Home

Context Navigation

source: palm/trunk/SCRIPTS/mrun @ 369

Last change on this file since 369 was 369, checked in by raasch, 15 years ago
additional environment variable for mpt on ice2
Property svn:keywords set to `Id Rev`
File size: 165.8 KB

Rev	Line
[71]	1	#!/bin/ksh
[66]	2	# mrun - Plot-Shellskript
[169]	3	# $Id: mrun 369 2009-08-26 06:42:46Z raasch $
[1]	4
	5	# Prozedur zum Starten von Modellaeufen
	6
	7	# letzte Aenderung:
	8	# 03/03/94 - Siggi - Entwicklungsbeginn
	9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
	10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
	11	# zelne Variable exportiert. Dies ist noetig, weil an-
	12	# sonsten irgendein Speicher ueberlaeuft und von mrun
	13	# aufgerufene Programme (z.B. stageout) mit Fehlern
	14	# abbrechen (too many arguments)
	15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
	16	# defaultmaessig im RRZN-Profile eingeschaltet
	17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
	18	# wegfallen
	19	# 25/04/00 - Siggi - Version 1.5
	20	# remote_addres und remote_user in return_addres bzw.
	21	# return_username umbenannt, return_username wird dem
	22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
	23	# Neue Variable remote_username, die beim interaktiven
	24	# mrun-Aufruf zwingend ueber die neue Option -u oder
	25	# in der Konfigurationsdatei angegeben werden muss.
	26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
	27	# Version 1.7
	28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
	29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
	30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
	31	# zu bestimmen; Praeprozessoroptionen haben nun alle
	32	# die Form -Dtext=text, weil auf IBM sonst text durch
	33	# die leere Zeichenkette ersetzt wird
	34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
	35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
	36	# (-D$OMP=OMP) in order to avoid problems with
	37	# OMP_NUM_THREADS
	38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
	39	# tar files, one for each node used
	40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
	41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
	42	# 17/01/05 - Siggi - job for data transfer to local machine now within
	43	# job class c1 (HLRN)
	44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
	45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
	46	# base filename and cycle number
	47	# 16/02/05 - Gerald - hababai validated
	48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
	49	# 29/03/05 - Marcus - berni*-en0 validated
	50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
	51	# 24/04/05 - Siggi - netcdf support on lcmuk
	52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
	53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
	54	# number) can now be used within interactive runs
	55	# 12/05/05 - Siggi - netcdf support on ibm
	56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
	57	# 18/05/05 - Siggi - netcdf support on nec
	58	# 24/05/05 - Siggi - netcdf support on ibms
	59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
	60	# to 30 seconds
	61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
	62	# PATH is temporarily set)
	63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
	64	# caused warnings in the job protocol
	65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
	66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
	67	# removed
	68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
	69	# realized by file attribute trpe
	70	# 28/10/05 - Siggi - if existing, the file extension is output in case
	71	# of missing input file - no job abort in case of
	72	# missing input files with file extensions
	73	# (preliminary solution)
	74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
	75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
	76	# 07/12/05 - Siggi - gallego and elephanta admitted
	77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
	78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
	79	# 20/01/06 - Siggi - cpp directive for ibmy
	80	# 09/02/06 - Siggi - ibmy admitted for batch mode
	81	# 13/04/06 - Siggi - ostria admitted
	82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
	83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
	84	# optimization of OpenMP runs (option stacksize is
	85	# necessary for large gridpoint numbers because
	86	# otherwise a segmentation fault occurs)
	87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
	88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
	89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
	90	# 20/09/06 - Marcus - add DVRP library on nech
	91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
	92	# on local NAMELIST file ENVPAR
	93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
	94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
	95	# 06/02/07 - Siggi - add DVRP library on lcmuk
	96	# 07/02/07 - Siggi - revision of source code handling, source code is
	97	# now expected in directory given by source_path and
	98	# not in the current working directory, source code
	99	# files provided in add_source_path are allways
	100	# compiled, source code to be compiled is allways
	101	# sampled in SOURCES_FOR_RUN_$fname which is a
	102	# subdirectory of the current working directory,
[5]	103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
[1]	104	# adapted for RIAM (neck)
[5]	105	# bugfix for cycle number of output file (extout)
	106	# all hpmuk-related code removed
[14]	107	# 14/02/07 - Siggi - dvrp support for neck added
[21]	108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
[26]	109	# mrun_path replaced by PALM_BIN,
	110	# all machines are calling interpret_config.x
[66]	111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
	112	# output
[69]	113	# 16/03/07 - Siggi - adjustments for lctit
[78]	114	# 29/03/07 - Siggi - global revision transfered to batch job by new
	115	# option -G
[82]	116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
	117	# + netcdf/dvrp-options are read from configuration
	118	# file, host identifier (local_host) is read from
	119	# config file, code related to ftp filetransfer
	120	# removed (incl. option -f)
[97]	121	# 19/06/07 - Siggi - time limit for cdata jobs increased
[102]	122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
	123	# if new option -Y (coupling) is given,
	124	# output of executables to aout_output removed,
	125	# messages are immediately written to stdout instead
[108]	126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
	127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
	128	# variables out to the nodes in coupled mode -disabled-
	129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
[109]	130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
	131	# environment variables out to the nodes in coupled mode
[118]	132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
	133	# suggestions
[122]	134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
	135	# argument -g group_number, admit all sla* node_usage
	136	# queues
[129]	137	# 30/10/07 - Marcus - further adjustments for queues on lctit
[149]	138	# 14/02/08 - Bjoern - link of restart files with long file name possible
	139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
	140	# true, mrun tries "ln -f" on local output and resorts
	141	# to "cp" or "cp -r" on error
[164]	142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
	143	# which allows the user to choose his own job catalog
	144	# by setting job_catalog in the configuration file
	145	# (default is ~/job_queue),
[172]	146	# workaround for mpiexec with -env option,
[164]	147	# adjustments for lcxt4 (Bergen Center for Computational
	148	# Science)
[183]	149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
	150	# true, mrun tries "ln -f" on local input and resorts
	151	# to "cp" or "cp -r" on error
[180]	152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
[179]	153	# 14/07/08 - Siggi - adjustments for lcsgih
[188]	154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
[204]	155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
[210]	156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
	157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
	158	# argument
[211]	159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
	160	# file
	161	# 11/11/08 - Siggi - rules for using user code files changed: user
	162	# code splitted into one file per subroutine,
	163	# user can provide his/her own makefile, only
	164	# default source-code filenames are allowed
[215]	165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
[221]	166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
	167	# with environment variable mpilib
[223]	168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
	169	# using environment variable totalview
[246]	170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
	171	# interactive runs
[253]	172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
[260]	173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
	174	# dvr streaming server is automatically started using
	175	# new variable dvr_server and a configuration file
	176	# .dvrserver.config,
[261]	177	# processing of dvr output files using new script
	178	# process_dvr_output implemented, in order to make
	179	# dvr application more user friendly
[265]	180	# 20/03/09 - Marcus - update of n1ge command for lctit
[291]	181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
	182	# to be followed by a coupled atmosphere-ocean run
[343]	183	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
	184	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
[352]	185	# 08/07/09 - Siggi - default value for email_notification is none,
	186	# option -e added to subjob
[359]	187	# 19/08/09 - Marcus - MPI debug option
[362]	188	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
[367]	189	# 25/08/09 - BjornM - adpated for lck
[369]	190	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
[211]	191
[1]	192
	193	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	194
	195	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	196	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	197	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	198
	199	AddFilenames=""
	200	additional_conditions=""
	201	add_source_path=""
	202	afname=""
	203	archive_save=true
	204	archive_system=none
	205	compiler_name=""
	206	cond1=""
	207	cond2=""
	208	config_file=.mrun.config
[206]	209	coupled_dist=""
	210	coupled_mode="mpi1"
[1]	211	cpp_opts=""
[82]	212	cpp_options=""
[1]	213	cpumax=0
	214	cpurest=0
	215	delete_temporary_catalog=true
	216	do_batch=false
	217	do_compile=true
	218	do_remote=false
	219	do_stagein=true
	220	do_stageout=true
	221	do_trace=false
[352]	222	email_notification="none"
[1]	223	exclude=""
	224	executable=""
	225	execution_error=false
[67]	226	fimm=false
[1]	227	fname=test
	228	fromhost=""
[78]	229	global_revision=""
[122]	230	group_number=none
[1]	231	host=""
	232	host_file=""
	233	hp=""
	234	ignore_archive_error=false
	235	input_list=""
	236	interpreted_config_file=""
[164]	237	job_catalog="~/job_queue"
[1]	238	job_on_file=""
	239	keep_data_from_previous_run=false
[183]	240	link_local_input=false
[149]	241	link_local_output=false
[1]	242	localhost_realname=$(hostname)
	243	local_compile=false
[260]	244	local_dvrserver_running=.FALSE.
[1]	245	locat=normal
	246	mainprog=""
	247	makefile=""
	248	mc=$0
	249	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	250	do
	251	mc=`echo $mc \| cut -f2- -d"/"`
	252	done
	253	module_files=""
	254	mrun_script_name=$mc
[82]	255	netcdf_inc=""
	256	netcdf_lib=""
[1]	257	netcdf_support=false
	258	node_usage=default
	259	numprocs=""
[206]	260	numprocs_atmos=0
	261	numprocs_ocean=0
[1]	262	OOPT=""
	263	openmp=false
	264	output_list=""
	265	package_list=""
	266	punkte="..........................................................."
