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source: palm/trunk/SCRIPTS/mrun @ 738

Last change on this file since 738 was 738, checked in by raasch, 13 years ago
extension for impi library and adjustments for HLRN access
Property svn:keywords set to `Id Rev`
File size: 175.2 KB

Rev	Line
[71]	1	#!/bin/ksh
[503]	2	# mrun - script for running PALM jobs
[169]	3	# $Id: mrun 738 2011-08-17 14:51:23Z raasch $
[1]	4
[503]	5	# Procedure for interactive/batch PALM runs (initial runs and automatic
	6	# restart runs)
[1]	7
[503]	8	# Last changes:
[1]	9	# 03/03/94 - Siggi - Entwicklungsbeginn
	10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
	11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
	12	# zelne Variable exportiert. Dies ist noetig, weil an-
	13	# sonsten irgendein Speicher ueberlaeuft und von mrun
	14	# aufgerufene Programme (z.B. stageout) mit Fehlern
	15	# abbrechen (too many arguments)
	16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
	17	# defaultmaessig im RRZN-Profile eingeschaltet
	18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
	19	# wegfallen
	20	# 25/04/00 - Siggi - Version 1.5
	21	# remote_addres und remote_user in return_addres bzw.
	22	# return_username umbenannt, return_username wird dem
	23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
	24	# Neue Variable remote_username, die beim interaktiven
	25	# mrun-Aufruf zwingend ueber die neue Option -u oder
	26	# in der Konfigurationsdatei angegeben werden muss.
	27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
	28	# Version 1.7
	29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
	30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
	31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
	32	# zu bestimmen; Praeprozessoroptionen haben nun alle
	33	# die Form -Dtext=text, weil auf IBM sonst text durch
	34	# die leere Zeichenkette ersetzt wird
	35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
	36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
	37	# (-D$OMP=OMP) in order to avoid problems with
	38	# OMP_NUM_THREADS
	39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
	40	# tar files, one for each node used
	41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
	42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
	43	# 17/01/05 - Siggi - job for data transfer to local machine now within
	44	# job class c1 (HLRN)
	45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
	46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
	47	# base filename and cycle number
	48	# 16/02/05 - Gerald - hababai validated
	49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
	50	# 29/03/05 - Marcus - berni*-en0 validated
	51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
	52	# 24/04/05 - Siggi - netcdf support on lcmuk
	53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
	54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
	55	# number) can now be used within interactive runs
	56	# 12/05/05 - Siggi - netcdf support on ibm
	57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
	58	# 18/05/05 - Siggi - netcdf support on nec
	59	# 24/05/05 - Siggi - netcdf support on ibms
	60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
	61	# to 30 seconds
	62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
	63	# PATH is temporarily set)
	64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
	65	# caused warnings in the job protocol
	66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
	67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
	68	# removed
	69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
	70	# realized by file attribute trpe
	71	# 28/10/05 - Siggi - if existing, the file extension is output in case
	72	# of missing input file - no job abort in case of
	73	# missing input files with file extensions
	74	# (preliminary solution)
	75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
	76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
	77	# 07/12/05 - Siggi - gallego and elephanta admitted
	78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
	79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
	80	# 20/01/06 - Siggi - cpp directive for ibmy
	81	# 09/02/06 - Siggi - ibmy admitted for batch mode
	82	# 13/04/06 - Siggi - ostria admitted
	83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
	84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
	85	# optimization of OpenMP runs (option stacksize is
	86	# necessary for large gridpoint numbers because
	87	# otherwise a segmentation fault occurs)
	88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
	89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
	90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
	91	# 20/09/06 - Marcus - add DVRP library on nech
	92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
	93	# on local NAMELIST file ENVPAR
	94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
	95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
	96	# 06/02/07 - Siggi - add DVRP library on lcmuk
	97	# 07/02/07 - Siggi - revision of source code handling, source code is
	98	# now expected in directory given by source_path and
	99	# not in the current working directory, source code
	100	# files provided in add_source_path are allways
	101	# compiled, source code to be compiled is allways
	102	# sampled in SOURCES_FOR_RUN_$fname which is a
	103	# subdirectory of the current working directory,
[5]	104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
[1]	105	# adapted for RIAM (neck)
[5]	106	# bugfix for cycle number of output file (extout)
	107	# all hpmuk-related code removed
[14]	108	# 14/02/07 - Siggi - dvrp support for neck added
[21]	109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
[26]	110	# mrun_path replaced by PALM_BIN,
	111	# all machines are calling interpret_config.x
[66]	112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
	113	# output
[69]	114	# 16/03/07 - Siggi - adjustments for lctit
[78]	115	# 29/03/07 - Siggi - global revision transfered to batch job by new
	116	# option -G
[82]	117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
	118	# + netcdf/dvrp-options are read from configuration
	119	# file, host identifier (local_host) is read from
	120	# config file, code related to ftp filetransfer
	121	# removed (incl. option -f)
[97]	122	# 19/06/07 - Siggi - time limit for cdata jobs increased
[102]	123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
	124	# if new option -Y (coupling) is given,
	125	# output of executables to aout_output removed,
	126	# messages are immediately written to stdout instead
[108]	127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
	128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
	129	# variables out to the nodes in coupled mode -disabled-
	130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
[109]	131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
	132	# environment variables out to the nodes in coupled mode
[118]	133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
	134	# suggestions
[122]	135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
	136	# argument -g group_number, admit all sla* node_usage
	137	# queues
[129]	138	# 30/10/07 - Marcus - further adjustments for queues on lctit
[149]	139	# 14/02/08 - Bjoern - link of restart files with long file name possible
	140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
	141	# true, mrun tries "ln -f" on local output and resorts
	142	# to "cp" or "cp -r" on error
[164]	143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
	144	# which allows the user to choose his own job catalog
	145	# by setting job_catalog in the configuration file
	146	# (default is ~/job_queue),
[172]	147	# workaround for mpiexec with -env option,
[164]	148	# adjustments for lcxt4 (Bergen Center for Computational
	149	# Science)
[183]	150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
	151	# true, mrun tries "ln -f" on local input and resorts
	152	# to "cp" or "cp -r" on error
[180]	153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
[179]	154	# 14/07/08 - Siggi - adjustments for lcsgih
[188]	155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
[204]	156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
[210]	157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
	158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
	159	# argument
[211]	160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
	161	# file
	162	# 11/11/08 - Siggi - rules for using user code files changed: user
	163	# code splitted into one file per subroutine,
	164	# user can provide his/her own makefile, only
	165	# default source-code filenames are allowed
[215]	166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
[221]	167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
	168	# with environment variable mpilib
[223]	169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
	170	# using environment variable totalview
[246]	171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
	172	# interactive runs
[253]	173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
[260]	174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
	175	# dvr streaming server is automatically started using
	176	# new variable dvr_server and a configuration file
	177	# .dvrserver.config,
[261]	178	# processing of dvr output files using new script
	179	# process_dvr_output implemented, in order to make
	180	# dvr application more user friendly
[265]	181	# 20/03/09 - Marcus - update of n1ge command for lctit
[291]	182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
	183	# to be followed by a coupled atmosphere-ocean run
[343]	184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
	185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
[352]	186	# 08/07/09 - Siggi - default value for email_notification is none,
	187	# option -e added to subjob
[359]	188	# 19/08/09 - Marcus - MPI debug option
[362]	189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
[367]	190	# 25/08/09 - BjornM - adpated for lck
[369]	191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
[372]	192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
[397]	193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
	194	# switches on archiving, archiving on SGI-ICE enabled
[416]	195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
	196	# adjustment for special1q
	197	# 18/12/09 - Carolin- modification of archiving (permq)
[440]	198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
[475]	199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
	200	# implemented
[493]	201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
	202	# file (modules)
[503]	203	# 02/03/10 - Siggi - for each block in the configuration file, separate
	204	# utility programs are used, combine_plot_fields is
	205	# directly called and must not be given by an output
	206	# command in the configuration file any more
[540]	207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
	208	# lcsgih/lcsgib is done using the names
	209	# hicegate0/bicegate0 instead of the IP addresses
[544]	210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
[555]	211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
[622]	212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
	213	# has now argument threads_per_task
	214	# adjustments for Kyushu Univ. (lcrte, ibmku)
[635]	215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
	216	# institute of technology (lctit)
[669]	217	# 23/12/10 - Micha - different number of processors in ocean and atmosphere
	218	# is now allowed
[678]	219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
	220	# usage
[696]	221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
[693]	222	# usage, totalview usage extended
[721]	223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
	224	# 03/04/11 - Micha - added lckordi
	225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
[738]	226	# 17/08/11 - Siggi - extensions for impi library
[437]	227
	228
[1]	229
	230	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	231
	232	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	233	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	234	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	235
	236	AddFilenames=""
	237	additional_conditions=""
	238	add_source_path=""
	239	afname=""
	240	archive_save=true
	241	archive_system=none
	242	compiler_name=""
	243	cond1=""
	244	cond2=""
	245	config_file=.mrun.config
[206]	246	coupled_dist=""
	247	coupled_mode="mpi1"
[1]	248	cpp_opts=""
[82]	249	cpp_options=""
[1]	250	cpumax=0
	251	cpurest=0
	252	delete_temporary_catalog=true
	253	do_batch=false
	254	do_compile=true
	255	do_remote=false
	256	do_stagein=true
	257	do_stageout=true
	258	do_trace=false
[352]	259	email_notification="none"
[1]	260	exclude=""
	261	executable=""
	262	execution_error=false
[67]	263	fimm=false
[1]	264	fname=test
	265	fromhost=""
[78]	266	global_revision=""
[122]	267	group_number=none
[1]	268	host=""
	269	host_file=""
	270	hp=""
	271	ignore_archive_error=false
	272	input_list=""
	273	interpreted_config_file=""
[164]	274	job_catalog="~/job_queue"
[1]	275	job_on_file=""
	276	keep_data_from_previous_run=false
[183]	277	link_local_input=false
[149]	278	link_local_output=false
[1]	279	localhost_realname=$(hostname)
	280	local_compile=false
[260]	281	local_dvrserver_running=.FALSE.
[1]	282	locat=normal
	283	mainprog=""
	284	makefile=""
	285	mc=$0
	286	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	287	do
	288	mc=`echo $mc \| cut -f2- -d"/"`
	289	done
[493]	290	module_calls=""
[1]	291	mrun_script_name=$mc
[82]	292	netcdf_inc=""
	293	netcdf_lib=""
[1]	294	netcdf_support=false
	295	node_usage=default
	296	numprocs=""
[206]	297	numprocs_atmos=0
	298	numprocs_ocean=0
[1]	299	OOPT=""
	300	openmp=false
	301	output_list=""
	302	package_list=""
	303	punkte="..........................................................."
	304	queue=none
	305	read_from_config=""
[5]	306	restart_run=false
[622]	307	if [[ `hostname` = rte10 ]]
[1]	308	then
[622]	309	return_addres=133.5.185.60
[693]	310	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
	311	elif [[ `hostname` = climate0 ]]
	312	then
	313	return_addres=165.132.26.68
	314	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
[622]	315	else
	316	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	317	fi
	318	return_password=""
	319	return_username=$LOGNAME
	320	remotecall=false
	321	remote_username=""
[102]	322	run_coupled_model=false
[1]	323	run_mode=""
	324	scirocco=false
[397]	325	store_on_archive_system=false
[1]	326	striche=" ----------------------------------------------------------------------------"
	327	silent=false
	328	source_list=""
	329	source_path=SOURCE
	330	tasks_per_node=""
	331	threads_per_task=1
	332	tmpcreate=false
	333	tmp_data_catalog=""
	334	transfer_problems=false
	335	usern=$LOGNAME
[377]	336	use_openmp=false
[1]	337	working_directory=`pwd`
	338	TOPT=""
	339	XOPT=""
	340	zeit=$( date \| cut -c 12-19 )
	341
	342	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	343	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	344
[66]	345	typeset -R30 calltime
[1]	346	typeset -L20 spalte1
	347	typeset -L40 spalte2
	348	typeset -L60 spalte3
	349	typeset -L35 string1=`date`
	350	typeset -L12 string2=$usern
	351	typeset -L12 string3=$localhost_realname
	352	typeset -L12 string4
	353	typeset -L12 string5
[201]	354	typeset -L30 version="MRUN 2.0 Rev$Rev: 738 $"
[1]	355
	356
	357
	358	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	359	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	360
	361	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	362	# EXPORTIERT WERDEN
	363	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	364	export group_number input_list memory numprocs output_list queue run_mode
[1]	365
	366
	367
	368	# FEHLERBEHANDLUNG
	369	# BEI EXIT:
[83]	370	trap 'rm -rf $working_directory/tmp_mrun
[69]	371	if [[ $locat != localhost ]]
[1]	372	then
[22]	373	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	374	# then
	375	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	376	#MRUN-calls on $localhost
	377	#
	378	#date and time user localhost remotehost termination mrun-command
	379	#--------------------------------------------------------------------------------------------------------------------
	380	#%STATEND%
	381	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	382	# fi
	383	#
	384	# # EINTRAG IN DIE STATISTIK-DATEI
	385	# string4=$host
	386	# string5=$locat
	387	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	388	# then
	389	# if [[ $do_batch = true ]]
	390	# then
	391	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	392	# else
	393	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	394	# fi
	395	# fi
[69]	396	echo " " > /dev/null
[1]	397	fi
	398
	399	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	400	then
	401
	402	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	403	(( i = 0 ))
	404	while (( i < iec ))
	405	do
	406	(( i = i + 1 ))
	407	printf "\n *** Execution of ERROR-command:\n"
	408	printf " >>> ${err_command[$i]}\n"
	409	eval ${err_command[$i]}
	410	done
	411	if [[ -n $interpreted_config_file ]] then
	412	rm -rf $interpreted_config_file
	413	fi
[71]	414	if [[ -n .mrun_environment ]] then
	415	rm -rf .mrun_environment
	416	fi
[1]	417	if [[ $tmpcreate = true ]]
	418	then
	419	printf "\n *** Contents of \"$TEMPDIR\":\n"
	420	ls -al; cd
	421	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	422	fi
[260]	423	if [[ "$dvrserver_id" != "" ]]
	424	then
	425	echo "+++ killing dvrserver_id=$dvrserver_id"
	426	kill $dvrserver_id
	427	fi
[1]	428	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	429	then
	430	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	431	fi
	432	printf "\n\n+++ MRUN killed \n\n"
	433	elif [[ $locat != control_c ]]
	434	then
	435	printf "\n\n --> all actions finished\n\n"
	436	printf " Bye, bye $usern !!\n\n"
	437	fi' exit
	438
	439
	440	# BEI TERMINAL-BREAK:
[83]	441	trap 'rm -rf $working_directory/tmp_mrun
[69]	442	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	443	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	444	then
	445	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	446	fi
[260]	447	if [[ "$dvrserver_id" != "" ]]
	448	then
	449	echo "+++ killing dvrserver_id=$dvrserver_id"
	450	kill $dvrserver_id
	451	fi
[1]	452	printf "\n+++ MRUN killed by \"^C\" \n\n"
	453	locat=control_c
	454	exit
	455	' 2
	456
	457
[22]	458	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	459	# BEEN SET
	460	if [[ "$PALM_BIN" = "" ]]
	461	then
	462	printf "\n +++ environment variable PALM_BIN has not been set"
	463	printf "\n please set it to the directory where the PALM scripts are located"
	464	locat=palm_bin; exit
	465	fi
[180]	466	export PATH=$PALM_BIN:$PATH
[22]	467
	468
[1]	469
	470	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	471	# FUER FOLGEJOBS BENOETIGT WIRD
[622]	472	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vxX:yY: option
[1]	473	do
	474	case $option in
	475	(a) afname=$OPTARG;;
[397]	476	(A) store_on_archive_system=true; mc="$mc -A";;
[1]	477	(b) do_batch=true; mc="$mc -b";;
	478	(B) delete_temporary_catalog=false; mc="$mc -B";;
	479	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	480	(C) restart_run=true; mc="$mc -C";;
[1]	481	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	482	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	483	(F) job_on_file="-D"; mc="$mc -F";;
[122]	484	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	485	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	486	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	487	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	488	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	489	(I) ignore_archive_error=true; mc="$mc -I";;
	490	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	491	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	492	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	493	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	494	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	495	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
[622]	496	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
[1]	497	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	498	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	499	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	500	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	501	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	502	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	503	(S) read_from_config=false; mc="$mc -S";;
	504	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
	505	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
	506	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	507	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	508	(v) silent=true; mc="$mc -v";;
	509	(x) do_trace=true;set -x; mc="$mc -x";;
	510	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	511	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	512	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[1]	513	(\?) printf "\n +++ unknown option $OPTARG \n"
	514	printf "\n --> type \"$0 ?\" for available options \n"
	515	locat=parameter;exit;;
	516	esac
	517	done
	518
	519
	520	# EVTL. POSITIONSPARAMETER EINLESEN
	521	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	522	shift OPTIND-1
	523
	524
	525	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	526	if [[ "$1" = "?" ]]
	527	then
	528	(printf "\n *** mrun can be called as follows:\n"
[291]	529	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
[1]	530	printf "\n Description of available options:\n"
	531	printf "\n Option Description Default-Value"
	532	printf "\n -a base name of input files equiv. -d"
[400]	533	printf "\n -A archiving when using file-attribute fl"
[1]	534	printf "\n -b batch-job on local machine ---"
	535	printf "\n -B do not delete temporary directory at end ---"
	536	printf "\n -c configuration file .mrun.config"
	537	printf "\n -d base name of files attached to program test"
	538	printf "\n -D preprocessor(cpp)-directives \"\" "
	539	printf "\n -F create remote job file only ---"
	540	printf "\n -h execution host $localhost_realname"
	541	printf "\n -i INPUT control list \"\" "
	542	printf "\n -I archiving errors of previous batch-jobs"
	543	printf "\n will be ignored"
	544	printf "\n -k keep data from previous run"
	545	printf "\n -K additional conditions for controling"
	546	printf "\n usage of conditional code and"
	547	printf "\n env-variables in configuration file \"\" "
	548	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	549	printf "\n -M Makefile name Makefile"
	550	printf "\n -n node usage (shared/not_shared) depending on -h"
	551	printf "\n -o OUTPUT control list \"\" "
	552	printf "\n -O use OpenMP ---"
	553	printf "\n -p software package list \"\" "
	554	printf "\n -q queue \"$queue\" "
	555	printf "\n -r run control list (combines -i -o) \"\" "
	556	printf "\n -s filenames of routines to be compiled \"\" "
	557	printf "\n must end with .f, .f90, .F, or .c !"
