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source: palm/trunk/SCRIPTS/mrun @ 741

Last change on this file since 741 was 741, checked in by raasch, 13 years ago
bugfix for local append of output files with suffix (.nc)
Property svn:keywords set to `Id Rev`
File size: 175.6 KB

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1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 741 2011-08-18 06:33:16Z raasch $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and atmosphere
218	# is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
222	# usage, totalview usage extended
223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
224	# 03/04/11 - Micha - added lckordi
225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
226	# 17/08/11 - Siggi - extensions for impi library
227	# 18/08/11 - Siggi - bugfix for local append of output files with suffix (.nc)
228
229
230
231	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
232
233	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
234	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
235	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
236
237	AddFilenames=""
238	additional_conditions=""
239	add_source_path=""
240	afname=""
241	archive_save=true
242	archive_system=none
243	compiler_name=""
244	cond1=""
245	cond2=""
246	config_file=.mrun.config
247	coupled_dist=""
248	coupled_mode="mpi1"
249	cpp_opts=""
250	cpp_options=""
251	cpumax=0
252	cpurest=0
253	delete_temporary_catalog=true
254	do_batch=false
255	do_compile=true
256	do_remote=false
257	do_stagein=true
258	do_stageout=true
259	do_trace=false
260	email_notification="none"
261	exclude=""
262	executable=""
263	execution_error=false
264	fimm=false
265	fname=test
266	fromhost=""
267	global_revision=""
268	group_number=none
269	host=""
270	host_file=""
271	hp=""
272	ignore_archive_error=false
273	input_list=""
274	interpreted_config_file=""
275	job_catalog="~/job_queue"
276	job_on_file=""
277	keep_data_from_previous_run=false
278	link_local_input=false
279	link_local_output=false
280	localhost_realname=$(hostname)
281	local_compile=false
282	local_dvrserver_running=.FALSE.
283	locat=normal
284	mainprog=""
285	makefile=""
286	mc=$0
287	while [[ $(echo $mc \| grep -c "/") != 0 ]]
288	do
289	mc=`echo $mc \| cut -f2- -d"/"`
290	done
291	module_calls=""
292	mrun_script_name=$mc
293	netcdf_inc=""
294	netcdf_lib=""
295	netcdf_support=false
296	node_usage=default
297	numprocs=""
298	numprocs_atmos=0
299	numprocs_ocean=0
300	OOPT=""
301	openmp=false
302	output_list=""
303	package_list=""
304	punkte="..........................................................."
305	queue=none
306	read_from_config=""
307	restart_run=false
308	if [[ `hostname` = rte10 ]]
309	then
310	return_addres=133.5.185.60
311	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
312	elif [[ `hostname` = climate0 ]]
313	then
314	return_addres=165.132.26.68
315	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
316	else
317	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
318	fi
319	return_password=""
320	return_username=$LOGNAME
321	remotecall=false
322	remote_username=""
323	run_coupled_model=false
324	run_mode=""
325	scirocco=false
326	store_on_archive_system=false
327	striche=" ----------------------------------------------------------------------------"
328	silent=false
329	source_list=""
330	source_path=SOURCE
331	tasks_per_node=""
332	threads_per_task=1
333	tmpcreate=false
334	tmp_data_catalog=""
335	transfer_problems=false
336	usern=$LOGNAME
337	use_openmp=false
338	working_directory=`pwd`
339	TOPT=""
340	XOPT=""
341	zeit=$( date \| cut -c 12-19 )
342
343	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
344	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
345
346	typeset -R30 calltime
347	typeset -L20 spalte1
348	typeset -L40 spalte2
349	typeset -L60 spalte3
350	typeset -L35 string1=`date`
351	typeset -L12 string2=$usern
352	typeset -L12 string3=$localhost_realname
353	typeset -L12 string4
354	typeset -L12 string5
355	typeset -L30 version="MRUN 2.0 Rev$Rev: 741 $"
356
357
358
359	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
360	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
361
362	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
363	# EXPORTIERT WERDEN
364	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
365	export group_number input_list memory numprocs output_list queue run_mode
366
367
368
369	# FEHLERBEHANDLUNG
370	# BEI EXIT:
371	trap 'rm -rf $working_directory/tmp_mrun
372	if [[ $locat != localhost ]]
373	then
374	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
375	# then
376	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
377	#MRUN-calls on $localhost
378	#
379	#date and time user localhost remotehost termination mrun-command
380	#--------------------------------------------------------------------------------------------------------------------
381	#%STATEND%
382	# chmod 666 ${mrun_path}/statistik/mrun_statistik
383	# fi
384	#
385	# # EINTRAG IN DIE STATISTIK-DATEI
386	# string4=$host
387	# string5=$locat
388	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
389	# then
390	# if [[ $do_batch = true ]]
391	# then
392	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
393	# else
394	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
395	# fi
396	# fi
397	echo " " > /dev/null
398	fi
399
400	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
401	then
402
403	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
404	(( i = 0 ))
405	while (( i < iec ))
406	do
407	(( i = i + 1 ))
408	printf "\n *** Execution of ERROR-command:\n"
409	printf " >>> ${err_command[$i]}\n"
410	eval ${err_command[$i]}
411	done
412	if [[ -n $interpreted_config_file ]] then
413	rm -rf $interpreted_config_file
414	fi
415	if [[ -n .mrun_environment ]] then
416	rm -rf .mrun_environment
417	fi
418	if [[ $tmpcreate = true ]]
419	then
420	printf "\n *** Contents of \"$TEMPDIR\":\n"
421	ls -al; cd
422	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
423	fi
424	if [[ "$dvrserver_id" != "" ]]
425	then
426	echo "+++ killing dvrserver_id=$dvrserver_id"
427	kill $dvrserver_id
428	fi
429	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
430	then
431	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
432	fi
433	printf "\n\n+++ MRUN killed \n\n"
434	elif [[ $locat != control_c ]]
435	then
436	printf "\n\n --> all actions finished\n\n"
437	printf " Bye, bye $usern !!\n\n"
438	fi' exit
439
440
441	# BEI TERMINAL-BREAK:
442	trap 'rm -rf $working_directory/tmp_mrun
443	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
444	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
445	then
446	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
447	fi
448	if [[ "$dvrserver_id" != "" ]]
449	then
450	echo "+++ killing dvrserver_id=$dvrserver_id"
451	kill $dvrserver_id
452	fi
453	printf "\n+++ MRUN killed by \"^C\" \n\n"
454	locat=control_c
455	exit
456	' 2
457
458
459	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
460	# BEEN SET
461	if [[ "$PALM_BIN" = "" ]]
462	then
463	printf "\n +++ environment variable PALM_BIN has not been set"
464	printf "\n please set it to the directory where the PALM scripts are located"
465	locat=palm_bin; exit
466	fi
467	export PATH=$PALM_BIN:$PATH
468
469
470
471	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
472	# FUER FOLGEJOBS BENOETIGT WIRD
473	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vxX:yY: option
474	do
475	case $option in
476	(a) afname=$OPTARG;;
477	(A) store_on_archive_system=true; mc="$mc -A";;
478	(b) do_batch=true; mc="$mc -b";;
479	(B) delete_temporary_catalog=false; mc="$mc -B";;
480	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
481	(C) restart_run=true; mc="$mc -C";;
482	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
483	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
484	(F) job_on_file="-D"; mc="$mc -F";;
485	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
486	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
487	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
488	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
489	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
490	(I) ignore_archive_error=true; mc="$mc -I";;
491	(k) keep_data_from_previous_run=true; mc="$mc -k";;
492	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
493	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
494	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
495	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
496	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
497	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
498	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
499	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
500	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
501	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
502	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
503	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
504	(S) read_from_config=false; mc="$mc -S";;
505	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
506	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
507	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
508	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
509	(v) silent=true; mc="$mc -v";;
510	(x) do_trace=true;set -x; mc="$mc -x";;
511	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
512	(y) ocean_file_appendix=true; mc="$mc -y";;
513	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
514	(\?) printf "\n +++ unknown option $OPTARG \n"
515	printf "\n --> type \"$0 ?\" for available options \n"
516	locat=parameter;exit;;
517	esac
518	done
519
520
521	# EVTL. POSITIONSPARAMETER EINLESEN
522	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
523	shift OPTIND-1
524
525
526	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
527	if [[ "$1" = "?" ]]
528	then
529	(printf "\n *** mrun can be called as follows:\n"
530	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
531	printf "\n Description of available options:\n"
532	printf "\n Option Description Default-Value"
533	printf "\n -a base name of input files equiv. -d"
534	printf "\n -A archiving when using file-attribute fl"
535	printf "\n -b batch-job on local machine ---"
536	printf "\n -B do not delete temporary directory at end ---"
537	printf "\n -c configuration file .mrun.config"
538	printf "\n -d base name of files attached to program test"
539	printf "\n -D preprocessor(cpp)-directives \"\" "
540	printf "\n -F create remote job file only ---"
541	printf "\n -h execution host $localhost_realname"
542	printf "\n -i INPUT control list \"\" "
543	printf "\n -I archiving errors of previous batch-jobs"
544	printf "\n will be ignored"
545	printf "\n -k keep data from previous run"
546	printf "\n -K additional conditions for controling"
547	printf "\n usage of conditional code and"
548	printf "\n env-variables in configuration file \"\" "
549	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
550	printf "\n -M Makefile name Makefile"
551	printf "\n -n node usage (shared/not_shared) depending on -h"
552	printf "\n -o OUTPUT control list \"\" "
553	printf "\n -O use OpenMP ---"
554	printf "\n -p software package list \"\" "
555	printf "\n -q queue \"$queue\" "
556	printf "\n -r run control list (combines -i -o) \"\" "
557	printf "\n -s filenames of routines to be compiled \"\" "
558	printf "\n must end with .f, .f90, .F, or .c !"
559	printf "\n use \"..\" for more than one file and wildcards"
560	printf "\n -s TEST compiles all files with w-permit"
561	printf "\n -S config file interpreted by shellscript ---"
562	printf "\n -t allowed cpu-time in seconds (batch) 0"
563	printf "\n -T tasks per node depending on -h"
564	printf "\n -u username on remote machine \"\" "
565	printf "\n -v no prompt for confirmation ---"
566	printf "\n -x tracing of mrun for debug purposes ---"
567	printf "\n -X # of processors (on parallel machines) 1"
568	printf "\n -y add appendix \"_O\" to all local output"
569	printf "\n files (ocean precursor runs followed by"
570	printf "\n coupled atmosphere-ocean runs) ---"
571	printf "\n -Y run coupled model, \"#1 #2\" with"
572	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
573	printf "\n "
574	printf "\n Possible values of positional parameter <modus>:"
575	printf "\n \"?\" - this outline \n\n") \| more
576	exit
577	elif [[ "$1" != "" ]]
578	then
579	printf "\n +++ positional parameter $1 unknown \n"
580	locat=parameter; exit
581	fi
582
583
584
585	# KURZE STARTMELDUNG
586	printf "\n*** $version "
587	printf "\n will be executed. Please wait ..."
588
589
590
591	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
592	if [[ ! -f $config_file ]]
593	then
594	printf "\n\n +++ configuration file: "
595	printf "\n $config_file"
596	printf "\n does not exist"
597	locat=connect; exit
598	fi
599
600
601	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
602	line=""
603	grep "%host_identifier" $config_file > tmp_mrun
604	while read line
605	do
606	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
607	then
608	HOSTNAME=`echo $line \| cut -d" " -s -f2`
609	host_identifier=`echo $line \| cut -d" " -s -f3`
610	if [[ $localhost_realname = $HOSTNAME ]]
611	then
612	localhost=$host_identifier
613	break
614	fi
615	fi
616	done < tmp_mrun
617
618	if [[ "$localhost" = "" ]]
619	then
620	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
621	printf "\n for local host \"$localhost_realname\"."
622	printf "\n Please add line"
623	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
624	printf "\n to the configuration file."
625	locat=localhost; exit
626	fi
627
628
629	# HOSTSPEZIFISCHE VARIABLEN SETZEN
630	case $localhost_realname in
631	(r1\|r2\|h01\|b01) archive_system=tivoli;;
632	(cs*) archive_system=ut;;
633	(fimm.bccs.uib.no) fimm=true;;
634	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
635	(scirocco) scirocco=true;;
636	esac
637
638
639
640	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
641	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
642	[[ "$afname" = "" ]] && afname=$fname
643
644
645	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
646	if [[ "$run_mode" != "" ]]
647	then
648	input_list="$input_list $run_mode"
649	output_list="$output_list $run_mode"
650	fi
651
652
653	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
654	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
655	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
656	# STARTET)
657	if [[ "$fromhost" = "" ]]
658	then
659	fromhost=$localhost
660	fi
661
662
663	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
664	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
665	then
666	source_list=TEST
667	local_compile=true
668	host=$localhost
669	fi
670
671
672	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
673	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
674	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
675	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
676	if [[ -n $host && "$host" != $localhost ]]
677	then
678	do_batch=true
679	do_remote=true
680	case $host in
681	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
682	(*) printf "\n"
683	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
684	printf "\n is not available"
685	locat=nqs; (( iec = 0 )); exit;;
686	esac
687	else
688	host=$localhost
689	fi
690
691
692	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
693	if [[ -n $additional_conditions ]]
694	then
695	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
696	cond1=`echo $additional_conditions \| cut -d" " -f1`
697	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
698	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
699	if [[ -n $dummy ]]
700	then
701	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
702	locat=options; exit
703	fi
704	block=_$cond1
705	[[ -n $cond2 ]] && block=${block}_$cond2
706	fi
707
708
709	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
710	if [[ $run_coupled_model = true ]]
711	then
712
713	if [[ -n $coupled_dist ]]
714	then
715
716	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
717	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
718
719	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
720	then
721
722	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
723	printf "\n PEs (total) : $numprocs"
724	printf "\n PEs (atmosphere): $numprocs_atmos"
725	printf "\n PEs (ocean) : $numprocs_ocean"
726	locat=coupling; exit
727
728	fi
729
730	else
731
732	(( numprocs_ocean = $numprocs / 2 ))
733	(( numprocs_atmos = $numprocs / 2 ))
734
735	fi
736	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
737
738	# GET coupled_mode FROM THE CONFIG FILE
739	line=""
740	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
741	while read line
742	do
743	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
744	then
745	coupled_mode="mpi2"
746	fi
747	done < tmp_mrun
748
749	fi
750
751
752	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
753	# ARCHIVIERUNG FEHLGESCHLAGEN IST
754	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
755	then
756	if [[ $ignore_archive_error = false ]]
757	then
758	printf "\n +++ data archiving of previous run failed"
759	printf "\n see directory \~/job_queue on remote machine"
760	locat=archive; exit
761	else
762	printf "\n +++ warning: data archiving in a previous run failed"
763	printf "\n MRUN continues, trying to get backup copy"
764	fi
765	fi
766
767
768
769	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
770	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
771	if [[ "$read_from_config" = false ]]
772	then
773
774	[[ $silent = false ]] && printf "\n Reading the configuration file... "
775	while read zeile
776	do
777	[[ $silent = false ]] && printf "."