	267	queue=none
	268	read_from_config=""
[5]	269	restart_run=false
[146]	270	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	271	if [[ $return_addres = 130.75.105.158 ]]
	272	then
	273	return_addres=172.20.25.41
	274	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
	275	fi
	276	return_password=""
	277	return_username=$LOGNAME
	278	remotecall=false
	279	remote_username=""
[102]	280	run_coupled_model=false
[1]	281	run_mode=""
	282	scirocco=false
	283	store_on_archive_system=true
	284	striche=" ----------------------------------------------------------------------------"
	285	silent=false
	286	source_list=""
	287	source_path=SOURCE
	288	tasks_per_node=""
	289	threads_per_task=1
	290	tmpcreate=false
	291	tmp_data_catalog=""
	292	transfer_problems=false
	293	usern=$LOGNAME
	294	working_directory=`pwd`
	295	TOPT=""
	296	XOPT=""
	297	zeit=$( date \| cut -c 12-19 )
	298
	299	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	300	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	301
[66]	302	typeset -R30 calltime
[1]	303	typeset -L20 spalte1
	304	typeset -L40 spalte2
	305	typeset -L60 spalte3
	306	typeset -L35 string1=`date`
	307	typeset -L12 string2=$usern
	308	typeset -L12 string3=$localhost_realname
	309	typeset -L12 string4
	310	typeset -L12 string5
[201]	311	typeset -L30 version="MRUN 2.0 Rev$Rev: 369 $"
[1]	312
	313
	314
	315	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	316	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	317
	318	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	319	# EXPORTIERT WERDEN
	320	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	321	export group_number input_list memory numprocs output_list queue run_mode
[1]	322
	323
	324
	325	# FEHLERBEHANDLUNG
	326	# BEI EXIT:
[83]	327	trap 'rm -rf $working_directory/tmp_mrun
[69]	328	if [[ $locat != localhost ]]
[1]	329	then
[22]	330	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	331	# then
	332	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	333	#MRUN-calls on $localhost
	334	#
	335	#date and time user localhost remotehost termination mrun-command
	336	#--------------------------------------------------------------------------------------------------------------------
	337	#%STATEND%
	338	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	339	# fi
	340	#
	341	# # EINTRAG IN DIE STATISTIK-DATEI
	342	# string4=$host
	343	# string5=$locat
	344	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	345	# then
	346	# if [[ $do_batch = true ]]
	347	# then
	348	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	349	# else
	350	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	351	# fi
	352	# fi
[69]	353	echo " " > /dev/null
[1]	354	fi
	355
	356	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	357	then
	358
	359	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	360	(( i = 0 ))
	361	while (( i < iec ))
	362	do
	363	(( i = i + 1 ))
	364	printf "\n *** Execution of ERROR-command:\n"
	365	printf " >>> ${err_command[$i]}\n"
	366	eval ${err_command[$i]}
	367	done
	368	if [[ -n $interpreted_config_file ]] then
	369	rm -rf $interpreted_config_file
	370	fi
[71]	371	if [[ -n .mrun_environment ]] then
	372	rm -rf .mrun_environment
	373	fi
[1]	374	if [[ $tmpcreate = true ]]
	375	then
	376	printf "\n *** Contents of \"$TEMPDIR\":\n"
	377	ls -al; cd
	378	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	379	fi
[260]	380	if [[ "$dvrserver_id" != "" ]]
	381	then
	382	echo "+++ killing dvrserver_id=$dvrserver_id"
	383	kill $dvrserver_id
	384	fi
[1]	385	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	386	then
	387	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	388	fi
	389	printf "\n\n+++ MRUN killed \n\n"
	390	elif [[ $locat != control_c ]]
	391	then
	392	printf "\n\n --> all actions finished\n\n"
	393	printf " Bye, bye $usern !!\n\n"
	394	fi' exit
	395
	396
	397	# BEI TERMINAL-BREAK:
[83]	398	trap 'rm -rf $working_directory/tmp_mrun
[69]	399	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	400	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	401	then
	402	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	403	fi
[260]	404	if [[ "$dvrserver_id" != "" ]]
	405	then
	406	echo "+++ killing dvrserver_id=$dvrserver_id"
	407	kill $dvrserver_id
	408	fi
[1]	409	printf "\n+++ MRUN killed by \"^C\" \n\n"
	410	locat=control_c
	411	exit
	412	' 2
	413
	414
[22]	415	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	416	# BEEN SET
	417	if [[ "$PALM_BIN" = "" ]]
	418	then
	419	printf "\n +++ environment variable PALM_BIN has not been set"
	420	printf "\n please set it to the directory where the PALM scripts are located"
	421	locat=palm_bin; exit
	422	fi
[180]	423	export PATH=$PALM_BIN:$PATH
[22]	424
	425
[1]	426
	427	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	428	# FUER FOLGEJOBS BENOETIGT WIRD
[291]	429	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
[1]	430	do
	431	case $option in
	432	(a) afname=$OPTARG;;
	433	(A) store_on_archive_system=false; mc="$mc -A";;
	434	(b) do_batch=true; mc="$mc -b";;
	435	(B) delete_temporary_catalog=false; mc="$mc -B";;
	436	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	437	(C) restart_run=true; mc="$mc -C";;
[1]	438	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	439	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	440	(F) job_on_file="-D"; mc="$mc -F";;
[122]	441	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	442	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	443	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	444	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	445	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	446	(I) ignore_archive_error=true; mc="$mc -I";;
	447	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	448	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	449	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	450	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	451	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	452	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
	453	(O) use_openmp=true; mc="$mc -O";;
	454	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	455	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	456	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	457	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	458	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	459	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	460	(S) read_from_config=false; mc="$mc -S";;
	461	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
	462	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
	463	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	464	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	465	(v) silent=true; mc="$mc -v";;
	466	(x) do_trace=true;set -x; mc="$mc -x";;
	467	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	468	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	469	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[1]	470	(\?) printf "\n +++ unknown option $OPTARG \n"
	471	printf "\n --> type \"$0 ?\" for available options \n"
	472	locat=parameter;exit;;
	473	esac
	474	done
	475
	476
	477	# EVTL. POSITIONSPARAMETER EINLESEN
	478	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	479	shift OPTIND-1
	480
	481
	482	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	483	if [[ "$1" = "?" ]]
	484	then
	485	(printf "\n *** mrun can be called as follows:\n"
[291]	486	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
[1]	487	printf "\n Description of available options:\n"
	488	printf "\n Option Description Default-Value"
	489	printf "\n -a base name of input files equiv. -d"
	490	printf "\n -A no archiving when using file-attribute fl"
	491	printf "\n -b batch-job on local machine ---"
	492	printf "\n -B do not delete temporary directory at end ---"
	493	printf "\n -c configuration file .mrun.config"
	494	printf "\n -d base name of files attached to program test"
	495	printf "\n -D preprocessor(cpp)-directives \"\" "
	496	printf "\n -F create remote job file only ---"
	497	printf "\n -h execution host $localhost_realname"
	498	printf "\n -i INPUT control list \"\" "
	499	printf "\n -I archiving errors of previous batch-jobs"
	500	printf "\n will be ignored"
	501	printf "\n -k keep data from previous run"
	502	printf "\n -K additional conditions for controling"
	503	printf "\n usage of conditional code and"
	504	printf "\n env-variables in configuration file \"\" "
	505	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	506	printf "\n -M Makefile name Makefile"
	507	printf "\n -n node usage (shared/not_shared) depending on -h"
	508	printf "\n -o OUTPUT control list \"\" "
	509	printf "\n -O use OpenMP ---"
	510	printf "\n -p software package list \"\" "
	511	printf "\n -q queue \"$queue\" "
	512	printf "\n -r run control list (combines -i -o) \"\" "
	513	printf "\n -s filenames of routines to be compiled \"\" "
	514	printf "\n must end with .f, .f90, .F, or .c !"
	515	printf "\n use \"..\" for more than one file and wildcards"
	516	printf "\n -s TEST compiles all files with w-permit"
	517	printf "\n -S config file interpreted by shellscript ---"
	518	printf "\n -t allowed cpu-time in seconds (batch) 0"
	519	printf "\n -T tasks per node depending on -h"
	520	printf "\n -u username on remote machine \"\" "
	521	printf "\n -v no prompt for confirmation ---"
	522	printf "\n -x tracing of mrun for debug purposes ---"
	523	printf "\n -X # of processors (on parallel machines) 1"
[291]	524	printf "\n -y add appendix \"_O\" to all local output"
	525	printf "\n files (ocean precursor runs followed by"
	526	printf "\n coupled atmosphere-ocean runs) ---"
[206]	527	printf "\n -Y run coupled model, \"#1 #2\" with"
	528	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[1]	529	printf "\n "
	530	printf "\n Possible values of positional parameter <modus>:"
	531	printf "\n \"?\" - this outline \n\n") \| more
	532	exit
	533	elif [[ "$1" != "" ]]
	534	then
	535	printf "\n +++ positional parameter $1 unknown \n"
	536	locat=parameter; exit
	537	fi
	538
	539
	540
	541	# KURZE STARTMELDUNG
	542	printf "\n*** $version "
	543	printf "\n will be executed. Please wait ..."
	544
	545
[82]	546
	547	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	548	if [[ ! -f $config_file ]]
	549	then
	550	printf "\n\n +++ configuration file: "
	551	printf "\n $config_file"
	552	printf "\n does not exist"
	553	locat=connect; exit
	554	fi
	555
	556
	557	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	558	line=""
	559	grep "%host_identifier" $config_file > tmp_mrun
	560	while read line
	561	do
[206]	562	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	563	then
	564	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	565	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	566	if [[ $localhost_realname = $HOSTNAME ]]
[82]	567	then
	568	localhost=$host_identifier
	569	break
	570	fi
	571	fi
	572	done < tmp_mrun
	573
	574	if [[ "$localhost" = "" ]]
	575	then
	576	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	577	printf "\n for local host \"$localhost_realname\"."
	578	printf "\n Please add line"
	579	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	580	printf "\n to the configuration file."
