
	1209	fi
	1210	fi
	1211
[377]	1212
	1213	# SETTINGS FOR SUBJOB-COMMAND
[622]	1214	TOPT="-T $tasks_per_node"
[1]	1215	OOPT="-O $threads_per_task"
	1216
	1217	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1218	if [[ "$tasks_per_node" != "" ]]
	1219	then
	1220	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1221	fi
	1222
	1223	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1224	# SETZEN
	1225	if [[ $node_usage = default ]]
	1226	then
	1227	if [[ $host = ibms ]]
	1228	then
	1229	node_usage=shared
[181]	1230	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1231	then
	1232	node_usage=singlejob
[1]	1233	else
	1234	node_usage=not_shared
	1235	fi
	1236	fi
[181]	1237
[635]	1238	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
[1]	1239	then
	1240	printf "\n"
	1241	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1242	printf "\n \"shared\" or \"not_shared\""
	1243	locat=tasks_per_node; (( iec = 0 )); exit
	1244	fi
	1245
	1246	fi
	1247
	1248	# PRUEFEN, OB HOSTFILE EXISTIERT
	1249	if [[ -n $hostfile ]]
	1250	then
	1251	if [[ ! -f $hostfile ]]
	1252	then
	1253	printf "\n"
	1254	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1255	locat=hostfile; exit
	1256	fi
	1257	fi
	1258
	1259	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1260	if [[ $host = ibmy && $do_remote = false ]]
	1261	then
	1262	if [[ ! -f $HOME/.rhosts ]]
	1263	then
	1264	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1265	printf "\n\n *** file:"
	1266	printf "\n $HOME/.rhosts"
	1267	printf "\n was created\n"
	1268	fi
	1269	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1270	then
	1271	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1272	printf "\n\n *** file:"
	1273	printf "\n $HOME/.rhosts"
	1274	printf "\n was extended by the name of the current host\n"
	1275	fi
	1276	fi
	1277
	1278
[759]	1279	# Set default value for the maximum number of parallel io streams
	1280	if [[ "$maximum_parallel_io_streams" = "" ]]
	1281	then
	1282	maximum_parallel_io_streams=$numprocs
	1283	fi
[1]	1284
[759]	1285
[1]	1286	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1287	if [[ $queue = none ]]
	1288	then
	1289	case $host in
[312]	1290	(ibmh) queue=no_class;;
[693]	1291	(ibmkisti) queue=class.32plus;;
[1]	1292	(ibmy) queue=parallel;;
[440]	1293	(lckyoto) queue=ph;;
[191]	1294	(lcsgib) queue=bigq;;
	1295	(lcsgih) queue=bigq;;
[635]	1296	(lctit) queue=S;;
[1]	1297	(nech) queue=none;;
[253]	1298	(necriam) queue=SP;;
[1]	1299	(unics) queue=unics;;
	1300	esac
	1301	fi
	1302
	1303
	1304	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1305	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1306	# ERMITTELN
	1307	(( i = 0 ))
	1308	while (( i < iin ))
	1309	do
	1310	(( i = i + 1 ))
	1311	(( maxcycle = 0 ))
	1312
	1313	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1314	if [[ "${actionin[$i]}" = di ]]
	1315	then
	1316	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1317	# REM-MASCHINE AUSWERTEN
	1318	eval filename=${pathin[$i]}/${endin[$i]}
	1319	else
	1320	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1321	# REM-MASCHINE AUSWERTEN
	1322	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1323	fi
	1324
	1325	# PRUEFEN AUF VORHANDENSEIN
	1326	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
[746]	1327	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
[1]	1328	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1329	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1330	then
	1331	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1332	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1333	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1334	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1335	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1336	if [[ "${transin[$i]}" != "locopt" ]]
	1337	then
	1338	printf "\n\n +++ INPUT-file: "
	1339	if [[ "${extin[$i]}" = "" ]]
	1340	then
	1341	printf "\n $filename"
	1342	else
	1343	printf "\n $filename.${extin[$i]}"
	1344	fi
	1345	printf "\n does not exist\n"
	1346	locat=input; exit
	1347	else
	1348	transin[$i]="unavailable"
	1349	fi
	1350	else
	1351
	1352	# ZYKLUSNUMMER FESTSTELLEN
	1353	ls -1 -d $filename > filelist 2>/dev/null
	1354	ls -1 -d $filename.* >> filelist 2>/dev/null
	1355	while read zeile
	1356	do
	1357	cycle=$(print $zeile \| cut -f2 -d".")
	1358	if [[ "$cycle" = "$zeile" ]]
	1359	then
	1360	(( icycle = 0 ))
	1361	elif [[ "$cycle" = "${extin[$i]}" ]]
	1362	then
	1363	(( icycle = 0 ))
	1364	else
	1365	(( icycle = $cycle ))
	1366	fi
	1367	if (( icycle > maxcycle ))
	1368	then
	1369	(( maxcycle = icycle ))
	1370	file_to_be_used=$zeile
	1371	fi
	1372	done <filelist
	1373	rm filelist
	1374
	1375	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1376	if (( maxcycle > 0 ))
	1377	then
	1378	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1379	then
	1380	filename=${filename}.$maxcycle.${extin[$i]}
	1381	else
	1382	filename=${filename}.$maxcycle
	1383	fi
	1384	else
	1385	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1386	then
	1387	filename=${filename}.${extin[$i]}
	1388	fi
	1389	fi
	1390
	1391	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1392	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1393	absnamein[$i]=$filename
	1394	if (( maxcycle > 0 ))
	1395	then
	1396	if [[ "${actionin[$i]}" = di ]]
	1397	then
	1398	frelin[$i]=${endin[$i]}.$maxcycle
	1399	else
	1400	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1401	fi
	1402	else
	1403	if [[ "${actionin[$i]}" = di ]]
	1404	then
	1405	frelin[$i]=${endin[$i]}
	1406	else
	1407	frelin[$i]=${afname}${endin[$i]}
	1408	fi
	1409	fi
	1410
	1411	fi
	1412	done
	1413
	1414
	1415	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1416	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1417	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1418	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1419	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1420	(( i = 0 ))
	1421	while (( i < iout ))
	1422	do
	1423	(( i = i + 1 ))
	1424	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1425	then
[260]	1426	if [[ "${actionout[$i]}" = tr ]]
[1]	1427	then
	1428	actionout[$i]=""
[260]	1429	elif [[ "${actionout[$i]}" = trpe ]]
	1430	then
	1431	actionout[$i]=pe
[1]	1432	elif [[ "${actionout[$i]}" = tra ]]
	1433	then
	1434	actionout[$i]=a
	1435	fi
	1436	(( maxcycle = 0 ))
	1437	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1438	eval catalogname=${pathout[$i]}
	1439	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
[746]	1440	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
[1]	1441	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1442	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1443	then
	1444
	1445	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1446	if cat /dev/null > $filename
	1447	then
	1448	rm $filename
	1449	else
	1450
	1451	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1452	if [[ ! -d $catalogname ]]
	1453	then
	1454	if mkdir -p $catalogname
	1455	then
	1456	printf "\n\n *** directory:"
	1457	printf "\n $catalogname"
	1458	printf "\n was created\n"
	1459	else
	1460	printf "\n\n +++ OUTPUT-file:"
	1461	printf "\n $filename"
	1462	printf "\n cannot be created, because directory does not exist"
	1463	printf "\n and cannot be created either"
	1464	printf "\n"
	1465	locat=output ; exit
	1466	fi 2>/dev/null
	1467	else
	1468	printf "\n\n +++ OUTPUT-file:"
	1469	printf "\n $filename"
	1470	printf "\n cannot be created, although directory exists"
	1471	printf "\n"
	1472	locat=output ; exit
	1473	fi
	1474	fi 2>/dev/null
	1475	else
	1476
	1477	# ZYKLUSNUMMER FESTSTELLEN
	1478	ls -1 -d $filename > filelist 2>/dev/null
	1479	ls -1 -d $filename.* >> filelist 2>/dev/null
	1480	while read zeile
	1481	do
	1482	cycle=$(print $zeile \| cut -f2 -d".")
	1483	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1484	then
	1485	(( icycle = 1 ))
	1486	else
	1487	(( icycle = $cycle + 1 ))
	1488	fi
	1489	if (( icycle > maxcycle ))
	1490	then
	1491	(( maxcycle = icycle ))
	1492	fi
	1493	done <filelist
	1494	rm filelist
	1495	fi
	1496
	1497	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1498	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1499	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1500	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1501	if [[ "${actionout[$i]}" != a ]]
	1502	then
	1503	if (( maxcycle > 0 ))
	1504	then
	1505	filename=${filename}.$maxcycle
	1506	if cat /dev/null > $filename
	1507	then
	1508	rm $filename
	1509	else
	1510	printf "\n +++ OUTPUT-file:"
	1511	printf "\n $filename"
	1512	printf "\n cannot be created"
	1513	locat=output ; exit
	1514	fi
	1515	fi
	1516	else
	1517	(( maxcycle = maxcycle - 1 ))
	1518	if (( maxcycle > 0 ))
	1519	then
	1520	filename=${filename}.$maxcycle
	1521	fi
	1522	fi
	1523
	1524	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1525	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1526	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1527	pathout[$i]=$filename
	1528	if (( maxcycle > 0 ))
	1529	then
	1530	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1531	else
	1532	frelout[$i]=${fname}${endout[$i]}
	1533	fi
	1534
	1535	fi
	1536	done
	1537
	1538
[260]	1539	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1540	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1541	then
[260]	1542	if [[ "$dvr_inc" = "" ]]
[83]	1543	then
[260]	1544	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1545	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1546	locat=dvr; exit
[83]	1547	fi
[260]	1548	if [[ "$dvr_lib" = "" ]]
[83]	1549	then
[260]	1550	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1551	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1552	locat=dvr; exit
[83]	1553	fi
	1554	fi
	1555
	1556
[1]	1557	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1558	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1559	# UEBERSETZT ZU WERDEN)
	1560	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1561	then
	1562	printf "\n +++ neither main program nor executable defined"
	1563	locat=source; exit
	1564	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1565	then
	1566	printf "\n +++ main program as well as executable defined"
	1567	locat=source; exit
	1568	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1569	then
	1570	do_compile=false
	1571	fi
	1572
	1573
[191]	1574	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1575	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1576	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1577	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1578	then
	1579	rm -rf SOURCES_FOR_RUN_$fname
	1580	mkdir SOURCES_FOR_RUN_$fname
	1581	fi
	1582
	1583
[1]	1584	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1585	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1586	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1587	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1588	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1589	then
	1590
[5]	1591	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
	1592	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
[1]	1593
	1594
	1595	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
	1596	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
	1597	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
	1598	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
	1599	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
	1600	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
	1601	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
	1602	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
	1603	# GESAMMELT
[5]	1604	if [[ "$source_list" = WRITE_PERMIT ]]
[1]	1605	then
	1606
	1607	source_list=""
	1608	cd $source_path
	1609
	1610
	1611	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
	1612	Names=$(ls -1 *.f90 2>&1)
	1613	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
	1614	Names=$(ls -1 *.F90 2>&1)
	1615	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
	1616	Names=$(ls -1 *.F 2>&1)
	1617	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
	1618	Names=$(ls -1 *.f 2>&1)
	1619	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
	1620	Names=$(ls -1 *.c 2>&1)
	1621	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
	1622
	1623
	1624	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
	1625	for dateiname in $Filenames
	1626	do
	1627	if [[ -w $dateiname ]]
	1628	then
	1629	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
	1630	then
	1631	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1632	source_list=$source_list"$dateiname "
	1633	fi
	1634	fi
	1635	done
	1636
	1637	cd - > /dev/null
	1638
	1639
[5]	1640	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
	1641	then
	1642
	1643	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1644	source_list=""
	1645	cd $source_path
	1646
	1647
	1648	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1649	if [[ ! -d .svn ]]
	1650	then
	1651	printf "\n\n +++ source directory"
	1652	printf "\n \"$source_path\" "
	1653	printf "\n is not under control of \"subversion\"."