	558	printf "\n use \"..\" for more than one file and wildcards"
	559	printf "\n -s TEST compiles all files with w-permit"
	560	printf "\n -S config file interpreted by shellscript ---"
	561	printf "\n -t allowed cpu-time in seconds (batch) 0"
	562	printf "\n -T tasks per node depending on -h"
	563	printf "\n -u username on remote machine \"\" "
	564	printf "\n -v no prompt for confirmation ---"
	565	printf "\n -x tracing of mrun for debug purposes ---"
	566	printf "\n -X # of processors (on parallel machines) 1"
[291]	567	printf "\n -y add appendix \"_O\" to all local output"
	568	printf "\n files (ocean precursor runs followed by"
	569	printf "\n coupled atmosphere-ocean runs) ---"
[206]	570	printf "\n -Y run coupled model, \"#1 #2\" with"
	571	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[1]	572	printf "\n "
	573	printf "\n Possible values of positional parameter <modus>:"
	574	printf "\n \"?\" - this outline \n\n") \| more
	575	exit
	576	elif [[ "$1" != "" ]]
	577	then
	578	printf "\n +++ positional parameter $1 unknown \n"
	579	locat=parameter; exit
	580	fi
	581
	582
	583
	584	# KURZE STARTMELDUNG
	585	printf "\n*** $version "
	586	printf "\n will be executed. Please wait ..."
	587
	588
[82]	589
	590	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	591	if [[ ! -f $config_file ]]
	592	then
	593	printf "\n\n +++ configuration file: "
	594	printf "\n $config_file"
	595	printf "\n does not exist"
	596	locat=connect; exit
	597	fi
	598
	599
	600	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	601	line=""
	602	grep "%host_identifier" $config_file > tmp_mrun
	603	while read line
	604	do
[206]	605	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	606	then
	607	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	608	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	609	if [[ $localhost_realname = $HOSTNAME ]]
[82]	610	then
	611	localhost=$host_identifier
	612	break
	613	fi
	614	fi
	615	done < tmp_mrun
	616
	617	if [[ "$localhost" = "" ]]
	618	then
	619	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	620	printf "\n for local host \"$localhost_realname\"."
	621	printf "\n Please add line"
	622	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	623	printf "\n to the configuration file."
	624	locat=localhost; exit
	625	fi
	626
	627
	628	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	629	case $localhost_realname in
[397]	630	(r1\|r2\|h01\|b01) archive_system=tivoli;;
[82]	631	(cs*) archive_system=ut;;
	632	(fimm.bccs.uib.no) fimm=true;;
	633	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	634	(scirocco) scirocco=true;;
	635	esac
	636
	637
	638
[1]	639	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	640	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	641	[[ "$afname" = "" ]] && afname=$fname
	642
	643
	644	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	645	if [[ "$run_mode" != "" ]]
	646	then
	647	input_list="$input_list $run_mode"
	648	output_list="$output_list $run_mode"
	649	fi
	650
	651
	652	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	653	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	654	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	655	# STARTET)
	656	if [[ "$fromhost" = "" ]]
	657	then
	658	fromhost=$localhost
	659	fi
	660
	661
	662	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
	663	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
	664	then
	665	source_list=TEST
	666	local_compile=true
	667	host=$localhost
	668	fi
	669
	670
	671	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	672	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	673	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	674	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	675	if [[ -n $host && "$host" != $localhost ]]
	676	then
	677	do_batch=true
	678	do_remote=true
	679	case $host in
[717]	680	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
[1]	681	(*) printf "\n"
[83]	682	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	683	printf "\n is not available"
[1]	684	locat=nqs; (( iec = 0 )); exit;;
	685	esac
	686	else
	687	host=$localhost
	688	fi
	689
	690
	691	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	692	if [[ -n $additional_conditions ]]
	693	then
[69]	694	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	695	cond1=`echo $additional_conditions \| cut -d" " -f1`
	696	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	697	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	698	if [[ -n $dummy ]]
	699	then
	700	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	701	locat=options; exit
	702	fi
[503]	703	block=_$cond1
	704	[[ -n $cond2 ]] && block=${block}_$cond2
[1]	705	fi
	706
	707
[206]	708	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	709	if [[ $run_coupled_model = true ]]
	710	then
	711
	712	if [[ -n $coupled_dist ]]
	713	then
	714
	715	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	716	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	717
	718	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	719	then
	720
	721	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	722	printf "\n PEs (total) : $numprocs"
	723	printf "\n PEs (atmosphere): $numprocs_atmos"
	724	printf "\n PEs (ocean) : $numprocs_ocean"
	725	locat=coupling; exit
	726
	727	fi
	728
	729	else
	730
	731	(( numprocs_ocean = $numprocs / 2 ))
	732	(( numprocs_atmos = $numprocs / 2 ))
	733
	734	fi
	735	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	736
	737	# GET coupled_mode FROM THE CONFIG FILE
	738	line=""
	739	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	740	while read line
	741	do
	742	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
	743	then
	744	coupled_mode="mpi2"
	745	fi
	746	done < tmp_mrun
	747
	748	fi
	749
	750
[1]	751	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	752	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	753	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	754	then
	755	if [[ $ignore_archive_error = false ]]
	756	then
	757	printf "\n +++ data archiving of previous run failed"
	758	printf "\n see directory \~/job_queue on remote machine"
	759	locat=archive; exit
	760	else
	761	printf "\n +++ warning: data archiving in a previous run failed"
	762	printf "\n MRUN continues, trying to get backup copy"
	763	fi
	764	fi
	765
	766
	767
	768	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	769	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	770	if [[ "$read_from_config" = false ]]
	771	then
	772
	773	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	774	while read zeile
	775	do
	776	[[ $silent = false ]] && printf "."
	777
	778
	779	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	780	# ERSETZEN
	781	eval zeile=\"$zeile\"
	782
	783
	784	# INTERPRETATION DER ZEILE
[21]	785	if [[ "$(echo $zeile)" = "" ]]
[1]	786	then
[21]	787	# LEERZEILE, KEINE AKTION
	788	continue
[1]	789
[21]	790	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	791	then
	792
[1]	793	# ZEILE IST KOMMENTARZEILE
	794	true
	795
	796	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	797	then
	798
	799	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	800	zeile=$(echo $zeile \| cut -c2-)
[69]	801	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	802	var=`echo $zeile \| cut -d" " -f1`
	803	value=`echo $zeile \| cut -d" " -s -f2`
	804	for_host=`echo $zeile \| cut -d" " -s -f3`
	805	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	806	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	807
	808	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	809	then
	810
	811	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	812	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	813	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	814
	815
	816	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	817	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	818	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	819	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	820	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	821	# KONFIGURATIONSDATEI
	822	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	823	then
	824	eval $var=\$value
	825
	826	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	827	if [[ $do_trace = true ]]
	828	then
	829	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	830	fi
	831	fi
	832
	833	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	834	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	835	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	836	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	837	if [[ $var = host ]]
	838	then
	839	if [[ -n $host && "$host" != $localhost ]]
	840	then
	841	do_batch=true
	842	do_remote=true
	843	case $host in
[717]	844	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
[83]	845	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	846	printf "\n is not available"
[1]	847	locat=nqs; exit;;
	848	esac
	849	else
	850	host=$localhost
	851	fi
	852	fi
	853
	854	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	855	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	856	# DEN PROGRAMMEN BENOETIGT WERDEN
	857	export $var
	858	fi
	859
	860
	861
	862
	863	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	864	then
	865
	866	# ZEILE DEFINIERT ERROR-KOMMANDO
	867	(( iec = iec + 1 ))
	868	zeile=$(echo $zeile \| cut -c4-)
	869	err_command[$iec]="$zeile"
	870
	871	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	872	then
	873
	874	# ZEILE DEFINIERT INPUT-KOMMANDO
	875	(( iic = iic + 1 ))
	876	zeile=$(echo $zeile \| cut -c4-)
	877	in_command[$iic]="$zeile"
	878
	879	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	880	then
	881
	882	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	883	(( ioc = ioc + 1 ))
	884	zeile=$(echo $zeile \| cut -c4-)
	885	out_command[$ioc]="$zeile"
	886
	887	else
	888
	889	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	890	# s2a: in/out - Feld
	891	# s2b: loc - Feld (optional)
	892	# s2c: tr/ar - Feld (optional)
[69]	893	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	894	s1=`echo $zeile \| cut -d" " -f1`
	895	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	896	s2a=$(echo $s2 \| cut -d":" -f1)
	897	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	898	then
	899	s2b=""
	900	s2c=""
	901	else
[69]	902	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	903	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	904	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	905	fi
[69]	906	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	907	s3=`echo $zeile \| cut -d" " -f3`
	908	s4=`echo $zeile \| cut -d" " -s -f4`
	909	s5=`echo $zeile \| cut -d" " -s -f5`
	910	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	911
	912
	913	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	914	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	915	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	916	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	917	# HANDEN SEIN MUSS (D.H. s2b = loc)
	918	IFSALT="$IFS"; IFS="$IFS:"
	919	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	920	then
	921	found=false
	922	for actual in $input_list
	923	do
	924	for formal in $s3
	925	do
	926	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	927	done
	928	done
	929	if [[ $found = true ]]
	930	then
	931	(( iin = iin + 1 ))
	932	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	933	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	934	extin[$iin]=$s6
	935	fi
	936	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	937	then
	938	found=false
	939	for actual in $output_list
	940	do
	941	for formal in $s3
	942	do
	943	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	944	done
	945	done
	946	if [[ $found = true ]]
	947	then
	948	(( iout = iout + 1 ))
	949	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	950	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	951	fi
	952	elif [[ "$s2a" != in && "$s2a" != out ]]
	953	then
	954	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	955	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	956	locat=connect; exit
	957	fi
	958	IFS="$IFSALT"
	959	fi
	960	done < $config_file
	961
	962	else
	963
	964
	965	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	966	[[ $silent = false ]] && printf "..."
	967	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	968	export interpreted_config_file=.icf.$RANDOM
	969
	970
[69]	971
	972	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	973	# VERFUEGUNG STELLEN
	974	cat > .mrun_environment << %%END%%
	975	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	976	config_file = '$config_file', do_remote = '$do_remote',
	977	do_trace = '$do_trace', host = '$host',
	978	input_list = '$input_list', icf = '$interpreted_config_file',
	979	localhost = '$localhost', output_list = '$output_list' /
	980
	981	%%END%%
	982
	983	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	984	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	985	mrun_memory=$memory
[127]	986	mrun_group_number=$group_number
[69]	987	mrun_cpumax=$cpumax
	988	mrun_numprocs=$numprocs
	989
[251]	990	if [[ $localhost_realname = "sx-fep" ]]
[66]	991	then
[251]	992	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	993	else
[503]	994
	995	if [[ "$host" != $localhost ]]
	996	then
	997
	998	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
	999	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
	1000	if [[ $? != 0 ]]
	1001	then
	1002	printf "\n\n +++ no interpret_config found"
	1003	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
	1004	locat=interpret_config; exit
	1005	fi
	1006	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
	1007	$interpret_config_executable
	1008
	1009	else
	1010
	1011	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
	1012	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
	1013	then
	1014	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
	1015	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
	1016	locat=interpret_config; exit
	1017	else
	1018	interpret_config${block}.x
	1019	fi
	1020
	1021	fi
[66]	1022	fi
[71]	1023	rm .mrun_environment
[1]	1024
[71]	1025
[1]	1026	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	1027	chmod u+x $interpreted_config_file
	1028	export PATH=$PATH:.