778
779
780	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
781	# ERSETZEN
782	eval zeile=\"$zeile\"
783
784
785	# INTERPRETATION DER ZEILE
786	if [[ "$(echo $zeile)" = "" ]]
787	then
788	# LEERZEILE, KEINE AKTION
789	continue
790
791	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
792	then
793
794	# ZEILE IST KOMMENTARZEILE
795	true
796
797	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
798	then
799
800	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
801	zeile=$(echo $zeile \| cut -c2-)
802	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
803	var=`echo $zeile \| cut -d" " -f1`
804	value=`echo $zeile \| cut -d" " -s -f2`
805	for_host=`echo $zeile \| cut -d" " -s -f3`
806	for_cond1=`echo $zeile \| cut -d" " -s -f4`
807	for_cond2=`echo $zeile \| cut -d" " -s -f5`
808
809	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
810	then
811
812	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
813	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
814	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
815
816
817	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
818	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
819	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
820	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
821	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
822	# KONFIGURATIONSDATEI
823	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
824	then
825	eval $var=\$value
826
827	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
828	if [[ $do_trace = true ]]
829	then
830	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
831	fi
832	fi
833
834	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
835	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
836	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
837	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
838	if [[ $var = host ]]
839	then
840	if [[ -n $host && "$host" != $localhost ]]
841	then
842	do_batch=true
843	do_remote=true
844	case $host in
845	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
846	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
847	printf "\n is not available"
848	locat=nqs; exit;;
849	esac
850	else
851	host=$localhost
852	fi
853	fi
854
855	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
856	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
857	# DEN PROGRAMMEN BENOETIGT WERDEN
858	export $var
859	fi
860
861
862
863
864	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
865	then
866
867	# ZEILE DEFINIERT ERROR-KOMMANDO
868	(( iec = iec + 1 ))
869	zeile=$(echo $zeile \| cut -c4-)
870	err_command[$iec]="$zeile"
871
872	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
873	then
874
875	# ZEILE DEFINIERT INPUT-KOMMANDO
876	(( iic = iic + 1 ))
877	zeile=$(echo $zeile \| cut -c4-)
878	in_command[$iic]="$zeile"
879
880	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
881	then
882
883	# ZEILE DEFINIERT OUTPUT-KOMMANDO
884	(( ioc = ioc + 1 ))
885	zeile=$(echo $zeile \| cut -c4-)
886	out_command[$ioc]="$zeile"
887
888	else
889
890	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
891	# s2a: in/out - Feld
892	# s2b: loc - Feld (optional)
893	# s2c: tr/ar - Feld (optional)
894	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
895	s1=`echo $zeile \| cut -d" " -f1`
896	s2=`echo $zeile \| cut -d" " -s -f2`
897	s2a=$(echo $s2 \| cut -d":" -f1)
898	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
899	then
900	s2b=""
901	s2c=""
902	else
903	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
904	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
905	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
906	fi
907	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
908	s3=`echo $zeile \| cut -d" " -f3`
909	s4=`echo $zeile \| cut -d" " -s -f4`
910	s5=`echo $zeile \| cut -d" " -s -f5`
911	s6=`echo $zeile \| cut -d" " -s -f6`
912
913
914	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
915	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
916	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
917	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
918	# HANDEN SEIN MUSS (D.H. s2b = loc)
919	IFSALT="$IFS"; IFS="$IFS:"
920	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
921	then
922	found=false
923	for actual in $input_list
924	do
925	for formal in $s3
926	do
927	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
928	done
929	done
930	if [[ $found = true ]]
931	then
932	(( iin = iin + 1 ))
933	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
934	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
935	extin[$iin]=$s6
936	fi
937	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
938	then
939	found=false
940	for actual in $output_list
941	do
942	for formal in $s3
943	do
944	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
945	done
946	done
947	if [[ $found = true ]]
948	then
949	(( iout = iout + 1 ))
950	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
951	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
952	fi
953	elif [[ "$s2a" != in && "$s2a" != out ]]
954	then
955	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
956	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
957	locat=connect; exit
958	fi
959	IFS="$IFSALT"
960	fi
961	done < $config_file
962
963	else
964
965
966	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
967	[[ $silent = false ]] && printf "..."
968	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
969	export interpreted_config_file=.icf.$RANDOM
970
971
972
973	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
974	# VERFUEGUNG STELLEN
975	cat > .mrun_environment << %%END%%
976	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
977	config_file = '$config_file', do_remote = '$do_remote',
978	do_trace = '$do_trace', host = '$host',
979	input_list = '$input_list', icf = '$interpreted_config_file',
980	localhost = '$localhost', output_list = '$output_list' /
981
982	%%END%%
983
984	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
985	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
986	mrun_memory=$memory
987	mrun_group_number=$group_number
988	mrun_cpumax=$cpumax
989	mrun_numprocs=$numprocs
990
991	if [[ $localhost_realname = "sx-fep" ]]
992	then
993	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
994	else
995
996	if [[ "$host" != $localhost ]]
997	then
998
999	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
1000	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
1001	if [[ $? != 0 ]]
1002	then
1003	printf "\n\n +++ no interpret_config found"
1004	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1005	locat=interpret_config; exit
1006	fi
1007	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1008	$interpret_config_executable
1009
1010	else
1011
1012	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1013	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1014	then
1015	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1016	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1017	locat=interpret_config; exit
1018	else
1019	interpret_config${block}.x
1020	fi
1021
1022	fi
1023	fi
1024	rm .mrun_environment
1025
1026
1027	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1028	chmod u+x $interpreted_config_file
1029	export PATH=$PATH:.
1030	. $interpreted_config_file
1031	rm $interpreted_config_file
1032
1033
1034	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1035	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1036	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1037	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1038	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1039
1040	fi
1041
1042
1043	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1044	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1045	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1046	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1047	if [[ "$SOURCES_COMPLETE" = "" ]]
1048	then
1049
1050	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1051	# VEREINBART WURDE
1052	source_path=""
1053	line=""
1054	grep "%source_path" $config_file > tmp_mrun
1055	while read line
1056	do
1057	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1058	then
1059	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1060	then
1061	global_source_path=`echo $line \| cut -d" " -f2`
1062	fi
1063	fi
1064	done < tmp_mrun
1065
1066	line=""
1067	found=false
1068	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1069	while read line
1070	do
1071	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1072	then
1073	if [[ $found = true ]]
1074	then
1075	printf "\n\n +++ more than one source path found in configuration file"
1076	printf "\n for local host \"$localhost\" "
1077	locat=source_path; exit
1078	fi
1079	source_path=`echo $line \| cut -d" " -f2`
1080	found=true
1081	fi
1082	done < tmp_mrun
1083	rm tmp_mrun
1084
1085	if [[ "$source_path" = "" ]]
1086	then
1087	if [[ "$global_source_path" != "" ]]
1088	then
1089	source_path=$global_source_path
1090	else
1091	printf "\n\n +++ no source path found in configuration file"
1092	printf "\n for local host \"$localhost\" "
1093	locat=source_path; exit
1094	fi
1095	fi
1096	eval source_path=$source_path
1097
1098	if [[ ! -d $source_path ]]
1099	then
1100	printf "\n\n +++ source path \"$source_path\" on local host"
1101	printf "\n \"$localhost\" does not exist"
1102	locat=source_path; exit
1103	fi
1104
1105	fi
1106
1107
1108	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1109	# DURCH OPTION -G MITGETEILT)
1110	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1111	then
1112	global_revision=`svnversion $source_path 2>/dev/null`
1113	global_revision="Rev: $global_revision"
1114	fi
1115
1116
1117	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1118	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1119	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1120	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1121	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1122	if [[ -n $host && "$host" != $localhost ]]
1123	then
1124	do_batch=true
1125	do_remote=true
1126	case $host in
1127	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
1128	(*) printf "\n"
1129	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1130	printf "\n is not available"
1131	locat=nqs; (( iec = 0 )); exit;;
1132	esac
1133	else
1134	host=$localhost
1135	fi
1136
1137
1138	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1139	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1140	then
1141
1142	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1143	if [[ ! -n $numprocs ]]
1144	then
1145	printf "\n"
1146	printf "\n +++ option \"-K parallel\" requires additional specification"
1147	printf "\n of the number of processors to be used by"
1148	printf "\n mrun-option \"-X\" or by environment-variable"
1149	printf "\n \"numprocs\" in the configuration file"
1150	locat=numprocs; (( iec = 0 )); exit
1151	fi
1152
1153	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1154	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1155	# GESAMTPROZESSORANZAHL IST
1156	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmkisti \|\| $host = ibms ]]
1157	then
1158	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1159	(( ival = $tasks_per_node ))
1160	(( pes = numprocs ))
1161	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1162	# then
1163	# (( pes = pes - 1 ))
1164	# fi
1165	(( ii = pes / ival ))
1166	if (( pes - ii * ival > 0 ))
1167	then
1168	printf "\n"
1169	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1170	printf "\n divisor of the total number of processors (option \"-X\")"
1171	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1172	locat=tasks_per_node; (( iec = 0 )); exit
1173	fi
1174	fi
1175
1176	# IBMY HAT NUR EINEN KNOTEN
1177	if [[ $host = ibmy ]]
1178	then
1179	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1180	then
1181	printf "\n"
1182	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1183	printf "\n total number of processors (option \"-X\")"
1184	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1185	locat=tasks_per_node; (( iec = 0 )); exit
1186	fi
1187	fi
1188
1189	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1190	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1191	# if [[ $use_openmp = true ]]
1192	# then
1193	# threads_per_task=$tasks_per_node
1194	# tasks_per_node=1
1195	# fi
1196
1197	# SETTINGS FOR SUBJOB-COMMAND
1198	TOPT="-T $tasks_per_node"
1199	OOPT="-O $threads_per_task"
1200
1201	# GESAMTZAHL DER KNOTEN BESTIMMEN
1202	if [[ "$tasks_per_node" != "" ]]
1203	then
1204	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1205	fi
1206
1207	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1208	# SETZEN
1209	if [[ $node_usage = default ]]
1210	then
1211	if [[ $host = ibms ]]
1212	then
1213	node_usage=shared
1214	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1215	then
1216	node_usage=singlejob
1217	else
1218	node_usage=not_shared
1219	fi
1220	fi
1221
1222	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1223	then
1224	printf "\n"
1225	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1226	printf "\n \"shared\" or \"not_shared\""
1227	locat=tasks_per_node; (( iec = 0 )); exit
1228	fi
1229
1230	fi
1231
1232	# PRUEFEN, OB HOSTFILE EXISTIERT
1233	if [[ -n $hostfile ]]
1234	then
1235	if [[ ! -f $hostfile ]]
1236	then
1237	printf "\n"
1238	printf "\n +++ hostfile \"$hostfile\" does not exist"
1239	locat=hostfile; exit
1240	fi
1241	fi
1242
1243	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1244	if [[ $host = ibmy && $do_remote = false ]]
1245	then
1246	if [[ ! -f $HOME/.rhosts ]]
1247	then
1248	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1249	printf "\n\n *** file:"
1250	printf "\n $HOME/.rhosts"
1251	printf "\n was created\n"
1252	fi
1253	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1254	then
1255	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1256	printf "\n\n *** file:"
1257	printf "\n $HOME/.rhosts"
1258	printf "\n was extended by the name of the current host\n"
1259	fi
1260	fi
1261
1262
1263
1264	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1265	if [[ $queue = none ]]
1266	then
1267	case $host in
1268	(ibmh) queue=no_class;;
1269	(ibmkisti) queue=class.32plus;;
1270	(ibmy) queue=parallel;;
1271	(lckyoto) queue=ph;;
1272	(lcsgib) queue=bigq;;
1273	(lcsgih) queue=bigq;;
1274	(lctit) queue=S;;
1275	(nech) queue=none;;
1276	(necriam) queue=SP;;
1277	(unics) queue=unics;;
1278	esac
1279	fi
1280
1281
1282	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1283	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1284	# ERMITTELN
1285	(( i = 0 ))
1286	while (( i < iin ))
1287	do
1288	(( i = i + 1 ))
1289	(( maxcycle = 0 ))
1290
1291	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1292	if [[ "${actionin[$i]}" = di ]]
1293	then
1294	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1295	# REM-MASCHINE AUSWERTEN
1296	eval filename=${pathin[$i]}/${endin[$i]}
1297	else
1298	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1299	# REM-MASCHINE AUSWERTEN
1300	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1301	fi
1302
1303	# PRUEFEN AUF VORHANDENSEIN
1304	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1305	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1306	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1307	then
1308	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1309	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1310	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1311	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1312	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1313	if [[ "${transin[$i]}" != "locopt" ]]
1314	then
1315	printf "\n\n +++ INPUT-file: "
1316	if [[ "${extin[$i]}" = "" ]]
1317	then
1318	printf "\n $filename"
1319	else
1320	printf "\n $filename.${extin[$i]}"
1321	fi
1322	printf "\n does not exist\n"
1323	locat=input; exit
1324	else
1325	transin[$i]="unavailable"
1326	fi
1327	else
1328
1329	# ZYKLUSNUMMER FESTSTELLEN
1330	ls -1 -d $filename > filelist 2>/dev/null
1331	ls -1 -d $filename.* >> filelist 2>/dev/null
1332	while read zeile
1333	do
1334	cycle=$(print $zeile \| cut -f2 -d".")