[306]	1654	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1655	fi
	1656
	1657
	1658	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1659	Filenames=""
[69]	1660	svn status > tmp_mrun
	1661	while read line
[5]	1662	do
	1663	firstc=`echo $line \| cut -c1`
	1664	if [[ $firstc = M \|\| $firstc = "?" ]]
	1665	then
	1666	Name=`echo "$line" \| cut -c8-`
	1667	extension=`echo $Name \| cut -d. -f2`
	1668	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1669	then
	1670	Filenames="$Filenames "$Name
	1671	fi
	1672	fi
[69]	1673	done < tmp_mrun
[5]	1674
	1675
	1676	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1677	for dateiname in $Filenames
	1678	do
	1679	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1680	source_list=$source_list"$dateiname "
	1681	done
	1682
	1683	cd - > /dev/null
	1684
	1685
[1]	1686	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1687	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1688	# VORHANDEN
[5]	1689	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1690	then
	1691
	1692	cd $source_path
	1693
	1694	for filename in $source_list
	1695	do
	1696
	1697	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1698	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1699	then
	1700	printf "\n +++ source code file: $filename"
	1701	printf "\n must not contain (\"/\") "
	1702	locat=source; exit
	1703	fi
	1704
	1705	if [[ ! -f $filename ]]
	1706	then
	1707	printf "\n +++ source code file: $filename"
	1708	printf "\n does not exist"
	1709	locat=source; exit
	1710	else
	1711	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1712	fi
	1713
	1714	done
	1715
	1716	cd - > /dev/null
	1717
	1718	fi
	1719
	1720
	1721	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1722	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1723	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1724	if [[ $restart_run != true ]]
[1]	1725	then
	1726
	1727	if [[ ! -f "$source_path/$mainprog" ]]
	1728	then
	1729	printf "\n\n +++ main program: $mainprog"
	1730	printf "\n does not exist in source directory"
	1731	printf "\n \"$source_path\"\n"
	1732	locat=source; exit
	1733	else
	1734	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1735	then
	1736	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1737	source_list=${mainprog}" $source_list"
	1738	fi
	1739	fi
	1740	fi
	1741
	1742
[211]	1743	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1744	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1745	if [[ "$restart_run" != true ]]
	1746	then
	1747	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1748	if [[ ! -f $makefile ]]
	1749	then
	1750	printf "\n +++ file \"$makefile\" does not exist"
	1751	locat=make; exit
	1752	else
	1753	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1754	fi
	1755	fi
	1756
	1757
[1]	1758	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1759	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1760	then
	1761
	1762	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1763	if [[ ! -d $add_source_path ]]
	1764	then
	1765	printf "\n\n +++ WARNING: additional source code directory"
	1766	printf "\n \"$add_source_path\" "
	1767	printf "\n does not exist or is not a directory."
	1768	printf "\n No source code will be used from this directory!\n"
	1769	add_source_path=""
	1770	sleep 3
	1771	else
	1772
	1773	cd $add_source_path
[211]	1774	found=false
[1]	1775
	1776	Names=$(ls -1 *.f90 2>&1)
	1777	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1778	Names=$(ls -1 *.F90 2>&1)
	1779	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1780	Names=$(ls -1 *.F 2>&1)
	1781	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1782	Names=$(ls -1 *.f 2>&1)
	1783	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1784	Names=$(ls -1 *.c 2>&1)
	1785	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1786
	1787	cd - > /dev/null
	1788	cd SOURCES_FOR_RUN_$fname
	1789
[211]	1790	# COPY MAKEFILE IF EXISTING
	1791	if [[ -f $add_source_path/Makefile ]]
	1792	then
	1793	printf "\n\n *** user Makefile from directory"
	1794	printf "\n \"$add_source_path\" is used \n"
	1795	sleep 1
	1796	cp $add_source_path/Makefile .
	1797	fi
	1798
[1]	1799	for dateiname in $AddFilenames
	1800	do
	1801	if [[ -f $dateiname ]]
	1802	then
	1803	printf "\n +++ source code file \"$dateiname\" found in additional"
	1804	printf "\n source code directory \"$add_source_path\" "
[211]	1805	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1806	printf "\n from directory \"$source_path\"."
[1]	1807	locat=source; exit
	1808	fi
	1809
	1810	cp $add_source_path/$dateiname .
	1811	source_list="$source_list $dateiname"
	1812
[211]	1813	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1814	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1815	then
	1816	printf "\n\n +++ user file \"$dateiname\" "
	1817	printf "\n is not listed in Makefile \n"
	1818	locat=source; exit
	1819	else
	1820
[1]	1821	# Default User-Interface von der Liste entfernen, falls Datei
	1822	# ein User-Interface enthaelt
[211]	1823	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1824	# then
	1825	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1826	# then
	1827	# rm -rf user_interface.f90
	1828	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1829	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1830	# printf "\n since a user-interface is found in file"
	1831	# printf "\n \"$add_source_path/$dateiname\" \n"
	1832	# sleep 3
	1833	# else
	1834	if [[ $found = false ]]
[1]	1835	then
[211]	1836	found=true
	1837	printf "\n\n *** following user file(s) added to the"
	1838	printf " files to be translated:\n "
[1]	1839	fi
[211]	1840	printf "$dateiname "
	1841	sleep 0.5
[1]	1842	fi
	1843	done
[211]	1844	[[ $found = true ]] && printf "\n"
[1]	1845	cd - > /dev/null
	1846	fi
	1847	fi
	1848
	1849
	1850	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1851	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1852	if [[ $restart_run != true && -n $package_list ]]
[1]	1853	then
	1854
	1855	cd $source_path
	1856
	1857	for package in $package_list
	1858	do
	1859
	1860	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1861
	1862	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1863	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1864	# LIEFERT
	1865	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1866
	1867
	1868	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1869	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1870	for source_list_name in $package_source_list
	1871	do
	1872	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1873	then
	1874
	1875	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1876	ending=`echo $source_list_name \| cut -f2 -d.`
	1877	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1878	then
	1879	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1880	source_list="$source_list $source_list_name"
	1881	fi
	1882	fi
	1883	done
	1884	done
	1885
	1886	cd - > /dev/null
	1887	fi
	1888
	1889
	1890	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1891	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1892	# if [[ "$restart_run" != true ]]
	1893	# then
	1894	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1895	# if [[ ! -f $makefile ]]
	1896	# then
	1897	# printf "\n +++ file \"$makefile\" does not exist"
	1898	# locat=make; exit
	1899	# else
	1900	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1901	# fi
	1902	# fi
[1]	1903
	1904	fi # do_compile=true
	1905
	1906
	1907	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1908	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1909	if [[ $do_compile = true ]]
	1910	then
	1911
	1912	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1913	# ZUSAMMENSETZEN
[83]	1914	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1915	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1916	then
[82]	1917	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1918	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1919	then
[82]	1920	cpp_options="$cpp_options -D__nec"
	1921	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1922	then
	1923	cpp_options="$cpp_options -D__lc"
[1]	1924	else
[82]	1925	cpp_options="$cpp_options -D__$localhost"
[1]	1926	fi
[83]	1927
	1928	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1929	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1930	then
[82]	1931	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1932	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1933	else
[82]	1934	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1935	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1936	fi
[83]	1937
	1938	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1939	if [[ -n $package_list ]]
	1940	then
	1941	for package in $package_list
	1942	do
	1943	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1944	then
	1945	if [[ $package != "dvrp_graphics+1PE" ]]
	1946	then
[82]	1947	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1948	else
[82]	1949	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1950	export use_seperate_pe_for_dvrp_output=true
	1951	fi
	1952	else
	1953	if [[ $package != "dvrp_graphics+1PE" ]]
	1954	then
[82]	1955	cpp_options="$cpp_options -D__$package"
[1]	1956	else
[82]	1957	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1958	export use_seperate_pe_for_dvrp_output=true
	1959	fi
	1960	fi
	1961	done
	1962	fi
[83]	1963
	1964	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1965	if [[ -n $cpp_opts ]]
	1966	then
	1967	for popts in $cpp_opts
	1968	do
[82]	1969	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1970	then
	1971	cpp_options="${cpp_options},-D__$popts=__$popts"
	1972	else
	1973	cpp_options="$cpp_options -D__$popts"
	1974	fi
[1]	1975	done
	1976	fi
	1977
	1978	else
	1979
	1980
	1981	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1982	if [[ $do_remote = false ]]
	1983	then
	1984	if [[ ! -f $executable ]]
	1985	then
	1986	printf "\n +++ executable file: $executable"
	1987	printf "\n does not exist"
	1988	locat=executable; exit
	1989	fi
	1990	fi
	1991	fi
	1992
	1993
	1994	# JOBMODUS FESTSTELLEN
[635]	1995	if [[ "$ENVIRONMENT" = BATCH ]]
[1]	1996	then
	1997	jobmo=BATCH
	1998	else
	1999	jobmo=INTERACTIVE
	2000	fi
	2001
	2002
[635]	2003	# no interactive runs on lctit
	2004	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
	2005	then
	2006	printf "\n +++ no interactive runs allowed on host \"$host\" "
	2007	printf "\n please submit batch job using mrun option \"-b\" \n"
	2008	locat=normal; exit
	2009	fi
	2010
	2011
[1]	2012	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	2013	# DURCH BENUTZER ANDERWEITIG VEREINBART
	2014	if [[ "$compiler_name" = "" ]]
	2015	then
[82]	2016
[220]	2017	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	2018	locat=compiler_name; exit
	2019
[1]	2020	fi
	2021
	2022
[251]	2023	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	2024	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	2025
	2026
	2027
	2028	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	2029	kennung=$RANDOM
	2030	if [[ "$tmp_user_catalog" = "" ]]
	2031	then
[312]	2032	if [[ $localhost = ibmh ]]
[1]	2033	then
[312]	2034	tmp_user_catalog=$SCRATCH
[1]	2035	elif [[ $localhost = nech ]]
	2036	then
	2037	tmp_user_catalog=$WRKSHR
	2038	else
	2039	tmp_user_catalog=/tmp
	2040	fi
	2041	fi
	2042	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	2043
	2044
	2045	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	2046	# BESTIMMEN
	2047	if [[ "$tmp_data_catalog" = "" ]]
	2048	then
[622]	2049	if [[ $localhost = nech ]]
[1]	2050	then
	2051	tmp_data_catalog=$WRKSHR/mrun_restart_data
	2052	else
	2053	tmp_data_catalog=/tmp/mrun_restart_data
	2054	fi
	2055	fi
	2056
	2057
	2058	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	2059	# ERSETZEN
	2060	if [[ $do_remote = false && $do_compile = true ]]
	2061	then
	2062	eval fopts=\"$fopts\"
	2063	eval lopts=\"$lopts\"
	2064	fi
	2065
	2066
	2067
	2068	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	2069	fopts="$fopts $netcdf_inc $dvr_inc"
	2070	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	2071	ROPTS="$ropts"
[717]	2072	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
[1]	2073	then
	2074	XOPT="-X $numprocs"
	2075	fi
	2076
	2077
	2078
	2079	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	2080	# GRAMM BENOETIGT
	2081	done=false
	2082	while [[ $done = false ]]
	2083	do
	2084	cputime=$cpumax
	2085	if (( $cputime == 0 ))
	2086	then
[246]	2087	if [[ $do_batch = true ]]
	2088	then
	2089	printf "\n +++ cpu-time is undefined"
	2090	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	2091	printf "\n >>> "
	2092	read cputime 1>/dev/null 2>&1
	2093	else
	2094	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	2095	fi
[1]	2096	else
	2097	done=true
	2098	fi
	2099	cpumax=$cputime
	2100	done
	2101
	2102	(( minuten = cputime / 60 ))
	2103	(( sekunden = cputime - minuten * 60 ))
	2104
	2105
	2106	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	2107	if [[ $do_batch = true ]]
	2108	then
	2109	done=false
	2110	while [[ $done = false ]]
	2111	do
	2112	if (( memory == 0 ))
	2113	then
	2114	printf "\n +++ memory demand is undefined"
	2115	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	2116	printf "\n >>> "
	2117	read memory 1>/dev/null 2>&1
	2118	else
	2119	done=true
	2120	fi
	2121	done
	2122	fi
	2123
	2124