	581	locat=localhost; exit
	582	fi
	583
	584
	585	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	586	case $localhost_realname in
	587	(breg-en0\|berni-en0) archive_system=tivoli;;
	588	(cs*) archive_system=ut;;
	589	(fimm.bccs.uib.no) fimm=true;;
	590	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	591	(hreg-en0\|hanni-en0) archive_system=tivoli;;
	592	(scirocco) scirocco=true;;
	593	esac
	594
	595
	596
[1]	597	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	598	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	599	[[ "$afname" = "" ]] && afname=$fname
	600
	601
	602	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	603	if [[ "$run_mode" != "" ]]
	604	then
	605	input_list="$input_list $run_mode"
	606	output_list="$output_list $run_mode"
	607	fi
	608
	609
	610	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	611	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	612	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	613	# STARTET)
	614	if [[ "$fromhost" = "" ]]
	615	then
	616	fromhost=$localhost
	617	fi
	618
	619
	620	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
	621	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
	622	then
	623	source_list=TEST
	624	local_compile=true
	625	host=$localhost
	626	fi
	627
	628
	629	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	630	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	631	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	632	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	633	if [[ -n $host && "$host" != $localhost ]]
	634	then
	635	do_batch=true
	636	do_remote=true
	637	case $host in
[367]	638	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lck) true;;
[1]	639	(*) printf "\n"
[83]	640	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	641	printf "\n is not available"
[1]	642	locat=nqs; (( iec = 0 )); exit;;
	643	esac
	644	else
	645	host=$localhost
	646	fi
	647
	648
	649	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	650	if [[ -n $additional_conditions ]]
	651	then
[69]	652	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	653	cond1=`echo $additional_conditions \| cut -d" " -f1`
	654	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	655	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	656	if [[ -n $dummy ]]
	657	then
	658	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	659	locat=options; exit
	660	fi
	661	fi
	662
	663
[206]	664	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	665	if [[ $run_coupled_model = true ]]
	666	then
	667
	668	if [[ -n $coupled_dist ]]
	669	then
	670
	671	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	672	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	673
	674	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	675	then
	676
	677	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	678	printf "\n PEs (total) : $numprocs"
	679	printf "\n PEs (atmosphere): $numprocs_atmos"
	680	printf "\n PEs (ocean) : $numprocs_ocean"
	681	locat=coupling; exit
	682
	683	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
	684	# THIS SHOULD BE REMOVED IN FUTURE
	685	elif (( $numprocs_ocean != $numprocs_atmos ))
	686	then
	687
	688	printf "\n +++ currently only 1:1 topologies are supported"
	689	printf "\n PEs (total) : $numprocs"
	690	printf "\n PEs (atmosphere): $numprocs_atmos"
	691	printf "\n PEs (ocean) : $numprocs_ocean"
	692	(( numprocs_atmos = $numprocs / 2 ))
	693	(( numprocs_ocean = $numprocs / 2 ))
	694	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
	695
	696	fi
	697
	698	else
	699
	700	(( numprocs_ocean = $numprocs / 2 ))
	701	(( numprocs_atmos = $numprocs / 2 ))
	702
	703	fi
	704	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	705
	706	# GET coupled_mode FROM THE CONFIG FILE
	707	line=""
	708	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	709	while read line
	710	do
	711	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
	712	then
	713	coupled_mode="mpi2"
	714	fi
	715	done < tmp_mrun
	716
	717	fi
	718
	719
[1]	720	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	721	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	722	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	723	then
	724	if [[ $ignore_archive_error = false ]]
	725	then
	726	printf "\n +++ data archiving of previous run failed"
	727	printf "\n see directory \~/job_queue on remote machine"
	728	locat=archive; exit
	729	else
	730	printf "\n +++ warning: data archiving in a previous run failed"
	731	printf "\n MRUN continues, trying to get backup copy"
	732	fi
	733	fi
	734
	735
	736
	737	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	738	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	739	if [[ "$read_from_config" = false ]]
	740	then
	741
	742	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	743	while read zeile
	744	do
	745	[[ $silent = false ]] && printf "."
	746
	747
	748	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	749	# ERSETZEN
	750	eval zeile=\"$zeile\"
	751
	752
	753	# INTERPRETATION DER ZEILE
[21]	754	if [[ "$(echo $zeile)" = "" ]]
[1]	755	then
[21]	756	# LEERZEILE, KEINE AKTION
	757	continue
[1]	758
[21]	759	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	760	then
	761
[1]	762	# ZEILE IST KOMMENTARZEILE
	763	true
	764
	765	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	766	then
	767
	768	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	769	zeile=$(echo $zeile \| cut -c2-)
[69]	770	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	771	var=`echo $zeile \| cut -d" " -f1`
	772	value=`echo $zeile \| cut -d" " -s -f2`
	773	for_host=`echo $zeile \| cut -d" " -s -f3`
	774	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	775	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	776
	777	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	778	then
	779
	780	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	781	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	782	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	783
	784
	785	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	786	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	787	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	788	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	789	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	790	# KONFIGURATIONSDATEI
	791	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	792	then
	793	eval $var=\$value
	794
	795	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	796	if [[ $do_trace = true ]]
	797	then
	798	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	799	fi
	800	fi
	801
	802	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	803	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	804	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	805	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	806	if [[ $var = host ]]
	807	then
	808	if [[ -n $host && "$host" != $localhost ]]
	809	then
	810	do_batch=true
	811	do_remote=true
	812	case $host in
[367]	813	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lck) true;;
[83]	814	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	815	printf "\n is not available"
[1]	816	locat=nqs; exit;;
	817	esac
	818	else
	819	host=$localhost
	820	fi
	821	fi
	822
	823	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	824	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	825	# DEN PROGRAMMEN BENOETIGT WERDEN
	826	export $var
	827	fi
	828
	829
	830
	831
	832	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	833	then
	834
	835	# ZEILE DEFINIERT ERROR-KOMMANDO
	836	(( iec = iec + 1 ))
	837	zeile=$(echo $zeile \| cut -c4-)
	838	err_command[$iec]="$zeile"
	839
	840	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	841	then
	842
	843	# ZEILE DEFINIERT INPUT-KOMMANDO
	844	(( iic = iic + 1 ))
	845	zeile=$(echo $zeile \| cut -c4-)
	846	in_command[$iic]="$zeile"
	847
	848	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	849	then
	850
	851	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	852	(( ioc = ioc + 1 ))
	853	zeile=$(echo $zeile \| cut -c4-)
	854	out_command[$ioc]="$zeile"
	855
	856	else
	857
	858	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	859	# s2a: in/out - Feld
	860	# s2b: loc - Feld (optional)
	861	# s2c: tr/ar - Feld (optional)
[69]	862	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	863	s1=`echo $zeile \| cut -d" " -f1`
	864	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	865	s2a=$(echo $s2 \| cut -d":" -f1)
	866	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	867	then
	868	s2b=""
	869	s2c=""
	870	else
[69]	871	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	872	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	873	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	874	fi
[69]	875	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	876	s3=`echo $zeile \| cut -d" " -f3`
	877	s4=`echo $zeile \| cut -d" " -s -f4`
	878	s5=`echo $zeile \| cut -d" " -s -f5`
	879	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	880
	881
	882	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	883	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	884	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	885	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	886	# HANDEN SEIN MUSS (D.H. s2b = loc)
	887	IFSALT="$IFS"; IFS="$IFS:"
	888	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	889	then
	890	found=false
	891	for actual in $input_list
	892	do
	893	for formal in $s3
	894	do
	895	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	896	done
	897	done
	898	if [[ $found = true ]]
	899	then
	900	(( iin = iin + 1 ))
	901	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	902	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	903	extin[$iin]=$s6
	904	fi
	905	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	906	then
	907	found=false
	908	for actual in $output_list
	909	do
	910	for formal in $s3
	911	do
	912	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	913	done
	914	done
	915	if [[ $found = true ]]
	916	then
	917	(( iout = iout + 1 ))
	918	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	919	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	920	fi
	921	elif [[ "$s2a" != in && "$s2a" != out ]]
	922	then
	923	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	924	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	925	locat=connect; exit
	926	fi
	927	IFS="$IFSALT"
	928	fi
	929	done < $config_file
	930
	931	else
	932
	933
	934	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	935	[[ $silent = false ]] && printf "..."
	936	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	937	export interpreted_config_file=.icf.$RANDOM
	938
	939
[69]	940
	941	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	942	# VERFUEGUNG STELLEN
	943	cat > .mrun_environment << %%END%%
	944	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	945	config_file = '$config_file', do_remote = '$do_remote',
	946	do_trace = '$do_trace', host = '$host',
	947	input_list = '$input_list', icf = '$interpreted_config_file',
	948	localhost = '$localhost', output_list = '$output_list' /
	949
	950	%%END%%
	951
	952	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	953	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	954	mrun_memory=$memory
[127]	955	mrun_group_number=$group_number
[69]	956	mrun_cpumax=$cpumax
	957	mrun_numprocs=$numprocs
	958
[251]	959	if [[ $localhost_realname = "sx-fep" ]]
[66]	960	then
[251]	961	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	962	else
	963	interpret_config.x
	964	fi
[71]	965	rm .mrun_environment
[1]	966
[71]	967
[1]	968	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	969	chmod u+x $interpreted_config_file
	970	export PATH=$PATH:.