1335	if [[ "$cycle" = "$zeile" ]]
1336	then
1337	(( icycle = 0 ))
1338	elif [[ "$cycle" = "${extin[$i]}" ]]
1339	then
1340	(( icycle = 0 ))
1341	else
1342	(( icycle = $cycle ))
1343	fi
1344	if (( icycle > maxcycle ))
1345	then
1346	(( maxcycle = icycle ))
1347	file_to_be_used=$zeile
1348	fi
1349	done <filelist
1350	rm filelist
1351
1352	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1353	if (( maxcycle > 0 ))
1354	then
1355	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1356	then
1357	filename=${filename}.$maxcycle.${extin[$i]}
1358	else
1359	filename=${filename}.$maxcycle
1360	fi
1361	else
1362	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1363	then
1364	filename=${filename}.${extin[$i]}
1365	fi
1366	fi
1367
1368	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1369	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1370	absnamein[$i]=$filename
1371	if (( maxcycle > 0 ))
1372	then
1373	if [[ "${actionin[$i]}" = di ]]
1374	then
1375	frelin[$i]=${endin[$i]}.$maxcycle
1376	else
1377	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1378	fi
1379	else
1380	if [[ "${actionin[$i]}" = di ]]
1381	then
1382	frelin[$i]=${endin[$i]}
1383	else
1384	frelin[$i]=${afname}${endin[$i]}
1385	fi
1386	fi
1387
1388	fi
1389	done
1390
1391
1392	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1393	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1394	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1395	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1396	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1397	(( i = 0 ))
1398	while (( i < iout ))
1399	do
1400	(( i = i + 1 ))
1401	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1402	then
1403	if [[ "${actionout[$i]}" = tr ]]
1404	then
1405	actionout[$i]=""
1406	elif [[ "${actionout[$i]}" = trpe ]]
1407	then
1408	actionout[$i]=pe
1409	elif [[ "${actionout[$i]}" = tra ]]
1410	then
1411	actionout[$i]=a
1412	fi
1413	(( maxcycle = 0 ))
1414	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1415	eval catalogname=${pathout[$i]}
1416	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1417	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1418	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1419	then
1420
1421	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1422	if cat /dev/null > $filename
1423	then
1424	rm $filename
1425	else
1426
1427	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1428	if [[ ! -d $catalogname ]]
1429	then
1430	if mkdir -p $catalogname
1431	then
1432	printf "\n\n *** directory:"
1433	printf "\n $catalogname"
1434	printf "\n was created\n"
1435	else
1436	printf "\n\n +++ OUTPUT-file:"
1437	printf "\n $filename"
1438	printf "\n cannot be created, because directory does not exist"
1439	printf "\n and cannot be created either"
1440	printf "\n"
1441	locat=output ; exit
1442	fi 2>/dev/null
1443	else
1444	printf "\n\n +++ OUTPUT-file:"
1445	printf "\n $filename"
1446	printf "\n cannot be created, although directory exists"
1447	printf "\n"
1448	locat=output ; exit
1449	fi
1450	fi 2>/dev/null
1451	else
1452
1453	# ZYKLUSNUMMER FESTSTELLEN
1454	ls -1 -d $filename > filelist 2>/dev/null
1455	ls -1 -d $filename.* >> filelist 2>/dev/null
1456	while read zeile
1457	do
1458	cycle=$(print $zeile \| cut -f2 -d".")
1459	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1460	then
1461	(( icycle = 1 ))
1462	else
1463	(( icycle = $cycle + 1 ))
1464	fi
1465	if (( icycle > maxcycle ))
1466	then
1467	(( maxcycle = icycle ))
1468	fi
1469	done <filelist
1470	rm filelist
1471	fi
1472
1473	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1474	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1475	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1476	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1477	if [[ "${actionout[$i]}" != a ]]
1478	then
1479	if (( maxcycle > 0 ))
1480	then
1481	filename=${filename}.$maxcycle
1482	if cat /dev/null > $filename
1483	then
1484	rm $filename
1485	else
1486	printf "\n +++ OUTPUT-file:"
1487	printf "\n $filename"
1488	printf "\n cannot be created"
1489	locat=output ; exit
1490	fi
1491	fi
1492	else
1493	(( maxcycle = maxcycle - 1 ))
1494	if (( maxcycle > 0 ))
1495	then
1496	filename=${filename}.$maxcycle
1497	fi
1498	fi
1499
1500	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1501	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1502	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1503	pathout[$i]=$filename
1504	if (( maxcycle > 0 ))
1505	then
1506	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1507	else
1508	frelout[$i]=${fname}${endout[$i]}
1509	fi
1510
1511	fi
1512	done
1513
1514
1515	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1516	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1517	then
1518	if [[ "$dvr_inc" = "" ]]
1519	then
1520	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1521	printf "\n This is required for the dvrp_graphics package.\n"
1522	locat=dvr; exit
1523	fi
1524	if [[ "$dvr_lib" = "" ]]
1525	then
1526	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1527	printf "\n This is required for the dvrp_graphics package.\n"
1528	locat=dvr; exit
1529	fi
1530	fi
1531
1532
1533	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1534	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1535	# UEBERSETZT ZU WERDEN)
1536	if [[ "$mainprog" = "" && "$executable" = "" ]]
1537	then
1538	printf "\n +++ neither main program nor executable defined"
1539	locat=source; exit
1540	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1541	then
1542	printf "\n +++ main program as well as executable defined"
1543	locat=source; exit
1544	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1545	then
1546	do_compile=false
1547	fi
1548
1549
1550	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1551	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1552	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1553	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1554	then
1555	rm -rf SOURCES_FOR_RUN_$fname
1556	mkdir SOURCES_FOR_RUN_$fname
1557	fi
1558
1559
1560	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1561	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1562	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1563	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1564	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1565	then
1566
1567	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1568	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1569
1570
1571	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1572	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1573	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1574	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1575	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1576	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1577	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1578	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1579	# GESAMMELT
1580	if [[ "$source_list" = WRITE_PERMIT ]]
1581	then
1582
1583	source_list=""
1584	cd $source_path
1585
1586
1587	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1588	Names=$(ls -1 *.f90 2>&1)
1589	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1590	Names=$(ls -1 *.F90 2>&1)
1591	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1592	Names=$(ls -1 *.F 2>&1)
1593	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1594	Names=$(ls -1 *.f 2>&1)
1595	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1596	Names=$(ls -1 *.c 2>&1)
1597	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1598
1599
1600	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1601	for dateiname in $Filenames
1602	do
1603	if [[ -w $dateiname ]]
1604	then
1605	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1606	then
1607	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1608	source_list=$source_list"$dateiname "
1609	fi
1610	fi
1611	done
1612
1613	cd - > /dev/null
1614
1615
1616	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1617	then
1618
1619	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1620	source_list=""
1621	cd $source_path
1622
1623
1624	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1625	if [[ ! -d .svn ]]
1626	then
1627	printf "\n\n +++ source directory"
1628	printf "\n \"$source_path\" "
1629	printf "\n is not under control of \"subversion\"."
1630	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1631	fi
1632
1633
1634	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1635	Filenames=""
1636	svn status > tmp_mrun
1637	while read line
1638	do
1639	firstc=`echo $line \| cut -c1`
1640	if [[ $firstc = M \|\| $firstc = "?" ]]
1641	then
1642	Name=`echo "$line" \| cut -c8-`
1643	extension=`echo $Name \| cut -d. -f2`
1644	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1645	then
1646	Filenames="$Filenames "$Name
1647	fi
1648	fi
1649	done < tmp_mrun
1650
1651
1652	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1653	for dateiname in $Filenames
1654	do
1655	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1656	source_list=$source_list"$dateiname "
1657	done
1658
1659	cd - > /dev/null
1660
1661
1662	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1663	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1664	# VORHANDEN
1665	elif [[ "$source_list" != "" && $restart_run != true ]]
1666	then
1667
1668	cd $source_path
1669
1670	for filename in $source_list
1671	do
1672
1673	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1674	if [[ $(print $filename \| grep -c "/") != 0 ]]
1675	then
1676	printf "\n +++ source code file: $filename"
1677	printf "\n must not contain (\"/\") "
1678	locat=source; exit
1679	fi
1680
1681	if [[ ! -f $filename ]]
1682	then
1683	printf "\n +++ source code file: $filename"
1684	printf "\n does not exist"
1685	locat=source; exit
1686	else
1687	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1688	fi
1689
1690	done
1691
1692	cd - > /dev/null
1693
1694	fi
1695
1696
1697	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1698	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1699	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1700	if [[ $restart_run != true ]]
1701	then
1702
1703	if [[ ! -f "$source_path/$mainprog" ]]
1704	then
1705	printf "\n\n +++ main program: $mainprog"
1706	printf "\n does not exist in source directory"
1707	printf "\n \"$source_path\"\n"
1708	locat=source; exit
1709	else
1710	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1711	then
1712	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1713	source_list=${mainprog}" $source_list"
1714	fi
1715	fi
1716	fi
1717
1718
1719	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1720	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1721	if [[ "$restart_run" != true ]]
1722	then
1723	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1724	if [[ ! -f $makefile ]]
1725	then
1726	printf "\n +++ file \"$makefile\" does not exist"
1727	locat=make; exit
1728	else
1729	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1730	fi
1731	fi
1732
1733
1734	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1735	if [[ $restart_run != true && "$add_source_path" != "" ]]
1736	then
1737
1738	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1739	if [[ ! -d $add_source_path ]]
1740	then
1741	printf "\n\n +++ WARNING: additional source code directory"
1742	printf "\n \"$add_source_path\" "
1743	printf "\n does not exist or is not a directory."
1744	printf "\n No source code will be used from this directory!\n"
1745	add_source_path=""
1746	sleep 3
1747	else
1748
1749	cd $add_source_path
1750	found=false
1751
1752	Names=$(ls -1 *.f90 2>&1)
1753	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1754	Names=$(ls -1 *.F90 2>&1)
1755	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1756	Names=$(ls -1 *.F 2>&1)
1757	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1758	Names=$(ls -1 *.f 2>&1)
1759	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1760	Names=$(ls -1 *.c 2>&1)
1761	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1762
1763	cd - > /dev/null
1764	cd SOURCES_FOR_RUN_$fname
1765
1766	# COPY MAKEFILE IF EXISTING
1767	if [[ -f $add_source_path/Makefile ]]
1768	then
1769	printf "\n\n *** user Makefile from directory"
1770	printf "\n \"$add_source_path\" is used \n"
1771	sleep 1
1772	cp $add_source_path/Makefile .
1773	fi
1774
1775	for dateiname in $AddFilenames
1776	do
1777	if [[ -f $dateiname ]]
1778	then
1779	printf "\n +++ source code file \"$dateiname\" found in additional"
1780	printf "\n source code directory \"$add_source_path\" "
1781	printf "\n but was also given with option \"-s\" which means that it should be taken"
1782	printf "\n from directory \"$source_path\"."
1783	locat=source; exit
1784	fi
1785
1786	cp $add_source_path/$dateiname .