	2125	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	2126	if [[ $do_remote = true && -z $remote_username ]]
	2127	then
	2128	while [[ -z $remote_username ]]
	2129	do
	2130	printf "\n +++ username on remote host \"$host\" is undefined"
	2131	printf "\n >>> Please type username:"
	2132	printf "\n >>> "
	2133	read remote_username
	2134	done
	2135	mc="$mc -u$remote_username"
	2136	fi
	2137
[221]	2138
[493]	2139	# set module load command and export for subjob
	2140	if [[ "$modules" != "" ]]
	2141	then
[678]	2142	if [[ $host = lctit ]]
	2143	then
	2144	export module_calls=". $modules"
	2145	else
	2146	export module_calls="module load ${modules};"
	2147	fi
[493]	2148	fi
	2149
[683]	2150	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
[562]	2151	if [[ $host = lcsgib \|\| $host = lcsgih ]]
[555]	2152	then
	2153	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
	2154	then
[562]	2155	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
[555]	2156	fi
[721]	2157	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
	2158	# then
	2159	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
	2160	# echo "*** module_calls = $module_calls"
	2161	# fi
[555]	2162	fi
[493]	2163
[555]	2164
[221]	2165	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2166	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2167	then
[493]	2168	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
	2169	then
	2170	mpilib=mpt
	2171	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
	2172	then
	2173	mpilib=mvapich
[738]	2174	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
	2175	then
	2176	mpilib=impi
[493]	2177	fi
[221]	2178	fi
	2179
	2180
	2181
[1]	2182	###########################################################################
	2183	# HEADER-AUSGABE
	2184	###########################################################################
	2185
	2186
	2187	calltime=$(date)
	2188	printf "\n"
	2189	# [[ $silent = false ]] && clear
	2190	printf "#--------------------------------------------------------------# \n"
	2191	printf "\| $version$calltime \| \n"
	2192	printf "\| \| \n"
	2193	spalte1="called on:"; spalte2=$localhost_realname
	2194	printf "\| $spalte1$spalte2 \| \n"
	2195	if [[ $local_compile = false ]]
	2196	then
	2197	if [[ $do_remote = true ]]
	2198	then
	2199	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2200	else
	2201	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2202	fi
	2203	else
	2204	spalte1="compiling test only!"; spalte2=""
	2205	fi
	2206	printf "\| $spalte1$spalte2 \| \n"
	2207	if [[ -n $numprocs ]]
	2208	then
	2209	spalte1="number of PEs:"; spalte2=$numprocs
	2210	printf "\| $spalte1$spalte2 \| \n"
	2211	fi
	2212	if [[ -n $tasks_per_node ]]
	2213	then
	2214	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	2215	printf "\| $spalte1$spalte2 \| \n"
	2216	fi
[759]	2217	if [[ $maximum_parallel_io_streams != $numprocs ]]
	2218	then
	2219	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
	2220	printf "\| $spalte1$spalte2 \| \n"
	2221	fi
[622]	2222	if [[ $use_openmp = true ]]
[1]	2223	then
	2224	spalte1="threads per task:"; spalte2="$threads_per_task"
	2225	printf "\| $spalte1$spalte2 \| \n"
	2226	fi
	2227	printf "\| \| \n"
	2228	if [[ $do_compile = true ]]
	2229	then
[475]	2230	if [[ "$mopts" != "" ]]
	2231	then
[493]	2232	spalte1="make options:"; spalte2=$mopts
[475]	2233	printf "\| $spalte1$spalte2 \| \n"
	2234	zeile=$(echo "$mopts" \| cut -c41-)
	2235	while [[ "$zeile" != "" ]]
	2236	do
	2237	spalte1=""
	2238	spalte2=$zeile
	2239	printf "\| $spalte1$spalte2 \| \n"
	2240	zeile=$(echo "$zeile" \| cut -c41-)
	2241	done
	2242	fi
	2243
[493]	2244	spalte1="cpp directives:"; spalte2=$cpp_options
[1]	2245	printf "\| $spalte1$spalte2 \| \n"
[82]	2246	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2247	while [[ "$zeile" != "" ]]
	2248	do
	2249	spalte1=""
	2250	spalte2=$zeile
	2251	printf "\| $spalte1$spalte2 \| \n"
	2252	zeile=$(echo "$zeile" \| cut -c41-)
	2253	done
	2254
[493]	2255	spalte1="compiler options:"; spalte2="$fopts"
[1]	2256	printf "\| $spalte1$spalte2 \| \n"
[82]	2257	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2258	while [[ "$zeile" != "" ]]
	2259	do
	2260	spalte1=""
	2261	spalte2=$zeile
	2262	printf "\| $spalte1$spalte2 \| \n"
	2263	zeile=$(echo "$zeile" \| cut -c41-)
	2264	done
	2265
[493]	2266	spalte1="linker options:"; spalte2=$lopts
[1]	2267	printf "\| $spalte1$spalte2 \| \n"
[82]	2268	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2269	while [[ "$zeile" != "" ]]
	2270	do
	2271	spalte1=""
	2272	spalte2=$zeile
	2273	printf "\| $spalte1$spalte2 \| \n"
	2274	zeile=$(echo "$zeile" \| cut -c41-)
	2275	done
	2276
[493]	2277	spalte1="modules to be load:"; spalte2=$modules
	2278	printf "\| $spalte1$spalte2 \| \n"
	2279	zeile=$(echo "$modules" \| cut -c41-)
	2280	while [[ "$zeile" != "" ]]
	2281	do
	2282	spalte1=""
	2283	spalte2=$zeile
	2284	printf "\| $spalte1$spalte2 \| \n"
	2285	zeile=$(echo "$zeile" \| cut -c41-)
	2286	done
	2287
[1]	2288	spalte1="main program":; spalte2=$mainprog
	2289	printf "\| $spalte1$spalte2 \| \n"
	2290	else
	2291	spalte1=executable:; spalte2=$executable
	2292	printf "\| $spalte1$spalte2 \| \n"
	2293	fi
	2294	printf "\| \| \n"
	2295	spalte1="base name of files":; spalte2=$fname
	2296	printf "\| $spalte1$spalte2 \| \n"
	2297	if [[ $fname != $afname ]]
	2298	then
	2299	spalte1="base name of input files":; spalte2=$afname
	2300	printf "\| $spalte1$spalte2 \| \n"
	2301	fi
	2302	spalte1="INPUT control list":; spalte2=$input_list
	2303	printf "\| $spalte1$spalte2 \| \n"
	2304	spalte1="OUTPUT control list":; spalte2=$output_list
	2305	printf "\| $spalte1$spalte2 \| \n"
	2306
	2307	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2308	then
	2309	spalte1="memory demand / PE":; spalte2="$memory MB"
	2310	printf "\| $spalte1$spalte2 \| \n"
	2311	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2312	printf "\| $spalte1$spalte2 \| \n"
	2313	fi
	2314
	2315	if [[ $do_compile = true ]]
	2316	then
	2317	printf "\| \| \n"
	2318	printf "\| Files to be compiled: \| \n"
	2319	zeile=$source_list
	2320	while [[ "$zeile" != "" ]]
	2321	do
	2322	spalte3=$zeile
	2323	printf "\| $spalte3 \| \n"
	2324	zeile=$(echo "$zeile" \| cut -c61-)
	2325	done
	2326	fi
	2327	printf "#--------------------------------------------------------------#"
	2328
	2329
	2330
	2331	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2332	if [[ $do_trace = true ]]
	2333	then
	2334	(( i = 0 ))
	2335	while (( i < iin ))
	2336	do
	2337	(( i = i + 1 ))
	2338	if (( i == 1 ))
	2339	then
	2340	printf "\n\n >>> INPUT-file assignments:\n"
	2341	fi
	2342	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2343	done
	2344	(( i = 0 ))
	2345	while (( i < iout ))
	2346	do
	2347	(( i = i + 1 ))
	2348	if (( i == 1 ))
	2349	then
	2350	printf "\n\n >>> OUTPUT-file assignments:\n"
	2351	fi
	2352	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2353	done
	2354	(( i = 0 ))
	2355	while (( i < iic ))
	2356	do
	2357	(( i = i + 1 ))
	2358	if (( i == 1 ))
	2359	then
	2360	printf "\n\n >>> INPUT-commands:\n"
	2361	fi
	2362	printf "\n ${in_command[$i]}"
	2363	done
	2364	(( i = 0 ))
	2365	while (( i < ioc ))
	2366	do
	2367	(( i = i + 1 ))
	2368	if (( i == 1 ))
	2369	then
	2370	printf "\n\n >>> OUTPUT-commands:\n"
	2371	fi
	2372	printf "\n ${out_command[$i]}"
	2373	done
	2374	fi
	2375
	2376
	2377	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2378	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2379	then
	2380	antwort=dummy
	2381	printf "\n\n"
	2382	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2383	do
	2384	printf " >>> everything o.k. (y/n) ? "
	2385	read antwort
	2386	done
	2387	if [[ $antwort = n \|\| $antwort = N ]]
	2388	then
	2389	locat=user_abort; (( iec = 0 )); exit
	2390	fi
	2391	if [[ $do_batch = true ]]
	2392	then
	2393	printf " >>> batch-job will be created and submitted"
	2394	else
	2395	if [[ $local_compile = false ]]
	2396	then
	2397	printf " >>> MRUN will now continue to execute on this machine"
	2398	else
	2399	printf " >>> a test compilation will now be carried out on this machine"
	2400	fi
	2401	fi
	2402	fi
	2403
[807]	2404	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
	2405	if [[ $check_namelist_files == true && $fromhost == $localhost && $run_coupled_model == false ]]
	2406	then
	2407	if [[ $ocean_file_appendix == true ]]
	2408	then
	2409	d3par_string="d3o#"
	2410	d3fpar_string="d3of"
	2411	else
	2412	d3par_string="d3#"
	2413	d3fpar_string="d3f"
	2414	fi
[1]	2415
[807]	2416	tmp_check=${working_directory}/tmp_check
[1]	2417
[807]	2418	# GET PARAMETER FILE SUFFIX (USUALLY "_P3D")
	2419	line=""
	2420	found=false
	2421	grep "$d3par_string" $config_file \| grep "PARIN" > $tmp_check
	2422	while read line1
	2423	do
	2424	line="$line1"
	2425	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2426	then
	2427	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING ENTFERNEN
	2428	p3d_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
	2429	found=true
	2430	fi
	2431	done < $tmp_check
	2432
	2433	if [[ $found = false ]]
	2434	then
	2435	printf "\n +++ no PARIN list entry found for $d3par_string in the configuration file."
	2436
	2437	locat=check_namelist; exit
	2438	fi
	2439
	2440	# GET RESTART PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
	2441	# NOT NECESSARILY REQUIRED
	2442	line=""
	2443	found=false
	2444	grep "d3f" $config_file \| grep "PARIN" > $tmp_check
	2445	while read line1
	2446	do
	2447	line="$line1"
	2448	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2449	then
	2450	p3df_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
	2451	found=true
	2452	fi
	2453	done < $tmp_check
	2454
	2455	if [[ $found = false ]]
	2456	then
	2457	printf "\n +++ no PARIN list entry found for d3f in the configuration file."
	2458	fi
	2459
	2460	rm -rf ${working_directory}/tmp_check
	2461
	2462	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
	2463	check_depository="${working_directory}/trunk/UTIL"
	2464	check_sources="${working_directory}/tmp_check_namelist_files"
	2465
	2466	# CHECK IF THE A P3DF FILE MUST BE CHECKED
	2467	for item in $input_list
	2468	do
	2469	if [[ "$item" == "restart" \|\| "$item" == d3f \|\| "$item" == d3of ]]
	2470	then
	2471	check_restart=1
	2472	else
	2473	check_restart=0
	2474	fi
	2475	done
	2476
	2477	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
	2478	if [[ ! -f $working_directory/JOBS/$fname/INPUT/${fname}${p3d_suffix} ]]
	2479	then
	2480	printf "\n\n +++ ERROR: parameter file (${fname}${p3d_suffix}) not found."
	2481	locat=check_namelist; exit
	2482	fi
	2483
	2484	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
	2485	if [[ $check_restart == 1 ]]
	2486	then
	2487	if [[ ! -f $working_directory/JOBS/$fname/INPUT/${fname}${p3df_suffix} ]]
	2488	then
	2489	printf "\n\n +++ WARNING: restart parameter file (${fname}${p3df_suffix}) is missing."
	2490	check_restart=0
	2491	answer=dummy
	2492	printf "\n\n"
	2493
	2494	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2495	do
	2496	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2497	read answer
	2498	done
	2499	if [[ $answer = a \|\| $answer = A ]]
	2500	then
	2501	printf "\n +++ Aborting...."
	2502	locat=normal; exit
	2503	fi
	2504	else
	2505	check_restart=1
	2506	fi
	2507	fi
	2508
	2509	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
	2510	mkdir $check_sources
	2511	cd $check_sources
	2512
	2513	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
	2514	if [[ -d $working_directory/USER_CODE/$fname ]]
	2515	then
	2516	printf "\n\n *** copying files from $check_depository"
	2517	cp $check_depository/check_namelist_files.tar ./
	2518
	2519	printf "\n\n *** untar of makefile and source files in $check_sources"
	2520	tar -xf check_namelist_files.tar > /dev/null 2>&1
	2521
	2522	printf "\n\n *** adding user code."
	2523	cp $working_directory/USER_CODE/$fname/* ./
	2524	touch check_namelist_files.f90
	2525
	2526	# GET COMPILER OPTIONS AND PERFORM MAKE
	2527	printf "\n\n *** compiling code if necessary...\n"
	2528	copts_check="-cpp -D_parallel -D__check"
	2529	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
	2530
	2531	# GET MAKE OUTPUT
	2532	if [[ $? != 0 ]]
	2533	then
	2534	rm -rf $check_sources
	2535	locat=check_namelist; exit
	2536	fi
	2537	else
	2538	cp $PALM_BIN/check_namelist_files.x ./
	2539	fi
	2540
	2541	cp $working_directory/JOBS/$fname/INPUT/${fname}${p3d_suffix} ./PARIN
	2542	if [[ $check_restart == 1 ]]
	2543	then
	2544	cp $working_directory/JOBS/$fname/INPUT/${fname}${p3df_suffix} ./PARINF
	2545	fi
	2546
	2547	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
	2548	cat > ENVPAR << %%END%%
	2549	&envpar run_identifier = '$fname', host = '$localhost',
	2550	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2551	maximum_parallel_io_streams = $maximum_parallel_io_streams,
	2552	maximum_cpu_time_allowed = ${cpumax}.,
	2553	revision = '$global_revision',
	2554	local_dvrserver_running = $local_dvrserver_running /
	2555
	2556	%%END%%
	2557
	2558	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
	2559	if [[ ! -f check_namelist_files.x ]] then
	2560	printf "\n +++ WARNING: check_namelist_files.x not found."
	2561	answer=dummy
	2562	printf "\n\n"
	2563	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2564	do
	2565	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2566	read answer
	2567	done
	2568	if [[ $answer = a \|\| $answer = A ]]
	2569	then
	2570	printf "\n +++ Aborting..."