	971	. $interpreted_config_file
[71]	972	rm $interpreted_config_file
[1]	973
[71]	974
[69]	975	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[71]	976	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	977	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[71]	978	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	979	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
[69]	980
[1]	981	fi
	982
	983
	984	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	985	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	986	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	987	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	988	if [[ "$SOURCES_COMPLETE" = "" ]]
	989	then
	990
	991	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	992	# VEREINBART WURDE
	993	source_path=""
	994	line=""
	995	grep "%source_path" $config_file > tmp_mrun
	996	while read line
	997	do
	998	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	999	then
	1000	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	1001	then
	1002	global_source_path=`echo $line \| cut -d" " -f2`
	1003	fi
	1004	fi
	1005	done < tmp_mrun
	1006
	1007	line=""
	1008	found=false
	1009	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	1010	while read line
	1011	do
	1012	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1013	then
	1014	if [[ $found = true ]]
	1015	then
	1016	printf "\n\n +++ more than one source path found in configuration file"
	1017	printf "\n for local host \"$localhost\" "
	1018	locat=source_path; exit
	1019	fi
	1020	source_path=`echo $line \| cut -d" " -f2`
	1021	found=true
	1022	fi
	1023	done < tmp_mrun
	1024	rm tmp_mrun
	1025
	1026	if [[ "$source_path" = "" ]]
	1027	then
	1028	if [[ "$global_source_path" != "" ]]
	1029	then
	1030	source_path=$global_source_path
	1031	else
	1032	printf "\n\n +++ no source path found in configuration file"
	1033	printf "\n for local host \"$localhost\" "
	1034	locat=source_path; exit
	1035	fi
	1036	fi
	1037	eval source_path=$source_path
	1038
	1039	if [[ ! -d $source_path ]]
	1040	then
	1041	printf "\n\n +++ source path \"$source_path\" on local host"
	1042	printf "\n \"$localhost\" does not exist"
	1043	locat=source_path; exit
	1044	fi
	1045
	1046	fi
	1047
	1048
[78]	1049	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	1050	# DURCH OPTION -G MITGETEILT)
	1051	if [[ "$global_revision" = "" ]]
	1052	then
	1053	global_revision=`svnversion $source_path 2>/dev/null`
	1054	global_revision="Rev: $global_revision"
	1055	fi
[1]	1056
[78]	1057
[1]	1058	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1059	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1060	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1061	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1062	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1063	if [[ -n $host && "$host" != $localhost ]]
	1064	then
	1065	do_batch=true
	1066	do_remote=true
	1067	case $host in
[367]	1068	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lck) true;;
[1]	1069	(*) printf "\n"
[83]	1070	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1071	printf "\n is not available"
[1]	1072	locat=nqs; (( iec = 0 )); exit;;
	1073	esac
	1074	else
	1075	host=$localhost
	1076	fi
	1077
	1078
	1079	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1080	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1081	then
	1082
	1083	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1084	if [[ ! -n $numprocs ]]
	1085	then
	1086	printf "\n"
	1087	printf "\n +++ option \"-K parallel\" requires additional specification"
	1088	printf "\n of the number of processors to be used by"
	1089	printf "\n mrun-option \"-X\" or by environment-variable"
	1090	printf "\n \"numprocs\" in the configuration file"
	1091	locat=numprocs; (( iec = 0 )); exit
	1092	fi
	1093
	1094	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1095	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1096	# GESAMTPROZESSORANZAHL IST
[251]	1097	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
[1]	1098	then
	1099	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
	1100	(( ival = $tasks_per_node ))
	1101	(( pes = numprocs ))
	1102	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1103	# then
	1104	# (( pes = pes - 1 ))
	1105	# fi
	1106	(( ii = pes / ival ))
	1107	if (( pes - ii * ival > 0 ))
	1108	then
	1109	printf "\n"
	1110	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1111	printf "\n divisor of the total number of processors (option \"-X\")"
	1112	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1113	locat=tasks_per_node; (( iec = 0 )); exit
	1114	fi
	1115	fi
	1116
	1117	# IBMY HAT NUR EINEN KNOTEN
	1118	if [[ $host = ibmy ]]
	1119	then
	1120	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1121	then
	1122	printf "\n"
	1123	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1124	printf "\n total number of processors (option \"-X\")"
	1125	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1126	locat=tasks_per_node; (( iec = 0 )); exit
	1127	fi
	1128	fi
	1129
	1130	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
	1131	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
	1132	if [[ $use_openmp = true ]]
	1133	then
	1134	threads_per_task=$tasks_per_node
	1135	tasks_per_node=1
	1136	fi
	1137	OOPT="-O $threads_per_task"
	1138	TOPT="-T $tasks_per_node"
	1139
	1140	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1141	if [[ "$tasks_per_node" != "" ]]
	1142	then
	1143	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1144	fi
	1145
	1146	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1147	# SETZEN
	1148	if [[ $node_usage = default ]]
	1149	then
	1150	if [[ $host = ibms ]]
	1151	then
	1152	node_usage=shared
[118]	1153	elif [[ $host = lctit ]]
	1154	then
[265]	1155	node_usage=RAM64GB
[181]	1156	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1157	then
	1158	node_usage=singlejob
[1]	1159	else
	1160	node_usage=not_shared
	1161	fi
	1162	fi
[181]	1163
[265]	1164	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
[1]	1165	then
	1166	printf "\n"
	1167	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1168	printf "\n \"shared\" or \"not_shared\""
	1169	locat=tasks_per_node; (( iec = 0 )); exit
	1170	fi
	1171
	1172	fi
	1173
	1174	# PRUEFEN, OB HOSTFILE EXISTIERT
	1175	if [[ -n $hostfile ]]
	1176	then
	1177	if [[ ! -f $hostfile ]]
	1178	then
	1179	printf "\n"
	1180	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1181	locat=hostfile; exit
	1182	fi
	1183	fi
	1184
	1185	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1186	if [[ $host = ibmy && $do_remote = false ]]
	1187	then
	1188	if [[ ! -f $HOME/.rhosts ]]
	1189	then
	1190	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1191	printf "\n\n *** file:"
	1192	printf "\n $HOME/.rhosts"
	1193	printf "\n was created\n"
	1194	fi
	1195	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1196	then
	1197	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1198	printf "\n\n *** file:"
	1199	printf "\n $HOME/.rhosts"
	1200	printf "\n was extended by the name of the current host\n"
	1201	fi
	1202	fi
	1203
	1204
	1205
	1206	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1207	if [[ $queue = none ]]
	1208	then
	1209	case $host in
	1210	(ibmb) if [[ $node_usage = shared ]]
	1211	then
	1212	queue=cshare
	1213	else
	1214	queue=csolo
	1215	fi;;
[312]	1216	(ibmh) queue=no_class;;
[1]	1217	(ibmy) queue=parallel;;
[191]	1218	(lcsgib) queue=bigq;;
	1219	(lcsgih) queue=bigq;;
[265]	1220	(lctit) queue=RAM64GB;;
[1]	1221	(nech) queue=none;;
[253]	1222	(necriam) queue=SP;;
[1]	1223	(unics) queue=unics;;
	1224	esac
	1225	fi
	1226
	1227
	1228	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1229	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1230	# ERMITTELN
	1231	(( i = 0 ))
	1232	while (( i < iin ))
	1233	do
	1234	(( i = i + 1 ))
	1235	(( maxcycle = 0 ))
	1236
	1237	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1238	if [[ "${actionin[$i]}" = di ]]
	1239	then
	1240	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1241	# REM-MASCHINE AUSWERTEN
	1242	eval filename=${pathin[$i]}/${endin[$i]}
	1243	else
	1244	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1245	# REM-MASCHINE AUSWERTEN
	1246	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1247	fi
	1248
	1249	# PRUEFEN AUF VORHANDENSEIN
	1250	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1251	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1252	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1253	then
	1254	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1255	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1256	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1257	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1258	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1259	if [[ "${transin[$i]}" != "locopt" ]]
	1260	then
	1261	printf "\n\n +++ INPUT-file: "
	1262	if [[ "${extin[$i]}" = "" ]]
	1263	then
	1264	printf "\n $filename"
	1265	else
	1266	printf "\n $filename.${extin[$i]}"
	1267	fi
	1268	printf "\n does not exist\n"
	1269	locat=input; exit
	1270	else
	1271	transin[$i]="unavailable"
	1272	fi
	1273	else
	1274
	1275	# ZYKLUSNUMMER FESTSTELLEN
	1276	ls -1 -d $filename > filelist 2>/dev/null
	1277	ls -1 -d $filename.* >> filelist 2>/dev/null
	1278	while read zeile
	1279	do
	1280	cycle=$(print $zeile \| cut -f2 -d".")
	1281	if [[ "$cycle" = "$zeile" ]]
	1282	then
	1283	(( icycle = 0 ))
	1284	elif [[ "$cycle" = "${extin[$i]}" ]]
	1285	then
	1286	(( icycle = 0 ))
	1287	else
	1288	(( icycle = $cycle ))
	1289	fi
	1290	if (( icycle > maxcycle ))
	1291	then
	1292	(( maxcycle = icycle ))
	1293	file_to_be_used=$zeile
	1294	fi
	1295	done <filelist
	1296	rm filelist
	1297
	1298	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1299	if (( maxcycle > 0 ))
	1300	then
	1301	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1302	then
	1303	filename=${filename}.$maxcycle.${extin[$i]}
	1304	else
	1305	filename=${filename}.$maxcycle
	1306	fi
	1307	else
	1308	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1309	then
	1310	filename=${filename}.${extin[$i]}
	1311	fi
	1312	fi
	1313
	1314	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1315	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1316	absnamein[$i]=$filename
	1317	if (( maxcycle > 0 ))
	1318	then
	1319	if [[ "${actionin[$i]}" = di ]]
	1320	then
	1321	frelin[$i]=${endin[$i]}.$maxcycle
	1322	else
	1323	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1324	fi
	1325	else
	1326	if [[ "${actionin[$i]}" = di ]]
	1327	then
	1328	frelin[$i]=${endin[$i]}
	1329	else
	1330	frelin[$i]=${afname}${endin[$i]}
	1331	fi
	1332	fi
	1333
	1334	fi
	1335	done
	1336
	1337
	1338	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1339	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1340	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1341	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1342	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1343	(( i = 0 ))
	1344	while (( i < iout ))
	1345	do
	1346	(( i = i + 1 ))
	1347	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1348	then
[260]	1349	if [[ "${actionout[$i]}" = tr ]]
[1]	1350	then
	1351	actionout[$i]=""
[260]	1352	elif [[ "${actionout[$i]}" = trpe ]]
	1353	then
	1354	actionout[$i]=pe
[1]	1355	elif [[ "${actionout[$i]}" = tra ]]
	1356	then
	1357	actionout[$i]=a
	1358	fi
	1359	(( maxcycle = 0 ))
	1360	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1361	eval catalogname=${pathout[$i]}
	1362	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1363	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1364	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1365	then
	1366
	1367	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1368	if cat /dev/null > $filename
	1369	then
	1370	rm $filename
	1371	else
	1372
	1373	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1374	if [[ ! -d $catalogname ]]
	1375	then
	1376	if mkdir -p $catalogname
	1377	then
	1378	printf "\n\n *** directory:"
	1379	printf "\n $catalogname"
	1380	printf "\n was created\n"
	1381	else
	1382	printf "\n\n +++ OUTPUT-file:"
	1383	printf "\n $filename"
	1384	printf "\n cannot be created, because directory does not exist"
	1385	printf "\n and cannot be created either"
	1386	printf "\n"
	1387	locat=output ; exit
	1388	fi 2>/dev/null
	1389	else
	1390	printf "\n\n +++ OUTPUT-file:"
	1391	printf "\n $filename"
	1392	printf "\n cannot be created, although directory exists"
	1393	printf "\n"
	1394	locat=output ; exit
	1395	fi
	1396	fi 2>/dev/null
	1397	else
	1398
	1399	# ZYKLUSNUMMER FESTSTELLEN
	1400	ls -1 -d $filename > filelist 2>/dev/null
	1401	ls -1 -d $filename.* >> filelist 2>/dev/null
	1402	while read zeile
	1403	do
	1404	cycle=$(print $zeile \| cut -f2 -d".")