1787	source_list="$source_list $dateiname"
1788
1789	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1790	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1791	then
1792	printf "\n\n +++ user file \"$dateiname\" "
1793	printf "\n is not listed in Makefile \n"
1794	locat=source; exit
1795	else
1796
1797	# Default User-Interface von der Liste entfernen, falls Datei
1798	# ein User-Interface enthaelt
1799	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1800	# then
1801	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1802	# then
1803	# rm -rf user_interface.f90
1804	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1805	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1806	# printf "\n since a user-interface is found in file"
1807	# printf "\n \"$add_source_path/$dateiname\" \n"
1808	# sleep 3
1809	# else
1810	if [[ $found = false ]]
1811	then
1812	found=true
1813	printf "\n\n *** following user file(s) added to the"
1814	printf " files to be translated:\n "
1815	fi
1816	printf "$dateiname "
1817	sleep 0.5
1818	fi
1819	done
1820	[[ $found = true ]] && printf "\n"
1821	cd - > /dev/null
1822	fi
1823	fi
1824
1825
1826	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1827	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1828	if [[ $restart_run != true && -n $package_list ]]
1829	then
1830
1831	cd $source_path
1832
1833	for package in $package_list
1834	do
1835
1836	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1837
1838	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1839	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1840	# LIEFERT
1841	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1842
1843
1844	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1845	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1846	for source_list_name in $package_source_list
1847	do
1848	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1849	then
1850
1851	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1852	ending=`echo $source_list_name \| cut -f2 -d.`
1853	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1854	then
1855	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1856	source_list="$source_list $source_list_name"
1857	fi
1858	fi
1859	done
1860	done
1861
1862	cd - > /dev/null
1863	fi
1864
1865
1866	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1867	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1868	# if [[ "$restart_run" != true ]]
1869	# then
1870	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1871	# if [[ ! -f $makefile ]]
1872	# then
1873	# printf "\n +++ file \"$makefile\" does not exist"
1874	# locat=make; exit
1875	# else
1876	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1877	# fi
1878	# fi
1879
1880	fi # do_compile=true
1881
1882
1883	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1884	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1885	if [[ $do_compile = true ]]
1886	then
1887
1888	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1889	# ZUSAMMENSETZEN
1890	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1891	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1892	then
1893	cpp_options="${cpp_options},-D__ibm=__ibm"
1894	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1895	then
1896	cpp_options="$cpp_options -D__nec"
1897	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1898	then
1899	cpp_options="$cpp_options -D__lc"
1900	else
1901	cpp_options="$cpp_options -D__$localhost"
1902	fi
1903
1904	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1905	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1906	then
1907	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1908	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1909	else
1910	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1911	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1912	fi
1913
1914	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1915	if [[ -n $package_list ]]
1916	then
1917	for package in $package_list
1918	do
1919	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1920	then
1921	if [[ $package != "dvrp_graphics+1PE" ]]
1922	then
1923	cpp_options="${cpp_options},-D__$package=__$package"
1924	else
1925	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1926	export use_seperate_pe_for_dvrp_output=true
1927	fi
1928	else
1929	if [[ $package != "dvrp_graphics+1PE" ]]
1930	then
1931	cpp_options="$cpp_options -D__$package"
1932	else
1933	cpp_options="$cpp_options -D__dvrp_graphics"
1934	export use_seperate_pe_for_dvrp_output=true
1935	fi
1936	fi
1937	done
1938	fi
1939
1940	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1941	if [[ -n $cpp_opts ]]
1942	then
1943	for popts in $cpp_opts
1944	do
1945	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1946	then
1947	cpp_options="${cpp_options},-D__$popts=__$popts"
1948	else
1949	cpp_options="$cpp_options -D__$popts"
1950	fi
1951	done
1952	fi
1953
1954	else
1955
1956
1957	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1958	if [[ $do_remote = false ]]
1959	then
1960	if [[ ! -f $executable ]]
1961	then
1962	printf "\n +++ executable file: $executable"
1963	printf "\n does not exist"
1964	locat=executable; exit
1965	fi
1966	fi
1967	fi
1968
1969
1970	# JOBMODUS FESTSTELLEN
1971	if [[ "$ENVIRONMENT" = BATCH ]]
1972	then
1973	jobmo=BATCH
1974	else
1975	jobmo=INTERACTIVE
1976	fi
1977
1978
1979	# no interactive runs on lctit
1980	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1981	then
1982	printf "\n +++ no interactive runs allowed on host \"$host\" "
1983	printf "\n please submit batch job using mrun option \"-b\" \n"
1984	locat=normal; exit
1985	fi
1986
1987
1988	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1989	# DURCH BENUTZER ANDERWEITIG VEREINBART
1990	if [[ "$compiler_name" = "" ]]
1991	then
1992
1993	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1994	locat=compiler_name; exit
1995
1996	fi
1997
1998
1999	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
2000	[[ $localhost = necriam ]] && compiler_name=mpif90
2001
2002
2003
2004	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
2005	kennung=$RANDOM
2006	if [[ "$tmp_user_catalog" = "" ]]
2007	then
2008	if [[ $localhost = ibmh ]]
2009	then
2010	tmp_user_catalog=$SCRATCH
2011	elif [[ $localhost = nech ]]
2012	then
2013	tmp_user_catalog=$WRKSHR
2014	else
2015	tmp_user_catalog=/tmp
2016	fi
2017	fi
2018	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2019
2020
2021	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2022	# BESTIMMEN
2023	if [[ "$tmp_data_catalog" = "" ]]
2024	then
2025	if [[ $localhost = nech ]]
2026	then
2027	tmp_data_catalog=$WRKSHR/mrun_restart_data
2028	else
2029	tmp_data_catalog=/tmp/mrun_restart_data
2030	fi
2031	fi
2032
2033
2034	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2035	# ERSETZEN
2036	if [[ $do_remote = false && $do_compile = true ]]
2037	then
2038	eval fopts=\"$fopts\"
2039	eval lopts=\"$lopts\"
2040	fi
2041
2042
2043
2044	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2045	fopts="$fopts $netcdf_inc $dvr_inc"
2046	lopts="$lopts $netcdf_lib $dvr_lib"
2047	ROPTS="$ropts"
2048	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
2049	then
2050	XOPT="-X $numprocs"
2051	fi
2052
2053
2054
2055	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2056	# GRAMM BENOETIGT
2057	done=false
2058	while [[ $done = false ]]
2059	do
2060	cputime=$cpumax
2061	if (( $cputime == 0 ))
2062	then
2063	if [[ $do_batch = true ]]
2064	then
2065	printf "\n +++ cpu-time is undefined"
2066	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2067	printf "\n >>> "
2068	read cputime 1>/dev/null 2>&1
2069	else
2070	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2071	fi
2072	else
2073	done=true
2074	fi
2075	cpumax=$cputime
2076	done
2077
2078	(( minuten = cputime / 60 ))
2079	(( sekunden = cputime - minuten * 60 ))
2080
2081
2082	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2083	if [[ $do_batch = true ]]
2084	then
2085	done=false
2086	while [[ $done = false ]]
2087	do
2088	if (( memory == 0 ))
2089	then
2090	printf "\n +++ memory demand is undefined"
2091	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2092	printf "\n >>> "
2093	read memory 1>/dev/null 2>&1
2094	else
2095	done=true
2096	fi
2097	done
2098	fi
2099
2100
2101	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2102	if [[ $do_remote = true && -z $remote_username ]]
2103	then
2104	while [[ -z $remote_username ]]
2105	do
2106	printf "\n +++ username on remote host \"$host\" is undefined"
2107	printf "\n >>> Please type username:"
2108	printf "\n >>> "
2109	read remote_username
2110	done
2111	mc="$mc -u$remote_username"
2112	fi
2113
2114
2115	# set module load command and export for subjob
2116	if [[ "$modules" != "" ]]
2117	then
2118	if [[ $host = lctit ]]
2119	then
2120	export module_calls=". $modules"
2121	else
2122	export module_calls="module load ${modules};"
2123	fi
2124	fi
2125
2126	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2127	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2128	then
2129	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2130	then
2131	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2132	fi
2133	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2134	# then
2135	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2136	# echo "*** module_calls = $module_calls"
2137	# fi
2138	fi
2139
2140
2141	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2142	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2143	then
2144	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2145	then
2146	mpilib=mpt
2147	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2148	then
2149	mpilib=mvapich
2150	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2151	then
2152	mpilib=impi
2153	fi
2154	fi
2155
2156
2157
2158	###########################################################################
2159	# HEADER-AUSGABE
2160	###########################################################################
2161
2162
2163	calltime=$(date)
2164	printf "\n"
2165	# [[ $silent = false ]] && clear
2166	printf "#--------------------------------------------------------------# \n"
2167	printf "\| $version$calltime \| \n"
2168	printf "\| \| \n"
2169	spalte1="called on:"; spalte2=$localhost_realname
2170	printf "\| $spalte1$spalte2 \| \n"
2171	if [[ $local_compile = false ]]
2172	then
2173	if [[ $do_remote = true ]]
2174	then
2175	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2176	else
2177	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2178	fi
2179	else
2180	spalte1="compiling test only!"; spalte2=""
2181	fi
2182	printf "\| $spalte1$spalte2 \| \n"
2183	if [[ -n $numprocs ]]
2184	then
2185	spalte1="number of PEs:"; spalte2=$numprocs
2186	printf "\| $spalte1$spalte2 \| \n"
2187	fi
2188	if [[ -n $tasks_per_node ]]
2189	then
2190	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2191	printf "\| $spalte1$spalte2 \| \n"
2192	fi
2193	if [[ $use_openmp = true ]]
2194	then
2195	spalte1="threads per task:"; spalte2="$threads_per_task"
2196	printf "\| $spalte1$spalte2 \| \n"
2197	fi
2198	printf "\| \| \n"
2199	if [[ $do_compile = true ]]
2200	then
2201	if [[ "$mopts" != "" ]]
2202	then
2203	spalte1="make options:"; spalte2=$mopts
2204	printf "\| $spalte1$spalte2 \| \n"
2205	zeile=$(echo "$mopts" \| cut -c41-)
2206	while [[ "$zeile" != "" ]]
2207	do
2208	spalte1=""
2209	spalte2=$zeile
2210	printf "\| $spalte1$spalte2 \| \n"
2211	zeile=$(echo "$zeile" \| cut -c41-)
2212	done
2213	fi
2214
2215	spalte1="cpp directives:"; spalte2=$cpp_options
2216	printf "\| $spalte1$spalte2 \| \n"
2217	zeile=$(echo "$cpp_options" \| cut -c41-)
2218	while [[ "$zeile" != "" ]]
2219	do
2220	spalte1=""
2221	spalte2=$zeile
2222	printf "\| $spalte1$spalte2 \| \n"
2223	zeile=$(echo "$zeile" \| cut -c41-)
2224	done
2225
2226	spalte1="compiler options:"; spalte2="$fopts"
2227	printf "\| $spalte1$spalte2 \| \n"
2228	zeile=$(echo "$fopts" \| cut -c41-)
2229	while [[ "$zeile" != "" ]]
2230	do
2231	spalte1=""
2232	spalte2=$zeile
2233	printf "\| $spalte1$spalte2 \| \n"
2234	zeile=$(echo "$zeile" \| cut -c41-)
2235	done
2236
2237	spalte1="linker options:"; spalte2=$lopts
2238	printf "\| $spalte1$spalte2 \| \n"
2239	zeile=$(echo "$lopts" \| cut -c41-)
2240	while [[ "$zeile" != "" ]]
2241	do
2242	spalte1=""
2243	spalte2=$zeile
2244	printf "\| $spalte1$spalte2 \| \n"
2245	zeile=$(echo "$zeile" \| cut -c41-)
2246	done
2247
2248	spalte1="modules to be load:"; spalte2=$modules
2249	printf "\| $spalte1$spalte2 \| \n"
2250	zeile=$(echo "$modules" \| cut -c41-)
2251	while [[ "$zeile" != "" ]]
2252	do
2253	spalte1=""
2254	spalte2=$zeile
2255	printf "\| $spalte1$spalte2 \| \n"
2256	zeile=$(echo "$zeile" \| cut -c41-)
2257	done
2258
2259	spalte1="main program":; spalte2=$mainprog
2260	printf "\| $spalte1$spalte2 \| \n"
2261	else
2262	spalte1=executable:; spalte2=$executable
2263	printf "\| $spalte1$spalte2 \| \n"
2264	fi
2265	printf "\| \| \n"
2266	spalte1="base name of files":; spalte2=$fname
2267	printf "\| $spalte1$spalte2 \| \n"
2268	if [[ $fname != $afname ]]
2269	then
2270	spalte1="base name of input files":; spalte2=$afname
2271	printf "\| $spalte1$spalte2 \| \n"
2272	fi
2273	spalte1="INPUT control list":; spalte2=$input_list
2274	printf "\| $spalte1$spalte2 \| \n"
2275	spalte1="OUTPUT control list":; spalte2=$output_list
2276	printf "\| $spalte1$spalte2 \| \n"
2277
2278	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2279	then
2280	spalte1="memory demand / PE":; spalte2="$memory MB"
2281	printf "\| $spalte1$spalte2 \| \n"
2282	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2283	printf "\| $spalte1$spalte2 \| \n"
2284	fi
2285
2286	if [[ $do_compile = true ]]
2287	then
2288	printf "\| \| \n"
2289	printf "\| Files to be compiled: \| \n"
2290	zeile=$source_list
2291	while [[ "$zeile" != "" ]]
2292	do
2293	spalte3=$zeile
2294	printf "\| $spalte3 \| \n"
2295	zeile=$(echo "$zeile" \| cut -c61-)
2296	done
2297	fi
2298	printf "#--------------------------------------------------------------#"
2299
2300
2301
2302	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2303	if [[ $do_trace = true ]]
2304	then
2305	(( i = 0 ))
2306	while (( i < iin ))
2307	do
2308	(( i = i + 1 ))
2309	if (( i == 1 ))
2310	then
2311	printf "\n\n >>> INPUT-file assignments:\n"
2312	fi
2313	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2314	done
2315	(( i = 0 ))
2316	while (( i < iout ))
2317	do
2318	(( i = i + 1 ))
2319	if (( i == 1 ))
2320	then
2321	printf "\n\n >>> OUTPUT-file assignments:\n"
2322	fi
2323	printf "\n ${localout[$i]} : ${pathout[$i]}"
2324	done
2325	(( i = 0 ))
2326	while (( i < iic ))
2327	do
2328	(( i = i + 1 ))
2329	if (( i == 1 ))
2330	then
2331	printf "\n\n >>> INPUT-commands:\n"
2332	fi
2333	printf "\n ${in_command[$i]}"
2334	done
2335	(( i = 0 ))
2336	while (( i < ioc ))
2337	do
2338	(( i = i + 1 ))
2339	if (( i == 1 ))
2340	then
2341	printf "\n\n >>> OUTPUT-commands:\n"
2342	fi
2343	printf "\n ${out_command[$i]}"
2344	done
2345	fi
2346
2347
2348	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2349	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2350	then
2351	antwort=dummy
2352	printf "\n\n"
2353	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2354	do
2355	printf " >>> everything o.k. (y/n) ? "
2356	read antwort
2357	done
2358	if [[ $antwort = n \|\| $antwort = N ]]
2359	then
2360	locat=user_abort; (( iec = 0 )); exit
2361	fi
2362	if [[ $do_batch = true ]]
2363	then
2364	printf " >>> batch-job will be created and submitted"
2365	else
2366	if [[ $local_compile = false ]]
2367	then
2368	printf " >>> MRUN will now continue to execute on this machine"
2369	else
2370	printf " >>> a test compilation will now be carried out on this machine"
2371	fi
2372	fi
2373	fi
2374
2375
2376
2377
2378	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2379	# CHENDE AKTIONEN DURCHGEFUEHRT
2380	if [[ $do_batch = false ]]
2381	then
2382
2383
2384	# TEMPORAEREN KATALOG ERZEUGEN
2385	mkdir -p $TEMPDIR
2386	chmod go+rx $TEMPDIR
2387	tmpcreate=true
2388
2389	# set striping on lustre file system
2390	# if [[ $localhost = lcsgih ]]
2391	# then
2392	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2393	# lfs getstripe $TEMPDIR
2394	# fi
2395
2396
2397	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2398	# TEMPORAERES VERZEICHNIS KOPIEREN
2399	if [[ $do_compile = true ]]
2400	then
2401
2402	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2403	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2404	if [[ $localhost = nech ]]
2405	then
2406	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2407	if mkdir -p $TEMPDIR_COMPILE
2408	then
2409	printf "\n *** \"$TEMPDIR_COMPILE\" "
2410	printf "\n is generated as temporary directory for cross compiling\n"
2411	else
2412	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2413	printf "\n needed for cross compilation failed"
2414	locat=compile
2415	exit
2416	fi
2417	else
2418	TEMPDIR_COMPILE=$TEMPDIR
2419	fi
2420
2421
2422	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2423	line=""
2424	grep "%depository_path" $config_file > tmp_mrun
2425	while read line
2426	do
2427	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2428	then
2429	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2430	then
2431	global_depository_path=`echo $line \| cut -d" " -s -f2`
2432	fi
2433	fi
2434	done < tmp_mrun
2435
2436	line=""
2437	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2438	while read line
2439	do
2440	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2441	then
2442	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2443	then
2444	local_depository_path=`echo $line \| cut -d" " -s -f2`
2445	fi
2446	fi
2447	done < tmp_mrun
2448
2449	if [[ "$local_depository_path" = "" ]]
2450	then
2451	if [[ "$global_depository_path" != "" ]]
2452	then
2453	local_depository_path=$global_depository_path
2454	else
2455	printf "\n\n +++ no depository path found in configuration file"
2456	printf "\n for local host \"$localhost\" "
2457	printf "\n please set \"\%depository_path\" in configuration file\n"
2458	locat=config_file; exit
2459	fi
2460	fi
2461	eval local_depository_path=$local_depository_path
2462	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2463	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2464
2465
2466	basename=`print $mainprog \| cut -f1 -d"."`
2467	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2468	if [[ ! -f $make_depository ]]
2469	then
2470	printf "\n"
2471	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2472	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2473	else
2474	cp $make_depository $TEMPDIR_COMPILE
2475	cd $TEMPDIR_COMPILE
2476	tar -xf $make_depository > /dev/null 2>&1
2477	cd - > /dev/null
2478	fi
2479
2480	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2481
2482	else
2483
2484	cp $executable ${TEMPDIR}/a.out
2485
2486	fi
2487
2488
2489	# WECHSEL IN TEMPORAEREN KATALOG
2490	cd $TEMPDIR
2491	printf "\n *** changed to temporary directory: $TEMPDIR"
2492
2493
2494	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2495	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2496	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2497	# ERMITTELN
2498	(( i = 0 ))
2499	while (( i < iout ))
2500	do
2501	(( i = i + 1 ))
2502	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2503	then
2504	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2505	else
2506	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2507	fi
2508	done
2509
2510
2511	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2512	if [[ $do_compile = true ]]
2513	then
2514
2515
2516	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2517	printf "\n\n\n *** compilation starts \n$striche\n"
2518	printf " *** compilation with make using following options:\n"
2519	printf " make depository: $make_depository"
2520	if [[ "$mopts" != "" ]]
2521	then
2522	printf " make options: $mopts\n"
2523	fi
2524	printf " compilername: $compiler_name\n"
2525	printf " compiler options: $fopts\n"
2526	printf " preprocessor directives: $cpp_options \n"
2527	printf " linker options: $lopts \n"
2528	if [[ "$modules" != "" ]]
2529	then
2530	printf " modules to be load: $modules \n"
2531	fi
2532	printf " source code files: $source_list \n"
2533
2534	if [[ $localhost = nech ]]
2535	then
2536	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2537	cp $TEMPDIR_COMPILE/a.out .