	1029	. $interpreted_config_file
[71]	1030	rm $interpreted_config_file
[1]	1031
[71]	1032
[69]	1033	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[71]	1034	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	1035	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[71]	1036	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	1037	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
[69]	1038
[1]	1039	fi
	1040
	1041
	1042	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	1043	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	1044	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	1045	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	1046	if [[ "$SOURCES_COMPLETE" = "" ]]
	1047	then
	1048
	1049	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	1050	# VEREINBART WURDE
	1051	source_path=""
	1052	line=""
	1053	grep "%source_path" $config_file > tmp_mrun
	1054	while read line
	1055	do
	1056	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1057	then
	1058	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	1059	then
	1060	global_source_path=`echo $line \| cut -d" " -f2`
	1061	fi
	1062	fi
	1063	done < tmp_mrun
	1064
	1065	line=""
	1066	found=false
	1067	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	1068	while read line
	1069	do
	1070	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1071	then
	1072	if [[ $found = true ]]
	1073	then
	1074	printf "\n\n +++ more than one source path found in configuration file"
	1075	printf "\n for local host \"$localhost\" "
	1076	locat=source_path; exit
	1077	fi
	1078	source_path=`echo $line \| cut -d" " -f2`
	1079	found=true
	1080	fi
	1081	done < tmp_mrun
	1082	rm tmp_mrun
	1083
	1084	if [[ "$source_path" = "" ]]
	1085	then
	1086	if [[ "$global_source_path" != "" ]]
	1087	then
	1088	source_path=$global_source_path
	1089	else
	1090	printf "\n\n +++ no source path found in configuration file"
	1091	printf "\n for local host \"$localhost\" "
	1092	locat=source_path; exit
	1093	fi
	1094	fi
	1095	eval source_path=$source_path
	1096
	1097	if [[ ! -d $source_path ]]
	1098	then
	1099	printf "\n\n +++ source path \"$source_path\" on local host"
	1100	printf "\n \"$localhost\" does not exist"
	1101	locat=source_path; exit
	1102	fi
	1103
	1104	fi
	1105
	1106
[78]	1107	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	1108	# DURCH OPTION -G MITGETEILT)
[693]	1109	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
[78]	1110	then
	1111	global_revision=`svnversion $source_path 2>/dev/null`
	1112	global_revision="Rev: $global_revision"
	1113	fi
[1]	1114
[78]	1115
[1]	1116	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1117	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1118	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1119	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1120	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1121	if [[ -n $host && "$host" != $localhost ]]
	1122	then
	1123	do_batch=true
	1124	do_remote=true
	1125	case $host in
[717]	1126	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
[1]	1127	(*) printf "\n"
[83]	1128	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1129	printf "\n is not available"
[1]	1130	locat=nqs; (( iec = 0 )); exit;;
	1131	esac
	1132	else
	1133	host=$localhost
	1134	fi
	1135
	1136
	1137	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1138	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1139	then
	1140
	1141	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1142	if [[ ! -n $numprocs ]]
	1143	then
	1144	printf "\n"
	1145	printf "\n +++ option \"-K parallel\" requires additional specification"
	1146	printf "\n of the number of processors to be used by"
	1147	printf "\n mrun-option \"-X\" or by environment-variable"
	1148	printf "\n \"numprocs\" in the configuration file"
	1149	locat=numprocs; (( iec = 0 )); exit
	1150	fi
	1151
	1152	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1153	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1154	# GESAMTPROZESSORANZAHL IST
[693]	1155	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmkisti \|\| $host = ibms ]]
[1]	1156	then
	1157	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
	1158	(( ival = $tasks_per_node ))
	1159	(( pes = numprocs ))
	1160	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1161	# then
	1162	# (( pes = pes - 1 ))
	1163	# fi
	1164	(( ii = pes / ival ))
	1165	if (( pes - ii * ival > 0 ))
	1166	then
	1167	printf "\n"
	1168	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1169	printf "\n divisor of the total number of processors (option \"-X\")"
	1170	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1171	locat=tasks_per_node; (( iec = 0 )); exit
	1172	fi
	1173	fi
	1174
	1175	# IBMY HAT NUR EINEN KNOTEN
	1176	if [[ $host = ibmy ]]
	1177	then
	1178	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1179	then
	1180	printf "\n"
	1181	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1182	printf "\n total number of processors (option \"-X\")"
	1183	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1184	locat=tasks_per_node; (( iec = 0 )); exit
	1185	fi
	1186	fi
	1187
	1188	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
	1189	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
[622]	1190	# if [[ $use_openmp = true ]]
	1191	# then
	1192	# threads_per_task=$tasks_per_node
	1193	# tasks_per_node=1
	1194	# fi
[377]	1195
	1196	# SETTINGS FOR SUBJOB-COMMAND
[622]	1197	TOPT="-T $tasks_per_node"
[1]	1198	OOPT="-O $threads_per_task"
	1199
	1200	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1201	if [[ "$tasks_per_node" != "" ]]
	1202	then
	1203	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1204	fi
	1205
	1206	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1207	# SETZEN
	1208	if [[ $node_usage = default ]]
	1209	then
	1210	if [[ $host = ibms ]]
	1211	then
	1212	node_usage=shared
[181]	1213	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1214	then
	1215	node_usage=singlejob
[1]	1216	else
	1217	node_usage=not_shared
	1218	fi
	1219	fi
[181]	1220
[635]	1221	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
[1]	1222	then
	1223	printf "\n"
	1224	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1225	printf "\n \"shared\" or \"not_shared\""
	1226	locat=tasks_per_node; (( iec = 0 )); exit
	1227	fi
	1228
	1229	fi
	1230
	1231	# PRUEFEN, OB HOSTFILE EXISTIERT
	1232	if [[ -n $hostfile ]]
	1233	then
	1234	if [[ ! -f $hostfile ]]
	1235	then
	1236	printf "\n"
	1237	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1238	locat=hostfile; exit
	1239	fi
	1240	fi
	1241
	1242	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1243	if [[ $host = ibmy && $do_remote = false ]]
	1244	then
	1245	if [[ ! -f $HOME/.rhosts ]]
	1246	then
	1247	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1248	printf "\n\n *** file:"
	1249	printf "\n $HOME/.rhosts"
	1250	printf "\n was created\n"
	1251	fi
	1252	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1253	then
	1254	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1255	printf "\n\n *** file:"
	1256	printf "\n $HOME/.rhosts"
	1257	printf "\n was extended by the name of the current host\n"
	1258	fi
	1259	fi
	1260
	1261
	1262
	1263	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1264	if [[ $queue = none ]]
	1265	then
	1266	case $host in
[312]	1267	(ibmh) queue=no_class;;
[693]	1268	(ibmkisti) queue=class.32plus;;
[1]	1269	(ibmy) queue=parallel;;
[440]	1270	(lckyoto) queue=ph;;
[191]	1271	(lcsgib) queue=bigq;;
	1272	(lcsgih) queue=bigq;;
[635]	1273	(lctit) queue=S;;
[1]	1274	(nech) queue=none;;
[253]	1275	(necriam) queue=SP;;
[1]	1276	(unics) queue=unics;;
	1277	esac
	1278	fi
	1279
	1280
	1281	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1282	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1283	# ERMITTELN
	1284	(( i = 0 ))
	1285	while (( i < iin ))
	1286	do
	1287	(( i = i + 1 ))
	1288	(( maxcycle = 0 ))
	1289
	1290	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1291	if [[ "${actionin[$i]}" = di ]]
	1292	then
	1293	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1294	# REM-MASCHINE AUSWERTEN
	1295	eval filename=${pathin[$i]}/${endin[$i]}
	1296	else
	1297	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1298	# REM-MASCHINE AUSWERTEN
	1299	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1300	fi
	1301
	1302	# PRUEFEN AUF VORHANDENSEIN
	1303	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1304	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1305	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1306	then
	1307	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1308	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1309	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1310	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1311	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1312	if [[ "${transin[$i]}" != "locopt" ]]
	1313	then
	1314	printf "\n\n +++ INPUT-file: "
	1315	if [[ "${extin[$i]}" = "" ]]
	1316	then
	1317	printf "\n $filename"
	1318	else
	1319	printf "\n $filename.${extin[$i]}"
	1320	fi
	1321	printf "\n does not exist\n"
	1322	locat=input; exit
	1323	else
	1324	transin[$i]="unavailable"
	1325	fi
	1326	else
	1327
	1328	# ZYKLUSNUMMER FESTSTELLEN
	1329	ls -1 -d $filename > filelist 2>/dev/null
	1330	ls -1 -d $filename.* >> filelist 2>/dev/null
	1331	while read zeile
	1332	do
	1333	cycle=$(print $zeile \| cut -f2 -d".")
	1334	if [[ "$cycle" = "$zeile" ]]
	1335	then
	1336	(( icycle = 0 ))
	1337	elif [[ "$cycle" = "${extin[$i]}" ]]
	1338	then
	1339	(( icycle = 0 ))
	1340	else
	1341	(( icycle = $cycle ))
	1342	fi
	1343	if (( icycle > maxcycle ))
	1344	then
	1345	(( maxcycle = icycle ))
	1346	file_to_be_used=$zeile
	1347	fi
	1348	done <filelist
	1349	rm filelist
	1350
	1351	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1352	if (( maxcycle > 0 ))
	1353	then
	1354	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1355	then
	1356	filename=${filename}.$maxcycle.${extin[$i]}
	1357	else
	1358	filename=${filename}.$maxcycle
	1359	fi
	1360	else
	1361	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1362	then
	1363	filename=${filename}.${extin[$i]}
	1364	fi
	1365	fi
	1366
	1367	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1368	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1369	absnamein[$i]=$filename
	1370	if (( maxcycle > 0 ))
	1371	then
	1372	if [[ "${actionin[$i]}" = di ]]
	1373	then
	1374	frelin[$i]=${endin[$i]}.$maxcycle
	1375	else
	1376	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1377	fi
	1378	else
	1379	if [[ "${actionin[$i]}" = di ]]
	1380	then
	1381	frelin[$i]=${endin[$i]}
	1382	else
	1383	frelin[$i]=${afname}${endin[$i]}
	1384	fi
	1385	fi
	1386
	1387	fi
	1388	done
	1389
	1390
	1391	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1392	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1393	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1394	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1395	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1396	(( i = 0 ))
	1397	while (( i < iout ))
	1398	do
	1399	(( i = i + 1 ))
	1400	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1401	then
[260]	1402	if [[ "${actionout[$i]}" = tr ]]
[1]	1403	then
	1404	actionout[$i]=""
[260]	1405	elif [[ "${actionout[$i]}" = trpe ]]
	1406	then
	1407	actionout[$i]=pe
[1]	1408	elif [[ "${actionout[$i]}" = tra ]]
	1409	then
	1410	actionout[$i]=a
	1411	fi
	1412	(( maxcycle = 0 ))
	1413	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1414	eval catalogname=${pathout[$i]}
	1415	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1416	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1417	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1418	then
	1419
	1420	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1421	if cat /dev/null > $filename
	1422	then
	1423	rm $filename
	1424	else
	1425
	1426	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1427	if [[ ! -d $catalogname ]]
	1428	then
	1429	if mkdir -p $catalogname
	1430	then
	1431	printf "\n\n *** directory:"
	1432	printf "\n $catalogname"
	1433	printf "\n was created\n"
	1434	else
	1435	printf "\n\n +++ OUTPUT-file:"
	1436	printf "\n $filename"
	1437	printf "\n cannot be created, because directory does not exist"
	1438	printf "\n and cannot be created either"
	1439	printf "\n"
	1440	locat=output ; exit
	1441	fi 2>/dev/null
	1442	else
	1443	printf "\n\n +++ OUTPUT-file:"
	1444	printf "\n $filename"
	1445	printf "\n cannot be created, although directory exists"
	1446	printf "\n"
	1447	locat=output ; exit
	1448	fi
	1449	fi 2>/dev/null
	1450	else
	1451
	1452	# ZYKLUSNUMMER FESTSTELLEN
	1453	ls -1 -d $filename > filelist 2>/dev/null
	1454	ls -1 -d $filename.* >> filelist 2>/dev/null
	1455	while read zeile
	1456	do
	1457	cycle=$(print $zeile \| cut -f2 -d".")
	1458	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1459	then
	1460	(( icycle = 1 ))
	1461	else
	1462	(( icycle = $cycle + 1 ))
	1463	fi
	1464	if (( icycle > maxcycle ))
	1465	then
	1466	(( maxcycle = icycle ))
	1467	fi
	1468	done <filelist
	1469	rm filelist
	1470	fi
	1471
	1472	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1473	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1474	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1475	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1476	if [[ "${actionout[$i]}" != a ]]
	1477	then
	1478	if (( maxcycle > 0 ))
	1479	then
	1480	filename=${filename}.$maxcycle
	1481	if cat /dev/null > $filename
	1482	then
	1483	rm $filename
	1484	else
	1485	printf "\n +++ OUTPUT-file:"
	1486	printf "\n $filename"
	1487	printf "\n cannot be created"
	1488	locat=output ; exit
	1489	fi
	1490	fi
	1491	else
	1492	(( maxcycle = maxcycle - 1 ))
	1493	if (( maxcycle > 0 ))
	1494	then
	1495	filename=${filename}.$maxcycle
	1496	fi
	1497	fi
	1498
	1499	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1500	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1501	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1502	pathout[$i]=$filename
	1503	if (( maxcycle > 0 ))
	1504	then
	1505	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1506	else
	1507	frelout[$i]=${fname}${endout[$i]}
	1508	fi
	1509
	1510	fi
	1511	done
	1512
	1513
[260]	1514	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1515	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1516	then
[260]	1517	if [[ "$dvr_inc" = "" ]]
[83]	1518	then
[260]	1519	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1520	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1521	locat=dvr; exit
[83]	1522	fi
[260]	1523	if [[ "$dvr_lib" = "" ]]
[83]	1524	then
[260]	1525	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1526	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1527	locat=dvr; exit
[83]	1528	fi
	1529	fi
	1530
	1531
[1]	1532	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1533	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1534	# UEBERSETZT ZU WERDEN)
	1535	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1536	then
	1537	printf "\n +++ neither main program nor executable defined"
	1538	locat=source; exit
	1539	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1540	then
	1541	printf "\n +++ main program as well as executable defined"
	1542	locat=source; exit
	1543	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1544	then
	1545	do_compile=false
	1546	fi
	1547
	1548
[191]	1549	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1550	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1551	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1552	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1553	then
	1554	rm -rf SOURCES_FOR_RUN_$fname
	1555	mkdir SOURCES_FOR_RUN_$fname
	1556	fi
	1557
	1558
[1]	1559	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1560	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1561	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1562	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1563	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1564	then
	1565
[5]	1566	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
	1567	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
[1]	1568
	1569
	1570	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
	1571	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
	1572	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
	1573	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
	1574	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
	1575	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
	1576	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
	1577	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
	1578	# GESAMMELT
[5]	1579	if [[ "$source_list" = WRITE_PERMIT ]]
[1]	1580	then
	1581
	1582	source_list=""
	1583	cd $source_path
	1584
	1585
	1586	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
	1587	Names=$(ls -1 *.f90 2>&1)
	1588	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
	1589	Names=$(ls -1 *.F90 2>&1)
	1590	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
	1591	Names=$(ls -1 *.F 2>&1)
	1592	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
	1593	Names=$(ls -1 *.f 2>&1)
	1594	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
	1595	Names=$(ls -1 *.c 2>&1)
	1596	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
	1597
	1598
	1599	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
	1600	for dateiname in $Filenames
	1601	do
	1602	if [[ -w $dateiname ]]
	1603	then
	1604	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
	1605	then
	1606	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1607	source_list=$source_list"$dateiname "
	1608	fi
	1609	fi
	1610	done
	1611
	1612	cd - > /dev/null
	1613
	1614
[5]	1615	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
	1616	then
	1617
	1618	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1619	source_list=""
	1620	cd $source_path
	1621
	1622
	1623	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1624	if [[ ! -d .svn ]]
	1625	then
	1626	printf "\n\n +++ source directory"
	1627	printf "\n \"$source_path\" "
	1628	printf "\n is not under control of \"subversion\"."
[306]	1629	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1630	fi
	1631
	1632
	1633	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1634	Filenames=""
[69]	1635	svn status > tmp_mrun
	1636	while read line
[5]	1637	do
	1638	firstc=`echo $line \| cut -c1`
	1639	if [[ $firstc = M \|\| $firstc = "?" ]]
	1640	then
	1641	Name=`echo "$line" \| cut -c8-`
	1642	extension=`echo $Name \| cut -d. -f2`
	1643	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1644	then
	1645	Filenames="$Filenames "$Name
	1646	fi
	1647	fi
[69]	1648	done < tmp_mrun
[5]	1649
	1650
	1651	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1652	for dateiname in $Filenames
	1653	do
	1654	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1655	source_list=$source_list"$dateiname "
	1656	done
	1657
	1658	cd - > /dev/null
	1659
	1660
[1]	1661	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1662	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1663	# VORHANDEN
[5]	1664	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1665	then
	1666
	1667	cd $source_path
	1668
	1669	for filename in $source_list
	1670	do
	1671
	1672	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1673	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1674	then
	1675	printf "\n +++ source code file: $filename"
	1676	printf "\n must not contain (\"/\") "
	1677	locat=source; exit
	1678	fi
	1679
	1680	if [[ ! -f $filename ]]
	1681	then
	1682	printf "\n +++ source code file: $filename"
	1683	printf "\n does not exist"
	1684	locat=source; exit
	1685	else
	1686	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1687	fi
	1688
	1689	done
	1690
	1691	cd - > /dev/null
	1692
	1693	fi
	1694
	1695
	1696	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1697	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1698	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1699	if [[ $restart_run != true ]]
[1]	1700	then
	1701
	1702	if [[ ! -f "$source_path/$mainprog" ]]
	1703	then
	1704	printf "\n\n +++ main program: $mainprog"
	1705	printf "\n does not exist in source directory"
	1706	printf "\n \"$source_path\"\n"
	1707	locat=source; exit
	1708	else
	1709	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1710	then
	1711	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1712	source_list=${mainprog}" $source_list"
	1713	fi
	1714	fi
	1715	fi
	1716
	1717
[211]	1718	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1719	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1720	if [[ "$restart_run" != true ]]
	1721	then
	1722	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1723	if [[ ! -f $makefile ]]
	1724	then
	1725	printf "\n +++ file \"$makefile\" does not exist"
	1726	locat=make; exit
	1727	else
	1728	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1729	fi
	1730	fi
	1731
	1732
[1]	1733	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1734	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1735	then
	1736
	1737	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1738	if [[ ! -d $add_source_path ]]
	1739	then
	1740	printf "\n\n +++ WARNING: additional source code directory"
	1741	printf "\n \"$add_source_path\" "
	1742	printf "\n does not exist or is not a directory."