	1405	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1406	then
	1407	(( icycle = 1 ))
	1408	else
	1409	(( icycle = $cycle + 1 ))
	1410	fi
	1411	if (( icycle > maxcycle ))
	1412	then
	1413	(( maxcycle = icycle ))
	1414	fi
	1415	done <filelist
	1416	rm filelist
	1417	fi
	1418
	1419	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1420	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1421	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1422	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1423	if [[ "${actionout[$i]}" != a ]]
	1424	then
	1425	if (( maxcycle > 0 ))
	1426	then
	1427	filename=${filename}.$maxcycle
	1428	if cat /dev/null > $filename
	1429	then
	1430	rm $filename
	1431	else
	1432	printf "\n +++ OUTPUT-file:"
	1433	printf "\n $filename"
	1434	printf "\n cannot be created"
	1435	locat=output ; exit
	1436	fi
	1437	fi
	1438	else
	1439	(( maxcycle = maxcycle - 1 ))
	1440	if (( maxcycle > 0 ))
	1441	then
	1442	filename=${filename}.$maxcycle
	1443	fi
	1444	fi
	1445
	1446	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1447	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1448	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1449	pathout[$i]=$filename
	1450	if (( maxcycle > 0 ))
	1451	then
	1452	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1453	else
	1454	frelout[$i]=${fname}${endout[$i]}
	1455	fi
	1456
	1457	fi
	1458	done
	1459
	1460
[260]	1461	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1462	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1463	then
[260]	1464	if [[ "$dvr_inc" = "" ]]
[83]	1465	then
[260]	1466	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1467	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1468	locat=dvr; exit
[83]	1469	fi
[260]	1470	if [[ "$dvr_lib" = "" ]]
[83]	1471	then
[260]	1472	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1473	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1474	locat=dvr; exit
[83]	1475	fi
	1476	fi
	1477
	1478
[1]	1479	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1480	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1481	# UEBERSETZT ZU WERDEN)
	1482	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1483	then
	1484	printf "\n +++ neither main program nor executable defined"
	1485	locat=source; exit
	1486	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1487	then
	1488	printf "\n +++ main program as well as executable defined"
	1489	locat=source; exit
	1490	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1491	then
	1492	do_compile=false
	1493	fi
	1494
	1495
[191]	1496	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1497	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1498	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1499	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1500	then
	1501	rm -rf SOURCES_FOR_RUN_$fname
	1502	mkdir SOURCES_FOR_RUN_$fname
	1503	fi
	1504
	1505
[1]	1506	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1507	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1508	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1509	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1510	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1511	then
	1512
[5]	1513	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
	1514	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
[1]	1515
	1516
	1517	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
	1518	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
	1519	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
	1520	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
	1521	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
	1522	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
	1523	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
	1524	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
	1525	# GESAMMELT
[5]	1526	if [[ "$source_list" = WRITE_PERMIT ]]
[1]	1527	then
	1528
	1529	source_list=""
	1530	cd $source_path
	1531
	1532
	1533	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
	1534	Names=$(ls -1 *.f90 2>&1)
	1535	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
	1536	Names=$(ls -1 *.F90 2>&1)
	1537	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
	1538	Names=$(ls -1 *.F 2>&1)
	1539	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
	1540	Names=$(ls -1 *.f 2>&1)
	1541	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
	1542	Names=$(ls -1 *.c 2>&1)
	1543	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
	1544
	1545
	1546	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
	1547	for dateiname in $Filenames
	1548	do
	1549	if [[ -w $dateiname ]]
	1550	then
	1551	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
	1552	then
	1553	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1554	source_list=$source_list"$dateiname "
	1555	fi
	1556	fi
	1557	done
	1558
	1559	cd - > /dev/null
	1560
	1561
[5]	1562	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
	1563	then
	1564
	1565	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1566	source_list=""
	1567	cd $source_path
	1568
	1569
	1570	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1571	if [[ ! -d .svn ]]
	1572	then
	1573	printf "\n\n +++ source directory"
	1574	printf "\n \"$source_path\" "
	1575	printf "\n is not under control of \"subversion\"."
[306]	1576	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1577	fi
	1578
	1579
	1580	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1581	Filenames=""
[69]	1582	svn status > tmp_mrun
	1583	while read line
[5]	1584	do
	1585	firstc=`echo $line \| cut -c1`
	1586	if [[ $firstc = M \|\| $firstc = "?" ]]
	1587	then
	1588	Name=`echo "$line" \| cut -c8-`
	1589	extension=`echo $Name \| cut -d. -f2`
	1590	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1591	then
	1592	Filenames="$Filenames "$Name
	1593	fi
	1594	fi
[69]	1595	done < tmp_mrun
[5]	1596
	1597
	1598	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1599	for dateiname in $Filenames
	1600	do
	1601	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1602	source_list=$source_list"$dateiname "
	1603	done
	1604
	1605	cd - > /dev/null
	1606
	1607
[1]	1608	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1609	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1610	# VORHANDEN
[5]	1611	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1612	then
	1613
	1614	cd $source_path
	1615
	1616	for filename in $source_list
	1617	do
	1618
	1619	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1620	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1621	then
	1622	printf "\n +++ source code file: $filename"
	1623	printf "\n must not contain (\"/\") "
	1624	locat=source; exit
	1625	fi
	1626
	1627	if [[ ! -f $filename ]]
	1628	then
	1629	printf "\n +++ source code file: $filename"
	1630	printf "\n does not exist"
	1631	locat=source; exit
	1632	else
	1633	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1634	fi
	1635
	1636	done
	1637
	1638	cd - > /dev/null
	1639
	1640	fi
	1641
	1642
	1643	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1644	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1645	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1646	if [[ $restart_run != true ]]
[1]	1647	then
	1648
	1649	if [[ ! -f "$source_path/$mainprog" ]]
	1650	then
	1651	printf "\n\n +++ main program: $mainprog"
	1652	printf "\n does not exist in source directory"
	1653	printf "\n \"$source_path\"\n"
	1654	locat=source; exit
	1655	else
	1656	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1657	then
	1658	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1659	source_list=${mainprog}" $source_list"
	1660	fi
	1661	fi
	1662	fi
	1663
	1664
[211]	1665	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1666	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1667	if [[ "$restart_run" != true ]]
	1668	then
	1669	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1670	if [[ ! -f $makefile ]]
	1671	then
	1672	printf "\n +++ file \"$makefile\" does not exist"
	1673	locat=make; exit
	1674	else
	1675	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1676	fi
	1677	fi
	1678
	1679
[1]	1680	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1681	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1682	then
	1683
	1684	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1685	if [[ ! -d $add_source_path ]]
	1686	then
	1687	printf "\n\n +++ WARNING: additional source code directory"
	1688	printf "\n \"$add_source_path\" "
	1689	printf "\n does not exist or is not a directory."
	1690	printf "\n No source code will be used from this directory!\n"
	1691	add_source_path=""
	1692	sleep 3
	1693	else
	1694
	1695	cd $add_source_path
[211]	1696	found=false
[1]	1697
	1698	Names=$(ls -1 *.f90 2>&1)
	1699	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1700	Names=$(ls -1 *.F90 2>&1)
	1701	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1702	Names=$(ls -1 *.F 2>&1)
	1703	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1704	Names=$(ls -1 *.f 2>&1)
	1705	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1706	Names=$(ls -1 *.c 2>&1)
	1707	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1708
	1709	cd - > /dev/null
	1710	cd SOURCES_FOR_RUN_$fname
	1711
[211]	1712	# COPY MAKEFILE IF EXISTING
	1713	if [[ -f $add_source_path/Makefile ]]
	1714	then
	1715	printf "\n\n *** user Makefile from directory"
	1716	printf "\n \"$add_source_path\" is used \n"
	1717	sleep 1
	1718	cp $add_source_path/Makefile .
	1719	fi
	1720
[1]	1721	for dateiname in $AddFilenames
	1722	do
	1723	if [[ -f $dateiname ]]
	1724	then
	1725	printf "\n +++ source code file \"$dateiname\" found in additional"
	1726	printf "\n source code directory \"$add_source_path\" "
[211]	1727	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1728	printf "\n from directory \"$source_path\"."
[1]	1729	locat=source; exit
	1730	fi
	1731
	1732	cp $add_source_path/$dateiname .