	2571	rm -rf $check_sources
	2572	locat=normal; exit
	2573	else
	2574	printf "\n *** Skipping parameter file check."
	2575	fi
	2576	else
	2577	# STARTING THE PARAMETER FILE CHECK
	2578	printf "\n\n *** starting parameter file check..."
	2579
	2580	# CHECKING THE P3D FILE
	2581	printf "\n\n (1) checking $fname$p3d_suffix"
	2582	echo "$numprocs 0" > VARIN
	2583	errors=`./check_namelist_files.x < VARIN 2>&1`
	2584
	2585	check_error=false
	2586	if [[ "$errors" == "" ]]
	2587	then
	2588	printf " --> o.k."
	2589	else
	2590	printf " --> failed."
	2591	check_error=true
	2592	printf "\n\n $errors"
	2593	fi
	2594
	2595	# CHECKING THE PD3F FILE IF NECESSARY
	2596	if [[ $check_restart == 1 && $check_error == false ]]
	2597	then
	2598	printf "\n\n (2) checking $fname$p3df_suffix"
	2599
	2600	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
	2601	found=false
	2602	cat PARINF\|while read line
	2603	do
	2604	line=$(echo $line\|sed 's/ //g')
	2605	if [[ $line == "&inipar" ]]
	2606	then
	2607	start_search=true
	2608	fi
	2609
	2610	if [[ $start_search == true ]]
	2611	then
	2612	if [[ $line == "initializing_actions='read_restart_data'" ]]
	2613	then
	2614	found=true
	2615	break
	2616	fi
	2617	fi
	2618
	2619	if [[ $line == "/" ]]
	2620	then
	2621	start_search=false
	2622	fi
	2623
	2624	done
	2625
	2626	if [[ $found = false ]]
	2627	then
	2628	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
	2629	printf "\n in &inipar list in $fname$p3df_suffix."
	2630	rm -rf $check_sources
	2631	locat=check_namelist; exit
	2632	fi
	2633
	2634	echo "$numprocs 1" > VARIN
	2635	errors=`./check_namelist_files.x < VARIN 2>&1`
	2636
	2637	if [[ "$errors" == "" ]]
	2638	then
	2639	printf " --> o.k."
	2640	else
	2641	printf " --> failed."
	2642	check_error=true
	2643	printf "\n\n $errors"
	2644	fi
	2645	fi
	2646
	2647	# REPORT ERRORS AND CONTINUE/EXIT
	2648	if [[ $check_error == true ]]
	2649	then
	2650	printf "\n +++ errors found in the parameter file!\n"
	2651	answer=dummy
	2652	printf "\n\n"
	2653
	2654	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2655	do
	2656	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2657	read answer
	2658	done
	2659
	2660	if [[ $answer = a \|\| $answer = A ]]
	2661	then
	2662	printf "\n +++ Aborting..."
	2663	rm -rf $check_sources
	2664	locat=normal; exit
	2665	fi
	2666	else
	2667	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
	2668	fi
	2669	rm -rf $check_sources
	2670	fi
	2671	else
	2672	printf "\n\n +++ skipping parameter file check\n"
	2673	fi
	2674
	2675	cd $working_directory
	2676
	2677	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2678	# CHENDE AKTIONEN DURCHGEFUEHRT
[1]	2679	if [[ $do_batch = false ]]
	2680	then
	2681
	2682
	2683	# TEMPORAEREN KATALOG ERZEUGEN
	2684	mkdir -p $TEMPDIR
	2685	chmod go+rx $TEMPDIR
	2686	tmpcreate=true
	2687
[493]	2688	# set striping on lustre file system
	2689	# if [[ $localhost = lcsgih ]]
	2690	# then
	2691	# lfs setstripe -s 8192k -c 16 $TEMPDIR
	2692	# lfs getstripe $TEMPDIR
	2693	# fi
[1]	2694
[493]	2695
[1]	2696	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2697	# TEMPORAERES VERZEICHNIS KOPIEREN
	2698	if [[ $do_compile = true ]]
	2699	then
	2700
	2701	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2702	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2703	if [[ $localhost = nech ]]
	2704	then
	2705	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2706	if mkdir -p $TEMPDIR_COMPILE
	2707	then
	2708	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2709	printf "\n is generated as temporary directory for cross compiling\n"
	2710	else
	2711	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2712	printf "\n needed for cross compilation failed"
	2713	locat=compile
	2714	exit
	2715	fi
	2716	else
	2717	TEMPDIR_COMPILE=$TEMPDIR
	2718	fi
	2719
	2720
[82]	2721	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2722	line=""
	2723	grep "%depository_path" $config_file > tmp_mrun
	2724	while read line
	2725	do
	2726	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2727	then
	2728	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2729	then
[82]	2730	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2731	fi
[82]	2732	fi
	2733	done < tmp_mrun
[1]	2734
[82]	2735	line=""
	2736	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2737	while read line
	2738	do
	2739	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2740	then
[211]	2741	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2742	then
	2743	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2744	fi
[1]	2745	fi
[82]	2746	done < tmp_mrun
[1]	2747
[82]	2748	if [[ "$local_depository_path" = "" ]]
	2749	then
	2750	if [[ "$global_depository_path" != "" ]]
[1]	2751	then
[82]	2752	local_depository_path=$global_depository_path
[1]	2753	else
[82]	2754	printf "\n\n +++ no depository path found in configuration file"
	2755	printf "\n for local host \"$localhost\" "
	2756	printf "\n please set \"\%depository_path\" in configuration file\n"
	2757	locat=config_file; exit
[1]	2758	fi
[82]	2759	fi
	2760	eval local_depository_path=$local_depository_path
[215]	2761	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2762	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2763
[215]	2764
[82]	2765	basename=`print $mainprog \| cut -f1 -d"."`
	2766	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2767	if [[ ! -f $make_depository ]]
	2768	then
	2769	printf "\n"
	2770	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2771	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2772	else
	2773	cp $make_depository $TEMPDIR_COMPILE
[1]	2774	cd $TEMPDIR_COMPILE
[82]	2775	tar -xf $make_depository > /dev/null 2>&1
[1]	2776	cd - > /dev/null
	2777	fi
[82]	2778
	2779	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2780
[1]	2781	else
[475]	2782
[1]	2783	cp $executable ${TEMPDIR}/a.out
[475]	2784
[1]	2785	fi
	2786
	2787
	2788	# WECHSEL IN TEMPORAEREN KATALOG
[475]	2789	cd $TEMPDIR
[1]	2790	printf "\n *** changed to temporary directory: $TEMPDIR"
	2791
	2792
	2793	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2794	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2795	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2796	# ERMITTELN
	2797	(( i = 0 ))
	2798	while (( i < iout ))
	2799	do
	2800	(( i = i + 1 ))
	2801	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2802	then
	2803	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2804	else
	2805	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2806	fi
	2807	done
	2808
	2809
	2810	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2811	if [[ $do_compile = true ]]
	2812	then
	2813
	2814
	2815	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2816	printf "\n\n\n *** compilation starts \n$striche\n"
	2817	printf " *** compilation with make using following options:\n"
[211]	2818	printf " make depository: $make_depository"
[475]	2819	if [[ "$mopts" != "" ]]
	2820	then
	2821	printf " make options: $mopts\n"
	2822	fi
[82]	2823	printf " compilername: $compiler_name\n"
[475]	2824	printf " compiler options: $fopts\n"
[493]	2825	printf " preprocessor directives: $cpp_options \n"
	2826	printf " linker options: $lopts \n"
	2827	if [[ "$modules" != "" ]]
	2828	then
	2829	printf " modules to be load: $modules \n"
	2830	fi
[82]	2831	printf " source code files: $source_list \n"
	2832
	2833	if [[ $localhost = nech ]]
[1]	2834	then
[493]	2835	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[82]	2836	cp $TEMPDIR_COMPILE/a.out .
	2837	[[ $? != 0 ]] && compile_error=true
	2838	rm -rf $TEMPDIR_COMPILE
[312]	2839	elif [[ $localhost = ibmh ]]
	2840	then
[325]	2841	printf " compiler is called via ssh on \"plogin1\" \n"
[493]	2842	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[312]	2843	[[ ! -f a.out ]] && compile_error=true
	2844	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[197]	2845	elif [[ $localhost = lcsgib ]]
	2846	then
[540]	2847	printf " compiler is called via ssh on \"bicegate0\" \n"
	2848	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2849	[[ ! -f a.out ]] && compile_error=true
	2850	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2851	elif [[ $localhost = lcsgih ]]
	2852	then
[738]	2853	printf " compiler is called via ssh on \"hicegate0\" \n"
	2854	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2855	[[ ! -f a.out ]] && compile_error=true
	2856	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[755]	2857	elif [[ $localhost = lcflow ]]
	2858	then
	2859	printf " compiler is called via ssh on \"flow\" \n"
	2860	ssh flow02.hpc.uni-oldenburg.de -l $usern ". /cm/local/apps/environment-modules/3.2.6/Modules/3.2.6/init/bash; echo $MODULEPATH; echo $MODULESHOME; MODULEPATH=/cm/shared/modulefiles/; module load netcdf/intel/64/4.1.3 intel/ics/64/2011.0.013 intel/impi/64/4.0.1.007 hdf5/intel/64/1.8.7; cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2861	[[ ! -f a.out ]] && compile_error=true
	2862	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2863	else
[544]	2864	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
[493]	2865	[[ "$module_calls" != "" ]] && eval $module_calls
[475]	2866	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
[807]	2867
[82]	2868	fi
[1]	2869
	2870	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2871	then
	2872	printf "\n +++ error occured while compiling or linking"
	2873	locat=compile
[181]	2874
[182]	2875	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2876	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2877	# then
[181]	2878	exit
[197]	2879	# else
	2880	# locat=normal
	2881	# fi
[1]	2882	else
	2883	printf "$striche\n *** compilation finished \n"
	2884	fi
	2885	fi
	2886
	2887
	2888	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2889	if [[ $local_compile = true ]]
	2890	then
	2891	cd $HOME
	2892	rm -rf $TEMPDIR
	2893	locat=local_compile; exit
	2894	fi
	2895
	2896
	2897	# BEREITSTELLEN DER INPUT-DATEIEN
	2898	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2899	(( i = 0 ))
	2900	while (( i < iin ))
	2901	do
	2902	(( i = i + 1 ))
	2903	if (( i == 1 ))
	2904	then
	2905	printf "\n\n *** providing INPUT-files:\n$striche"
	2906	fi
	2907
	2908
	2909	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2910	if [[ "${transin[$i]}" = unavailable ]]
	2911	then
	2912	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2913	then
	2914	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2915	printf "\n is not available!"
	2916	else
	2917	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2918	printf "\n is not available!"
	2919	fi
	2920	continue
	2921	fi
	2922
	2923	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2924	files_for_pes=false; datentyp=file
	2925	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2926	then
	2927	files_for_pes=true; datentyp=directory
	2928	actionin[$i]=""
	2929	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2930	then
	2931	actionin[$i]=""
	2932	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2933	then
	2934	files_for_pes=true; datentyp=directory
	2935	actionin[$i]="ar"
	2936	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2937	then
	2938	actionin[$i]="ar"
	2939	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2940	then
	2941	files_for_pes=true; datentyp=directory
	2942	actionin[$i]="fl"
	2943	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2944	then
	2945	actionin[$i]="fl"
	2946	fi
	2947
	2948	if [[ $files_for_pes = true ]]
	2949	then
	2950	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2951	else
	2952	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2953	fi
	2954
	2955	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2956	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2957	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2958	# SERVER ZU HOLEN
	2959	if [[ "${actionin[$i]}" = fl ]]
	2960	then
	2961	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2962	if [[ $files_for_pes = false ]]
	2963	then
	2964	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2965	then
	2966	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2967	got_tmp[$i]=true
	2968	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2969	then
	2970	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2971	printf "\n *** trying to use backup copy in \"$WORK\" "
	2972	cp $WORK/${frelin[$i]} ${localin[$i]}
	2973	else
	2974	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2975	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2976	printf "\n *** trying to get copy from archive"
	2977	actionin[$i]=ar
	2978	fi
	2979	else
	2980	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2981	then
	2982	mkdir ${localin[$i]}
[149]	2983	cd $tmp_data_catalog/${frelin[$i]}
	2984	for file in $(ls *)
	2985	do
	2986	ln $file $TEMPDIR/${localin[$i]}
	2987	done
	2988	cd $TEMPDIR
[1]	2989	got_tmp[$i]=true
	2990	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2991	then
	2992	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2993	printf "\n *** trying to use backup copy in \"$WORK\" "
	2994	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2995	else
	2996	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2997	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2998	printf "\n *** trying to get copy from archive"
	2999	actionin[$i]=ar
	3000	fi
	3001	fi
	3002	fi
	3003
	3004
	3005	# DATEI LIEGT AUF ARCHIV-SERVER
	3006	if [[ "${actionin[$i]}" = ar ]]
	3007	then
	3008
	3009	if [[ $files_for_pes = false ]]
	3010	then
	3011	printf "\n file will be restored from archive-system ($archive_system)!"