2538	[[ $? != 0 ]] && compile_error=true
2539	rm -rf $TEMPDIR_COMPILE
2540	elif [[ $localhost = ibmh ]]
2541	then
2542	printf " compiler is called via ssh on \"plogin1\" \n"
2543	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2544	[[ ! -f a.out ]] && compile_error=true
2545	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2546	elif [[ $localhost = lcsgib ]]
2547	then
2548	printf " compiler is called via ssh on \"bicegate0\" \n"
2549	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2550	[[ ! -f a.out ]] && compile_error=true
2551	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2552	elif [[ $localhost = lcsgih ]]
2553	then
2554	printf " compiler is called via ssh on \"hicegate0\" \n"
2555	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2556	[[ ! -f a.out ]] && compile_error=true
2557	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2558	else
2559	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2560	[[ "$module_calls" != "" ]] && eval $module_calls
2561	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2562	fi
2563
2564	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2565	then
2566	printf "\n +++ error occured while compiling or linking"
2567	locat=compile
2568
2569	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2570	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2571	# then
2572	exit
2573	# else
2574	# locat=normal
2575	# fi
2576	else
2577	printf "$striche\n *** compilation finished \n"
2578	fi
2579	fi
2580
2581
2582	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2583	if [[ $local_compile = true ]]
2584	then
2585	cd $HOME
2586	rm -rf $TEMPDIR
2587	locat=local_compile; exit
2588	fi
2589
2590
2591	# BEREITSTELLEN DER INPUT-DATEIEN
2592	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2593	(( i = 0 ))
2594	while (( i < iin ))
2595	do
2596	(( i = i + 1 ))
2597	if (( i == 1 ))
2598	then
2599	printf "\n\n *** providing INPUT-files:\n$striche"
2600	fi
2601
2602
2603	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2604	if [[ "${transin[$i]}" = unavailable ]]
2605	then
2606	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2607	then
2608	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2609	printf "\n is not available!"
2610	else
2611	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2612	printf "\n is not available!"
2613	fi
2614	continue
2615	fi
2616
2617	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2618	files_for_pes=false; datentyp=file
2619	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2620	then
2621	files_for_pes=true; datentyp=directory
2622	actionin[$i]=""
2623	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2624	then
2625	actionin[$i]=""
2626	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2627	then
2628	files_for_pes=true; datentyp=directory
2629	actionin[$i]="ar"
2630	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2631	then
2632	actionin[$i]="ar"
2633	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2634	then
2635	files_for_pes=true; datentyp=directory
2636	actionin[$i]="fl"
2637	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2638	then
2639	actionin[$i]="fl"
2640	fi
2641
2642	if [[ $files_for_pes = true ]]
2643	then
2644	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2645	else
2646	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2647	fi
2648
2649	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2650	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2651	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2652	# SERVER ZU HOLEN
2653	if [[ "${actionin[$i]}" = fl ]]
2654	then
2655	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2656	if [[ $files_for_pes = false ]]
2657	then
2658	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2659	then
2660	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2661	got_tmp[$i]=true
2662	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2663	then
2664	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2665	printf "\n *** trying to use backup copy in \"$WORK\" "
2666	cp $WORK/${frelin[$i]} ${localin[$i]}
2667	else
2668	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2669	printf "\n or \"$tmp_data_catalog\" does not exist!"
2670	printf "\n *** trying to get copy from archive"
2671	actionin[$i]=ar
2672	fi
2673	else
2674	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2675	then
2676	mkdir ${localin[$i]}
2677	cd $tmp_data_catalog/${frelin[$i]}
2678	for file in $(ls *)
2679	do
2680	ln $file $TEMPDIR/${localin[$i]}
2681	done
2682	cd $TEMPDIR
2683	got_tmp[$i]=true
2684	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2685	then
2686	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2687	printf "\n *** trying to use backup copy in \"$WORK\" "
2688	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2689	else
2690	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2691	printf "\n or \"$tmp_data_catalog\" does not exist!"
2692	printf "\n *** trying to get copy from archive"
2693	actionin[$i]=ar
2694	fi
2695	fi
2696	fi
2697
2698
2699	# DATEI LIEGT AUF ARCHIV-SERVER
2700	if [[ "${actionin[$i]}" = ar ]]
2701	then
2702
2703	if [[ $files_for_pes = false ]]
2704	then
2705	printf "\n file will be restored from archive-system ($archive_system)!"
2706	else
2707	printf "\n directory will be restored from archive-system ($archive_system)!"
2708	fi
2709
2710	file_restored=false
2711
2712	if [[ $archive_system = asterix ]]
2713	then
2714	do_stagein=true
2715	(( stagein_anz = 0 ))
2716	while [[ $do_stagein = true ]]
2717	do
2718	if [[ $files_for_pes = false ]]
2719	then
2720	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2721	else
2722	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2723	fi
2724	cat STAGEIN_OUTPUT
2725	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2726	then
2727	file_restored=true
2728	do_stagein=false
2729	else
2730	(( stagein_anz = stagein_anz + 1 ))
2731	if (( stagein_anz == 10 ))
2732	then
2733	printf "\n +++ stagein stoped after 10 tries"
2734	locat=stage
2735	exit
2736	fi
2737	printf "\n +++ restoring from archive failed, trying again:"
2738	sleep 900
2739	fi
2740	done
2741	elif [[ $archive_system = DMF ]]
2742	then
2743	if [[ $files_for_pes = false ]]
2744	then
2745	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2746	locat=DMF
2747	exit
2748	else
2749	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2750	cp -r $ARCHIVE/${frelin[$i]} $PWD
2751	file_restored=true
2752	fi
2753	elif [[ $archive_system = tivoli ]]
2754	then
2755	if [[ $files_for_pes = false ]]
2756	then
2757	if [[ $localhost = lcsgih ]]
2758	then
2759	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2760	else
2761	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2762	fi
2763	else
2764	(( inode = 0 ))
2765	while (( inode < nodes ))
2766	do
2767	if [[ $localhost = lcsgih ]]
2768	then
2769	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2770	else
2771	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2772	fi
2773	(( inode = inode + 1 ))
2774	done
2775	fi
2776	file_restored=true
2777	elif [[ $archive_system = ut ]]
2778	then
2779	if [[ $files_for_pes = false ]]
2780	then
2781	cp $UT/${frelin[$i]} .
2782	else
2783	(( inode = 0 ))
2784	while (( inode < nodes ))
2785	do
2786	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2787	(( inode = inode + 1 ))
2788	done
2789	fi
2790	file_restored=true
2791	else
2792	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2793	locat=rearchive
2794	exit
2795	fi
2796
2797	if [[ $file_restored = true ]]
2798	then
2799
2800	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2801	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2802	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2803	if [[ $files_for_pes = false ]]
2804	then
2805	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2806	else
2807	mkdir $tmp_data_catalog/${frelin[$i]}
2808	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2809	fi
2810	got_tmp[$i]=true
2811
2812	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2813	mv ${frelin[$i]} ${localin[$i]}
2814
2815	fi
2816	fi
2817
2818
2819	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2820	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2821	then
2822
2823	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2824	then
2825
2826	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2827	printf "\n file will be provided for $numprocs processors"
2828	mkdir ${localin[$i]}
2829	ival=$numprocs
2830	(( ii = 0 ))
2831	while (( ii <= ival-1 ))
2832	do
2833	if (( ii < 10 ))
2834	then
2835	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2836	elif (( ii < 100 ))
2837	then
2838	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2839	elif (( ii < 1000 ))
2840	then
2841	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2842	else
2843	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2844	fi
2845	(( ii = ii + 1 ))
2846	done
2847
2848	else
2849
2850	if [[ $files_for_pes = true ]]
2851	then
2852
2853	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2854	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2855	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2856	# PER MOVE UMBENANNT WERDEN
2857	printf "\n providing $numprocs files for the respective processors"
2858	mkdir ${localin[$i]}
2859	if [[ $link_local_input = true ]]
2860	then
2861	printf " using ln -f\n"
2862	cd ${absnamein[$i]}
2863	for file in $(ls *)
2864	do
2865	ln -f $file ${localin[$i]}
2866	done
2867	cd $TEMPDIR
2868	fi
2869	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2870	if [[ ! -f "${localin[$i]}/_0000" ]]
2871	then
2872	if [[ $link_local_input = true ]]
2873	then
2874	printf " ln failed for .../_0000, using cp...\n"
2875	fi
2876	cp -r ${absnamein[$i]}/* ${localin[$i]}
2877	fi
2878
2879	else
2880	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2881	if [[ $link_local_input = true ]]
2882	then
2883	printf " using ln -f\n"
2884	ln -f ${absnamein[$i]} ${localin[$i]}
2885	fi
2886	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2887	if [[ ! -f "${localin[$i]}" ]]
2888	then
2889	if [[ $link_local_input = true ]]
2890	then
2891	printf " ln failed, using cp...\n"
2892	fi
2893	cp ${absnamein[$i]} ${localin[$i]}
2894	fi
2895	fi
2896	fi
2897	fi
2898
2899	done
2900	if (( i != 0 ))
2901	then
2902	printf "\n$striche\n *** all INPUT-files provided \n"
2903	fi
2904
2905
2906	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2907	(( i = 0 ))
2908	while (( i < iic ))
2909	do
2910	(( i = i + 1 ))
2911	if (( i == 1 ))
2912	then
2913	printf "\n\n *** execution of INPUT-commands:\n$striche"
2914	fi
2915	printf "\n >>> ${in_command[$i]}"
2916	eval ${in_command[$i]}
2917	if (( i == iic ))
2918	then
2919	printf "\n$striche\n"
2920	fi
2921	done
2922
2923
2924	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2925	cpurest=${cpumax}.
2926
2927
2928	# START DVR STREAMING SERVER
2929	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2930	then
2931	if [[ "$dvr_server" != "" ]]
2932	then
2933
2934	printf "\n\n *** preparing the dvr streaming server configuration file"
2935
2936	# Check, if a dvr server is already running
2937	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2938	if [[ "$running_dvrserver_id" != "" ]]
2939	then
2940
2941	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2942	printf "\n This server is used instead starting a new one!"