	1743	printf "\n No source code will be used from this directory!\n"
	1744	add_source_path=""
	1745	sleep 3
	1746	else
	1747
	1748	cd $add_source_path
[211]	1749	found=false
[1]	1750
	1751	Names=$(ls -1 *.f90 2>&1)
	1752	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1753	Names=$(ls -1 *.F90 2>&1)
	1754	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1755	Names=$(ls -1 *.F 2>&1)
	1756	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1757	Names=$(ls -1 *.f 2>&1)
	1758	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1759	Names=$(ls -1 *.c 2>&1)
	1760	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1761
	1762	cd - > /dev/null
	1763	cd SOURCES_FOR_RUN_$fname
	1764
[211]	1765	# COPY MAKEFILE IF EXISTING
	1766	if [[ -f $add_source_path/Makefile ]]
	1767	then
	1768	printf "\n\n *** user Makefile from directory"
	1769	printf "\n \"$add_source_path\" is used \n"
	1770	sleep 1
	1771	cp $add_source_path/Makefile .
	1772	fi
	1773
[1]	1774	for dateiname in $AddFilenames
	1775	do
	1776	if [[ -f $dateiname ]]
	1777	then
	1778	printf "\n +++ source code file \"$dateiname\" found in additional"
	1779	printf "\n source code directory \"$add_source_path\" "
[211]	1780	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1781	printf "\n from directory \"$source_path\"."
[1]	1782	locat=source; exit
	1783	fi
	1784
	1785	cp $add_source_path/$dateiname .
	1786	source_list="$source_list $dateiname"
	1787
[211]	1788	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1789	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1790	then
	1791	printf "\n\n +++ user file \"$dateiname\" "
	1792	printf "\n is not listed in Makefile \n"
	1793	locat=source; exit
	1794	else
	1795
[1]	1796	# Default User-Interface von der Liste entfernen, falls Datei
	1797	# ein User-Interface enthaelt
[211]	1798	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1799	# then
	1800	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1801	# then
	1802	# rm -rf user_interface.f90
	1803	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1804	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1805	# printf "\n since a user-interface is found in file"
	1806	# printf "\n \"$add_source_path/$dateiname\" \n"
	1807	# sleep 3
	1808	# else
	1809	if [[ $found = false ]]
[1]	1810	then
[211]	1811	found=true
	1812	printf "\n\n *** following user file(s) added to the"
	1813	printf " files to be translated:\n "
[1]	1814	fi
[211]	1815	printf "$dateiname "
	1816	sleep 0.5
[1]	1817	fi
	1818	done
[211]	1819	[[ $found = true ]] && printf "\n"
[1]	1820	cd - > /dev/null
	1821	fi
	1822	fi
	1823
	1824
	1825	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1826	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1827	if [[ $restart_run != true && -n $package_list ]]
[1]	1828	then
	1829
	1830	cd $source_path
	1831
	1832	for package in $package_list
	1833	do
	1834
	1835	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1836
	1837	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1838	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1839	# LIEFERT
	1840	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1841
	1842
	1843	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1844	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1845	for source_list_name in $package_source_list
	1846	do
	1847	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1848	then
	1849
	1850	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1851	ending=`echo $source_list_name \| cut -f2 -d.`
	1852	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1853	then
	1854	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1855	source_list="$source_list $source_list_name"
	1856	fi
	1857	fi
	1858	done
	1859	done
	1860
	1861	cd - > /dev/null
	1862	fi
	1863
	1864
	1865	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1866	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1867	# if [[ "$restart_run" != true ]]
	1868	# then
	1869	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1870	# if [[ ! -f $makefile ]]
	1871	# then
	1872	# printf "\n +++ file \"$makefile\" does not exist"
	1873	# locat=make; exit
	1874	# else
	1875	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1876	# fi
	1877	# fi
[1]	1878
	1879	fi # do_compile=true
	1880
	1881
	1882	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1883	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1884	if [[ $do_compile = true ]]
	1885	then
	1886
	1887	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1888	# ZUSAMMENSETZEN
[83]	1889	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1890	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1891	then
[82]	1892	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1893	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1894	then
[82]	1895	cpp_options="$cpp_options -D__nec"
	1896	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1897	then
	1898	cpp_options="$cpp_options -D__lc"
[1]	1899	else
[82]	1900	cpp_options="$cpp_options -D__$localhost"
[1]	1901	fi
[83]	1902
	1903	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1904	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1905	then
[82]	1906	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1907	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1908	else
[82]	1909	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1910	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1911	fi
[83]	1912
	1913	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1914	if [[ -n $package_list ]]
	1915	then
	1916	for package in $package_list
	1917	do
	1918	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1919	then
	1920	if [[ $package != "dvrp_graphics+1PE" ]]
	1921	then
[82]	1922	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1923	else
[82]	1924	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1925	export use_seperate_pe_for_dvrp_output=true
	1926	fi
	1927	else
	1928	if [[ $package != "dvrp_graphics+1PE" ]]
	1929	then
[82]	1930	cpp_options="$cpp_options -D__$package"
[1]	1931	else
[82]	1932	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1933	export use_seperate_pe_for_dvrp_output=true
	1934	fi
	1935	fi
	1936	done
	1937	fi
[83]	1938
	1939	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1940	if [[ -n $cpp_opts ]]
	1941	then
	1942	for popts in $cpp_opts
	1943	do
[82]	1944	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1945	then
	1946	cpp_options="${cpp_options},-D__$popts=__$popts"
	1947	else
	1948	cpp_options="$cpp_options -D__$popts"
	1949	fi
[1]	1950	done
	1951	fi
	1952
	1953	else
	1954
	1955
	1956	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1957	if [[ $do_remote = false ]]
	1958	then
	1959	if [[ ! -f $executable ]]
	1960	then
	1961	printf "\n +++ executable file: $executable"
	1962	printf "\n does not exist"
	1963	locat=executable; exit
	1964	fi
	1965	fi
	1966	fi
	1967
	1968
	1969	# JOBMODUS FESTSTELLEN
[635]	1970	if [[ "$ENVIRONMENT" = BATCH ]]
[1]	1971	then
	1972	jobmo=BATCH
	1973	else
	1974	jobmo=INTERACTIVE
	1975	fi
	1976
	1977
[635]	1978	# no interactive runs on lctit
	1979	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
	1980	then
	1981	printf "\n +++ no interactive runs allowed on host \"$host\" "
	1982	printf "\n please submit batch job using mrun option \"-b\" \n"
	1983	locat=normal; exit
	1984	fi
	1985
	1986
[1]	1987	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1988	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1989	if [[ "$compiler_name" = "" ]]
	1990	then
[82]	1991
[220]	1992	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1993	locat=compiler_name; exit
	1994
[1]	1995	fi
	1996
	1997
[251]	1998	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	1999	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	2000
	2001
	2002
	2003	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	2004	kennung=$RANDOM
	2005	if [[ "$tmp_user_catalog" = "" ]]
	2006	then
[312]	2007	if [[ $localhost = ibmh ]]
[1]	2008	then
[312]	2009	tmp_user_catalog=$SCRATCH
[1]	2010	elif [[ $localhost = nech ]]
	2011	then
	2012	tmp_user_catalog=$WRKSHR
	2013	else
	2014	tmp_user_catalog=/tmp
	2015	fi
	2016	fi
	2017	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	2018
	2019
	2020	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	2021	# BESTIMMEN
	2022	if [[ "$tmp_data_catalog" = "" ]]
	2023	then
[622]	2024	if [[ $localhost = nech ]]
[1]	2025	then
	2026	tmp_data_catalog=$WRKSHR/mrun_restart_data
	2027	else
	2028	tmp_data_catalog=/tmp/mrun_restart_data
	2029	fi
	2030	fi
	2031
	2032
	2033	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	2034	# ERSETZEN
	2035	if [[ $do_remote = false && $do_compile = true ]]
	2036	then
	2037	eval fopts=\"$fopts\"
	2038	eval lopts=\"$lopts\"
	2039	fi
	2040
	2041
	2042
	2043	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	2044	fopts="$fopts $netcdf_inc $dvr_inc"
	2045	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	2046	ROPTS="$ropts"
[717]	2047	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
[1]	2048	then
	2049	XOPT="-X $numprocs"
	2050	fi
	2051
	2052
	2053
	2054	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	2055	# GRAMM BENOETIGT
	2056	done=false
	2057	while [[ $done = false ]]
	2058	do
	2059	cputime=$cpumax
	2060	if (( $cputime == 0 ))
	2061	then
[246]	2062	if [[ $do_batch = true ]]
	2063	then
	2064	printf "\n +++ cpu-time is undefined"
	2065	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	2066	printf "\n >>> "
	2067	read cputime 1>/dev/null 2>&1
	2068	else
	2069	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	2070	fi
[1]	2071	else
	2072	done=true
	2073	fi
	2074	cpumax=$cputime
	2075	done
	2076
	2077	(( minuten = cputime / 60 ))
	2078	(( sekunden = cputime - minuten * 60 ))
	2079
	2080
	2081	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	2082	if [[ $do_batch = true ]]
	2083	then
	2084	done=false
	2085	while [[ $done = false ]]
	2086	do
	2087	if (( memory == 0 ))
	2088	then
	2089	printf "\n +++ memory demand is undefined"
	2090	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	2091	printf "\n >>> "
	2092	read memory 1>/dev/null 2>&1
	2093	else
	2094	done=true
	2095	fi
	2096	done
	2097	fi
	2098
	2099
	2100	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	2101	if [[ $do_remote = true && -z $remote_username ]]
	2102	then
	2103	while [[ -z $remote_username ]]
	2104	do
	2105	printf "\n +++ username on remote host \"$host\" is undefined"
	2106	printf "\n >>> Please type username:"
	2107	printf "\n >>> "
	2108	read remote_username
	2109	done
	2110	mc="$mc -u$remote_username"
	2111	fi
	2112
[221]	2113
[493]	2114	# set module load command and export for subjob
	2115	if [[ "$modules" != "" ]]
	2116	then
[678]	2117	if [[ $host = lctit ]]
	2118	then
	2119	export module_calls=". $modules"
	2120	else
	2121	export module_calls="module load ${modules};"
	2122	fi
[493]	2123	fi
	2124
[683]	2125	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
[562]	2126	if [[ $host = lcsgib \|\| $host = lcsgih ]]
[555]	2127	then
	2128	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
	2129	then
[562]	2130	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
[555]	2131	fi
[721]	2132	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
	2133	# then
	2134	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
	2135	# echo "*** module_calls = $module_calls"
	2136	# fi
[555]	2137	fi
[493]	2138
[555]	2139
[221]	2140	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2141	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2142	then
[493]	2143	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
	2144	then
	2145	mpilib=mpt
	2146	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
	2147	then
	2148	mpilib=mvapich
[738]	2149	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
	2150	then
	2151	mpilib=impi
[493]	2152	fi
[221]	2153	fi
	2154
	2155
	2156
[1]	2157	###########################################################################
	2158	# HEADER-AUSGABE
	2159	###########################################################################
	2160
	2161
	2162	calltime=$(date)
	2163	printf "\n"
	2164	# [[ $silent = false ]] && clear
	2165	printf "#--------------------------------------------------------------# \n"
	2166	printf "\| $version$calltime \| \n"
	2167	printf "\| \| \n"
	2168	spalte1="called on:"; spalte2=$localhost_realname
	2169	printf "\| $spalte1$spalte2 \| \n"
	2170	if [[ $local_compile = false ]]
	2171	then
	2172	if [[ $do_remote = true ]]
	2173	then
	2174	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2175	else
	2176	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2177	fi
	2178	else
	2179	spalte1="compiling test only!"; spalte2=""
	2180	fi
	2181	printf "\| $spalte1$spalte2 \| \n"
	2182	if [[ -n $numprocs ]]
	2183	then
	2184	spalte1="number of PEs:"; spalte2=$numprocs
	2185	printf "\| $spalte1$spalte2 \| \n"
	2186	fi
	2187	if [[ -n $tasks_per_node ]]
	2188	then
	2189	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	2190	printf "\| $spalte1$spalte2 \| \n"
	2191	fi
[622]	2192	if [[ $use_openmp = true ]]
[1]	2193	then
	2194	spalte1="threads per task:"; spalte2="$threads_per_task"
	2195	printf "\| $spalte1$spalte2 \| \n"
	2196	fi
	2197	printf "\| \| \n"
	2198	if [[ $do_compile = true ]]
	2199	then
[475]	2200	if [[ "$mopts" != "" ]]
	2201	then
[493]	2202	spalte1="make options:"; spalte2=$mopts
[475]	2203	printf "\| $spalte1$spalte2 \| \n"
	2204	zeile=$(echo "$mopts" \| cut -c41-)
	2205	while [[ "$zeile" != "" ]]
	2206	do
	2207	spalte1=""
	2208	spalte2=$zeile
	2209	printf "\| $spalte1$spalte2 \| \n"
	2210	zeile=$(echo "$zeile" \| cut -c41-)
	2211	done
	2212	fi
	2213
[493]	2214	spalte1="cpp directives:"; spalte2=$cpp_options
[1]	2215	printf "\| $spalte1$spalte2 \| \n"
[82]	2216	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2217	while [[ "$zeile" != "" ]]
	2218	do
	2219	spalte1=""
	2220	spalte2=$zeile
	2221	printf "\| $spalte1$spalte2 \| \n"
	2222	zeile=$(echo "$zeile" \| cut -c41-)
	2223	done
	2224
[493]	2225	spalte1="compiler options:"; spalte2="$fopts"
[1]	2226	printf "\| $spalte1$spalte2 \| \n"
[82]	2227	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2228	while [[ "$zeile" != "" ]]
	2229	do
	2230	spalte1=""
	2231	spalte2=$zeile
	2232	printf "\| $spalte1$spalte2 \| \n"
	2233	zeile=$(echo "$zeile" \| cut -c41-)
	2234	done
	2235
[493]	2236	spalte1="linker options:"; spalte2=$lopts
[1]	2237	printf "\| $spalte1$spalte2 \| \n"
[82]	2238	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2239	while [[ "$zeile" != "" ]]
	2240	do
	2241	spalte1=""
	2242	spalte2=$zeile
	2243	printf "\| $spalte1$spalte2 \| \n"
	2244	zeile=$(echo "$zeile" \| cut -c41-)
	2245	done
	2246
[493]	2247	spalte1="modules to be load:"; spalte2=$modules
	2248	printf "\| $spalte1$spalte2 \| \n"
	2249	zeile=$(echo "$modules" \| cut -c41-)
	2250	while [[ "$zeile" != "" ]]
	2251	do
	2252	spalte1=""
	2253	spalte2=$zeile
	2254	printf "\| $spalte1$spalte2 \| \n"
	2255	zeile=$(echo "$zeile" \| cut -c41-)
	2256	done
	2257
[1]	2258	spalte1="main program":; spalte2=$mainprog
	2259	printf "\| $spalte1$spalte2 \| \n"
	2260	else
	2261	spalte1=executable:; spalte2=$executable
	2262	printf "\| $spalte1$spalte2 \| \n"
	2263	fi
	2264	printf "\| \| \n"
	2265	spalte1="base name of files":; spalte2=$fname
	2266	printf "\| $spalte1$spalte2 \| \n"