	3012	else
	3013	printf "\n directory will be restored from archive-system ($archive_system)!"
	3014	fi
	3015
	3016	file_restored=false
	3017
	3018	if [[ $archive_system = asterix ]]
	3019	then
	3020	do_stagein=true
	3021	(( stagein_anz = 0 ))
	3022	while [[ $do_stagein = true ]]
	3023	do
	3024	if [[ $files_for_pes = false ]]
	3025	then
	3026	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	3027	else
	3028	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	3029	fi
	3030	cat STAGEIN_OUTPUT
	3031	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	3032	then
	3033	file_restored=true
	3034	do_stagein=false
	3035	else
	3036	(( stagein_anz = stagein_anz + 1 ))
	3037	if (( stagein_anz == 10 ))
	3038	then
	3039	printf "\n +++ stagein stoped after 10 tries"
	3040	locat=stage
	3041	exit
	3042	fi
	3043	printf "\n +++ restoring from archive failed, trying again:"
	3044	sleep 900
	3045	fi
	3046	done
	3047	elif [[ $archive_system = DMF ]]
	3048	then
	3049	if [[ $files_for_pes = false ]]
	3050	then
	3051	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	3052	locat=DMF
	3053	exit
	3054	else
	3055	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	3056	cp -r $ARCHIVE/${frelin[$i]} $PWD
	3057	file_restored=true
	3058	fi
	3059	elif [[ $archive_system = tivoli ]]
	3060	then
	3061	if [[ $files_for_pes = false ]]
	3062	then
[399]	3063	if [[ $localhost = lcsgih ]]
[1]	3064	then
[399]	3065	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	3066	else
[399]	3067	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	3068	fi
	3069	else
	3070	(( inode = 0 ))
	3071	while (( inode < nodes ))
	3072	do
[399]	3073	if [[ $localhost = lcsgih ]]
[1]	3074	then
[399]	3075	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	3076	else
[399]	3077	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	3078	fi
	3079	(( inode = inode + 1 ))
	3080	done
	3081	fi
	3082	file_restored=true
	3083	elif [[ $archive_system = ut ]]
	3084	then
	3085	if [[ $files_for_pes = false ]]
	3086	then
	3087	cp $UT/${frelin[$i]} .
	3088	else
	3089	(( inode = 0 ))
	3090	while (( inode < nodes ))
	3091	do
	3092	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	3093	(( inode = inode + 1 ))
	3094	done
	3095	fi
	3096	file_restored=true
	3097	else
	3098	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	3099	locat=rearchive
	3100	exit
	3101	fi
	3102
	3103	if [[ $file_restored = true ]]
	3104	then
	3105
	3106	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	3107	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	3108	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	3109	if [[ $files_for_pes = false ]]
	3110	then
	3111	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	3112	else
	3113	mkdir $tmp_data_catalog/${frelin[$i]}
	3114	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	3115	fi
	3116	got_tmp[$i]=true
	3117
	3118	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	3119	mv ${frelin[$i]} ${localin[$i]}
	3120
	3121	fi
	3122	fi
	3123
	3124
	3125	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	3126	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	3127	then
	3128
	3129	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	3130	then
	3131
	3132	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	3133	printf "\n file will be provided for $numprocs processors"
	3134	mkdir ${localin[$i]}
	3135	ival=$numprocs
	3136	(( ii = 0 ))
	3137	while (( ii <= ival-1 ))
	3138	do
	3139	if (( ii < 10 ))
	3140	then
	3141	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	3142	elif (( ii < 100 ))
	3143	then
	3144	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	3145	elif (( ii < 1000 ))
	3146	then
	3147	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	3148	else
	3149	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	3150	fi
	3151	(( ii = ii + 1 ))
	3152	done
	3153
	3154	else
	3155
	3156	if [[ $files_for_pes = true ]]
	3157	then
	3158
	3159	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	3160	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	3161	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	3162	# PER MOVE UMBENANNT WERDEN
	3163	printf "\n providing $numprocs files for the respective processors"
	3164	mkdir ${localin[$i]}
[183]	3165	if [[ $link_local_input = true ]]
	3166	then
	3167	printf " using ln -f\n"
	3168	cd ${absnamein[$i]}
	3169	for file in $(ls *)
	3170	do
	3171	ln -f $file ${localin[$i]}
	3172	done
	3173	cd $TEMPDIR
	3174	fi
	3175	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	3176	if [[ ! -f "${localin[$i]}/_0000" ]]
	3177	then
	3178	if [[ $link_local_input = true ]]
	3179	then
	3180	printf " ln failed for .../_0000, using cp...\n"
	3181	fi
	3182	cp -r ${absnamein[$i]}/* ${localin[$i]}
	3183	fi
[1]	3184
	3185	else
	3186	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	3187	if [[ $link_local_input = true ]]
	3188	then
	3189	printf " using ln -f\n"
	3190	ln -f ${absnamein[$i]} ${localin[$i]}
	3191	fi
	3192	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	3193	if [[ ! -f "${localin[$i]}" ]]
	3194	then
	3195	if [[ $link_local_input = true ]]
	3196	then
	3197	printf " ln failed, using cp...\n"
	3198	fi
	3199	cp ${absnamein[$i]} ${localin[$i]}
	3200	fi
[1]	3201	fi
	3202	fi
	3203	fi
	3204
	3205	done
	3206	if (( i != 0 ))
	3207	then
	3208	printf "\n$striche\n *** all INPUT-files provided \n"
	3209	fi
	3210
	3211
	3212	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	3213	(( i = 0 ))
	3214	while (( i < iic ))
	3215	do
	3216	(( i = i + 1 ))
	3217	if (( i == 1 ))
	3218	then
	3219	printf "\n\n *** execution of INPUT-commands:\n$striche"
	3220	fi
	3221	printf "\n >>> ${in_command[$i]}"
	3222	eval ${in_command[$i]}
	3223	if (( i == iic ))
	3224	then
	3225	printf "\n$striche\n"
	3226	fi
	3227	done
	3228
	3229
	3230	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	3231	cpurest=${cpumax}.
	3232
	3233
[260]	3234	# START DVR STREAMING SERVER
	3235	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3236	then
	3237	if [[ "$dvr_server" != "" ]]
	3238	then
	3239
	3240	printf "\n\n *** preparing the dvr streaming server configuration file"
	3241
	3242	# Check, if a dvr server is already running
	3243	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	3244	if [[ "$running_dvrserver_id" != "" ]]
	3245	then
	3246
[261]	3247	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	3248	printf "\n This server is used instead starting a new one!"
[261]	3249	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	3250
	3251	else
	3252
	3253	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	3254	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	3255	then
	3256	cp ${PALM_BIN}/.dvrserver.config .
	3257
	3258	# Entering the BASEDIR, UID and GID into this file
	3259	user_id=`id -u`
	3260	group_id=`id -g`
	3261	# & is needed as seperator, because TEMPDIR contains /
	3262	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	3263	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	3264	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	3265	mv .dvrserver.3 .dvrserver.config
	3266	rm .dvrserver.1 .dvrserver.2
	3267
	3268	# Start dvr server in background, get his id and print on terminal
	3269	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	3270	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	3271	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	3272	local_dvrserver_running=.TRUE.
	3273	else
	3274	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	3275	printf "\n \"$PALM_BIN\" "
	3276	locat=dvr
	3277	exit
	3278	fi
	3279
	3280	fi
	3281
	3282	else
	3283	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	3284	fi
	3285	fi
	3286
	3287
	3288	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	3289	# LESEN VON PALM)
	3290	cat > ENVPAR << %%END%%
	3291	&envpar run_identifier = '$fname', host = '$localhost',
	3292	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
[759]	3293	maximum_parallel_io_streams = $maximum_parallel_io_streams,
[260]	3294	maximum_cpu_time_allowed = ${cpumax}.,
	3295	revision = '$global_revision',
	3296	local_dvrserver_running = $local_dvrserver_running /
	3297
	3298	%%END%%
	3299
	3300
[1]	3301	# PROGRAMMSTART
	3302	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	3303	PATH=$PATH:$TEMPDIR
	3304
[359]	3305	# MPI debug option (argument checking, slows down execution due to increased latency)
	3306	if [[ "$mpi_debug" = true ]]
	3307	then
	3308	export MPI_CHECK_ARGS=1
	3309	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	3310	fi
	3311
[693]	3312	if [[ "$totalview" = true ]]
	3313	then
	3314	printf "\n *** totalview debugger will be used"
	3315	tv_opt="-tv"
	3316	else
	3317	tv_opt=""
	3318	fi
	3319
[1]	3320	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	3321	then
	3322	if [[ "$ENVIRONMENT" = BATCH ]]
	3323	then
[211]	3324	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	3325	then
	3326	printf "\n +++ debug is allowed in interactive mode only"
	3327	locat=debug
	3328	exit
	3329	fi
[1]	3330	fi
[5]	3331	if [[ $localhost = decalpha ]]
[1]	3332	then
	3333	dxladebug a.out
[622]	3334	elif [[ $localhost = ibmh ]]
[1]	3335	then
	3336
	3337	# SETUP THE IBM MPI ENVIRONMENT
	3338	export MP_SHARED_MEMORY=yes
	3339	export AIXTHREADS_SCOPE=S
	3340	export OMP_NUM_THREADS=$threads_per_task
	3341	export AUTHSTATE=files
	3342	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3343
	3344	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	3345	export MP_ADAPTER_USE=shared
	3346	export MP_CPU_USE=multiple
	3347	export MP_TIMEOUT=1200
	3348
	3349	unset MP_TASK_AFFINITY
	3350
	3351	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	3352	#(( ii = 1 ))
	3353	#while (( ii <= $numprocs ))
	3354	#do
	3355	# echo $localhost_realname >> hostfile
	3356	# (( ii = ii + 1 ))
	3357	#done
	3358	#export MP_HOSTFILE=hostfile
	3359
	3360	if [[ "$LOADLBATCH" = yes ]]
	3361	then
	3362	totalview poe a.out $ROPTS
	3363	else
	3364	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3365	export TVDSVRLAUNCHCMD=ssh
	3366	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3367	fi
[211]	3368	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	3369	then
	3370	# CURRENTLY NO DEBUGGER ON LCSGI
	3371	if [[ $run_coupled_model = true ]]
	3372	then
	3373	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	3374	locat=debug
	3375	exit
[223]	3376	else
	3377	echo "no_coupling" > runfile_atmos
[211]	3378	fi
	3379	(( ii = $numprocs / $threads_per_task ))
	3380	export OMP_NUM_THREADS=$threads_per_task
	3381	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3382	if [[ $threads_per_task != 1 ]]
	3383	then
	3384	printf "\n threads per task: $threads_per_task"
	3385	fi
	3386	printf "\n\n"
[223]	3387	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3388	then
	3389	# export MPI_LAUNCH_TIMEOUT=360
	3390	if [[ "$totalview" = true ]]
	3391	then
	3392	printf "\n running totalview debugger"
[693]	3393	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
[223]	3394	else
	3395	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3396	fi
	3397	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3398	then
	3399	# ulimit -s 300000 # A too large stack size causes problems
	3400	# export MV2_NUM_PORTS=2
	3401	# export MV2_CPU_MAPPING=0:1:2:3
[362]	3402	if [[ "$totalview" = true ]]
	3403	then
	3404	printf "\n running totalview debugger"
[693]	3405	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
[362]	3406	else
	3407	mpiexec ./a.out $ROPTS < runfile_atmos
	3408	fi
[223]	3409	fi
[1]	3410	else
	3411	printf "\n +++ no debug available on \"$localhost\" "
	3412	printf "\n or not implemented in mrun so far"
	3413	locat=debug
	3414	exit
	3415	fi
[622]	3416
	3417	# end debug mode
[1]	3418	else
[622]	3419
	3420	# normal execution
[1]	3421	if [[ -n $numprocs ]]
	3422	then
	3423	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	3424	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	3425	then
	3426	# SETUP THE IBM MPI ENVIRONMENT
[693]	3427	if [[ $host != ibmh && $host != ibmkisti ]]
[312]	3428	then
	3429	export MP_SHARED_MEMORY=yes
	3430	export AIXTHREAD_SCOPE=S
	3431	export OMP_NUM_THREADS=$threads_per_task
	3432	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	3433	export AUTHSTATE=files
	3434	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3435	# export MP_PRINTENV=yes
[1]	3436
[312]	3437	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	3438	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	3439	export MP_WAIT_MODE=poll
	3440	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	3441	fi
[693]	3442
	3443	if [[ $host = ibmkisti ]]
	3444	then
	3445	export LANG=en_US
	3446	export MP_SHARED_MEMORY=yes
[696]	3447	if [[ $threads_per_task = 1 ]]
	3448	then
	3449	export MP_SINGLE_THREAD=yes
	3450	export MEMORY_AFFINITY=MCM
	3451	else
	3452	export OMP_NUM_THREADS=$threads_per_task
	3453	fi
[693]	3454	fi
	3455
[1]	3456	if [[ "$LOADLBATCH" = yes ]]
	3457	then
	3458	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	3459	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3460	then
[102]	3461	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3462	else
[343]	3463	if [[ $run_coupled_model = false ]]
	3464	then
	3465	if [[ "$ocean_file_appendix" = true ]]
	3466	then
	3467	echo "precursor_ocean" > runfile_atmos
	3468	else
	3469	echo "precursor_atmos" > runfile_atmos
	3470	fi
	3471	else
	3472	(( iia = $numprocs_atmos / $threads_per_task ))
	3473	(( iio = $numprocs_ocean / $threads_per_task ))
	3474	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3475	printf "\n using $coupled_mode coupling"
	3476	printf "\n\n"
	3477	echo "coupled_run $iia $iio" > runfile_atmos
	3478	fi
	3479	poe ./a.out $ROPTS < runfile_atmos
[1]	3480	fi
	3481	else
[622]	3482	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
[1]	3483	then