	1733	source_list="$source_list $dateiname"
	1734
[211]	1735	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1736	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1737	then
	1738	printf "\n\n +++ user file \"$dateiname\" "
	1739	printf "\n is not listed in Makefile \n"
	1740	locat=source; exit
	1741	else
	1742
[1]	1743	# Default User-Interface von der Liste entfernen, falls Datei
	1744	# ein User-Interface enthaelt
[211]	1745	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1746	# then
	1747	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1748	# then
	1749	# rm -rf user_interface.f90
	1750	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1751	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1752	# printf "\n since a user-interface is found in file"
	1753	# printf "\n \"$add_source_path/$dateiname\" \n"
	1754	# sleep 3
	1755	# else
	1756	if [[ $found = false ]]
[1]	1757	then
[211]	1758	found=true
	1759	printf "\n\n *** following user file(s) added to the"
	1760	printf " files to be translated:\n "
[1]	1761	fi
[211]	1762	printf "$dateiname "
	1763	sleep 0.5
[1]	1764	fi
	1765	done
[211]	1766	[[ $found = true ]] && printf "\n"
[1]	1767	cd - > /dev/null
	1768	fi
	1769	fi
	1770
	1771
	1772	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1773	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1774	if [[ $restart_run != true && -n $package_list ]]
[1]	1775	then
	1776
	1777	cd $source_path
	1778
	1779	for package in $package_list
	1780	do
	1781
	1782	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1783
	1784	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1785	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1786	# LIEFERT
	1787	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1788
	1789
	1790	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1791	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1792	for source_list_name in $package_source_list
	1793	do
	1794	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1795	then
	1796
	1797	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1798	ending=`echo $source_list_name \| cut -f2 -d.`
	1799	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1800	then
	1801	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1802	source_list="$source_list $source_list_name"
	1803	fi
	1804	fi
	1805	done
	1806	done
	1807
	1808	cd - > /dev/null
	1809	fi
	1810
	1811
	1812	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1813	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1814	# if [[ "$restart_run" != true ]]
	1815	# then
	1816	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1817	# if [[ ! -f $makefile ]]
	1818	# then
	1819	# printf "\n +++ file \"$makefile\" does not exist"
	1820	# locat=make; exit
	1821	# else
	1822	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1823	# fi
	1824	# fi
[1]	1825
	1826	fi # do_compile=true
	1827
	1828
	1829	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1830	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1831	if [[ $do_compile = true ]]
	1832	then
	1833
	1834	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1835	# ZUSAMMENSETZEN
[83]	1836	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1837	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1838	then
[82]	1839	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1840	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1841	then
[82]	1842	cpp_options="$cpp_options -D__nec"
	1843	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1844	then
	1845	cpp_options="$cpp_options -D__lc"
[1]	1846	else
[82]	1847	cpp_options="$cpp_options -D__$localhost"
[1]	1848	fi
[83]	1849
	1850	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1851	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1852	then
[82]	1853	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1854	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1855	else
[82]	1856	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1857	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1858	fi
[83]	1859
	1860	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1861	if [[ -n $package_list ]]
	1862	then
	1863	for package in $package_list
	1864	do
	1865	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1866	then
	1867	if [[ $package != "dvrp_graphics+1PE" ]]
	1868	then
[82]	1869	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1870	else
[82]	1871	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1872	export use_seperate_pe_for_dvrp_output=true
	1873	fi
	1874	else
	1875	if [[ $package != "dvrp_graphics+1PE" ]]
	1876	then
[82]	1877	cpp_options="$cpp_options -D__$package"
[1]	1878	else
[82]	1879	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1880	export use_seperate_pe_for_dvrp_output=true
	1881	fi
	1882	fi
	1883	done
	1884	fi
[83]	1885
	1886	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1887	if [[ -n $cpp_opts ]]
	1888	then
	1889	for popts in $cpp_opts
	1890	do
[82]	1891	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1892	then
	1893	cpp_options="${cpp_options},-D__$popts=__$popts"
	1894	else
	1895	cpp_options="$cpp_options -D__$popts"
	1896	fi
[1]	1897	done
	1898	fi
	1899
	1900	else
	1901
	1902
	1903	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1904	if [[ $do_remote = false ]]
	1905	then
	1906	if [[ ! -f $executable ]]
	1907	then
	1908	printf "\n +++ executable file: $executable"
	1909	printf "\n does not exist"
	1910	locat=executable; exit
	1911	fi
	1912	fi
	1913	fi
	1914
	1915
	1916	# JOBMODUS FESTSTELLEN
	1917	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
	1918	then
	1919	jobmo=BATCH
	1920	else
	1921	jobmo=INTERACTIVE
	1922	fi
	1923
	1924
	1925	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1926	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1927	if [[ "$compiler_name" = "" ]]
	1928	then
[82]	1929
[220]	1930	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1931	locat=compiler_name; exit
	1932
[1]	1933	fi
	1934
	1935
[251]	1936	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	1937	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	1938
	1939
	1940
	1941	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	1942	kennung=$RANDOM
	1943	if [[ "$tmp_user_catalog" = "" ]]
	1944	then
[312]	1945	if [[ $localhost = ibmh ]]
[1]	1946	then
[312]	1947	tmp_user_catalog=$SCRATCH
[1]	1948	elif [[ $localhost = nech ]]
	1949	then
	1950	tmp_user_catalog=$WRKSHR
	1951	else
	1952	tmp_user_catalog=/tmp
	1953	fi
	1954	fi
	1955	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	1956
	1957
	1958	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	1959	# BESTIMMEN
	1960	if [[ "$tmp_data_catalog" = "" ]]
	1961	then
[312]	1962	if [[ $localhost = ibmb ]]
[1]	1963	then
	1964	tmp_data_catalog=$WORK/mrun_restart_data
	1965	elif [[ $localhost = nech ]]
	1966	then
	1967	tmp_data_catalog=$WRKSHR/mrun_restart_data
	1968	else
	1969	tmp_data_catalog=/tmp/mrun_restart_data
	1970	fi
	1971	fi
	1972
	1973
	1974	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	1975	# ERSETZEN
	1976	if [[ $do_remote = false && $do_compile = true ]]
	1977	then
	1978	eval fopts=\"$fopts\"
	1979	eval lopts=\"$lopts\"
	1980	fi
	1981
	1982
	1983
	1984	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	1985	fopts="$fopts $netcdf_inc $dvr_inc"
	1986	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	1987	ROPTS="$ropts"
[367]	1988	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lck ) && -n $numprocs ]]
[1]	1989	then
	1990	XOPT="-X $numprocs"
	1991	fi
	1992
	1993
	1994
	1995	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	1996	# GRAMM BENOETIGT
	1997	done=false
	1998	while [[ $done = false ]]
	1999	do
	2000	cputime=$cpumax
	2001	if (( $cputime == 0 ))
	2002	then
[246]	2003	if [[ $do_batch = true ]]
	2004	then
	2005	printf "\n +++ cpu-time is undefined"
	2006	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	2007	printf "\n >>> "
	2008	read cputime 1>/dev/null 2>&1
	2009	else
	2010	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	2011	fi
[1]	2012	else
	2013	done=true
	2014	fi
	2015	cpumax=$cputime
	2016	done
	2017
	2018	(( minuten = cputime / 60 ))
	2019	(( sekunden = cputime - minuten * 60 ))
	2020
	2021
	2022	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	2023	if [[ $do_batch = true ]]
	2024	then
	2025	done=false
	2026	while [[ $done = false ]]
	2027	do
	2028	if (( memory == 0 ))
	2029	then
	2030	printf "\n +++ memory demand is undefined"
	2031	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	2032	printf "\n >>> "
	2033	read memory 1>/dev/null 2>&1
	2034	else
	2035	done=true
	2036	fi
	2037	done
	2038	fi
	2039
	2040
	2041	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	2042	if [[ $do_remote = true && -z $remote_username ]]
	2043	then
	2044	while [[ -z $remote_username ]]
	2045	do
	2046	printf "\n +++ username on remote host \"$host\" is undefined"
	2047	printf "\n >>> Please type username:"
	2048	printf "\n >>> "
	2049	read remote_username
	2050	done
	2051	mc="$mc -u$remote_username"
	2052	fi
	2053
[221]	2054
	2055	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2056	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2057	then
	2058	[[ "$mpilib" = "" ]] && export mpilib=mpt
	2059	fi
	2060
	2061
	2062
[1]	2063	###########################################################################
	2064	# HEADER-AUSGABE
	2065	###########################################################################
	2066
	2067
	2068	calltime=$(date)
	2069	printf "\n"
	2070	# [[ $silent = false ]] && clear
	2071	printf "#--------------------------------------------------------------# \n"
	2072	printf "\| $version$calltime \| \n"
	2073	printf "\| \| \n"
	2074	spalte1="called on:"; spalte2=$localhost_realname
	2075	printf "\| $spalte1$spalte2 \| \n"
	2076	if [[ $local_compile = false ]]
	2077	then
	2078	if [[ $do_remote = true ]]
	2079	then
	2080	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2081	else
	2082	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2083	fi
	2084	else
	2085	spalte1="compiling test only!"; spalte2=""
	2086	fi
	2087	printf "\| $spalte1$spalte2 \| \n"
	2088	if [[ -n $numprocs ]]
	2089	then
	2090	spalte1="number of PEs:"; spalte2=$numprocs
	2091	printf "\| $spalte1$spalte2 \| \n"
	2092	fi
	2093	if [[ -n $tasks_per_node ]]
	2094	then
	2095	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	2096	printf "\| $spalte1$spalte2 \| \n"
	2097	fi
	2098	if [[ $threads_per_task != 1 ]]
	2099	then
	2100	spalte1="threads per task:"; spalte2="$threads_per_task"
	2101	printf "\| $spalte1$spalte2 \| \n"
	2102	fi
	2103	printf "\| \| \n"
	2104	if [[ $do_compile = true ]]
	2105	then
[82]	2106	spalte1=cpp-directives:; spalte2=$cpp_options
[1]	2107	printf "\| $spalte1$spalte2 \| \n"
[82]	2108	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2109	while [[ "$zeile" != "" ]]
	2110	do
	2111	spalte1=""
	2112	spalte2=$zeile
	2113	printf "\| $spalte1$spalte2 \| \n"
	2114	zeile=$(echo "$zeile" \| cut -c41-)
	2115	done
	2116
[82]	2117	spalte1=compiler-options:; spalte2="$fopts"