	2267	if [[ $fname != $afname ]]
	2268	then
	2269	spalte1="base name of input files":; spalte2=$afname
	2270	printf "\| $spalte1$spalte2 \| \n"
	2271	fi
	2272	spalte1="INPUT control list":; spalte2=$input_list
	2273	printf "\| $spalte1$spalte2 \| \n"
	2274	spalte1="OUTPUT control list":; spalte2=$output_list
	2275	printf "\| $spalte1$spalte2 \| \n"
	2276
	2277	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2278	then
	2279	spalte1="memory demand / PE":; spalte2="$memory MB"
	2280	printf "\| $spalte1$spalte2 \| \n"
	2281	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2282	printf "\| $spalte1$spalte2 \| \n"
	2283	fi
	2284
	2285	if [[ $do_compile = true ]]
	2286	then
	2287	printf "\| \| \n"
	2288	printf "\| Files to be compiled: \| \n"
	2289	zeile=$source_list
	2290	while [[ "$zeile" != "" ]]
	2291	do
	2292	spalte3=$zeile
	2293	printf "\| $spalte3 \| \n"
	2294	zeile=$(echo "$zeile" \| cut -c61-)
	2295	done
	2296	fi
	2297	printf "#--------------------------------------------------------------#"
	2298
	2299
	2300
	2301	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2302	if [[ $do_trace = true ]]
	2303	then
	2304	(( i = 0 ))
	2305	while (( i < iin ))
	2306	do
	2307	(( i = i + 1 ))
	2308	if (( i == 1 ))
	2309	then
	2310	printf "\n\n >>> INPUT-file assignments:\n"
	2311	fi
	2312	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2313	done
	2314	(( i = 0 ))
	2315	while (( i < iout ))
	2316	do
	2317	(( i = i + 1 ))
	2318	if (( i == 1 ))
	2319	then
	2320	printf "\n\n >>> OUTPUT-file assignments:\n"
	2321	fi
	2322	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2323	done
	2324	(( i = 0 ))
	2325	while (( i < iic ))
	2326	do
	2327	(( i = i + 1 ))
	2328	if (( i == 1 ))
	2329	then
	2330	printf "\n\n >>> INPUT-commands:\n"
	2331	fi
	2332	printf "\n ${in_command[$i]}"
	2333	done
	2334	(( i = 0 ))
	2335	while (( i < ioc ))
	2336	do
	2337	(( i = i + 1 ))
	2338	if (( i == 1 ))
	2339	then
	2340	printf "\n\n >>> OUTPUT-commands:\n"
	2341	fi
	2342	printf "\n ${out_command[$i]}"
	2343	done
	2344	fi
	2345
	2346
	2347	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2348	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2349	then
	2350	antwort=dummy
	2351	printf "\n\n"
	2352	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2353	do
	2354	printf " >>> everything o.k. (y/n) ? "
	2355	read antwort
	2356	done
	2357	if [[ $antwort = n \|\| $antwort = N ]]
	2358	then
	2359	locat=user_abort; (( iec = 0 )); exit
	2360	fi
	2361	if [[ $do_batch = true ]]
	2362	then
	2363	printf " >>> batch-job will be created and submitted"
	2364	else
	2365	if [[ $local_compile = false ]]
	2366	then
	2367	printf " >>> MRUN will now continue to execute on this machine"
	2368	else
	2369	printf " >>> a test compilation will now be carried out on this machine"
	2370	fi
	2371	fi
	2372	fi
	2373
	2374
	2375
	2376
	2377	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2378	# CHENDE AKTIONEN DURCHGEFUEHRT
	2379	if [[ $do_batch = false ]]
	2380	then
	2381
	2382
	2383	# TEMPORAEREN KATALOG ERZEUGEN
	2384	mkdir -p $TEMPDIR
	2385	chmod go+rx $TEMPDIR
	2386	tmpcreate=true
	2387
[493]	2388	# set striping on lustre file system
	2389	# if [[ $localhost = lcsgih ]]
	2390	# then
	2391	# lfs setstripe -s 8192k -c 16 $TEMPDIR
	2392	# lfs getstripe $TEMPDIR
	2393	# fi
[1]	2394
[493]	2395
[1]	2396	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2397	# TEMPORAERES VERZEICHNIS KOPIEREN
	2398	if [[ $do_compile = true ]]
	2399	then
	2400
	2401	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2402	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2403	if [[ $localhost = nech ]]
	2404	then
	2405	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2406	if mkdir -p $TEMPDIR_COMPILE
	2407	then
	2408	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2409	printf "\n is generated as temporary directory for cross compiling\n"
	2410	else
	2411	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2412	printf "\n needed for cross compilation failed"
	2413	locat=compile
	2414	exit
	2415	fi
	2416	else
	2417	TEMPDIR_COMPILE=$TEMPDIR
	2418	fi
	2419
	2420
[82]	2421	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2422	line=""
	2423	grep "%depository_path" $config_file > tmp_mrun
	2424	while read line
	2425	do
	2426	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2427	then
	2428	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2429	then
[82]	2430	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2431	fi
[82]	2432	fi
	2433	done < tmp_mrun
[1]	2434
[82]	2435	line=""
	2436	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2437	while read line
	2438	do
	2439	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2440	then
[211]	2441	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2442	then
	2443	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2444	fi
[1]	2445	fi
[82]	2446	done < tmp_mrun
[1]	2447
[82]	2448	if [[ "$local_depository_path" = "" ]]
	2449	then
	2450	if [[ "$global_depository_path" != "" ]]
[1]	2451	then
[82]	2452	local_depository_path=$global_depository_path
[1]	2453	else
[82]	2454	printf "\n\n +++ no depository path found in configuration file"
	2455	printf "\n for local host \"$localhost\" "
	2456	printf "\n please set \"\%depository_path\" in configuration file\n"
	2457	locat=config_file; exit
[1]	2458	fi
[82]	2459	fi
	2460	eval local_depository_path=$local_depository_path
[215]	2461	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2462	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2463
[215]	2464
[82]	2465	basename=`print $mainprog \| cut -f1 -d"."`
	2466	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2467	if [[ ! -f $make_depository ]]
	2468	then
	2469	printf "\n"
	2470	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2471	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2472	else
	2473	cp $make_depository $TEMPDIR_COMPILE
[1]	2474	cd $TEMPDIR_COMPILE
[82]	2475	tar -xf $make_depository > /dev/null 2>&1
[1]	2476	cd - > /dev/null
	2477	fi
[82]	2478
	2479	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2480
[1]	2481	else
[475]	2482
[1]	2483	cp $executable ${TEMPDIR}/a.out
[475]	2484
[1]	2485	fi
	2486
	2487
	2488	# WECHSEL IN TEMPORAEREN KATALOG
[475]	2489	cd $TEMPDIR
[1]	2490	printf "\n *** changed to temporary directory: $TEMPDIR"
	2491
	2492
	2493	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2494	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2495	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2496	# ERMITTELN
	2497	(( i = 0 ))
	2498	while (( i < iout ))
	2499	do
	2500	(( i = i + 1 ))
	2501	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2502	then
	2503	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2504	else
	2505	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2506	fi
	2507	done
	2508
	2509
	2510	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2511	if [[ $do_compile = true ]]
	2512	then
	2513
	2514
	2515	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2516	printf "\n\n\n *** compilation starts \n$striche\n"
	2517	printf " *** compilation with make using following options:\n"
[211]	2518	printf " make depository: $make_depository"
[475]	2519	if [[ "$mopts" != "" ]]
	2520	then
	2521	printf " make options: $mopts\n"
	2522	fi
[82]	2523	printf " compilername: $compiler_name\n"
[475]	2524	printf " compiler options: $fopts\n"
[493]	2525	printf " preprocessor directives: $cpp_options \n"
	2526	printf " linker options: $lopts \n"
	2527	if [[ "$modules" != "" ]]
	2528	then
	2529	printf " modules to be load: $modules \n"
	2530	fi
[82]	2531	printf " source code files: $source_list \n"
	2532
	2533	if [[ $localhost = nech ]]
[1]	2534	then
[493]	2535	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[82]	2536	cp $TEMPDIR_COMPILE/a.out .
	2537	[[ $? != 0 ]] && compile_error=true
	2538	rm -rf $TEMPDIR_COMPILE
[312]	2539	elif [[ $localhost = ibmh ]]
	2540	then
[325]	2541	printf " compiler is called via ssh on \"plogin1\" \n"
[493]	2542	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[312]	2543	[[ ! -f a.out ]] && compile_error=true
	2544	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[197]	2545	elif [[ $localhost = lcsgib ]]
	2546	then
[540]	2547	printf " compiler is called via ssh on \"bicegate0\" \n"
	2548	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2549	[[ ! -f a.out ]] && compile_error=true
	2550	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2551	elif [[ $localhost = lcsgih ]]
	2552	then
[738]	2553	printf " compiler is called via ssh on \"hicegate0\" \n"
	2554	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2555	[[ ! -f a.out ]] && compile_error=true
	2556	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2557	else
[544]	2558	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
[493]	2559	[[ "$module_calls" != "" ]] && eval $module_calls
[475]	2560	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
[82]	2561	fi
[1]	2562
	2563	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2564	then
	2565	printf "\n +++ error occured while compiling or linking"
	2566	locat=compile
[181]	2567
[182]	2568	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2569	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2570	# then
[181]	2571	exit
[197]	2572	# else
	2573	# locat=normal
	2574	# fi
[1]	2575	else
	2576	printf "$striche\n *** compilation finished \n"
	2577	fi
	2578	fi
	2579
	2580
	2581	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2582	if [[ $local_compile = true ]]
	2583	then
	2584	cd $HOME
	2585	rm -rf $TEMPDIR
	2586	locat=local_compile; exit
	2587	fi
	2588
	2589
	2590	# BEREITSTELLEN DER INPUT-DATEIEN
	2591	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2592	(( i = 0 ))
	2593	while (( i < iin ))
	2594	do
	2595	(( i = i + 1 ))
	2596	if (( i == 1 ))
	2597	then
	2598	printf "\n\n *** providing INPUT-files:\n$striche"
	2599	fi
	2600
	2601
	2602	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2603	if [[ "${transin[$i]}" = unavailable ]]
	2604	then
	2605	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2606	then
	2607	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2608	printf "\n is not available!"
	2609	else
	2610	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2611	printf "\n is not available!"
	2612	fi
	2613	continue
	2614	fi
	2615
	2616	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2617	files_for_pes=false; datentyp=file
	2618	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2619	then
	2620	files_for_pes=true; datentyp=directory
	2621	actionin[$i]=""
	2622	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2623	then
	2624	actionin[$i]=""
	2625	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2626	then
	2627	files_for_pes=true; datentyp=directory
	2628	actionin[$i]="ar"
	2629	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2630	then
	2631	actionin[$i]="ar"
	2632	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2633	then
	2634	files_for_pes=true; datentyp=directory
	2635	actionin[$i]="fl"
	2636	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2637	then
	2638	actionin[$i]="fl"
	2639	fi
	2640
	2641	if [[ $files_for_pes = true ]]
	2642	then
	2643	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2644	else
	2645	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2646	fi
	2647
	2648	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2649	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2650	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2651	# SERVER ZU HOLEN
	2652	if [[ "${actionin[$i]}" = fl ]]
	2653	then
	2654	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2655	if [[ $files_for_pes = false ]]
	2656	then
	2657	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2658	then
	2659	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2660	got_tmp[$i]=true
	2661	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2662	then
	2663	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2664	printf "\n *** trying to use backup copy in \"$WORK\" "
	2665	cp $WORK/${frelin[$i]} ${localin[$i]}
	2666	else
	2667	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2668	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2669	printf "\n *** trying to get copy from archive"
	2670	actionin[$i]=ar
	2671	fi
	2672	else
	2673	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2674	then
	2675	mkdir ${localin[$i]}
[149]	2676	cd $tmp_data_catalog/${frelin[$i]}
	2677	for file in $(ls *)
	2678	do
	2679	ln $file $TEMPDIR/${localin[$i]}
	2680	done
	2681	cd $TEMPDIR
[1]	2682	got_tmp[$i]=true
	2683	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2684	then
	2685	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2686	printf "\n *** trying to use backup copy in \"$WORK\" "
	2687	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2688	else
	2689	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2690	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2691	printf "\n *** trying to get copy from archive"
	2692	actionin[$i]=ar
	2693	fi
	2694	fi
	2695	fi
	2696
	2697
	2698	# DATEI LIEGT AUF ARCHIV-SERVER
	2699	if [[ "${actionin[$i]}" = ar ]]
	2700	then
	2701
	2702	if [[ $files_for_pes = false ]]
	2703	then
	2704	printf "\n file will be restored from archive-system ($archive_system)!"
	2705	else
	2706	printf "\n directory will be restored from archive-system ($archive_system)!"
	2707	fi
	2708
	2709	file_restored=false
	2710
	2711	if [[ $archive_system = asterix ]]
	2712	then
	2713	do_stagein=true
	2714	(( stagein_anz = 0 ))
	2715	while [[ $do_stagein = true ]]
	2716	do
	2717	if [[ $files_for_pes = false ]]
	2718	then
	2719	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2720	else
	2721	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2722	fi
	2723	cat STAGEIN_OUTPUT
	2724	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2725	then
	2726	file_restored=true
	2727	do_stagein=false
	2728	else
	2729	(( stagein_anz = stagein_anz + 1 ))
	2730	if (( stagein_anz == 10 ))
	2731	then
	2732	printf "\n +++ stagein stoped after 10 tries"
	2733	locat=stage
	2734	exit
	2735	fi
	2736	printf "\n +++ restoring from archive failed, trying again:"
	2737	sleep 900
	2738	fi
	2739	done
	2740	elif [[ $archive_system = DMF ]]
	2741	then
	2742	if [[ $files_for_pes = false ]]
	2743	then
	2744	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	2745	locat=DMF
	2746	exit
	2747	else
	2748	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	2749	cp -r $ARCHIVE/${frelin[$i]} $PWD
	2750	file_restored=true
	2751	fi
	2752	elif [[ $archive_system = tivoli ]]
	2753	then
	2754	if [[ $files_for_pes = false ]]
	2755	then
[399]	2756	if [[ $localhost = lcsgih ]]
[1]	2757	then
[399]	2758	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2759	else
[399]	2760	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2761	fi
	2762	else
	2763	(( inode = 0 ))
	2764	while (( inode < nodes ))
	2765	do
[399]	2766	if [[ $localhost = lcsgih ]]
[1]	2767	then
[399]	2768	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2769	else
[399]	2770	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2771	fi
	2772	(( inode = inode + 1 ))
	2773	done
	2774	fi
	2775	file_restored=true
	2776	elif [[ $archive_system = ut ]]
	2777	then
	2778	if [[ $files_for_pes = false ]]
	2779	then
	2780	cp $UT/${frelin[$i]} .