[102]	3484	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[693]	3485	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
[1]	3486	then
	3487	if [[ -f $hostfile ]]
	3488	then
	3489	cp $hostfile hostfile
	3490	else
	3491	(( ii = 1 ))
	3492	while (( ii <= $numprocs ))
	3493	do
	3494	echo $localhost_realname >> hostfile
	3495	(( ii = ii + 1 ))
	3496	done
	3497	fi
	3498	export MP_HOSTFILE=hostfile
[331]	3499	if [[ $run_coupled_model = false ]]
	3500	then
	3501	if [[ "$ocean_file_appendix" = true ]]
	3502	then
	3503	echo "precursor_ocean" > runfile_atmos
	3504	else
	3505	echo "precursor_atmos" > runfile_atmos
	3506	fi
	3507	else
	3508	(( iia = $numprocs_atmos / $threads_per_task ))
	3509	(( iio = $numprocs_ocean / $threads_per_task ))
	3510	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3511	printf "\n using $coupled_mode coupling"
	3512	printf "\n\n"
	3513	echo "coupled_run $iia $iio" > runfile_atmos
	3514	fi
[622]	3515	if [[ $localhost = ibmy ]]
	3516	then
	3517	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3518	else
	3519	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
	3520	fi
[331]	3521
[1]	3522	else
	3523	if [[ "$host_file" = "" ]]
	3524	then
	3525	printf "\n +++ no hostfile given in configuration file"
	3526	locat=config_file
	3527	exit
	3528	else
	3529	eval host_file=$host_file
	3530	fi
	3531	export MP_HOSTFILE=$host_file
[102]	3532	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3533	fi
	3534	fi
[251]	3535	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3536	then
	3537	(( ii = nodes ))
	3538	if [[ $ii = 1 ]]
	3539	then
	3540	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3541	export MPIPROGINF=YES
[61]	3542	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3543	echo "*** execution on single node with mpirun"
[102]	3544	mpirun -np $numprocs ./a.out $ROPTS
[1]	3545	else
	3546	(( i = 0 ))
	3547	while (( i < ii ))
	3548	do
	3549	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3550	(( i = i + 1 ))
	3551	done
	3552
	3553	echo "#!/bin/sh" > mpi_exec_shell
	3554	echo " " >> mpi_exec_shell
	3555	echo "set -u" >> mpi_exec_shell
	3556	echo "F_ERRCNT=0" >> mpi_exec_shell
	3557	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3558	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3559	echo "cpurest=$cpurest" >> mpi_exec_shell
	3560	echo "fname=$fname" >> mpi_exec_shell
	3561	echo "localhost=$localhost" >> mpi_exec_shell
	3562	echo "return_addres=$return_addres" >> mpi_exec_shell
	3563	echo "return_username=$return_username" >> mpi_exec_shell
	3564	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3565	echo "write_binary=$write_binary" >> mpi_exec_shell
	3566	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3567	echo " " >> mpi_exec_shell
	3568	echo "export F_ERRCNT" >> mpi_exec_shell
	3569	echo "export MPIPROGINV" >> mpi_exec_shell
	3570	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3571	echo "export cpurest" >> mpi_exec_shell
	3572	echo "export fname" >> mpi_exec_shell
	3573	echo "export localhost" >> mpi_exec_shell
	3574	echo "export return_addres" >> mpi_exec_shell
	3575	echo "export return_username" >> mpi_exec_shell
	3576	echo "export tasks_per_node" >> mpi_exec_shell
	3577	echo "export write_binary" >> mpi_exec_shell
	3578	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3579	echo " " >> mpi_exec_shell
[102]	3580	echo "exec ./a.out" >> mpi_exec_shell
[1]	3581
	3582	chmod u+x mpi_exec_shell
	3583	export MPIPROGINF=YES
	3584	mpirun -f multinode_config &
	3585	wait
	3586
	3587	fi
[440]	3588	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
[1]	3589	then
	3590
	3591	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3592	# DOES NOT EXIST
[179]	3593	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	3594	then
[179]	3595	if [[ -f $hostfile ]]
	3596	then
	3597	cp $hostfile hostfile
[746]	3598	(( ii = $numprocs / $threads_per_task ))
[179]	3599	else
	3600	(( ii = 1 ))
	3601	while (( ii <= $numprocs / $threads_per_task ))
	3602	do
	3603	echo $localhost_realname >> hostfile
	3604	(( ii = ii + 1 ))
	3605	done
	3606	fi
	3607	eval zeile=\"`head -n $ii hostfile`\"
	3608	printf "\n *** running on: $zeile"
[1]	3609	fi
[179]	3610
[1]	3611	(( ii = $numprocs / $threads_per_task ))
	3612	export OMP_NUM_THREADS=$threads_per_task
[696]	3613	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3614	if [[ $threads_per_task != 1 ]]
	3615	then
[405]	3616	# increase stack size to unlimited, because large runs
	3617	# may abort otherwise
	3618	ulimit -Ss unlimited
	3619	printf "\n threads per task: $threads_per_task stacksize: unlimited"
[1]	3620	fi
[102]	3621	if [[ $run_coupled_model = false ]]
[1]	3622	then
[291]	3623	if [[ "$ocean_file_appendix" = true ]]
	3624	then
	3625	echo "precursor_ocean" > runfile_atmos
	3626	else
	3627	echo "precursor_atmos" > runfile_atmos
	3628	fi
[102]	3629	printf "\n\n"
[179]	3630	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3631	then
[221]	3632	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3633	then
[366]	3634	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
	3635	# export MPI_DSM_DISTRIBUTE=1
	3636	# MPI_DSM_CPULIST: pin MPI processes to cores
[377]	3637	if [[ $use_openmp = false ]]
	3638	then
[412]	3639	if [[ "$sgi_feature" = ice2 ]]
	3640	then
	3641	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
	3642	else
	3643	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
	3644	fi
[622]	3645	else
	3646	unset MPI_DSM_CPULIST
[377]	3647	fi
[366]	3648	# MPI_IB_RAILS: use both IB rails on ICE2
	3649	export MPI_BUFS_PER_HOST=512
	3650	export MPI_IB_RAILS=2
[369]	3651	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
	3652	export MPI_CONNECTIONS_THRESHOLD=8192
[738]	3653	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
[562]	3654	export MPI_TYPE_DEPTH=20
[738]	3655	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
[683]	3656	export MPI_GROUP_MAX=64
[738]	3657	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
[693]	3658	if [[ $use_openmp = true ]]
	3659	then
	3660	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
	3661	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
	3662	else
	3663	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
	3664	fi
[388]	3665
	3666	# next is test for openmp usage
[622]	3667	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
	3668	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
[221]	3669	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3670	then
[374]	3671	export MV2_NUM_PORTS=2
[376]	3672	# The default setting of MV2_CPU_MAPPING gives best results
[405]	3673	# export MV2_ENABLE_AFFINITY=1
[376]	3674	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
[412]	3675	# if [[ "$sgi_feature" = ice2 ]]
	3676	# then
	3677	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
	3678	# else
	3679	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
	3680	# fi
[678]	3681	if [[ $use_openmp = true ]]
	3682	then
	3683	unset MV2_CPU_MAPPING
	3684	export MV2_ENABLE_AFFINITY=0
	3685	fi
[412]	3686	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
[678]	3687	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
[622]	3688	if [[ $use_openmp = true ]]
[405]	3689	then
[678]	3690	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
[693]	3691	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
[405]	3692	else
[693]	3693	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
[405]	3694	fi
[738]	3695	elif [[ "$mpilib" = impi ]]
	3696	then
	3697	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
	3698	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
[221]	3699	fi
[437]	3700	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[179]	3701	then
[544]	3702	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[755]	3703	elif [[ $host = lcflow ]]
	3704	then
	3705	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
[164]	3706	else
[223]	3707	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3708	fi
[1]	3709	else
[164]	3710
[206]	3711	# currently there is no full MPI-2 support on ICE and XT4
	3712	(( iia = $numprocs_atmos / $threads_per_task ))
	3713	(( iio = $numprocs_ocean / $threads_per_task ))
	3714	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3715	printf "\n using $coupled_mode coupling"
[102]	3716	printf "\n\n"
[164]	3717
[206]	3718	if [[ $coupled_mode = "mpi2" ]]
[164]	3719	then
[206]	3720	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3721	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3722	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3723	then
[197]	3724
[221]	3725	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3726	then
	3727	# export MPI_LAUNCH_TIMEOUT=360
	3728	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3729	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3730	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3731	then
	3732	# ulimit -s 300000 # A too large stack size causes problems
	3733	# export MV2_NUM_PORTS=2
	3734	# export MV2_CPU_MAPPING=0:1:2:3
	3735	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3736	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3737	fi
[197]	3738
[437]	3739	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[206]	3740	then
[197]	3741
[206]	3742	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3743	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3744
	3745	else
	3746	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3747	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3748	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3749	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3750	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3751	fi
	3752	wait
	3753
[164]	3754	else
	3755
[206]	3756	echo "coupled_run $iia $iio" > runfile_atmos
	3757	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3758	then
	3759
[221]	3760	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3761	then
	3762	# export MPI_LAUNCH_TIMEOUT=360
	3763	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3764	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3765	then
	3766	# ulimit -s 300000 # A too large stack size causes problems
	3767	# export MV2_NUM_PORTS=2
	3768	# export MV2_CPU_MAPPING=0:1:2:3
	3769	mpiexec ./a.out $ROPTS < runfile_atmos
	3770	fi
[206]	3771
[437]	3772	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[206]	3773	then
	3774
	3775	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3776
[718]	3777	elif [[ $host = lck \|\| $host = lckordi ]]
[367]	3778	then
	3779	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
[206]	3780	fi
	3781	wait
[164]	3782	fi
[102]	3783
[206]	3784	fi
[1]	3785	elif [[ $host = decalpha ]]
	3786	then
[102]	3787	dmpirun -np $numprocs a.out $ROPTS
[440]	3788	elif [[ $host = lckyoto ]]
	3789	then
	3790	set -xv
	3791	export P4_RSHCOMMAND=plesh
	3792	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
	3793	if [[ "$ENVIRONMENT" = BATCH ]]
	3794	then
[505]	3795	if [[ "$cond2" = fujitsu ]]
	3796	then
	3797	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
	3798	elif [[ "cond2" = pgi ]]
	3799	then
	3800	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
	3801	else
	3802	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
	3803	fi
[440]	3804	else
[505]	3805	if [[ "$cond2" = "" ]]
	3806	then
	3807	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
	3808	else
	3809	mpirun -np $numprocs ./a.out $ROPTS
	3810	fi
[440]	3811	fi
	3812	set +xv
[1]	3813	elif [[ $host = lctit ]]
	3814	then
[678]	3815	export OMP_NUM_THREADS=$threads_per_task
	3816	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3817	if [[ "$threads_per_task" != 1 ]]
	3818	then
	3819	export MV2_ENABLE_AFFINITY=0
	3820	fi
	3821	echo "----- PBS_NODEFILE content:"
	3822	cat $PBS_NODEFILE
	3823	echo "-----"
	3824	(( ii = $numprocs / $threads_per_task ))
	3825	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
	3826	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
[1]	3827	else
[102]	3828	mpprun -n $numprocs a.out $ROPTS
[1]	3829	fi
	3830	[[ $? != 0 ]] && execution_error=true
	3831
	3832
	3833	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3834	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3835	then
	3836	apprentice
	3837	fi
	3838	else
[102]	3839	a.out $ROPTS
[1]	3840	fi
	3841	fi
	3842	if [[ $? != 0 \|\| $execution_error = true ]]
	3843	then
	3844
	3845	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3846	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3847	printf "\n +++ runtime error occured"
	3848	locat=execution
	3849	exit
	3850	else
[102]	3851	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3852	printf "\n$striche\n *** execution finished \n"
[260]	3853
[261]	3854	# Stop the dvr streaming server and process the dvr output in order
	3855	# to create dvrs- and html-files containing all streams
[260]	3856	if [[ "$dvrserver_id" != "" ]]
	3857	then
	3858	kill $dvrserver_id
	3859	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3860
[262]	3861	# If there is a directory, data have been output by the
	3862	# streaming server. Otherwise, user has chosen dvrp_output=local
	3863	if [[ -d DATA_DVR ]]
	3864	then
[261]	3865
[262]	3866	# Add the current dvr configuration file to the dvr output
	3867	# directory
	3868	cp .dvrserver.config DATA_DVR
	3869
	3870	# Process the dvr output (option -s for also generating
	3871	# sequence mode data)
	3872	process_dvr_output -d DATA_DVR -f $fname -s
	3873
	3874	else
	3875
	3876	# Process the local output
	3877	process_dvr_output -l -d DATA_DVR -f $fname
	3878
	3879	fi
	3880
	3881	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3882	then
	3883
	3884	# Process dvr output generated in local mode (dvrp_output=local)
	3885	process_dvr_output -l -d DATA_DVR -f $fname
	3886
[260]	3887	fi
[1]	3888	fi
	3889
	3890
	3891
[503]	3892	# Call of combine_plot_fields in order to merge single files written
	3893	# by each PE into one file.