2943	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2944
2945	else
2946
2947	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2948	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2949	then
2950	cp ${PALM_BIN}/.dvrserver.config .
2951
2952	# Entering the BASEDIR, UID and GID into this file
2953	user_id=`id -u`
2954	group_id=`id -g`
2955	# & is needed as seperator, because TEMPDIR contains /
2956	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2957	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2958	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2959	mv .dvrserver.3 .dvrserver.config
2960	rm .dvrserver.1 .dvrserver.2
2961
2962	# Start dvr server in background, get his id and print on terminal
2963	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2964	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2965	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2966	local_dvrserver_running=.TRUE.
2967	else
2968	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2969	printf "\n \"$PALM_BIN\" "
2970	locat=dvr
2971	exit
2972	fi
2973
2974	fi
2975
2976	else
2977	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2978	fi
2979	fi
2980
2981
2982	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2983	# LESEN VON PALM)
2984	cat > ENVPAR << %%END%%
2985	&envpar run_identifier = '$fname', host = '$localhost',
2986	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2987	maximum_cpu_time_allowed = ${cpumax}.,
2988	revision = '$global_revision',
2989	local_dvrserver_running = $local_dvrserver_running /
2990
2991	%%END%%
2992
2993
2994	# PROGRAMMSTART
2995	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2996	PATH=$PATH:$TEMPDIR
2997
2998	# MPI debug option (argument checking, slows down execution due to increased latency)
2999	if [[ "$mpi_debug" = true ]]
3000	then
3001	export MPI_CHECK_ARGS=1
3002	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3003	fi
3004
3005	if [[ "$totalview" = true ]]
3006	then
3007	printf "\n *** totalview debugger will be used"
3008	tv_opt="-tv"
3009	else
3010	tv_opt=""
3011	fi
3012
3013	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3014	then
3015	if [[ "$ENVIRONMENT" = BATCH ]]
3016	then
3017	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3018	then
3019	printf "\n +++ debug is allowed in interactive mode only"
3020	locat=debug
3021	exit
3022	fi
3023	fi
3024	if [[ $localhost = decalpha ]]
3025	then
3026	dxladebug a.out
3027	elif [[ $localhost = ibmh ]]
3028	then
3029
3030	# SETUP THE IBM MPI ENVIRONMENT
3031	export MP_SHARED_MEMORY=yes
3032	export AIXTHREADS_SCOPE=S
3033	export OMP_NUM_THREADS=$threads_per_task
3034	export AUTHSTATE=files
3035	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3036
3037	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3038	export MP_ADAPTER_USE=shared
3039	export MP_CPU_USE=multiple
3040	export MP_TIMEOUT=1200
3041
3042	unset MP_TASK_AFFINITY
3043
3044	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3045	#(( ii = 1 ))
3046	#while (( ii <= $numprocs ))
3047	#do
3048	# echo $localhost_realname >> hostfile
3049	# (( ii = ii + 1 ))
3050	#done
3051	#export MP_HOSTFILE=hostfile
3052
3053	if [[ "$LOADLBATCH" = yes ]]
3054	then
3055	totalview poe a.out $ROPTS
3056	else
3057	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3058	export TVDSVRLAUNCHCMD=ssh
3059	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3060	fi
3061	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3062	then
3063	# CURRENTLY NO DEBUGGER ON LCSGI
3064	if [[ $run_coupled_model = true ]]
3065	then
3066	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3067	locat=debug
3068	exit
3069	else
3070	echo "no_coupling" > runfile_atmos
3071	fi
3072	(( ii = $numprocs / $threads_per_task ))
3073	export OMP_NUM_THREADS=$threads_per_task
3074	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3075	if [[ $threads_per_task != 1 ]]
3076	then
3077	printf "\n threads per task: $threads_per_task"
3078	fi
3079	printf "\n\n"
3080	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3081	then
3082	# export MPI_LAUNCH_TIMEOUT=360
3083	if [[ "$totalview" = true ]]
3084	then
3085	printf "\n running totalview debugger"
3086	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3087	else
3088	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3089	fi
3090	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3091	then
3092	# ulimit -s 300000 # A too large stack size causes problems
3093	# export MV2_NUM_PORTS=2
3094	# export MV2_CPU_MAPPING=0:1:2:3
3095	if [[ "$totalview" = true ]]
3096	then
3097	printf "\n running totalview debugger"
3098	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3099	else
3100	mpiexec ./a.out $ROPTS < runfile_atmos
3101	fi
3102	fi
3103	else
3104	printf "\n +++ no debug available on \"$localhost\" "
3105	printf "\n or not implemented in mrun so far"
3106	locat=debug
3107	exit
3108	fi
3109
3110	# end debug mode
3111	else
3112
3113	# normal execution
3114	if [[ -n $numprocs ]]
3115	then
3116	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3117	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3118	then
3119	# SETUP THE IBM MPI ENVIRONMENT
3120	if [[ $host != ibmh && $host != ibmkisti ]]
3121	then
3122	export MP_SHARED_MEMORY=yes
3123	export AIXTHREAD_SCOPE=S
3124	export OMP_NUM_THREADS=$threads_per_task
3125	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3126	export AUTHSTATE=files
3127	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3128	# export MP_PRINTENV=yes
3129
3130	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3131	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3132	export MP_WAIT_MODE=poll
3133	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3134	fi
3135
3136	if [[ $host = ibmkisti ]]
3137	then
3138	export LANG=en_US
3139	export MP_SHARED_MEMORY=yes
3140	if [[ $threads_per_task = 1 ]]
3141	then
3142	export MP_SINGLE_THREAD=yes
3143	export MEMORY_AFFINITY=MCM
3144	else
3145	export OMP_NUM_THREADS=$threads_per_task
3146	fi
3147	fi
3148
3149	if [[ "$LOADLBATCH" = yes ]]
3150	then
3151	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3152	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3153	then
3154	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3155	else
3156	if [[ $run_coupled_model = false ]]
3157	then
3158	if [[ "$ocean_file_appendix" = true ]]
3159	then
3160	echo "precursor_ocean" > runfile_atmos
3161	else
3162	echo "precursor_atmos" > runfile_atmos
3163	fi
3164	else
3165	(( iia = $numprocs_atmos / $threads_per_task ))
3166	(( iio = $numprocs_ocean / $threads_per_task ))
3167	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3168	printf "\n using $coupled_mode coupling"
3169	printf "\n\n"
3170	echo "coupled_run $iia $iio" > runfile_atmos
3171	fi
3172	poe ./a.out $ROPTS < runfile_atmos
3173	fi
3174	else
3175	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3176	then
3177	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3178	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3179	then
3180	if [[ -f $hostfile ]]
3181	then
3182	cp $hostfile hostfile
3183	else
3184	(( ii = 1 ))
3185	while (( ii <= $numprocs ))
3186	do
3187	echo $localhost_realname >> hostfile
3188	(( ii = ii + 1 ))
3189	done
3190	fi
3191	export MP_HOSTFILE=hostfile
3192	if [[ $run_coupled_model = false ]]
3193	then
3194	if [[ "$ocean_file_appendix" = true ]]
3195	then
3196	echo "precursor_ocean" > runfile_atmos
3197	else
3198	echo "precursor_atmos" > runfile_atmos
3199	fi
3200	else
3201	(( iia = $numprocs_atmos / $threads_per_task ))
3202	(( iio = $numprocs_ocean / $threads_per_task ))
3203	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3204	printf "\n using $coupled_mode coupling"
3205	printf "\n\n"
3206	echo "coupled_run $iia $iio" > runfile_atmos
3207	fi
3208	if [[ $localhost = ibmy ]]
3209	then
3210	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3211	else
3212	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3213	fi
3214
3215	else
3216	if [[ "$host_file" = "" ]]
3217	then
3218	printf "\n +++ no hostfile given in configuration file"
3219	locat=config_file
3220	exit
3221	else
3222	eval host_file=$host_file
3223	fi
3224	export MP_HOSTFILE=$host_file
3225	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3226	fi
3227	fi
3228	elif [[ $host = nech \|\| $host = necriam ]]
3229	then
3230	(( ii = nodes ))
3231	if [[ $ii = 1 ]]
3232	then
3233	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3234	export MPIPROGINF=YES
3235	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3236	echo "*** execution on single node with mpirun"
3237	mpirun -np $numprocs ./a.out $ROPTS
3238	else
3239	(( i = 0 ))
3240	while (( i < ii ))
3241	do
3242	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3243	(( i = i + 1 ))
3244	done
3245
3246	echo "#!/bin/sh" > mpi_exec_shell
3247	echo " " >> mpi_exec_shell
3248	echo "set -u" >> mpi_exec_shell
3249	echo "F_ERRCNT=0" >> mpi_exec_shell
3250	echo "MPIPROGINV=YES" >> mpi_exec_shell
3251	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3252	echo "cpurest=$cpurest" >> mpi_exec_shell
3253	echo "fname=$fname" >> mpi_exec_shell
3254	echo "localhost=$localhost" >> mpi_exec_shell
3255	echo "return_addres=$return_addres" >> mpi_exec_shell
3256	echo "return_username=$return_username" >> mpi_exec_shell
3257	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3258	echo "write_binary=$write_binary" >> mpi_exec_shell
3259	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3260	echo " " >> mpi_exec_shell
3261	echo "export F_ERRCNT" >> mpi_exec_shell
3262	echo "export MPIPROGINV" >> mpi_exec_shell
3263	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3264	echo "export cpurest" >> mpi_exec_shell
3265	echo "export fname" >> mpi_exec_shell
3266	echo "export localhost" >> mpi_exec_shell
3267	echo "export return_addres" >> mpi_exec_shell
3268	echo "export return_username" >> mpi_exec_shell
3269	echo "export tasks_per_node" >> mpi_exec_shell
3270	echo "export write_binary" >> mpi_exec_shell
3271	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3272	echo " " >> mpi_exec_shell
3273	echo "exec ./a.out" >> mpi_exec_shell
3274
3275	chmod u+x mpi_exec_shell
3276	export MPIPROGINF=YES
3277	mpirun -f multinode_config &
3278	wait
3279
3280	fi
3281	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3282	then
3283
3284	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3285	# DOES NOT EXIST
3286	if [[ $host != lcsgih && $host != lcsgib ]]
3287	then
3288	if [[ -f $hostfile ]]
3289	then
3290	cp $hostfile hostfile
3291	else
3292	(( ii = 1 ))
3293	while (( ii <= $numprocs / $threads_per_task ))
3294	do
3295	echo $localhost_realname >> hostfile
3296	(( ii = ii + 1 ))
3297	done
3298	fi
3299	eval zeile=\"`head -n $ii hostfile`\"
3300	printf "\n *** running on: $zeile"
3301	fi
3302
3303	(( ii = $numprocs / $threads_per_task ))
3304	export OMP_NUM_THREADS=$threads_per_task
3305	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3306	if [[ $threads_per_task != 1 ]]
3307	then
3308	# increase stack size to unlimited, because large runs
3309	# may abort otherwise
3310	ulimit -Ss unlimited
3311	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3312	fi
3313	if [[ $run_coupled_model = false ]]
3314	then
3315	if [[ "$ocean_file_appendix" = true ]]
3316	then
3317	echo "precursor_ocean" > runfile_atmos
3318	else
3319	echo "precursor_atmos" > runfile_atmos
3320	fi
3321	printf "\n\n"
3322	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3323	then
3324	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3325	then
3326	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3327	# export MPI_DSM_DISTRIBUTE=1
3328	# MPI_DSM_CPULIST: pin MPI processes to cores
3329	if [[ $use_openmp = false ]]
3330	then
3331	if [[ "$sgi_feature" = ice2 ]]
3332	then
3333	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3334	else
3335	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3336	fi
3337	else
3338	unset MPI_DSM_CPULIST
3339	fi
3340	# MPI_IB_RAILS: use both IB rails on ICE2
3341	export MPI_BUFS_PER_HOST=512
3342	export MPI_IB_RAILS=2
3343	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3344	export MPI_CONNECTIONS_THRESHOLD=8192
3345	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3346	export MPI_TYPE_DEPTH=20
3347	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3348	export MPI_GROUP_MAX=64
3349	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3350	if [[ $use_openmp = true ]]
3351	then
3352	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3353	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3354	else
3355	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3356	fi
3357
3358	# next is test for openmp usage
3359	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3360	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3361	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3362	then
3363	export MV2_NUM_PORTS=2
3364	# The default setting of MV2_CPU_MAPPING gives best results
3365	# export MV2_ENABLE_AFFINITY=1
3366	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3367	# if [[ "$sgi_feature" = ice2 ]]
3368	# then
3369	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3370	# else
3371	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3372	# fi
3373	if [[ $use_openmp = true ]]
3374	then
3375	unset MV2_CPU_MAPPING
3376	export MV2_ENABLE_AFFINITY=0
3377	fi
3378	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3379	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3380	if [[ $use_openmp = true ]]
3381	then
3382	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3383	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3384	else
3385	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3386	fi
3387	elif [[ "$mpilib" = impi ]]
3388	then
3389	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3390	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3391	fi
3392	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3393	then
3394	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3395	else
3396	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3397	fi
3398	else
3399
3400	# currently there is no full MPI-2 support on ICE and XT4
3401	(( iia = $numprocs_atmos / $threads_per_task ))
3402	(( iio = $numprocs_ocean / $threads_per_task ))
3403	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3404	printf "\n using $coupled_mode coupling"
3405	printf "\n\n"
3406
3407	if [[ $coupled_mode = "mpi2" ]]
3408	then
3409	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3410	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3411	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3412	then
3413
3414	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3415	then
3416	# export MPI_LAUNCH_TIMEOUT=360
3417	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3418	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3419	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3420	then
3421	# ulimit -s 300000 # A too large stack size causes problems
3422	# export MV2_NUM_PORTS=2
3423	# export MV2_CPU_MAPPING=0:1:2:3
3424	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3425	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3426	fi
3427
3428	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3429	then
3430
3431	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3432	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3433
3434	else
3435	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3436	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3437	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3438	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3439	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3440	fi
3441	wait
3442
3443	else
3444
3445	echo "coupled_run $iia $iio" > runfile_atmos
3446	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3447	then
3448
3449	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3450	then
3451	# export MPI_LAUNCH_TIMEOUT=360
3452	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3453	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3454	then
3455	# ulimit -s 300000 # A too large stack size causes problems
3456	# export MV2_NUM_PORTS=2
3457	# export MV2_CPU_MAPPING=0:1:2:3
3458	mpiexec ./a.out $ROPTS < runfile_atmos
3459	fi
3460
3461	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3462	then
3463
3464	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3465
3466	elif [[ $host = lck \|\| $host = lckordi ]]
3467	then
3468	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3469	fi
3470	wait
3471	fi
3472
3473	fi
3474	elif [[ $host = decalpha ]]
3475	then
3476	dmpirun -np $numprocs a.out $ROPTS
3477	elif [[ $host = lckyoto ]]
3478	then
3479	set -xv
3480	export P4_RSHCOMMAND=plesh
3481	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3482	if [[ "$ENVIRONMENT" = BATCH ]]
3483	then
3484	if [[ "$cond2" = fujitsu ]]
3485	then
3486	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3487	elif [[ "cond2" = pgi ]]
3488	then
3489	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3490	else
3491	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3492	fi
3493	else
3494	if [[ "$cond2" = "" ]]
3495	then
3496	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3497	else
3498	mpirun -np $numprocs ./a.out $ROPTS
3499	fi
3500	fi
3501	set +xv
3502	elif [[ $host = lctit ]]
3503	then
3504	export OMP_NUM_THREADS=$threads_per_task
3505	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3506	if [[ "$threads_per_task" != 1 ]]
3507	then
3508	export MV2_ENABLE_AFFINITY=0
3509	fi
3510	echo "----- PBS_NODEFILE content:"
3511	cat $PBS_NODEFILE
3512	echo "-----"
3513	(( ii = $numprocs / $threads_per_task ))
3514	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3515	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3516	else
3517	mpprun -n $numprocs a.out $ROPTS
3518	fi
3519	[[ $? != 0 ]] && execution_error=true
3520
3521
3522	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3523	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3524	then
3525	apprentice
3526	fi
3527	else
3528	a.out $ROPTS
3529	fi
3530	fi
3531	if [[ $? != 0 \|\| $execution_error = true ]]
3532	then
3533
3534	# ABBRUCH BEI LAUFZEITFEHLER
3535	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3536	printf "\n +++ runtime error occured"
3537	locat=execution
3538	exit
3539	else
3540	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3541	printf "\n$striche\n *** execution finished \n"
3542
3543	# Stop the dvr streaming server and process the dvr output in order
3544	# to create dvrs- and html-files containing all streams
3545	if [[ "$dvrserver_id" != "" ]]
3546	then
3547	kill $dvrserver_id
3548	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3549
3550	# If there is a directory, data have been output by the
3551	# streaming server. Otherwise, user has chosen dvrp_output=local
3552	if [[ -d DATA_DVR ]]
3553	then
3554
3555	# Add the current dvr configuration file to the dvr output
3556	# directory
3557	cp .dvrserver.config DATA_DVR
3558
3559	# Process the dvr output (option -s for also generating
3560	# sequence mode data)
3561	process_dvr_output -d DATA_DVR -f $fname -s
3562
3563	else
3564
3565	# Process the local output
3566	process_dvr_output -l -d DATA_DVR -f $fname
3567
3568	fi
3569
3570	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3571	then
3572
3573	# Process dvr output generated in local mode (dvrp_output=local)
3574	process_dvr_output -l -d DATA_DVR -f $fname
3575
3576	fi
3577	fi
3578
3579
3580
3581	# Call of combine_plot_fields in order to merge single files written
3582	# by each PE into one file.