	2781	else
	2782	(( inode = 0 ))
	2783	while (( inode < nodes ))
	2784	do
	2785	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	2786	(( inode = inode + 1 ))
	2787	done
	2788	fi
	2789	file_restored=true
	2790	else
	2791	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	2792	locat=rearchive
	2793	exit
	2794	fi
	2795
	2796	if [[ $file_restored = true ]]
	2797	then
	2798
	2799	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	2800	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	2801	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	2802	if [[ $files_for_pes = false ]]
	2803	then
	2804	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	2805	else
	2806	mkdir $tmp_data_catalog/${frelin[$i]}
	2807	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	2808	fi
	2809	got_tmp[$i]=true
	2810
	2811	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	2812	mv ${frelin[$i]} ${localin[$i]}
	2813
	2814	fi
	2815	fi
	2816
	2817
	2818	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	2819	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	2820	then
	2821
	2822	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	2823	then
	2824
	2825	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	2826	printf "\n file will be provided for $numprocs processors"
	2827	mkdir ${localin[$i]}
	2828	ival=$numprocs
	2829	(( ii = 0 ))
	2830	while (( ii <= ival-1 ))
	2831	do
	2832	if (( ii < 10 ))
	2833	then
	2834	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	2835	elif (( ii < 100 ))
	2836	then
	2837	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	2838	elif (( ii < 1000 ))
	2839	then
	2840	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	2841	else
	2842	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	2843	fi
	2844	(( ii = ii + 1 ))
	2845	done
	2846
	2847	else
	2848
	2849	if [[ $files_for_pes = true ]]
	2850	then
	2851
	2852	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	2853	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	2854	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	2855	# PER MOVE UMBENANNT WERDEN
	2856	printf "\n providing $numprocs files for the respective processors"
	2857	mkdir ${localin[$i]}
[183]	2858	if [[ $link_local_input = true ]]
	2859	then
	2860	printf " using ln -f\n"
	2861	cd ${absnamein[$i]}
	2862	for file in $(ls *)
	2863	do
	2864	ln -f $file ${localin[$i]}
	2865	done
	2866	cd $TEMPDIR
	2867	fi
	2868	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	2869	if [[ ! -f "${localin[$i]}/_0000" ]]
	2870	then
	2871	if [[ $link_local_input = true ]]
	2872	then
	2873	printf " ln failed for .../_0000, using cp...\n"
	2874	fi
	2875	cp -r ${absnamein[$i]}/* ${localin[$i]}
	2876	fi
[1]	2877
	2878	else
	2879	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	2880	if [[ $link_local_input = true ]]
	2881	then
	2882	printf " using ln -f\n"
	2883	ln -f ${absnamein[$i]} ${localin[$i]}
	2884	fi
	2885	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	2886	if [[ ! -f "${localin[$i]}" ]]
	2887	then
	2888	if [[ $link_local_input = true ]]
	2889	then
	2890	printf " ln failed, using cp...\n"
	2891	fi
	2892	cp ${absnamein[$i]} ${localin[$i]}
	2893	fi
[1]	2894	fi
	2895	fi
	2896	fi
	2897
	2898	done
	2899	if (( i != 0 ))
	2900	then
	2901	printf "\n$striche\n *** all INPUT-files provided \n"
	2902	fi
	2903
	2904
	2905	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	2906	(( i = 0 ))
	2907	while (( i < iic ))
	2908	do
	2909	(( i = i + 1 ))
	2910	if (( i == 1 ))
	2911	then
	2912	printf "\n\n *** execution of INPUT-commands:\n$striche"
	2913	fi
	2914	printf "\n >>> ${in_command[$i]}"
	2915	eval ${in_command[$i]}
	2916	if (( i == iic ))
	2917	then
	2918	printf "\n$striche\n"
	2919	fi
	2920	done
	2921
	2922
	2923	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	2924	cpurest=${cpumax}.
	2925
	2926
[260]	2927	# START DVR STREAMING SERVER
	2928	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	2929	then
	2930	if [[ "$dvr_server" != "" ]]
	2931	then
	2932
	2933	printf "\n\n *** preparing the dvr streaming server configuration file"
	2934
	2935	# Check, if a dvr server is already running
	2936	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	2937	if [[ "$running_dvrserver_id" != "" ]]
	2938	then
	2939
[261]	2940	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	2941	printf "\n This server is used instead starting a new one!"
[261]	2942	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	2943
	2944	else
	2945
	2946	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	2947	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	2948	then
	2949	cp ${PALM_BIN}/.dvrserver.config .
	2950
	2951	# Entering the BASEDIR, UID and GID into this file
	2952	user_id=`id -u`
	2953	group_id=`id -g`
	2954	# & is needed as seperator, because TEMPDIR contains /
	2955	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	2956	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	2957	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	2958	mv .dvrserver.3 .dvrserver.config
	2959	rm .dvrserver.1 .dvrserver.2
	2960
	2961	# Start dvr server in background, get his id and print on terminal
	2962	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	2963	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	2964	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	2965	local_dvrserver_running=.TRUE.
	2966	else
	2967	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	2968	printf "\n \"$PALM_BIN\" "
	2969	locat=dvr
	2970	exit
	2971	fi
	2972
	2973	fi
	2974
	2975	else
	2976	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	2977	fi
	2978	fi
	2979
	2980
	2981	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	2982	# LESEN VON PALM)
	2983	cat > ENVPAR << %%END%%
	2984	&envpar run_identifier = '$fname', host = '$localhost',
	2985	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2986	maximum_cpu_time_allowed = ${cpumax}.,
	2987	revision = '$global_revision',
	2988	local_dvrserver_running = $local_dvrserver_running /
	2989
	2990	%%END%%
	2991
	2992
[1]	2993	# PROGRAMMSTART
	2994	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	2995	PATH=$PATH:$TEMPDIR
	2996
[359]	2997	# MPI debug option (argument checking, slows down execution due to increased latency)
	2998	if [[ "$mpi_debug" = true ]]
	2999	then
	3000	export MPI_CHECK_ARGS=1
	3001	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	3002	fi
	3003
[693]	3004	if [[ "$totalview" = true ]]
	3005	then
	3006	printf "\n *** totalview debugger will be used"
	3007	tv_opt="-tv"
	3008	else
	3009	tv_opt=""
	3010	fi
	3011
[1]	3012	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	3013	then
	3014	if [[ "$ENVIRONMENT" = BATCH ]]
	3015	then
[211]	3016	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	3017	then
	3018	printf "\n +++ debug is allowed in interactive mode only"
	3019	locat=debug
	3020	exit
	3021	fi
[1]	3022	fi
[5]	3023	if [[ $localhost = decalpha ]]
[1]	3024	then
	3025	dxladebug a.out
[622]	3026	elif [[ $localhost = ibmh ]]
[1]	3027	then
	3028
	3029	# SETUP THE IBM MPI ENVIRONMENT
	3030	export MP_SHARED_MEMORY=yes
	3031	export AIXTHREADS_SCOPE=S
	3032	export OMP_NUM_THREADS=$threads_per_task
	3033	export AUTHSTATE=files
	3034	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3035
	3036	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	3037	export MP_ADAPTER_USE=shared
	3038	export MP_CPU_USE=multiple
	3039	export MP_TIMEOUT=1200
	3040
	3041	unset MP_TASK_AFFINITY
	3042
	3043	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	3044	#(( ii = 1 ))
	3045	#while (( ii <= $numprocs ))
	3046	#do
	3047	# echo $localhost_realname >> hostfile
	3048	# (( ii = ii + 1 ))
	3049	#done
	3050	#export MP_HOSTFILE=hostfile
	3051
	3052	if [[ "$LOADLBATCH" = yes ]]
	3053	then
	3054	totalview poe a.out $ROPTS
	3055	else
	3056	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3057	export TVDSVRLAUNCHCMD=ssh
	3058	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3059	fi
[211]	3060	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	3061	then
	3062	# CURRENTLY NO DEBUGGER ON LCSGI
	3063	if [[ $run_coupled_model = true ]]
	3064	then
	3065	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	3066	locat=debug
	3067	exit
[223]	3068	else
	3069	echo "no_coupling" > runfile_atmos
[211]	3070	fi
	3071	(( ii = $numprocs / $threads_per_task ))
	3072	export OMP_NUM_THREADS=$threads_per_task
	3073	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3074	if [[ $threads_per_task != 1 ]]
	3075	then
	3076	printf "\n threads per task: $threads_per_task"
	3077	fi
	3078	printf "\n\n"
[223]	3079	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3080	then
	3081	# export MPI_LAUNCH_TIMEOUT=360
	3082	if [[ "$totalview" = true ]]
	3083	then
	3084	printf "\n running totalview debugger"
[693]	3085	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
[223]	3086	else
	3087	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3088	fi
	3089	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3090	then
	3091	# ulimit -s 300000 # A too large stack size causes problems
	3092	# export MV2_NUM_PORTS=2
	3093	# export MV2_CPU_MAPPING=0:1:2:3
[362]	3094	if [[ "$totalview" = true ]]
	3095	then
	3096	printf "\n running totalview debugger"
[693]	3097	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
[362]	3098	else
	3099	mpiexec ./a.out $ROPTS < runfile_atmos
	3100	fi
[223]	3101	fi
[1]	3102	else
	3103	printf "\n +++ no debug available on \"$localhost\" "
	3104	printf "\n or not implemented in mrun so far"
	3105	locat=debug
	3106	exit
	3107	fi
[622]	3108
	3109	# end debug mode
[1]	3110	else
[622]	3111
	3112	# normal execution
[1]	3113	if [[ -n $numprocs ]]
	3114	then
	3115	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	3116	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	3117	then
	3118	# SETUP THE IBM MPI ENVIRONMENT
[693]	3119	if [[ $host != ibmh && $host != ibmkisti ]]
[312]	3120	then
	3121	export MP_SHARED_MEMORY=yes
	3122	export AIXTHREAD_SCOPE=S
	3123	export OMP_NUM_THREADS=$threads_per_task
	3124	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	3125	export AUTHSTATE=files
	3126	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3127	# export MP_PRINTENV=yes
[1]	3128
[312]	3129	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	3130	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	3131	export MP_WAIT_MODE=poll
	3132	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	3133	fi
[693]	3134
	3135	if [[ $host = ibmkisti ]]
	3136	then
	3137	export LANG=en_US
	3138	export MP_SHARED_MEMORY=yes
[696]	3139	if [[ $threads_per_task = 1 ]]
	3140	then
	3141	export MP_SINGLE_THREAD=yes
	3142	export MEMORY_AFFINITY=MCM
	3143	else
	3144	export OMP_NUM_THREADS=$threads_per_task
	3145	fi
[693]	3146	fi
	3147
[1]	3148	if [[ "$LOADLBATCH" = yes ]]
	3149	then
	3150	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	3151	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3152	then
[102]	3153	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3154	else
[343]	3155	if [[ $run_coupled_model = false ]]
	3156	then
	3157	if [[ "$ocean_file_appendix" = true ]]
	3158	then
	3159	echo "precursor_ocean" > runfile_atmos
	3160	else
	3161	echo "precursor_atmos" > runfile_atmos
	3162	fi
	3163	else
	3164	(( iia = $numprocs_atmos / $threads_per_task ))
	3165	(( iio = $numprocs_ocean / $threads_per_task ))
	3166	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3167	printf "\n using $coupled_mode coupling"
	3168	printf "\n\n"
	3169	echo "coupled_run $iia $iio" > runfile_atmos
	3170	fi
	3171	poe ./a.out $ROPTS < runfile_atmos
[1]	3172	fi
	3173	else
[622]	3174	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
[1]	3175	then
[102]	3176	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[693]	3177	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
[1]	3178	then
	3179	if [[ -f $hostfile ]]
	3180	then
	3181	cp $hostfile hostfile
	3182	else
	3183	(( ii = 1 ))
	3184	while (( ii <= $numprocs ))
	3185	do
	3186	echo $localhost_realname >> hostfile
	3187	(( ii = ii + 1 ))
	3188	done
	3189	fi
	3190	export MP_HOSTFILE=hostfile
[331]	3191	if [[ $run_coupled_model = false ]]
	3192	then
	3193	if [[ "$ocean_file_appendix" = true ]]
	3194	then
	3195	echo "precursor_ocean" > runfile_atmos
	3196	else
	3197	echo "precursor_atmos" > runfile_atmos
	3198	fi
	3199	else
	3200	(( iia = $numprocs_atmos / $threads_per_task ))
	3201	(( iio = $numprocs_ocean / $threads_per_task ))
	3202	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3203	printf "\n using $coupled_mode coupling"
	3204	printf "\n\n"
	3205	echo "coupled_run $iia $iio" > runfile_atmos
	3206	fi
[622]	3207	if [[ $localhost = ibmy ]]
	3208	then
	3209	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3210	else
	3211	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
	3212	fi
[331]	3213
[1]	3214	else
	3215	if [[ "$host_file" = "" ]]
	3216	then
	3217	printf "\n +++ no hostfile given in configuration file"
	3218	locat=config_file
	3219	exit
	3220	else
	3221	eval host_file=$host_file
	3222	fi
	3223	export MP_HOSTFILE=$host_file
[102]	3224	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3225	fi
	3226	fi
[251]	3227	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3228	then
	3229	(( ii = nodes ))
	3230	if [[ $ii = 1 ]]
	3231	then
	3232	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3233	export MPIPROGINF=YES
[61]	3234	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3235	echo "*** execution on single node with mpirun"
[102]	3236	mpirun -np $numprocs ./a.out $ROPTS
[1]	3237	else
	3238	(( i = 0 ))
	3239	while (( i < ii ))
	3240	do
	3241	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3242	(( i = i + 1 ))
	3243	done
	3244
	3245	echo "#!/bin/sh" > mpi_exec_shell
	3246	echo " " >> mpi_exec_shell
	3247	echo "set -u" >> mpi_exec_shell
	3248	echo "F_ERRCNT=0" >> mpi_exec_shell
	3249	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3250	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3251	echo "cpurest=$cpurest" >> mpi_exec_shell
	3252	echo "fname=$fname" >> mpi_exec_shell
	3253	echo "localhost=$localhost" >> mpi_exec_shell
	3254	echo "return_addres=$return_addres" >> mpi_exec_shell
	3255	echo "return_username=$return_username" >> mpi_exec_shell
	3256	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3257	echo "write_binary=$write_binary" >> mpi_exec_shell
	3258	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3259	echo " " >> mpi_exec_shell
	3260	echo "export F_ERRCNT" >> mpi_exec_shell
	3261	echo "export MPIPROGINV" >> mpi_exec_shell
	3262	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3263	echo "export cpurest" >> mpi_exec_shell
	3264	echo "export fname" >> mpi_exec_shell
	3265	echo "export localhost" >> mpi_exec_shell
	3266	echo "export return_addres" >> mpi_exec_shell
	3267	echo "export return_username" >> mpi_exec_shell
	3268	echo "export tasks_per_node" >> mpi_exec_shell
	3269	echo "export write_binary" >> mpi_exec_shell
	3270	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3271	echo " " >> mpi_exec_shell
[102]	3272	echo "exec ./a.out" >> mpi_exec_shell
[1]	3273
	3274	chmod u+x mpi_exec_shell
	3275	export MPIPROGINF=YES
	3276	mpirun -f multinode_config &
	3277	wait
	3278
	3279	fi
[440]	3280	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
[1]	3281	then
	3282
	3283	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3284	# DOES NOT EXIST
[179]	3285	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	3286	then
[179]	3287	if [[ -f $hostfile ]]
	3288	then
	3289	cp $hostfile hostfile
	3290	else
	3291	(( ii = 1 ))
	3292	while (( ii <= $numprocs / $threads_per_task ))
	3293	do
	3294	echo $localhost_realname >> hostfile
	3295	(( ii = ii + 1 ))
	3296	done
	3297	fi
	3298	eval zeile=\"`head -n $ii hostfile`\"
	3299	printf "\n *** running on: $zeile"
[1]	3300	fi
[179]	3301
[1]	3302	(( ii = $numprocs / $threads_per_task ))
	3303	export OMP_NUM_THREADS=$threads_per_task
[696]	3304	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3305	if [[ $threads_per_task != 1 ]]
	3306	then
[405]	3307	# increase stack size to unlimited, because large runs
	3308	# may abort otherwise
	3309	ulimit -Ss unlimited
	3310	printf "\n threads per task: $threads_per_task stacksize: unlimited"
[1]	3311	fi
[102]	3312	if [[ $run_coupled_model = false ]]
[1]	3313	then
[291]	3314	if [[ "$ocean_file_appendix" = true ]]
	3315	then
	3316	echo "precursor_ocean" > runfile_atmos
	3317	else
	3318	echo "precursor_atmos" > runfile_atmos
	3319	fi
[102]	3320	printf "\n\n"
[179]	3321	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3322	then
[221]	3323	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3324	then
[366]	3325	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
	3326	# export MPI_DSM_DISTRIBUTE=1
	3327	# MPI_DSM_CPULIST: pin MPI processes to cores
[377]	3328	if [[ $use_openmp = false ]]
	3329	then
[412]	3330	if [[ "$sgi_feature" = ice2 ]]
	3331	then
	3332	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
	3333	else
	3334	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
	3335	fi
[622]	3336	else
	3337	unset MPI_DSM_CPULIST
[377]	3338	fi
[366]	3339	# MPI_IB_RAILS: use both IB rails on ICE2
	3340	export MPI_BUFS_PER_HOST=512
	3341	export MPI_IB_RAILS=2
[369]	3342	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
	3343	export MPI_CONNECTIONS_THRESHOLD=8192
[738]	3344	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
[562]	3345	export MPI_TYPE_DEPTH=20
[738]	3346	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
[683]	3347	export MPI_GROUP_MAX=64
[738]	3348	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
[693]	3349	if [[ $use_openmp = true ]]
	3350	then
	3351	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
	3352	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
	3353	else
	3354	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
	3355	fi
[388]	3356
	3357	# next is test for openmp usage
[622]	3358	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
	3359	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
[221]	3360	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3361	then
[374]	3362	export MV2_NUM_PORTS=2
[376]	3363	# The default setting of MV2_CPU_MAPPING gives best results
[405]	3364	# export MV2_ENABLE_AFFINITY=1
[376]	3365	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
[412]	3366	# if [[ "$sgi_feature" = ice2 ]]
	3367	# then
	3368	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
	3369	# else
	3370	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
	3371	# fi
[678]	3372	if [[ $use_openmp = true ]]
	3373	then
	3374	unset MV2_CPU_MAPPING
	3375	export MV2_ENABLE_AFFINITY=0
	3376	fi
[412]	3377	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
[678]	3378	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
[622]	3379	if [[ $use_openmp = true ]]
[405]	3380	then
[678]	3381	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
[693]	3382	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
[405]	3383	else
[693]	3384	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
[405]	3385	fi
[738]	3386	elif [[ "$mpilib" = impi ]]
	3387	then
	3388	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
	3389	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
[221]	3390	fi
[437]	3391	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[179]	3392	then
[544]	3393	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[164]	3394	else
[223]	3395	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3396	fi
[1]	3397	else
[164]	3398
[206]	3399	# currently there is no full MPI-2 support on ICE and XT4
	3400	(( iia = $numprocs_atmos / $threads_per_task ))
	3401	(( iio = $numprocs_ocean / $threads_per_task ))
	3402	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3403	printf "\n using $coupled_mode coupling"
[102]	3404	printf "\n\n"
[164]	3405
[206]	3406	if [[ $coupled_mode = "mpi2" ]]
[164]	3407	then
[206]	3408	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3409	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3410	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3411	then
[197]	3412
[221]	3413	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3414	then
	3415	# export MPI_LAUNCH_TIMEOUT=360
	3416	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3417	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3418	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3419	then
	3420	# ulimit -s 300000 # A too large stack size causes problems
	3421	# export MV2_NUM_PORTS=2
	3422	# export MV2_CPU_MAPPING=0:1:2:3