	3894	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
	3895	then
	3896	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
	3897	printf "\n 2d- and/or 3d-data may be incomplete!"
	3898	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
	3899	else
	3900	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
	3901	combine_plot_fields${block}.x
	3902	fi
	3903
	3904
	3905
[1]	3906	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3907	(( i = 0 ))
	3908	while (( i < ioc ))
	3909	do
	3910	(( i = i + 1 ))
	3911	if (( i == 1 ))
	3912	then
	3913	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3914	fi
	3915	printf "\n >>> ${out_command[$i]}"
	3916	eval ${out_command[$i]}
	3917	if (( i == ioc ))
	3918	then
	3919	printf "\n$striche\n"
	3920	fi
	3921	done
	3922
	3923
	3924	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3925	if [[ $do_trace = true ]]
	3926	then
	3927	printf "\n\n"
	3928	ls -al
	3929	fi
	3930
	3931
	3932
	3933	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3934	(( i = 0 ))
	3935	while (( i < iout ))
	3936	do
	3937	(( i = i + 1 ))
	3938	if (( i == 1 ))
	3939	then
	3940	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3941	fi
	3942
	3943	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3944	files_for_pes=false; filetyp=file
	3945	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3946	then
	3947	files_for_pes=true; filetyp=directory
	3948	actionout[$i]=""
	3949	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3950	then
	3951	actionout[$i]=""
	3952	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3953	then
	3954	files_for_pes=true; filetyp=directory
	3955	actionout[$i]="ar"
	3956	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3957	then
	3958	actionout[$i]="ar"
	3959	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3960	then
	3961	files_for_pes=true; filetyp=directory
	3962	actionout[$i]="fl"
	3963	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3964	then
	3965	actionout[$i]="fl"
	3966	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3967	then
	3968	files_for_pes=true; filetyp=directory
	3969	actionout[$i]="tr"
	3970	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3971	then
	3972	actionout[$i]="tr"
	3973	fi
	3974
	3975	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3976	then
	3977	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3978	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3979	then
	3980	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3981	else
	3982
	3983
	3984	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3985	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3986	# REMOTE-RECHNUNGEN
	3987	if [[ "${actionout[$i]}" = tr ]]
	3988	then
	3989	if [[ $localhost != $fromhost ]]
	3990	then
	3991	if [[ $files_for_pes = false ]]
	3992	then
	3993	cps=""
	3994	cst=""
	3995	else
	3996	cps=-c
	3997	cst="/"
	3998	fi
[622]	3999	if [[ $localhost = nech ]]
[1]	4000	then
	4001
	4002	# TRANSFER IN EIGENSTAENDIGEM JOB
	4003	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	4004	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	4005	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	4006	if [[ $files_for_pes = false ]]
	4007	then
	4008	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	4009	else
	4010	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	4011	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	4012	fi
	4013
	4014	echo "set -x" > transfer_${localout[$i]}
	4015	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	4016
	4017	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	4018	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	4019	printf "\n or higher cycle\n"
	4020	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	4021
[1]	4022	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	4023
	4024	if [[ $localhost = nech ]]
	4025	then
[82]	4026	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	4027	else
	4028	if [[ "$LOGNAME" = b323013 ]]
	4029	then
[164]	4030	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	4031	else
[164]	4032	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	4033	fi
	4034	fi
	4035
	4036	else
	4037
	4038	# TRANSFER INNERHALB DIESES JOBS
	4039	transfer_failed=false
[82]	4040	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	4041	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	4042	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	4043	[[ $? != 0 ]] && transfer_failed=true
[1]	4044
	4045	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	4046	# LOKALER MASCHINE ANLEGEN
	4047	if [[ $transfer_failed = true ]]
	4048	then
	4049	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	4050	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	4051
	4052	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	4053	# ANLEGEN.
	4054	eval local_catalog=${pathout[$i]}
	4055	if [[ ! -d $local_catalog ]]
	4056	then
	4057	printf " *** local directory does not exist. Trying to create:\n"
	4058	printf " $local_catalog \n"
	4059	mkdir -p $local_catalog
	4060	fi
	4061	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	4062	transfer_problems=true
	4063	fi
	4064	fi
	4065	else
	4066
	4067	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	4068	actionout[$i]=""
	4069	fi
	4070	fi
	4071
	4072
	4073	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	4074	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	4075	# REMOTE-RECHNUNGEN
	4076	if [[ "${actionout[$i]}" = tra ]]
	4077	then
	4078	if [[ $localhost != $fromhost ]]
	4079	then
[622]	4080	if [[ $localhost = ibmh \|\| $localhost = nech ]]
[1]	4081	then
	4082
	4083	# TRANSFER IN EIGENSTAENDIGEM JOB
	4084	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	4085	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	4086	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	4087	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	4088
	4089	echo "set -x" > transfer_${localout[$i]}
	4090	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	4091
	4092	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	4093	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	4094	printf "\n or higher cycle\n"
	4095	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	4096
[1]	4097	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	4098
	4099	if [[ $localhost = nech ]]
	4100	then
[82]	4101	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	4102	else
	4103	if [[ $LOGNAME = b323013 ]]
	4104	then
[164]	4105	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	4106	else
[164]	4107	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	4108	fi
	4109	fi
	4110
	4111	else
	4112
	4113	# TRANSFER INNERHALB DIESES JOBS
	4114	transfer_failed=false
[82]	4115	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	4116	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	4117	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	4118	[[ $? != 0 ]] && transfer_failed=true
[1]	4119
	4120	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	4121	# LOKALER MASCHINE ANLEGEN
	4122	if [[ $transfer_failed = true ]]
	4123	then
	4124	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	4125	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	4126
	4127	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	4128	# ANLEGEN
	4129	eval local_catalog=${pathout[$i]}
	4130	if [[ ! -d $local_catalog ]]
	4131	then
	4132	printf " *** local directory does not exist. Trying to create:\n"
	4133	printf " $local_catalog \n"
	4134	mkdir -p $local_catalog
	4135	fi
	4136
	4137	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	4138	transfer_problems=true
	4139	fi
	4140	fi
	4141	else
	4142
	4143	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	4144	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	4145	actionout[$i]=a
	4146	fi
	4147	fi
	4148
	4149
	4150	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	4151	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	4152	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	4153	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	4154	if [[ "${actionout[$i]}" = fl ]]
	4155	then
	4156	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4157	chmod g+rx $tmp_data_catalog
	4158	if [[ $files_for_pes = false ]]
	4159	then
	4160	printf "\n >>> OUTPUT: ${localout[$i]} to"
	4161	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	4162	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	4163	else
	4164	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	4165	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	4166	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	4167	cd ${localout[$i]}
	4168	for file in $(ls *)
	4169	do
	4170	ln -f $file $tmp_data_catalog/${frelout[$i]}
	4171	done
	4172	cd $TEMPDIR
[1]	4173	fi
	4174
	4175
	4176	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	4177	if [[ $store_on_archive_system = true ]]
	4178	then
	4179
	4180	if [[ $archive_system = asterix ]]
	4181	then
	4182	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4183	if [[ $files_for_pes = false ]]
	4184	then
	4185	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4186	else
	4187	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4188	fi
	4189	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4190	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	4191	echo "then" >> archive_${frelout[$i]}
	4192	echo " do_stageout=false" >> archive_${frelout[$i]}
	4193	echo "else" >> archive_${frelout[$i]}
	4194	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	4195	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	4196	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	4197	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	4198	if [[ $files_for_pes = false ]]
	4199	then
	4200	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	4201	else
	4202	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	4203	fi
	4204	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	4205	echo "fi" >> archive_${frelout[$i]}
	4206	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4207	elif [[ $archive_system = DMF ]]
	4208	then
	4209	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4210	if [[ $files_for_pes = false ]]
	4211	then
	4212	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	4213	locat=DMF
	4214	exit
	4215	else
	4216	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	4217	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	4218	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	4219	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	4220	fi
	4221	elif [[ $archive_system = tivoli ]]
	4222	then
	4223	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4224	if [[ $files_for_pes = false ]]
	4225	then
	4226	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4227	echo "set -x" >> archive_${frelout[$i]}
	4228	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4229	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4230	else
	4231
	4232	echo "set -x" >> archive_${frelout[$i]}
	4233	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	4234	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4235	cd $tmp_data_catalog
	4236	all_files=`ls -1 ${frelout[$i]}/*`
	4237	cd - > /dev/null
	4238	(( inode = 0 ))
	4239	(( tp1 = tasks_per_node + 1 ))
	4240	while (( inode < nodes ))
	4241	do
	4242	# echo "*** all_files = \"$all_files\" "
	4243	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	4244	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	4245	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	4246	# echo "*** files = \"$files\" "
	4247	# echo "*** all_files = \"$all_files\" "
[416]	4248	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4249	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4250	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
	4251	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[397]	4252	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	4253	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[1]	4254	(( inode = inode + 1 ))
	4255	done
	4256	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4257	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4258	fi
	4259	elif [[ $archive_system = ut ]]
	4260	then
	4261	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4262	if [[ $files_for_pes = false ]]
	4263	then
	4264	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4265	echo "set -x" >> archive_${frelout[$i]}
	4266	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4267	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4268	else
	4269
	4270	echo "set -x" >> archive_${frelout[$i]}
	4271	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	4272	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4273	cd $tmp_data_catalog
	4274	all_files=`ls -1 ${frelout[$i]}/*`
	4275	cd - > /dev/null
	4276	(( inode = 0 ))
	4277	(( tp1 = tasks_per_node + 1 ))
	4278	while (( inode < nodes ))
	4279	do
	4280	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	4281	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	4282	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4283	(( inode = inode + 1 ))
	4284	done
	4285	fi
	4286	elif [[ $archive_system = none ]]
	4287	then
	4288	printf " +++ archiving on $localhost not available!\n"
	4289	fi
	4290
	4291	if [[ $archive_system != none ]]
	4292	then
[399]	4293	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
[1]	4294	then
[164]	4295	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[416]	4296	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
[1]	4297	elif [[ $localhost = nech ]]
	4298	then
[82]	4299	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	4300	fi
	4301	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4302	fi
	4303	else
[399]	4304	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
[1]	4305	fi
	4306
	4307
	4308	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	4309	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	4310	if [[ $files_for_pes = false ]]
	4311	then
	4312	cat /dev/null > ${pathout[$i]}
	4313	else
	4314	mkdir -p ${pathout[$i]}
	4315	fi
	4316
	4317	fi
	4318
	4319
	4320	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	4321	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	4322	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	4323	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	4324	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	4325	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	4326	if [[ "${actionout[$i]}" = ar ]]
	4327	then
	4328	if [[ $files_for_pes = false ]]
	4329	then
	4330	printf "\n >>> OUTPUT: ${localout[$i]} to"
	4331	printf "\n ${pathout[$i]}"
	4332	printf "\n File will be copied to archive-system ($archive_system) !\n"
	4333	else
	4334	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	4335	printf "\n ${pathout[$i]}"
	4336	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	4337	fi
	4338	mv ${localout[$i]} ${frelout[$i]}
	4339
	4340	file_saved=false
	4341
	4342	if [[ $archive_system = asterix ]]
	4343	then
	4344	do_stageout=true
	4345	(( stageout_anz = 0 ))
	4346	while [[ $do_stageout = true ]]
	4347	do
	4348	if [[ $files_for_pes = false ]]
	4349	then
	4350	stageout ${frelout[$i]} > STAGE_OUTPUT
	4351	else
	4352	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	4353	fi
	4354	cat STAGE_OUTPUT
	4355	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	4356	then
	4357	file_saved=true
	4358	do_stageout=false
	4359	else
	4360	if [[ $files_for_pes = false ]]
	4361	then
	4362	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	4363	else
	4364	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	4365	fi
	4366	(( stageout_anz = stageout_anz + 1 ))
	4367	if (( stageout_anz == 10 ))
	4368	then
	4369	printf "\n +++ stoped after 10 unsuccessful tries!"