3583	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3584	then
3585	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3586	printf "\n 2d- and/or 3d-data may be incomplete!"
3587	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3588	else
3589	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3590	combine_plot_fields${block}.x
3591	fi
3592
3593
3594
3595	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3596	(( i = 0 ))
3597	while (( i < ioc ))
3598	do
3599	(( i = i + 1 ))
3600	if (( i == 1 ))
3601	then
3602	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3603	fi
3604	printf "\n >>> ${out_command[$i]}"
3605	eval ${out_command[$i]}
3606	if (( i == ioc ))
3607	then
3608	printf "\n$striche\n"
3609	fi
3610	done
3611
3612
3613	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3614	if [[ $do_trace = true ]]
3615	then
3616	printf "\n\n"
3617	ls -al
3618	fi
3619
3620
3621
3622	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3623	(( i = 0 ))
3624	while (( i < iout ))
3625	do
3626	(( i = i + 1 ))
3627	if (( i == 1 ))
3628	then
3629	printf "\n\n *** saving OUTPUT-files:\n$striche"
3630	fi
3631
3632	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3633	files_for_pes=false; filetyp=file
3634	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3635	then
3636	files_for_pes=true; filetyp=directory
3637	actionout[$i]=""
3638	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3639	then
3640	actionout[$i]=""
3641	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3642	then
3643	files_for_pes=true; filetyp=directory
3644	actionout[$i]="ar"
3645	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3646	then
3647	actionout[$i]="ar"
3648	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3649	then
3650	files_for_pes=true; filetyp=directory
3651	actionout[$i]="fl"
3652	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3653	then
3654	actionout[$i]="fl"
3655	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3656	then
3657	files_for_pes=true; filetyp=directory
3658	actionout[$i]="tr"
3659	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3660	then
3661	actionout[$i]="tr"
3662	fi
3663
3664	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3665	then
3666	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3667	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3668	then
3669	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3670	else
3671
3672
3673	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3674	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3675	# REMOTE-RECHNUNGEN
3676	if [[ "${actionout[$i]}" = tr ]]
3677	then
3678	if [[ $localhost != $fromhost ]]
3679	then
3680	if [[ $files_for_pes = false ]]
3681	then
3682	cps=""
3683	cst=""
3684	else
3685	cps=-c
3686	cst="/"
3687	fi
3688	if [[ $localhost = nech ]]
3689	then
3690
3691	# TRANSFER IN EIGENSTAENDIGEM JOB
3692	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3693	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3694	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3695	if [[ $files_for_pes = false ]]
3696	then
3697	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3698	else
3699	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3700	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3701	fi
3702
3703	echo "set -x" > transfer_${localout[$i]}
3704	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3705
3706	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3707	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3708	printf "\n or higher cycle\n"
3709	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3710
3711	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3712
3713	if [[ $localhost = nech ]]
3714	then
3715	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3716	else
3717	if [[ "$LOGNAME" = b323013 ]]
3718	then
3719	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3720	else
3721	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3722	fi
3723	fi
3724
3725	else
3726
3727	# TRANSFER INNERHALB DIESES JOBS
3728	transfer_failed=false
3729	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3730	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3731	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3732	[[ $? != 0 ]] && transfer_failed=true
3733
3734	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3735	# LOKALER MASCHINE ANLEGEN
3736	if [[ $transfer_failed = true ]]
3737	then
3738	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3739	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3740
3741	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3742	# ANLEGEN.
3743	eval local_catalog=${pathout[$i]}
3744	if [[ ! -d $local_catalog ]]
3745	then
3746	printf " *** local directory does not exist. Trying to create:\n"
3747	printf " $local_catalog \n"
3748	mkdir -p $local_catalog
3749	fi
3750	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3751	transfer_problems=true
3752	fi
3753	fi
3754	else
3755
3756	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3757	actionout[$i]=""
3758	fi
3759	fi
3760
3761
3762	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3763	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3764	# REMOTE-RECHNUNGEN
3765	if [[ "${actionout[$i]}" = tra ]]
3766	then
3767	if [[ $localhost != $fromhost ]]
3768	then
3769	if [[ $localhost = ibmh \|\| $localhost = nech ]]
3770	then
3771
3772	# TRANSFER IN EIGENSTAENDIGEM JOB
3773	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3774	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3775	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3776	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3777
3778	echo "set -x" > transfer_${localout[$i]}
3779	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3780
3781	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3782	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3783	printf "\n or higher cycle\n"
3784	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3785
3786	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3787
3788	if [[ $localhost = nech ]]
3789	then
3790	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3791	else
3792	if [[ $LOGNAME = b323013 ]]
3793	then
3794	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3795	else
3796	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3797	fi
3798	fi
3799
3800	else
3801
3802	# TRANSFER INNERHALB DIESES JOBS
3803	transfer_failed=false
3804	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3805	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3806	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3807	[[ $? != 0 ]] && transfer_failed=true
3808
3809	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3810	# LOKALER MASCHINE ANLEGEN
3811	if [[ $transfer_failed = true ]]
3812	then
3813	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3814	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3815
3816	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3817	# ANLEGEN
3818	eval local_catalog=${pathout[$i]}
3819	if [[ ! -d $local_catalog ]]
3820	then
3821	printf " *** local directory does not exist. Trying to create:\n"
3822	printf " $local_catalog \n"
3823	mkdir -p $local_catalog
3824	fi
3825
3826	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3827	transfer_problems=true
3828	fi
3829	fi
3830	else
3831
3832	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3833	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3834	actionout[$i]=a
3835	fi
3836	fi
3837
3838
3839	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3840	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3841	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3842	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3843	if [[ "${actionout[$i]}" = fl ]]
3844	then
3845	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3846	chmod g+rx $tmp_data_catalog
3847	if [[ $files_for_pes = false ]]
3848	then
3849	printf "\n >>> OUTPUT: ${localout[$i]} to"
3850	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3851	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3852	else
3853	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3854	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3855	mkdir $tmp_data_catalog/${frelout[$i]}
3856	cd ${localout[$i]}
3857	for file in $(ls *)
3858	do
3859	ln -f $file $tmp_data_catalog/${frelout[$i]}
3860	done
3861	cd $TEMPDIR
3862	fi
3863
3864
3865	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3866	if [[ $store_on_archive_system = true ]]
3867	then
3868
3869	if [[ $archive_system = asterix ]]
3870	then
3871	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3872	if [[ $files_for_pes = false ]]
3873	then
3874	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3875	else
3876	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3877	fi
3878	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3879	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3880	echo "then" >> archive_${frelout[$i]}
3881	echo " do_stageout=false" >> archive_${frelout[$i]}
3882	echo "else" >> archive_${frelout[$i]}
3883	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3884	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3885	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3886	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3887	if [[ $files_for_pes = false ]]
3888	then
3889	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3890	else
3891	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3892	fi
3893	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3894	echo "fi" >> archive_${frelout[$i]}
3895	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3896	elif [[ $archive_system = DMF ]]
3897	then
3898	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3899	if [[ $files_for_pes = false ]]
3900	then
3901	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3902	locat=DMF
3903	exit
3904	else
3905	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3906	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3907	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3908	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3909	fi
3910	elif [[ $archive_system = tivoli ]]
3911	then
3912	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3913	if [[ $files_for_pes = false ]]
3914	then
3915	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3916	echo "set -x" >> archive_${frelout[$i]}
3917	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3918	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3919	else
3920
3921	echo "set -x" >> archive_${frelout[$i]}
3922	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3923	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3924	cd $tmp_data_catalog
3925	all_files=`ls -1 ${frelout[$i]}/*`
3926	cd - > /dev/null
3927	(( inode = 0 ))
3928	(( tp1 = tasks_per_node + 1 ))
3929	while (( inode < nodes ))
3930	do
3931	# echo "*** all_files = \"$all_files\" "
3932	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3933	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3934	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3935	# echo "*** files = \"$files\" "
3936	# echo "*** all_files = \"$all_files\" "
3937	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3938	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3939	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3940	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3941	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3942	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3943	(( inode = inode + 1 ))
3944	done
3945	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3946	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3947	fi
3948	elif [[ $archive_system = ut ]]
3949	then
3950	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3951	if [[ $files_for_pes = false ]]
3952	then
3953	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3954	echo "set -x" >> archive_${frelout[$i]}
3955	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3956	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3957	else
3958
3959	echo "set -x" >> archive_${frelout[$i]}
3960	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3961	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3962	cd $tmp_data_catalog
3963	all_files=`ls -1 ${frelout[$i]}/*`
3964	cd - > /dev/null
3965	(( inode = 0 ))
3966	(( tp1 = tasks_per_node + 1 ))
3967	while (( inode < nodes ))
3968	do
3969	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3970	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3971	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3972	(( inode = inode + 1 ))
3973	done
3974	fi
3975	elif [[ $archive_system = none ]]
3976	then
3977	printf " +++ archiving on $localhost not available!\n"
3978	fi
3979
3980	if [[ $archive_system != none ]]
3981	then
3982	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3983	then
3984	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3985	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
3986	elif [[ $localhost = nech ]]
3987	then
3988	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3989	fi
3990	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3991	fi
3992	else
3993	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
3994	fi
3995
3996
3997	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3998	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3999	if [[ $files_for_pes = false ]]
4000	then
4001	cat /dev/null > ${pathout[$i]}
4002	else
4003	mkdir -p ${pathout[$i]}
4004	fi
4005
4006	fi
4007
4008
4009	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4010	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4011	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4012	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4013	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4014	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4015	if [[ "${actionout[$i]}" = ar ]]
4016	then
4017	if [[ $files_for_pes = false ]]
4018	then
4019	printf "\n >>> OUTPUT: ${localout[$i]} to"
4020	printf "\n ${pathout[$i]}"
4021	printf "\n File will be copied to archive-system ($archive_system) !\n"
4022	else
4023	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4024	printf "\n ${pathout[$i]}"
4025	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4026	fi
4027	mv ${localout[$i]} ${frelout[$i]}
4028
4029	file_saved=false
4030
4031	if [[ $archive_system = asterix ]]
4032	then
4033	do_stageout=true
4034	(( stageout_anz = 0 ))
4035	while [[ $do_stageout = true ]]
4036	do
4037	if [[ $files_for_pes = false ]]
4038	then
4039	stageout ${frelout[$i]} > STAGE_OUTPUT
4040	else
4041	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4042	fi
4043	cat STAGE_OUTPUT
4044	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4045	then
4046	file_saved=true
4047	do_stageout=false
4048	else
4049	if [[ $files_for_pes = false ]]
4050	then
4051	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4052	else
4053	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4054	fi
4055	(( stageout_anz = stageout_anz + 1 ))
4056	if (( stageout_anz == 10 ))
4057	then
4058	printf "\n +++ stoped after 10 unsuccessful tries!"