	3423	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3424	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3425	fi
[197]	3426
[437]	3427	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[206]	3428	then
[197]	3429
[206]	3430	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3431	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3432
	3433	else
	3434	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3435	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3436	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3437	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3438	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3439	fi
	3440	wait
	3441
[164]	3442	else
	3443
[206]	3444	echo "coupled_run $iia $iio" > runfile_atmos
	3445	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3446	then
	3447
[221]	3448	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3449	then
	3450	# export MPI_LAUNCH_TIMEOUT=360
	3451	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3452	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3453	then
	3454	# ulimit -s 300000 # A too large stack size causes problems
	3455	# export MV2_NUM_PORTS=2
	3456	# export MV2_CPU_MAPPING=0:1:2:3
	3457	mpiexec ./a.out $ROPTS < runfile_atmos
	3458	fi
[206]	3459
[437]	3460	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[206]	3461	then
	3462
	3463	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3464
[718]	3465	elif [[ $host = lck \|\| $host = lckordi ]]
[367]	3466	then
	3467	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
[206]	3468	fi
	3469	wait
[164]	3470	fi
[102]	3471
[206]	3472	fi
[1]	3473	elif [[ $host = decalpha ]]
	3474	then
[102]	3475	dmpirun -np $numprocs a.out $ROPTS
[440]	3476	elif [[ $host = lckyoto ]]
	3477	then
	3478	set -xv
	3479	export P4_RSHCOMMAND=plesh
	3480	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
	3481	if [[ "$ENVIRONMENT" = BATCH ]]
	3482	then
[505]	3483	if [[ "$cond2" = fujitsu ]]
	3484	then
	3485	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
	3486	elif [[ "cond2" = pgi ]]
	3487	then
	3488	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
	3489	else
	3490	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
	3491	fi
[440]	3492	else
[505]	3493	if [[ "$cond2" = "" ]]
	3494	then
	3495	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
	3496	else
	3497	mpirun -np $numprocs ./a.out $ROPTS
	3498	fi
[440]	3499	fi
	3500	set +xv
[1]	3501	elif [[ $host = lctit ]]
	3502	then
[678]	3503	export OMP_NUM_THREADS=$threads_per_task
	3504	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3505	if [[ "$threads_per_task" != 1 ]]
	3506	then
	3507	export MV2_ENABLE_AFFINITY=0
	3508	fi
	3509	echo "----- PBS_NODEFILE content:"
	3510	cat $PBS_NODEFILE
	3511	echo "-----"
	3512	(( ii = $numprocs / $threads_per_task ))
	3513	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
	3514	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
[1]	3515	else
[102]	3516	mpprun -n $numprocs a.out $ROPTS
[1]	3517	fi
	3518	[[ $? != 0 ]] && execution_error=true
	3519
	3520
	3521	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3522	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3523	then
	3524	apprentice
	3525	fi
	3526	else
[102]	3527	a.out $ROPTS
[1]	3528	fi
	3529	fi
	3530	if [[ $? != 0 \|\| $execution_error = true ]]
	3531	then
	3532
	3533	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3534	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3535	printf "\n +++ runtime error occured"
	3536	locat=execution
	3537	exit
	3538	else
[102]	3539	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3540	printf "\n$striche\n *** execution finished \n"
[260]	3541
[261]	3542	# Stop the dvr streaming server and process the dvr output in order
	3543	# to create dvrs- and html-files containing all streams
[260]	3544	if [[ "$dvrserver_id" != "" ]]
	3545	then
	3546	kill $dvrserver_id
	3547	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3548
[262]	3549	# If there is a directory, data have been output by the
	3550	# streaming server. Otherwise, user has chosen dvrp_output=local
	3551	if [[ -d DATA_DVR ]]
	3552	then
[261]	3553
[262]	3554	# Add the current dvr configuration file to the dvr output
	3555	# directory
	3556	cp .dvrserver.config DATA_DVR
	3557
	3558	# Process the dvr output (option -s for also generating
	3559	# sequence mode data)
	3560	process_dvr_output -d DATA_DVR -f $fname -s
	3561
	3562	else
	3563
	3564	# Process the local output
	3565	process_dvr_output -l -d DATA_DVR -f $fname
	3566
	3567	fi
	3568
	3569	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3570	then
	3571
	3572	# Process dvr output generated in local mode (dvrp_output=local)
	3573	process_dvr_output -l -d DATA_DVR -f $fname
	3574
[260]	3575	fi
[1]	3576	fi
	3577
	3578
	3579
[503]	3580	# Call of combine_plot_fields in order to merge single files written
	3581	# by each PE into one file.
	3582	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
	3583	then
	3584	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
	3585	printf "\n 2d- and/or 3d-data may be incomplete!"
	3586	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
	3587	else
	3588	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
	3589	combine_plot_fields${block}.x
	3590	fi
	3591
	3592
	3593
[1]	3594	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3595	(( i = 0 ))
	3596	while (( i < ioc ))
	3597	do
	3598	(( i = i + 1 ))
	3599	if (( i == 1 ))
	3600	then
	3601	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3602	fi
	3603	printf "\n >>> ${out_command[$i]}"
	3604	eval ${out_command[$i]}
	3605	if (( i == ioc ))
	3606	then
	3607	printf "\n$striche\n"
	3608	fi
	3609	done
	3610
	3611
	3612	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3613	if [[ $do_trace = true ]]
	3614	then
	3615	printf "\n\n"
	3616	ls -al
	3617	fi
	3618
	3619
	3620
	3621	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3622	(( i = 0 ))
	3623	while (( i < iout ))
	3624	do
	3625	(( i = i + 1 ))
	3626	if (( i == 1 ))
	3627	then
	3628	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3629	fi
	3630
	3631	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3632	files_for_pes=false; filetyp=file
	3633	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3634	then
	3635	files_for_pes=true; filetyp=directory
	3636	actionout[$i]=""
	3637	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3638	then
	3639	actionout[$i]=""
	3640	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3641	then
	3642	files_for_pes=true; filetyp=directory
	3643	actionout[$i]="ar"
	3644	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3645	then
	3646	actionout[$i]="ar"
	3647	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3648	then
	3649	files_for_pes=true; filetyp=directory
	3650	actionout[$i]="fl"
	3651	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3652	then
	3653	actionout[$i]="fl"
	3654	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3655	then
	3656	files_for_pes=true; filetyp=directory
	3657	actionout[$i]="tr"
	3658	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3659	then
	3660	actionout[$i]="tr"
	3661	fi
	3662
	3663	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3664	then
	3665	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3666	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3667	then
	3668	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3669	else
	3670
	3671
	3672	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3673	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3674	# REMOTE-RECHNUNGEN
	3675	if [[ "${actionout[$i]}" = tr ]]
	3676	then
	3677	if [[ $localhost != $fromhost ]]
	3678	then
	3679	if [[ $files_for_pes = false ]]
	3680	then
	3681	cps=""
	3682	cst=""
	3683	else
	3684	cps=-c
	3685	cst="/"
	3686	fi
[622]	3687	if [[ $localhost = nech ]]
[1]	3688	then
	3689
	3690	# TRANSFER IN EIGENSTAENDIGEM JOB
	3691	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3692	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3693	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3694	if [[ $files_for_pes = false ]]
	3695	then
	3696	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3697	else
	3698	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3699	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3700	fi
	3701
	3702	echo "set -x" > transfer_${localout[$i]}
	3703	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3704
	3705	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	3706	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	3707	printf "\n or higher cycle\n"
	3708	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3709
[1]	3710	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3711
	3712	if [[ $localhost = nech ]]
	3713	then
[82]	3714	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3715	else
	3716	if [[ "$LOGNAME" = b323013 ]]
	3717	then
[164]	3718	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3719	else
[164]	3720	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3721	fi
	3722	fi
	3723
	3724	else
	3725
	3726	# TRANSFER INNERHALB DIESES JOBS
	3727	transfer_failed=false
[82]	3728	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	3729	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	3730	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3731	[[ $? != 0 ]] && transfer_failed=true
[1]	3732
	3733	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3734	# LOKALER MASCHINE ANLEGEN
	3735	if [[ $transfer_failed = true ]]
	3736	then
	3737	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3738	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3739
	3740	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3741	# ANLEGEN.
	3742	eval local_catalog=${pathout[$i]}
	3743	if [[ ! -d $local_catalog ]]
	3744	then
	3745	printf " *** local directory does not exist. Trying to create:\n"
	3746	printf " $local_catalog \n"
	3747	mkdir -p $local_catalog
	3748	fi
	3749	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3750	transfer_problems=true
	3751	fi
	3752	fi
	3753	else
	3754
	3755	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	3756	actionout[$i]=""
	3757	fi
	3758	fi
	3759
	3760
	3761	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3762	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3763	# REMOTE-RECHNUNGEN
	3764	if [[ "${actionout[$i]}" = tra ]]
	3765	then
	3766	if [[ $localhost != $fromhost ]]
	3767	then
[622]	3768	if [[ $localhost = ibmh \|\| $localhost = nech ]]
[1]	3769	then
	3770
	3771	# TRANSFER IN EIGENSTAENDIGEM JOB
	3772	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3773	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3774	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3775	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3776
	3777	echo "set -x" > transfer_${localout[$i]}
	3778	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3779
	3780	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	3781	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	3782	printf "\n or higher cycle\n"
	3783	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3784
[1]	3785	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3786
	3787	if [[ $localhost = nech ]]
	3788	then
[82]	3789	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3790	else
	3791	if [[ $LOGNAME = b323013 ]]
	3792	then
[164]	3793	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3794	else
[164]	3795	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3796	fi
	3797	fi
	3798
	3799	else
	3800
	3801	# TRANSFER INNERHALB DIESES JOBS
	3802	transfer_failed=false
[82]	3803	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	3804	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	3805	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3806	[[ $? != 0 ]] && transfer_failed=true
[1]	3807
	3808	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3809	# LOKALER MASCHINE ANLEGEN
	3810	if [[ $transfer_failed = true ]]
	3811	then
	3812	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3813	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3814
	3815	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3816	# ANLEGEN
	3817	eval local_catalog=${pathout[$i]}
	3818	if [[ ! -d $local_catalog ]]
	3819	then
	3820	printf " *** local directory does not exist. Trying to create:\n"
	3821	printf " $local_catalog \n"
	3822	mkdir -p $local_catalog
	3823	fi
	3824
	3825	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3826	transfer_problems=true
	3827	fi
	3828	fi
	3829	else
	3830
	3831	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	3832	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	3833	actionout[$i]=a
	3834	fi
	3835	fi
	3836
	3837
	3838	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	3839	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	3840	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	3841	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	3842	if [[ "${actionout[$i]}" = fl ]]
	3843	then
	3844	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3845	chmod g+rx $tmp_data_catalog
	3846	if [[ $files_for_pes = false ]]
	3847	then
	3848	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3849	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3850	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	3851	else
	3852	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	3853	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3854	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	3855	cd ${localout[$i]}
	3856	for file in $(ls *)
	3857	do
	3858	ln -f $file $tmp_data_catalog/${frelout[$i]}
	3859	done
	3860	cd $TEMPDIR
[1]	3861	fi
	3862
	3863
	3864	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	3865	if [[ $store_on_archive_system = true ]]
	3866	then
	3867
	3868	if [[ $archive_system = asterix ]]
	3869	then
	3870	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3871	if [[ $files_for_pes = false ]]
	3872	then
	3873	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3874	else
	3875	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3876	fi
	3877	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3878	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	3879	echo "then" >> archive_${frelout[$i]}
	3880	echo " do_stageout=false" >> archive_${frelout[$i]}
	3881	echo "else" >> archive_${frelout[$i]}
	3882	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	3883	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	3884	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	3885	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	3886	if [[ $files_for_pes = false ]]
	3887	then
	3888	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	3889	else
	3890	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	3891	fi
	3892	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	3893	echo "fi" >> archive_${frelout[$i]}
	3894	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3895	elif [[ $archive_system = DMF ]]
	3896	then
	3897	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3898	if [[ $files_for_pes = false ]]
	3899	then
	3900	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	3901	locat=DMF
	3902	exit
	3903	else
	3904	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	3905	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	3906	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	3907	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	3908	fi
	3909	elif [[ $archive_system = tivoli ]]
	3910	then
	3911	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3912	if [[ $files_for_pes = false ]]
	3913	then
	3914	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3915	echo "set -x" >> archive_${frelout[$i]}
	3916	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3917	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3918	else
	3919
	3920	echo "set -x" >> archive_${frelout[$i]}
	3921	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3922	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3923	cd $tmp_data_catalog
	3924	all_files=`ls -1 ${frelout[$i]}/*`
	3925	cd - > /dev/null
	3926	(( inode = 0 ))
	3927	(( tp1 = tasks_per_node + 1 ))
	3928	while (( inode < nodes ))
	3929	do
	3930	# echo "*** all_files = \"$all_files\" "
	3931	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3932	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3933	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	3934	# echo "*** files = \"$files\" "
	3935	# echo "*** all_files = \"$all_files\" "
[416]	3936	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3937	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3938	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
	3939	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[397]	3940	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3941	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[1]	3942	(( inode = inode + 1 ))
	3943	done
	3944	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3945	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3946	fi
	3947	elif [[ $archive_system = ut ]]
	3948	then
	3949	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3950	if [[ $files_for_pes = false ]]
	3951	then
	3952	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3953	echo "set -x" >> archive_${frelout[$i]}
	3954	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3955	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3956	else
	3957
	3958	echo "set -x" >> archive_${frelout[$i]}
	3959	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3960	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3961	cd $tmp_data_catalog
	3962	all_files=`ls -1 ${frelout[$i]}/*`
	3963	cd - > /dev/null
	3964	(( inode = 0 ))
	3965	(( tp1 = tasks_per_node + 1 ))
	3966	while (( inode < nodes ))
	3967	do
	3968	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3969	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3970	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3971	(( inode = inode + 1 ))
	3972	done
	3973	fi
	3974	elif [[ $archive_system = none ]]
	3975	then
	3976	printf " +++ archiving on $localhost not available!\n"
	3977	fi
	3978
	3979	if [[ $archive_system != none ]]
	3980	then
[399]	3981	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
[1]	3982	then
[164]	3983	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[416]	3984	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
[1]	3985	elif [[ $localhost = nech ]]
	3986	then
[82]	3987	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3988	fi
	3989	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3990	fi
	3991	else
[399]	3992	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
[1]	3993	fi
	3994
	3995
	3996	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	3997	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3998	if [[ $files_for_pes = false ]]
	3999	then
	4000	cat /dev/null > ${pathout[$i]}
	4001	else
	4002	mkdir -p ${pathout[$i]}
	4003	fi
	4004
	4005	fi
	4006
	4007
	4008	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	4009	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	4010	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	4011	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	4012	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	4013	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	4014	if [[ "${actionout[$i]}" = ar ]]
	4015	then
	4016	if [[ $files_for_pes = false ]]
	4017	then
	4018	printf "\n >>> OUTPUT: ${localout[$i]} to"
	4019	printf "\n ${pathout[$i]}"
	4020	printf "\n File will be copied to archive-system ($archive_system) !\n"
	4021	else
	4022	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	4023	printf "\n ${pathout[$i]}"
	4024	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	4025	fi
	4026	mv ${localout[$i]} ${frelout[$i]}
	4027
	4028	file_saved=false
	4029
	4030	if [[ $archive_system = asterix ]]
	4031	then
	4032	do_stageout=true
	4033	(( stageout_anz = 0 ))
	4034	while [[ $do_stageout = true ]]
	4035	do
	4036	if [[ $files_for_pes = false ]]
	4037	then
	4038	stageout ${frelout[$i]} > STAGE_OUTPUT
	4039	else
	4040	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	4041	fi
	4042	cat STAGE_OUTPUT
	4043	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	4044	then
	4045	file_saved=true
	4046	do_stageout=false
	4047	else
	4048	if [[ $files_for_pes = false ]]
	4049	then
	4050	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	4051	else
	4052	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	4053	fi
	4054	(( stageout_anz = stageout_anz + 1 ))
	4055	if (( stageout_anz == 10 ))
	4056	then
	4057	printf "\n +++ stoped after 10 unsuccessful tries!"