	4370	archive_save=false
	4371	do_stageout=false
	4372	else
	4373	printf "\n *** new try to store on archive after 15 min:"
	4374	sleep 900
	4375	fi
	4376	fi
	4377	done
	4378	elif [[ $archive_system = DMF ]]
	4379	then
	4380	if [[ $files_for_pes = false ]]
	4381	then
	4382	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	4383	locat=DMF
	4384	exit
	4385	else
	4386	rm -rf $ARCHIVE/${frelout[$i]}
	4387	cp -r ${frelout[$i]} $ARCHIVE
	4388	fi
	4389	file_saved=true
	4390	elif [[ $archive_system = tivoli ]]
	4391	then
	4392	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4393	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4394	# GELEGT WERDEN
	4395	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4396	chmod g+rx $tmp_data_catalog
	4397	if [[ $files_for_pes = false ]]
	4398	then
	4399	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4400	else
	4401	mkdir $tmp_data_catalog/${frelout[$i]}
	4402	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4403	fi
	4404
	4405	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4406	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4407	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4408	if [[ $files_for_pes = false ]]
	4409	then
	4410	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4411	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4412	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4413	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4414	else
	4415	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4416	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4417	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4418	fi
	4419
[164]	4420	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	4421	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4422	file_saved=true
	4423
	4424	elif [[ $archive_system = ut ]]
	4425	then
	4426	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4427	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4428	# GELEGT WERDEN
	4429	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4430	chmod g+rx $tmp_data_catalog
	4431	if [[ $files_for_pes = false ]]
	4432	then
	4433	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4434	else
	4435	mkdir $tmp_data_catalog/${frelout[$i]}
	4436	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4437	fi
	4438
	4439	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4440	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4441	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4442	if [[ $files_for_pes = false ]]
	4443	then
	4444	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4445	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4446	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4447	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4448	else
	4449	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4450	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4451	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4452	fi
	4453
[82]	4454	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	4455	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4456	file_saved=true
	4457
	4458	else
	4459	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	4460	archive_save=false
	4461	fi
	4462	if [[ $file_saved = true ]]
	4463	then
	4464	if [[ $files_for_pes = false ]]
	4465	then
	4466	cat /dev/null > ${pathout[$i]}
	4467	else
	4468	mkdir -p ${pathout[$i]}
	4469	fi
	4470	fi
	4471	fi
	4472
	4473	# APPEND AUF LOKALER MASCHINE
	4474	if [[ "${actionout[$i]}" = "a" ]]
	4475	then
[741]	4476	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
	4477	then
	4478	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
	4479	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
	4480	else
	4481	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	4482	cat ${localout[$i]} >> ${pathout[$i]}
	4483	fi
[1]	4484	fi
	4485
	4486	# KOPIEREN AUF LOKALER MASCHINE
	4487	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	4488	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	4489	then
	4490
	4491	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	4492	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	4493	then
	4494	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	4495	if [[ $link_local_output = true ]]
	4496	then
	4497	printf " using ln -f\n"
	4498	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4499	fi
	4500	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4501	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	4502	then
	4503	if [[ $link_local_output = true ]]
	4504	then
	4505	printf " ln failed, using cp...\n"
	4506	fi
	4507	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4508	fi
[1]	4509	else
	4510	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	4511	if [[ $link_local_output = true ]]
	4512	then
	4513	printf " using ln -f\n"
	4514	ln -f ${localout[$i]} ${pathout[$i]}
	4515	fi
	4516	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4517	if [[ ! -f "${pathout[$i]}" ]]
	4518	then
	4519	if [[ $link_local_output = true ]]
	4520	then
	4521	printf " ln failed, using cp...\n"
	4522	fi
	4523	cp ${localout[$i]} ${pathout[$i]}
	4524	fi
[1]	4525	fi
	4526
	4527	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	4528	then
	4529
	4530	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	4531	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	4532	# WIRD DANN KOPIERT
	4533	# PER MOVE UMBENANNT WERDEN
	4534	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	4535	if [[ $link_local_output = true ]]
	4536	then
	4537	printf " using ln -f\n"
	4538	mkdir ${pathout[$i]}
	4539	cd ${localout[$i]}
	4540	for file in $(ls *)
	4541	do
	4542	ln -f $file ${pathout[$i]}
	4543	done
	4544	cd $TEMPDIR
	4545	fi
	4546	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	4547	if [[ ! -f "${pathout[$i]}/_0000" ]]
	4548	then
	4549	if [[ $link_local_output = true ]]
	4550	then
	4551	printf " ln failed for .../_0000, using cp...\n"
	4552	fi
	4553	cp -r ${localout[$i]} ${pathout[$i]}
	4554	fi
[1]	4555
	4556	fi
	4557	fi
	4558	done
	4559	if (( i != 0 ))
	4560	then
	4561	if [[ $transfer_problems = true ]]
	4562	then
	4563	printf "\n$striche\n *** OUTPUT-files saved"
	4564	printf "\n +++ WARNING: some data transfers failed! \n"
	4565	else
	4566	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4567	fi
	4568	fi
	4569
	4570
	4571	# EVENTUELL FOLGEJOB STARTEN
	4572	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4573	if [[ -f CONTINUE_RUN ]]
	4574	then
	4575
	4576	if [[ $archive_save = true ]]
	4577	then
	4578
	4579	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4580	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4581	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4582	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4583	# HANDEN
	4584	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4585	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4586	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4587	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4588	then
	4589	mc=`echo $mc \| sed 's/#/f/g'`
	4590	fi
	4591
	4592
	4593	# JOB STARTEN
	4594	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4595	echo " $mc"
	4596	printf "\n$striche\n"
	4597	if [[ $localhost != $fromhost ]]
	4598	then
	4599
[693]	4600	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
[1]	4601	then
	4602	echo "*** ssh will be used to initiate restart-runs!"
	4603	echo " return_addres=\"$return_addres\" "
	4604	echo " return_username=\"$return_username\" "
[635]	4605	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
[1]	4606	then
[757]	4607	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.1/073/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4608	else
[693]	4609	if [[ $localhost = ibmkisti ]]
	4610	then
	4611	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
	4612	else
	4613	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4614	fi
[1]	4615	fi
	4616	else
	4617	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4618	locat=restart; exit
	4619	fi
	4620
	4621	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4622	# DER AKTUELLE JOB ENDET
[399]	4623	if [[ $queue = special1q ]]
	4624	then
	4625	sleep 120
	4626	else
	4627	sleep 30
	4628	fi
[1]	4629
	4630	else
	4631
	4632	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4633	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4634	cd $LOCAL_PWD
[108]	4635	if [[ $localhost = lcfimm ]]
	4636	then
	4637	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4638	else
	4639	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4640	fi
[1]	4641	cd - > /dev/null
	4642	fi
	4643	printf "\n$striche\n *** restart-run initiated \n"
	4644
	4645
	4646	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4647	# GEHOLT WORDEN SIND, LOESCHEN
	4648	(( i = 0 ))
	4649	while (( i < iin ))
	4650	do
	4651	(( i = i + 1 ))
	4652	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4653	then
	4654	rm -r $tmp_data_catalog/${frelin[$i]}
	4655	fi
	4656	done
	4657
	4658	else
	4659
	4660	printf "\n +++ no restart-run possible, since errors occured"
	4661	printf "\n during the archive process"
	4662	fi
	4663
	4664	fi
	4665
	4666
	4667
	4668	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4669	if [[ "$email_notification" != "none" ]]
[1]	4670	then
	4671
	4672	if [[ $localhost != $fromhost ]]
	4673	then
	4674	if [[ -f CONTINUE_RUN ]]
	4675	then
	4676	echo "PALM restart run necessary" > email_text
	4677	echo "description header of actual run:" >> email_text
	4678	cat CONTINUE_RUN >> email_text
	4679	echo "mrun-command to restart:" >> email_text
	4680	echo "$mc" >> email_text
	4681	else
	4682	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4683	fi
	4684	mail $email_notification < email_text
	4685	printf "\n *** email notification sent to \"$email_notification\" "
	4686	fi
	4687	fi
	4688
	4689
	4690
	4691	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4692	cd $HOME
	4693	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4694
	4695	else
	4696
	4697
	4698	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4699	# CHENDE AKTIONEN DURCHGEFUEHRT
	4700
	4701	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[693]	4702	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q \$queue -R $return_addres -U $return_username -u $remote_username"
[1]	4703	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4704	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4705	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4706	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4707	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4708	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4709	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4710	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4711	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4712	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4713	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4714	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4715	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4716	if [[ $use_openmp = true ]]
	4717	then
[622]	4718	mrun_com=${mrun_com}" -O $threads_per_task"
[1]	4719	fi
[759]	4720	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
[397]	4721	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
[1]	4722	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4723	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4724	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4725	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4726	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4727	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[759]	4728	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
[1]	4729	if [[ $do_remote = true ]]
	4730	then
	4731	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4732	fi
	4733
	4734
	4735	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4736	jobfile=jobfile.$RANDOM
	4737
	4738
	4739	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4740	echo "mkdir $TEMPDIR" >> $jobfile
	4741	echo "cd $TEMPDIR" >> $jobfile
	4742
	4743
	4744	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4745	if [[ $do_trace = true ]]
	4746	then
	4747	echo "set -x" >> $jobfile
	4748	else
	4749	echo "set +vx" >> $jobfile
	4750	fi
	4751
	4752
[191]	4753	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4754	# DATEI FUER DEN JOB
[693]	4755	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
[1]	4756	then
	4757
[191]	4758	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4759	# KOPIEREN
	4760	if [[ $restart_run != true ]]
	4761	then
	4762	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4763	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4764	fi
[1]	4765
[191]	4766	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[693]	4767	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
[193]	4768	echo "set -x" >> $jobfile
[693]	4769	if [[ $host = $localhost ]]
	4770	then
	4771	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4772	else
	4773	if [[ $host != ibmkisti ]]
	4774	then
	4775	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4776	else
	4777	# on KISTI's IBM firewall is only opened on interactive node
	4778	echo "localdir=\`pwd\`" >> $jobfile
	4779	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
	4780	fi
	4781	fi
[193]	4782	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4783
[193]	4784	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4785	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4786	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4787	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4788	echo "execute_mrun=true" >> $jobfile
	4789	echo " " >> $jobfile
	4790
[191]	4791	else
	4792
	4793	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4794	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4795	if [[ $do_compile = true ]]
	4796	then
	4797
	4798	source_catalog=SOURCES_FOR_RUN_$fname
	4799
	4800	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4801	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4802	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4803	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4804	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4805	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4806
	4807	for filename in $source_list
	4808	do
	4809	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4810	echo "cat > $filename << \"%END%\"" >> $jobfile
	4811	cat $source_catalog/$filename >> $jobfile
	4812	echo " " >> $jobfile
	4813	echo "%END%" >> $jobfile
	4814	echo " " >> $jobfile
	4815	done
	4816
[1]	4817	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4818	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4819	cat $source_catalog/Makefile >> $jobfile
[1]	4820	echo " " >> $jobfile
	4821	echo "%END%" >> $jobfile
	4822	echo " " >> $jobfile
	4823
[191]	4824	echo "cd - > /dev/null" >> $jobfile
[1]	4825
[191]	4826	fi
[1]	4827
	4828
[191]	4829	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4830	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4831	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4832	cat $config_file >> $jobfile
	4833	echo "%END%" >> $jobfile
	4834	echo " " >> $jobfile
[1]	4835
	4836
[191]	4837	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4838	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[693]	4839	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4840	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4841	echo "%END%" >> $jobfile
[191]	4842	echo "chmod u+x $mrun_script_name" >> $jobfile
	4843	echo "execute_mrun=true" >> $jobfile
	4844	echo " " >> $jobfile
[1]	4845
	4846	fi
	4847
[191]	4848
[1]	4849	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4850	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4851	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4852	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4853	if [[ $do_remote = true ]]
	4854	then
	4855	(( i = 0 ))
	4856	while (( i < iin ))
	4857	do
	4858	(( i = i + 1 ))
	4859	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4860	if [[ "${transin[$i]}" = job ]]
	4861	then
	4862	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4863	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4864	echo " " >> $jobfile
	4865	echo "%END%" >> $jobfile
	4866	else
[82]	4867	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4868	fi
	4869
	4870	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4871	echo "if [[ \$? = 1 ]]" >> $jobfile
	4872	echo "then" >> $jobfile
	4873	echo " echo \" \" " >> $jobfile
	4874	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4875	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4876	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4877	echo " execute_mrun=false" >> $jobfile
	4878	echo "fi" >> $jobfile
	4879	done
	4880	fi
	4881
	4882	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4883	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4884	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4885	echo "export LOCAL_PWD" >> $jobfile
	4886
	4887	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4888	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4889	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4890
[66]	4891	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4892	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4893	then
	4894	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4895	fi
[1]	4896
[693]	4897	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
[1]	4898	echo "set -x" >> $jobfile
[693]	4899	echo "queue=$queue" >> $jobfile
[1]	4900	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4901
	4902	echo 'ls -al; echo `pwd`' >> $jobfile
	4903	echo "cd \$HOME" >> $jobfile
	4904	echo "rm -rf $TEMPDIR" >> $jobfile
	4905
	4906
	4907
	4908
	4909	# JOB PER SUBJOB STARTEN
	4910	if [[ $silent = false ]]
	4911	then
	4912	printf "\n "
	4913	else
	4914	printf "\n\n"
	4915	fi
	4916
[352]	4917	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
[1]	4918	rm -rf $jobfile
	4919
	4920
	4921	fi # ENDE REMOTE-TEIL
	4922
	4923
	4924
	4925	# ENDE DER PROZEDUR

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