[1]	2118	printf "\| $spalte1$spalte2 \| \n"
[82]	2119	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2120	while [[ "$zeile" != "" ]]
	2121	do
	2122	spalte1=""
	2123	spalte2=$zeile
	2124	printf "\| $spalte1$spalte2 \| \n"
	2125	zeile=$(echo "$zeile" \| cut -c41-)
	2126	done
	2127
[82]	2128	spalte1=linker-options:; spalte2=$lopts
[1]	2129	printf "\| $spalte1$spalte2 \| \n"
[82]	2130	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2131	while [[ "$zeile" != "" ]]
	2132	do
	2133	spalte1=""
	2134	spalte2=$zeile
	2135	printf "\| $spalte1$spalte2 \| \n"
	2136	zeile=$(echo "$zeile" \| cut -c41-)
	2137	done
	2138
	2139	spalte1="main program":; spalte2=$mainprog
	2140	printf "\| $spalte1$spalte2 \| \n"
	2141	else
	2142	spalte1=executable:; spalte2=$executable
	2143	printf "\| $spalte1$spalte2 \| \n"
	2144	fi
	2145	printf "\| \| \n"
	2146	spalte1="base name of files":; spalte2=$fname
	2147	printf "\| $spalte1$spalte2 \| \n"
	2148	if [[ $fname != $afname ]]
	2149	then
	2150	spalte1="base name of input files":; spalte2=$afname
	2151	printf "\| $spalte1$spalte2 \| \n"
	2152	fi
	2153	spalte1="INPUT control list":; spalte2=$input_list
	2154	printf "\| $spalte1$spalte2 \| \n"
	2155	spalte1="OUTPUT control list":; spalte2=$output_list
	2156	printf "\| $spalte1$spalte2 \| \n"
	2157
	2158	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2159	then
	2160	spalte1="memory demand / PE":; spalte2="$memory MB"
	2161	printf "\| $spalte1$spalte2 \| \n"
	2162	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2163	printf "\| $spalte1$spalte2 \| \n"
	2164	fi
	2165
	2166	if [[ $do_compile = true ]]
	2167	then
	2168	printf "\| \| \n"
	2169	printf "\| Files to be compiled: \| \n"
	2170	zeile=$source_list
	2171	while [[ "$zeile" != "" ]]
	2172	do
	2173	spalte3=$zeile
	2174	printf "\| $spalte3 \| \n"
	2175	zeile=$(echo "$zeile" \| cut -c61-)
	2176	done
	2177	fi
	2178	printf "#--------------------------------------------------------------#"
	2179
	2180
	2181
	2182	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2183	if [[ $do_trace = true ]]
	2184	then
	2185	(( i = 0 ))
	2186	while (( i < iin ))
	2187	do
	2188	(( i = i + 1 ))
	2189	if (( i == 1 ))
	2190	then
	2191	printf "\n\n >>> INPUT-file assignments:\n"
	2192	fi
	2193	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2194	done
	2195	(( i = 0 ))
	2196	while (( i < iout ))
	2197	do
	2198	(( i = i + 1 ))
	2199	if (( i == 1 ))
	2200	then
	2201	printf "\n\n >>> OUTPUT-file assignments:\n"
	2202	fi
	2203	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2204	done
	2205	(( i = 0 ))
	2206	while (( i < iic ))
	2207	do
	2208	(( i = i + 1 ))
	2209	if (( i == 1 ))
	2210	then
	2211	printf "\n\n >>> INPUT-commands:\n"
	2212	fi
	2213	printf "\n ${in_command[$i]}"
	2214	done
	2215	(( i = 0 ))
	2216	while (( i < ioc ))
	2217	do
	2218	(( i = i + 1 ))
	2219	if (( i == 1 ))
	2220	then
	2221	printf "\n\n >>> OUTPUT-commands:\n"
	2222	fi
	2223	printf "\n ${out_command[$i]}"
	2224	done
	2225	fi
	2226
	2227
	2228	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2229	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2230	then
	2231	antwort=dummy
	2232	printf "\n\n"
	2233	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2234	do
	2235	printf " >>> everything o.k. (y/n) ? "
	2236	read antwort
	2237	done
	2238	if [[ $antwort = n \|\| $antwort = N ]]
	2239	then
	2240	locat=user_abort; (( iec = 0 )); exit
	2241	fi
	2242	if [[ $do_batch = true ]]
	2243	then
	2244	printf " >>> batch-job will be created and submitted"
	2245	else
	2246	if [[ $local_compile = false ]]
	2247	then
	2248	printf " >>> MRUN will now continue to execute on this machine"
	2249	else
	2250	printf " >>> a test compilation will now be carried out on this machine"
	2251	fi
	2252	fi
	2253	fi
	2254
	2255
	2256
	2257
	2258	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2259	# CHENDE AKTIONEN DURCHGEFUEHRT
	2260	if [[ $do_batch = false ]]
	2261	then
	2262
	2263
	2264	# TEMPORAEREN KATALOG ERZEUGEN
	2265	mkdir -p $TEMPDIR
	2266	chmod go+rx $TEMPDIR
	2267	tmpcreate=true
	2268
	2269
	2270	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2271	# TEMPORAERES VERZEICHNIS KOPIEREN
	2272	if [[ $do_compile = true ]]
	2273	then
	2274
	2275	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2276	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2277	if [[ $localhost = nech ]]
	2278	then
	2279	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2280	if mkdir -p $TEMPDIR_COMPILE
	2281	then
	2282	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2283	printf "\n is generated as temporary directory for cross compiling\n"
	2284	else
	2285	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2286	printf "\n needed for cross compilation failed"
	2287	locat=compile
	2288	exit
	2289	fi
	2290	else
	2291	TEMPDIR_COMPILE=$TEMPDIR
	2292	fi
	2293
	2294
[82]	2295	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2296	line=""
	2297	grep "%depository_path" $config_file > tmp_mrun
	2298	while read line
	2299	do
	2300	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2301	then
	2302	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2303	then
[82]	2304	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2305	fi
[82]	2306	fi
	2307	done < tmp_mrun
[1]	2308
[82]	2309	line=""
	2310	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2311	while read line
	2312	do
	2313	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2314	then
[211]	2315	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2316	then
	2317	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2318	fi
[1]	2319	fi
[82]	2320	done < tmp_mrun
[1]	2321
[82]	2322	if [[ "$local_depository_path" = "" ]]
	2323	then
	2324	if [[ "$global_depository_path" != "" ]]
[1]	2325	then
[82]	2326	local_depository_path=$global_depository_path
[1]	2327	else
[82]	2328	printf "\n\n +++ no depository path found in configuration file"
	2329	printf "\n for local host \"$localhost\" "
	2330	printf "\n please set \"\%depository_path\" in configuration file\n"
	2331	locat=config_file; exit
[1]	2332	fi
[82]	2333	fi
	2334	eval local_depository_path=$local_depository_path
[215]	2335	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2336	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2337
[215]	2338
[82]	2339	basename=`print $mainprog \| cut -f1 -d"."`
	2340	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2341	if [[ ! -f $make_depository ]]
	2342	then
	2343	printf "\n"
	2344	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2345	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2346	else
	2347	cp $make_depository $TEMPDIR_COMPILE
[1]	2348	cd $TEMPDIR_COMPILE
[82]	2349	tar -xf $make_depository > /dev/null 2>&1
[1]	2350	cd - > /dev/null
	2351	fi
[82]	2352
	2353	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2354
	2355	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
	2356	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
	2357	# MAKEFILE EINTRAGEN
[211]	2358	# cd $TEMPDIR_COMPILE
	2359	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
	2360	# if [[ "$interface_file" != "" ]]
	2361	# then
	2362	# interface_file=`echo $interface_file \| cut -d"." -f1`
	2363	# mv Makefile Makefile_old
	2364	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
	2365	# fi
	2366	# cd - > /dev/null
[1]	2367	else
	2368	cp $executable ${TEMPDIR}/a.out
	2369	fi
	2370
	2371
	2372	# WECHSEL IN TEMPORAEREN KATALOG
	2373	cd $TEMPDIR
	2374	printf "\n *** changed to temporary directory: $TEMPDIR"
	2375
	2376
	2377	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2378	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2379	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2380	# ERMITTELN
	2381	(( i = 0 ))
	2382	while (( i < iout ))
	2383	do
	2384	(( i = i + 1 ))
	2385	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2386	then
	2387	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2388	else
	2389	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2390	fi
	2391	done
	2392
	2393
	2394	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2395	if [[ $do_compile = true ]]
	2396	then
	2397
	2398
	2399	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2400	printf "\n\n\n *** compilation starts \n$striche\n"
	2401	printf " *** compilation with make using following options:\n"
[211]	2402	printf " make depository: $make_depository"
[82]	2403	printf " compilername: $compiler_name\n"
	2404	printf " options: $fopts\n"
	2405	printf " preprocessor-directives: $cpp_options \n"
	2406	printf " linker-options: $lopts \n"
	2407	printf " source code files: $source_list \n"
	2408
	2409	if [[ $localhost = nech ]]
[1]	2410	then
[82]	2411	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2412	cp $TEMPDIR_COMPILE/a.out .
	2413	[[ $? != 0 ]] && compile_error=true
	2414	rm -rf $TEMPDIR_COMPILE
[312]	2415	elif [[ $localhost = ibmh ]]
	2416	then
[325]	2417	printf " compiler is called via ssh on \"plogin1\" \n"
	2418	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[312]	2419	[[ ! -f a.out ]] && compile_error=true
	2420	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[197]	2421	elif [[ $localhost = lcsgib ]]
	2422	then
[221]	2423	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
[291]	2424	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2425	[[ ! -f a.out ]] && compile_error=true
	2426	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2427	elif [[ $localhost = lcsgih ]]
	2428	then
[221]	2429	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
[366]	2430	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2431	[[ ! -f a.out ]] && compile_error=true
	2432	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2433	else
[118]	2434	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
[82]	2435	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	2436	fi
[1]	2437
	2438	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2439	then
	2440	printf "\n +++ error occured while compiling or linking"
	2441	locat=compile
[181]	2442
[182]	2443	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2444	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2445	# then
[181]	2446	exit
[197]	2447	# else
	2448	# locat=normal
	2449	# fi
[1]	2450	else
	2451	printf "$striche\n *** compilation finished \n"
	2452	fi
	2453	fi
	2454
	2455
	2456	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2457	if [[ $local_compile = true ]]
	2458	then
	2459	cd $HOME
	2460	rm -rf $TEMPDIR
	2461	locat=local_compile; exit
	2462	fi
	2463
	2464
	2465	# BEREITSTELLEN DER INPUT-DATEIEN
	2466	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2467	(( i = 0 ))
	2468	while (( i < iin ))
	2469	do
	2470	(( i = i + 1 ))
	2471	if (( i == 1 ))
	2472	then
	2473	printf "\n\n *** providing INPUT-files:\n$striche"
	2474	fi
	2475
	2476
	2477	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2478	if [[ "${transin[$i]}" = unavailable ]]
	2479	then
	2480	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2481	then
	2482	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2483	printf "\n is not available!"