	4058	archive_save=false
	4059	do_stageout=false
	4060	else
	4061	printf "\n *** new try to store on archive after 15 min:"
	4062	sleep 900
	4063	fi
	4064	fi
	4065	done
	4066	elif [[ $archive_system = DMF ]]
	4067	then
	4068	if [[ $files_for_pes = false ]]
	4069	then
	4070	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	4071	locat=DMF
	4072	exit
	4073	else
	4074	rm -rf $ARCHIVE/${frelout[$i]}
	4075	cp -r ${frelout[$i]} $ARCHIVE
	4076	fi
	4077	file_saved=true
	4078	elif [[ $archive_system = tivoli ]]
	4079	then
	4080	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4081	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4082	# GELEGT WERDEN
	4083	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4084	chmod g+rx $tmp_data_catalog
	4085	if [[ $files_for_pes = false ]]
	4086	then
	4087	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4088	else
	4089	mkdir $tmp_data_catalog/${frelout[$i]}
	4090	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4091	fi
	4092
	4093	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4094	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4095	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4096	if [[ $files_for_pes = false ]]
	4097	then
	4098	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4099	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4100	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4101	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4102	else
	4103	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4104	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4105	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4106	fi
	4107
[164]	4108	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	4109	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4110	file_saved=true
	4111
	4112	elif [[ $archive_system = ut ]]
	4113	then
	4114	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4115	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4116	# GELEGT WERDEN
	4117	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4118	chmod g+rx $tmp_data_catalog
	4119	if [[ $files_for_pes = false ]]
	4120	then
	4121	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4122	else
	4123	mkdir $tmp_data_catalog/${frelout[$i]}
	4124	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4125	fi
	4126
	4127	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4128	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4129	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4130	if [[ $files_for_pes = false ]]
	4131	then
	4132	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4133	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4134	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4135	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4136	else
	4137	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4138	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4139	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4140	fi
	4141
[82]	4142	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	4143	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4144	file_saved=true
	4145
	4146	else
	4147	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	4148	archive_save=false
	4149	fi
	4150	if [[ $file_saved = true ]]
	4151	then
	4152	if [[ $files_for_pes = false ]]
	4153	then
	4154	cat /dev/null > ${pathout[$i]}
	4155	else
	4156	mkdir -p ${pathout[$i]}
	4157	fi
	4158	fi
	4159	fi
	4160
	4161	# APPEND AUF LOKALER MASCHINE
	4162	if [[ "${actionout[$i]}" = "a" ]]
	4163	then
	4164	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	4165	cat ${localout[$i]} >> ${pathout[$i]}
	4166	fi
	4167
	4168	# KOPIEREN AUF LOKALER MASCHINE
	4169	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	4170	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	4171	then
	4172
	4173	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	4174	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	4175	then
	4176	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	4177	if [[ $link_local_output = true ]]
	4178	then
	4179	printf " using ln -f\n"
	4180	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4181	fi
	4182	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4183	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	4184	then
	4185	if [[ $link_local_output = true ]]
	4186	then
	4187	printf " ln failed, using cp...\n"
	4188	fi
	4189	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4190	fi
[1]	4191	else
	4192	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	4193	if [[ $link_local_output = true ]]
	4194	then
	4195	printf " using ln -f\n"
	4196	ln -f ${localout[$i]} ${pathout[$i]}
	4197	fi
	4198	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4199	if [[ ! -f "${pathout[$i]}" ]]
	4200	then
	4201	if [[ $link_local_output = true ]]
	4202	then
	4203	printf " ln failed, using cp...\n"
	4204	fi
	4205	cp ${localout[$i]} ${pathout[$i]}
	4206	fi
[1]	4207	fi
	4208
	4209	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	4210	then
	4211
	4212	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	4213	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	4214	# WIRD DANN KOPIERT
	4215	# PER MOVE UMBENANNT WERDEN
	4216	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	4217	if [[ $link_local_output = true ]]
	4218	then
	4219	printf " using ln -f\n"
	4220	mkdir ${pathout[$i]}
	4221	cd ${localout[$i]}
	4222	for file in $(ls *)
	4223	do
	4224	ln -f $file ${pathout[$i]}
	4225	done
	4226	cd $TEMPDIR
	4227	fi
	4228	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	4229	if [[ ! -f "${pathout[$i]}/_0000" ]]
	4230	then
	4231	if [[ $link_local_output = true ]]
	4232	then
	4233	printf " ln failed for .../_0000, using cp...\n"
	4234	fi
	4235	cp -r ${localout[$i]} ${pathout[$i]}
	4236	fi
[1]	4237
	4238	fi
	4239	fi
	4240	done
	4241	if (( i != 0 ))
	4242	then
	4243	if [[ $transfer_problems = true ]]
	4244	then
	4245	printf "\n$striche\n *** OUTPUT-files saved"
	4246	printf "\n +++ WARNING: some data transfers failed! \n"
	4247	else
	4248	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4249	fi
	4250	fi
	4251
	4252
	4253	# EVENTUELL FOLGEJOB STARTEN
	4254	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4255	if [[ -f CONTINUE_RUN ]]
	4256	then
	4257
	4258	if [[ $archive_save = true ]]
	4259	then
	4260
	4261	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4262	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4263	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4264	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4265	# HANDEN
	4266	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4267	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4268	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4269	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4270	then
	4271	mc=`echo $mc \| sed 's/#/f/g'`
	4272	fi
	4273
	4274
	4275	# JOB STARTEN
	4276	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4277	echo " $mc"
	4278	printf "\n$striche\n"
	4279	if [[ $localhost != $fromhost ]]
	4280	then
	4281
[693]	4282	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
[1]	4283	then
	4284	echo "*** ssh will be used to initiate restart-runs!"
	4285	echo " return_addres=\"$return_addres\" "
	4286	echo " return_username=\"$return_username\" "
[635]	4287	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
[1]	4288	then
[374]	4289	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4290	else
[693]	4291	if [[ $localhost = ibmkisti ]]
	4292	then
	4293	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
	4294	else
	4295	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4296	fi
[1]	4297	fi
	4298	else
	4299	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4300	locat=restart; exit
	4301	fi
	4302
	4303	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4304	# DER AKTUELLE JOB ENDET
[399]	4305	if [[ $queue = special1q ]]
	4306	then
	4307	sleep 120
	4308	else
	4309	sleep 30
	4310	fi
[1]	4311
	4312	else
	4313
	4314	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4315	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4316	cd $LOCAL_PWD
[108]	4317	if [[ $localhost = lcfimm ]]
	4318	then
	4319	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4320	else
	4321	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4322	fi
[1]	4323	cd - > /dev/null
	4324	fi
	4325	printf "\n$striche\n *** restart-run initiated \n"
	4326
	4327
	4328	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4329	# GEHOLT WORDEN SIND, LOESCHEN
	4330	(( i = 0 ))
	4331	while (( i < iin ))
	4332	do
	4333	(( i = i + 1 ))
	4334	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4335	then
	4336	rm -r $tmp_data_catalog/${frelin[$i]}
	4337	fi
	4338	done
	4339
	4340	else
	4341
	4342	printf "\n +++ no restart-run possible, since errors occured"
	4343	printf "\n during the archive process"
	4344	fi
	4345
	4346	fi
	4347
	4348
	4349
	4350	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4351	if [[ "$email_notification" != "none" ]]
[1]	4352	then
	4353
	4354	if [[ $localhost != $fromhost ]]
	4355	then
	4356	if [[ -f CONTINUE_RUN ]]
	4357	then
	4358	echo "PALM restart run necessary" > email_text
	4359	echo "description header of actual run:" >> email_text
	4360	cat CONTINUE_RUN >> email_text
	4361	echo "mrun-command to restart:" >> email_text
	4362	echo "$mc" >> email_text
	4363	else
	4364	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4365	fi
	4366	mail $email_notification < email_text
	4367	printf "\n *** email notification sent to \"$email_notification\" "
	4368	fi
	4369	fi
	4370
	4371
	4372
	4373	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4374	cd $HOME
	4375	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4376
	4377	else
	4378
	4379
	4380	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4381	# CHENDE AKTIONEN DURCHGEFUEHRT
	4382
	4383	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[693]	4384	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q \$queue -R $return_addres -U $return_username -u $remote_username"
[1]	4385	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4386	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4387	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4388	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4389	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4390	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4391	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4392	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4393	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4394	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4395	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4396	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4397	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4398	if [[ $use_openmp = true ]]
	4399	then
[622]	4400	mrun_com=${mrun_com}" -O $threads_per_task"
[1]	4401	fi
[622]	4402	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
[397]	4403	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
[1]	4404	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4405	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4406	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4407	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4408	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4409	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[1]	4410	if [[ $do_remote = true ]]
	4411	then
	4412	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4413	fi
	4414
	4415
	4416	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4417	jobfile=jobfile.$RANDOM
	4418
	4419
	4420	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4421	echo "mkdir $TEMPDIR" >> $jobfile
	4422	echo "cd $TEMPDIR" >> $jobfile
	4423
	4424
	4425	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4426	if [[ $do_trace = true ]]
	4427	then
	4428	echo "set -x" >> $jobfile
	4429	else
	4430	echo "set +vx" >> $jobfile
	4431	fi
	4432
	4433
[191]	4434	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4435	# DATEI FUER DEN JOB
[693]	4436	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
[1]	4437	then
	4438
[191]	4439	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4440	# KOPIEREN
	4441	if [[ $restart_run != true ]]
	4442	then
	4443	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4444	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4445	fi
[1]	4446
[191]	4447	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[693]	4448	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
[193]	4449	echo "set -x" >> $jobfile
[693]	4450	if [[ $host = $localhost ]]
	4451	then
	4452	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4453	else
	4454	if [[ $host != ibmkisti ]]
	4455	then
	4456	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4457	else
	4458	# on KISTI's IBM firewall is only opened on interactive node
	4459	echo "localdir=\`pwd\`" >> $jobfile
	4460	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
	4461	fi
	4462	fi
[193]	4463	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4464
[193]	4465	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4466	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4467	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4468	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4469	echo "execute_mrun=true" >> $jobfile
	4470	echo " " >> $jobfile
	4471
[191]	4472	else
	4473
	4474	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4475	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4476	if [[ $do_compile = true ]]
	4477	then
	4478
	4479	source_catalog=SOURCES_FOR_RUN_$fname
	4480
	4481	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4482	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4483	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4484	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4485	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4486	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4487
	4488	for filename in $source_list
	4489	do
	4490	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4491	echo "cat > $filename << \"%END%\"" >> $jobfile
	4492	cat $source_catalog/$filename >> $jobfile
	4493	echo " " >> $jobfile
	4494	echo "%END%" >> $jobfile
	4495	echo " " >> $jobfile
	4496	done
	4497
[1]	4498	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4499	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4500	cat $source_catalog/Makefile >> $jobfile
[1]	4501	echo " " >> $jobfile
	4502	echo "%END%" >> $jobfile
	4503	echo " " >> $jobfile
	4504
[191]	4505	echo "cd - > /dev/null" >> $jobfile
[1]	4506
[191]	4507	fi
[1]	4508
	4509
[191]	4510	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4511	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4512	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4513	cat $config_file >> $jobfile
	4514	echo "%END%" >> $jobfile
	4515	echo " " >> $jobfile
[1]	4516
	4517
[191]	4518	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4519	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[693]	4520	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4521	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4522	echo "%END%" >> $jobfile
[191]	4523	echo "chmod u+x $mrun_script_name" >> $jobfile
	4524	echo "execute_mrun=true" >> $jobfile
	4525	echo " " >> $jobfile
[1]	4526
	4527	fi
	4528
[191]	4529
[1]	4530	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4531	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4532	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4533	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4534	if [[ $do_remote = true ]]
	4535	then
	4536	(( i = 0 ))
	4537	while (( i < iin ))
	4538	do
	4539	(( i = i + 1 ))
	4540	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4541	if [[ "${transin[$i]}" = job ]]
	4542	then
	4543	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4544	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4545	echo " " >> $jobfile
	4546	echo "%END%" >> $jobfile
	4547	else
[82]	4548	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4549	fi
	4550
	4551	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4552	echo "if [[ \$? = 1 ]]" >> $jobfile
	4553	echo "then" >> $jobfile
	4554	echo " echo \" \" " >> $jobfile
	4555	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4556	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4557	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4558	echo " execute_mrun=false" >> $jobfile
	4559	echo "fi" >> $jobfile
	4560	done
	4561	fi
	4562
	4563	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4564	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4565	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4566	echo "export LOCAL_PWD" >> $jobfile
	4567
	4568	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4569	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4570	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4571
[66]	4572	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4573	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4574	then
	4575	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4576	fi
[1]	4577
[693]	4578	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
[1]	4579	echo "set -x" >> $jobfile
[693]	4580	echo "queue=$queue" >> $jobfile
[1]	4581	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4582
	4583	echo 'ls -al; echo `pwd`' >> $jobfile
	4584	echo "cd \$HOME" >> $jobfile
	4585	echo "rm -rf $TEMPDIR" >> $jobfile
	4586
	4587
	4588
	4589
	4590	# JOB PER SUBJOB STARTEN
	4591	if [[ $silent = false ]]
	4592	then
	4593	printf "\n "
	4594	else
	4595	printf "\n\n"
	4596	fi
	4597
[352]	4598	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
[1]	4599	rm -rf $jobfile
	4600
	4601
	4602	fi # ENDE REMOTE-TEIL
	4603
	4604
	4605
	4606	# ENDE DER PROZEDUR

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