4059	archive_save=false
4060	do_stageout=false
4061	else
4062	printf "\n *** new try to store on archive after 15 min:"
4063	sleep 900
4064	fi
4065	fi
4066	done
4067	elif [[ $archive_system = DMF ]]
4068	then
4069	if [[ $files_for_pes = false ]]
4070	then
4071	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4072	locat=DMF
4073	exit
4074	else
4075	rm -rf $ARCHIVE/${frelout[$i]}
4076	cp -r ${frelout[$i]} $ARCHIVE
4077	fi
4078	file_saved=true
4079	elif [[ $archive_system = tivoli ]]
4080	then
4081	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4082	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4083	# GELEGT WERDEN
4084	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4085	chmod g+rx $tmp_data_catalog
4086	if [[ $files_for_pes = false ]]
4087	then
4088	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4089	else
4090	mkdir $tmp_data_catalog/${frelout[$i]}
4091	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4092	fi
4093
4094	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4095	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4096	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4097	if [[ $files_for_pes = false ]]
4098	then
4099	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4100	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4101	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4102	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4103	else
4104	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4105	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4106	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4107	fi
4108
4109	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4110	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4111	file_saved=true
4112
4113	elif [[ $archive_system = ut ]]
4114	then
4115	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4116	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4117	# GELEGT WERDEN
4118	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4119	chmod g+rx $tmp_data_catalog
4120	if [[ $files_for_pes = false ]]
4121	then
4122	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4123	else
4124	mkdir $tmp_data_catalog/${frelout[$i]}
4125	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4126	fi
4127
4128	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4129	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4130	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4131	if [[ $files_for_pes = false ]]
4132	then
4133	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4134	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4135	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4136	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4137	else
4138	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4139	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4140	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4141	fi
4142
4143	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4144	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4145	file_saved=true
4146
4147	else
4148	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4149	archive_save=false
4150	fi
4151	if [[ $file_saved = true ]]
4152	then
4153	if [[ $files_for_pes = false ]]
4154	then
4155	cat /dev/null > ${pathout[$i]}
4156	else
4157	mkdir -p ${pathout[$i]}
4158	fi
4159	fi
4160	fi
4161
4162	# APPEND AUF LOKALER MASCHINE
4163	if [[ "${actionout[$i]}" = "a" ]]
4164	then
4165	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4166	then
4167	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4168	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4169	else
4170	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4171	cat ${localout[$i]} >> ${pathout[$i]}
4172	fi
4173	fi
4174
4175	# KOPIEREN AUF LOKALER MASCHINE
4176	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4177	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4178	then
4179
4180	# KOPIEREN AUF EINPROZESSORMASCHINE
4181	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4182	then
4183	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4184	if [[ $link_local_output = true ]]
4185	then
4186	printf " using ln -f\n"
4187	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4188	fi
4189	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4190	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4191	then
4192	if [[ $link_local_output = true ]]
4193	then
4194	printf " ln failed, using cp...\n"
4195	fi
4196	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4197	fi
4198	else
4199	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4200	if [[ $link_local_output = true ]]
4201	then
4202	printf " using ln -f\n"
4203	ln -f ${localout[$i]} ${pathout[$i]}
4204	fi
4205	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4206	if [[ ! -f "${pathout[$i]}" ]]
4207	then
4208	if [[ $link_local_output = true ]]
4209	then
4210	printf " ln failed, using cp...\n"
4211	fi
4212	cp ${localout[$i]} ${pathout[$i]}
4213	fi
4214	fi
4215
4216	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4217	then
4218
4219	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4220	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4221	# WIRD DANN KOPIERT
4222	# PER MOVE UMBENANNT WERDEN
4223	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4224	if [[ $link_local_output = true ]]
4225	then
4226	printf " using ln -f\n"
4227	mkdir ${pathout[$i]}
4228	cd ${localout[$i]}
4229	for file in $(ls *)
4230	do
4231	ln -f $file ${pathout[$i]}
4232	done
4233	cd $TEMPDIR
4234	fi
4235	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4236	if [[ ! -f "${pathout[$i]}/_0000" ]]
4237	then
4238	if [[ $link_local_output = true ]]
4239	then
4240	printf " ln failed for .../_0000, using cp...\n"
4241	fi
4242	cp -r ${localout[$i]} ${pathout[$i]}
4243	fi
4244
4245	fi
4246	fi
4247	done
4248	if (( i != 0 ))
4249	then
4250	if [[ $transfer_problems = true ]]
4251	then
4252	printf "\n$striche\n *** OUTPUT-files saved"
4253	printf "\n +++ WARNING: some data transfers failed! \n"
4254	else
4255	printf "\n$striche\n *** all OUTPUT-files saved \n"
4256	fi
4257	fi
4258
4259
4260	# EVENTUELL FOLGEJOB STARTEN
4261	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4262	if [[ -f CONTINUE_RUN ]]
4263	then
4264
4265	if [[ $archive_save = true ]]
4266	then
4267
4268	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4269	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4270	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4271	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4272	# HANDEN
4273	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4274	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4275	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4276	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4277	then
4278	mc=`echo $mc \| sed 's/#/f/g'`
4279	fi
4280
4281
4282	# JOB STARTEN
4283	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4284	echo " $mc"
4285	printf "\n$striche\n"
4286	if [[ $localhost != $fromhost ]]
4287	then
4288
4289	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4290	then
4291	echo "*** ssh will be used to initiate restart-runs!"
4292	echo " return_addres=\"$return_addres\" "
4293	echo " return_username=\"$return_username\" "
4294	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4295	then
4296	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4297	else
4298	if [[ $localhost = ibmkisti ]]
4299	then
4300	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4301	else
4302	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4303	fi
4304	fi
4305	else
4306	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4307	locat=restart; exit
4308	fi
4309
4310	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4311	# DER AKTUELLE JOB ENDET
4312	if [[ $queue = special1q ]]
4313	then
4314	sleep 120
4315	else
4316	sleep 30
4317	fi
4318
4319	else
4320
4321	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4322	# RUFEN WERDEN, AUSSER AUF lcfimm
4323	cd $LOCAL_PWD
4324	if [[ $localhost = lcfimm ]]
4325	then
4326	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4327	else
4328	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4329	fi
4330	cd - > /dev/null
4331	fi
4332	printf "\n$striche\n *** restart-run initiated \n"
4333
4334
4335	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4336	# GEHOLT WORDEN SIND, LOESCHEN
4337	(( i = 0 ))
4338	while (( i < iin ))
4339	do
4340	(( i = i + 1 ))
4341	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4342	then
4343	rm -r $tmp_data_catalog/${frelin[$i]}
4344	fi
4345	done
4346
4347	else
4348
4349	printf "\n +++ no restart-run possible, since errors occured"
4350	printf "\n during the archive process"
4351	fi
4352
4353	fi
4354
4355
4356
4357	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4358	if [[ "$email_notification" != "none" ]]
4359	then
4360
4361	if [[ $localhost != $fromhost ]]
4362	then
4363	if [[ -f CONTINUE_RUN ]]
4364	then
4365	echo "PALM restart run necessary" > email_text
4366	echo "description header of actual run:" >> email_text
4367	cat CONTINUE_RUN >> email_text
4368	echo "mrun-command to restart:" >> email_text
4369	echo "$mc" >> email_text
4370	else
4371	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4372	fi
4373	mail $email_notification < email_text
4374	printf "\n *** email notification sent to \"$email_notification\" "
4375	fi
4376	fi
4377
4378
4379
4380	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4381	cd $HOME
4382	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4383
4384	else
4385
4386
4387	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4388	# CHENDE AKTIONEN DURCHGEFUEHRT
4389
4390	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4391	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q \$queue -R $return_addres -U $return_username -u $remote_username"
4392	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4393	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4394	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4395	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4396	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4397	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4398	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4399	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4400	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4401	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4402	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4403	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4404	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4405	if [[ $use_openmp = true ]]
4406	then
4407	mrun_com=${mrun_com}" -O $threads_per_task"
4408	fi
4409	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4410	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4411	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4412	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4413	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4414	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4415	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4416	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4417	if [[ $do_remote = true ]]
4418	then
4419	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4420	fi
4421
4422
4423	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4424	jobfile=jobfile.$RANDOM
4425
4426
4427	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4428	echo "mkdir $TEMPDIR" >> $jobfile
4429	echo "cd $TEMPDIR" >> $jobfile
4430
4431
4432	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4433	if [[ $do_trace = true ]]
4434	then
4435	echo "set -x" >> $jobfile
4436	else
4437	echo "set +vx" >> $jobfile
4438	fi
4439
4440
4441	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4442	# DATEI FUER DEN JOB
4443	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4444	then
4445
4446	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4447	# KOPIEREN
4448	if [[ $restart_run != true ]]
4449	then
4450	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4451	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4452	fi
4453
4454	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4455	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4456	echo "set -x" >> $jobfile
4457	if [[ $host = $localhost ]]
4458	then
4459	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4460	else
4461	if [[ $host != ibmkisti ]]
4462	then
4463	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4464	else
4465	# on KISTI's IBM firewall is only opened on interactive node
4466	echo "localdir=\`pwd\`" >> $jobfile
4467	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4468	fi
4469	fi
4470	echo "export SOURCES_COMPLETE=true" >> $jobfile
4471
4472	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4473	# ARBEITSVERZEICHNIS VERSCHIEBEN
4474	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4475	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4476	echo "execute_mrun=true" >> $jobfile
4477	echo " " >> $jobfile
4478
4479	else
4480
4481	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4482	# SOWIE GEGEBENENFALLS DES MAKEFILES
4483	if [[ $do_compile = true ]]
4484	then
4485
4486	source_catalog=SOURCES_FOR_RUN_$fname
4487
4488	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4489	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4490	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4491	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4492	echo "export SOURCES_COMPLETE=true" >> $jobfile
4493	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4494
4495	for filename in $source_list
4496	do
4497	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4498	echo "cat > $filename << \"%END%\"" >> $jobfile
4499	cat $source_catalog/$filename >> $jobfile
4500	echo " " >> $jobfile
4501	echo "%END%" >> $jobfile
4502	echo " " >> $jobfile
4503	done
4504
4505	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4506	echo "cat > Makefile << \"%END%\"" >> $jobfile
4507	cat $source_catalog/Makefile >> $jobfile
4508	echo " " >> $jobfile
4509	echo "%END%" >> $jobfile
4510	echo " " >> $jobfile
4511
4512	echo "cd - > /dev/null" >> $jobfile
4513
4514	fi
4515
4516
4517	# ABSPEICHERN DER KONFIGURATIONSDATEI
4518	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4519	echo "cat > $config_file << \"%END%\"" >> $jobfile
4520	cat $config_file >> $jobfile
4521	echo "%END%" >> $jobfile
4522	echo " " >> $jobfile
4523
4524
4525	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4526	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4527	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4528	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4529	echo "%END%" >> $jobfile
4530	echo "chmod u+x $mrun_script_name" >> $jobfile
4531	echo "execute_mrun=true" >> $jobfile
4532	echo " " >> $jobfile
4533
4534	fi
4535
4536
4537	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4538	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4539	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4540	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4541	if [[ $do_remote = true ]]
4542	then
4543	(( i = 0 ))
4544	while (( i < iin ))
4545	do
4546	(( i = i + 1 ))
4547	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4548	if [[ "${transin[$i]}" = job ]]
4549	then
4550	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4551	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4552	echo " " >> $jobfile
4553	echo "%END%" >> $jobfile
4554	else
4555	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4556	fi
4557
4558	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4559	echo "if [[ \$? = 1 ]]" >> $jobfile
4560	echo "then" >> $jobfile
4561	echo " echo \" \" " >> $jobfile
4562	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4563	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4564	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4565	echo " execute_mrun=false" >> $jobfile
4566	echo "fi" >> $jobfile
4567	done
4568	fi
4569
4570	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4571	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4572	echo "LOCAL_PWD=$working_directory" >> $jobfile
4573	echo "export LOCAL_PWD" >> $jobfile
4574
4575	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4576	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4577	echo "export LOCAL_MRUN_PATH" >> $jobfile
4578
4579	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4580	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4581	then
4582	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4583	fi
4584
4585	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4586	echo "set -x" >> $jobfile
4587	echo "queue=$queue" >> $jobfile
4588	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4589
4590	echo 'ls -al; echo `pwd`' >> $jobfile
4591	echo "cd \$HOME" >> $jobfile
4592	echo "rm -rf $TEMPDIR" >> $jobfile
4593
4594
4595
4596
4597	# JOB PER SUBJOB STARTEN
4598	if [[ $silent = false ]]
4599	then
4600	printf "\n "
4601	else
4602	printf "\n\n"
4603	fi
4604
4605	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4606	rm -rf $jobfile
4607
4608
4609	fi # ENDE REMOTE-TEIL
4610
4611
4612
4613	# ENDE DER PROZEDUR

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