	2484	else
	2485	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2486	printf "\n is not available!"
	2487	fi
	2488	continue
	2489	fi
	2490
	2491	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2492	files_for_pes=false; datentyp=file
	2493	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2494	then
	2495	files_for_pes=true; datentyp=directory
	2496	actionin[$i]=""
	2497	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2498	then
	2499	actionin[$i]=""
	2500	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2501	then
	2502	files_for_pes=true; datentyp=directory
	2503	actionin[$i]="ar"
	2504	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2505	then
	2506	actionin[$i]="ar"
	2507	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2508	then
	2509	files_for_pes=true; datentyp=directory
	2510	actionin[$i]="fl"
	2511	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2512	then
	2513	actionin[$i]="fl"
	2514	fi
	2515
	2516	if [[ $files_for_pes = true ]]
	2517	then
	2518	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2519	else
	2520	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2521	fi
	2522
	2523	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2524	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2525	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2526	# SERVER ZU HOLEN
	2527	if [[ "${actionin[$i]}" = fl ]]
	2528	then
	2529	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2530	if [[ $files_for_pes = false ]]
	2531	then
	2532	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2533	then
	2534	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2535	got_tmp[$i]=true
	2536	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2537	then
	2538	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2539	printf "\n *** trying to use backup copy in \"$WORK\" "
	2540	cp $WORK/${frelin[$i]} ${localin[$i]}
	2541	else
	2542	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2543	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2544	printf "\n *** trying to get copy from archive"
	2545	actionin[$i]=ar
	2546	fi
	2547	else
	2548	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2549	then
	2550	mkdir ${localin[$i]}
[149]	2551	cd $tmp_data_catalog/${frelin[$i]}
	2552	for file in $(ls *)
	2553	do
	2554	ln $file $TEMPDIR/${localin[$i]}
	2555	done
	2556	cd $TEMPDIR
[1]	2557	got_tmp[$i]=true
	2558	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2559	then
	2560	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2561	printf "\n *** trying to use backup copy in \"$WORK\" "
	2562	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2563	else
	2564	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2565	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2566	printf "\n *** trying to get copy from archive"
	2567	actionin[$i]=ar
	2568	fi
	2569	fi
	2570	fi
	2571
	2572
	2573	# DATEI LIEGT AUF ARCHIV-SERVER
	2574	if [[ "${actionin[$i]}" = ar ]]
	2575	then
	2576
	2577	if [[ $files_for_pes = false ]]
	2578	then
	2579	printf "\n file will be restored from archive-system ($archive_system)!"
	2580	else
	2581	printf "\n directory will be restored from archive-system ($archive_system)!"
	2582	fi
	2583
	2584	file_restored=false
	2585
	2586	if [[ $archive_system = asterix ]]
	2587	then
	2588	do_stagein=true
	2589	(( stagein_anz = 0 ))
	2590	while [[ $do_stagein = true ]]
	2591	do
	2592	if [[ $files_for_pes = false ]]
	2593	then
	2594	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2595	else
	2596	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2597	fi
	2598	cat STAGEIN_OUTPUT
	2599	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2600	then
	2601	file_restored=true
	2602	do_stagein=false
	2603	else
	2604	(( stagein_anz = stagein_anz + 1 ))
	2605	if (( stagein_anz == 10 ))
	2606	then
	2607	printf "\n +++ stagein stoped after 10 tries"
	2608	locat=stage
	2609	exit
	2610	fi
	2611	printf "\n +++ restoring from archive failed, trying again:"
	2612	sleep 900
	2613	fi
	2614	done
	2615	elif [[ $archive_system = DMF ]]
	2616	then
	2617	if [[ $files_for_pes = false ]]
	2618	then
	2619	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	2620	locat=DMF
	2621	exit
	2622	else
	2623	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	2624	cp -r $ARCHIVE/${frelin[$i]} $PWD
	2625	file_restored=true
	2626	fi
	2627	elif [[ $archive_system = tivoli ]]
	2628	then
	2629	if [[ $files_for_pes = false ]]
	2630	then
	2631	if [[ $localhost = ibmh ]]
	2632	then
	2633	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
	2634	else
	2635	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
	2636	fi
	2637	else
	2638	(( inode = 0 ))
	2639	while (( inode < nodes ))
	2640	do
	2641	if [[ $localhost = ibmh ]]
	2642	then
	2643	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
	2644	else
	2645	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
	2646	fi
	2647	(( inode = inode + 1 ))
	2648	done
	2649	fi
	2650	file_restored=true
	2651	elif [[ $archive_system = ut ]]
	2652	then
	2653	if [[ $files_for_pes = false ]]
	2654	then
	2655	cp $UT/${frelin[$i]} .
	2656	else
	2657	(( inode = 0 ))
	2658	while (( inode < nodes ))
	2659	do
	2660	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	2661	(( inode = inode + 1 ))
	2662	done
	2663	fi
	2664	file_restored=true
	2665	else
	2666	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	2667	locat=rearchive
	2668	exit
	2669	fi
	2670
	2671	if [[ $file_restored = true ]]
	2672	then
	2673
	2674	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	2675	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	2676	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	2677	if [[ $files_for_pes = false ]]
	2678	then
	2679	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	2680	else
	2681	mkdir $tmp_data_catalog/${frelin[$i]}
	2682	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	2683	fi
	2684	got_tmp[$i]=true
	2685
	2686	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	2687	mv ${frelin[$i]} ${localin[$i]}
	2688
	2689	fi
	2690	fi
	2691
	2692
	2693	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	2694	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	2695	then
	2696
	2697	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	2698	then
	2699
	2700	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	2701	printf "\n file will be provided for $numprocs processors"
	2702	mkdir ${localin[$i]}
	2703	ival=$numprocs
	2704	(( ii = 0 ))
	2705	while (( ii <= ival-1 ))
	2706	do
	2707	if (( ii < 10 ))
	2708	then
	2709	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	2710	elif (( ii < 100 ))
	2711	then
	2712	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	2713	elif (( ii < 1000 ))
	2714	then
	2715	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	2716	else
	2717	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	2718	fi
	2719	(( ii = ii + 1 ))
	2720	done
	2721
	2722	else
	2723
	2724	if [[ $files_for_pes = true ]]
	2725	then
	2726
	2727	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	2728	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	2729	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	2730	# PER MOVE UMBENANNT WERDEN
	2731	printf "\n providing $numprocs files for the respective processors"
	2732	mkdir ${localin[$i]}
[183]	2733	if [[ $link_local_input = true ]]
	2734	then
	2735	printf " using ln -f\n"
	2736	cd ${absnamein[$i]}
	2737	for file in $(ls *)
	2738	do
	2739	ln -f $file ${localin[$i]}
	2740	done
	2741	cd $TEMPDIR
	2742	fi
	2743	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	2744	if [[ ! -f "${localin[$i]}/_0000" ]]
	2745	then
	2746	if [[ $link_local_input = true ]]
	2747	then
	2748	printf " ln failed for .../_0000, using cp...\n"
	2749	fi
	2750	cp -r ${absnamein[$i]}/* ${localin[$i]}
	2751	fi
[1]	2752
	2753	else
	2754	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	2755	if [[ $link_local_input = true ]]
	2756	then
	2757	printf " using ln -f\n"
	2758	ln -f ${absnamein[$i]} ${localin[$i]}
	2759	fi
	2760	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	2761	if [[ ! -f "${localin[$i]}" ]]
	2762	then
	2763	if [[ $link_local_input = true ]]
	2764	then
	2765	printf " ln failed, using cp...\n"
	2766	fi
	2767	cp ${absnamein[$i]} ${localin[$i]}
	2768	fi
[1]	2769	fi
	2770	fi
	2771	fi
	2772
	2773	done
	2774	if (( i != 0 ))
	2775	then
	2776	printf "\n$striche\n *** all INPUT-files provided \n"
	2777	fi
	2778
	2779
	2780	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	2781	(( i = 0 ))
	2782	while (( i < iic ))
	2783	do
	2784	(( i = i + 1 ))
	2785	if (( i == 1 ))
	2786	then
	2787	printf "\n\n *** execution of INPUT-commands:\n$striche"
	2788	fi
	2789	printf "\n >>> ${in_command[$i]}"
	2790	eval ${in_command[$i]}
	2791	if (( i == iic ))
	2792	then
	2793	printf "\n$striche\n"
	2794	fi
	2795	done
	2796
	2797
	2798	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	2799	cpurest=${cpumax}.
	2800
	2801
[260]	2802	# START DVR STREAMING SERVER
	2803	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	2804	then
	2805	if [[ "$dvr_server" != "" ]]
	2806	then
	2807
	2808	printf "\n\n *** preparing the dvr streaming server configuration file"
	2809
	2810	# Check, if a dvr server is already running
	2811	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	2812	if [[ "$running_dvrserver_id" != "" ]]
	2813	then
	2814
[261]	2815	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	2816	printf "\n This server is used instead starting a new one!"
[261]	2817	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	2818
	2819	else
	2820
	2821	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	2822	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	2823	then
	2824	cp ${PALM_BIN}/.dvrserver.config .
	2825
	2826	# Entering the BASEDIR, UID and GID into this file
	2827	user_id=`id -u`
	2828	group_id=`id -g`
	2829	# & is needed as seperator, because TEMPDIR contains /
	2830	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	2831	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	2832	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	2833	mv .dvrserver.3 .dvrserver.config
	2834	rm .dvrserver.1 .dvrserver.2
	2835
	2836	# Start dvr server in background, get his id and print on terminal
	2837	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	2838	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	2839	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	2840	local_dvrserver_running=.TRUE.
	2841	else
	2842	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	2843	printf "\n \"$PALM_BIN\" "
	2844	locat=dvr
	2845	exit
	2846	fi
	2847
	2848	fi
	2849
	2850	else
	2851	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	2852	fi
	2853	fi
	2854
	2855
	2856	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	2857	# LESEN VON PALM)
	2858	cat > ENVPAR << %%END%%
	2859	&envpar run_identifier = '$fname', host = '$localhost',
	2860	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2861	maximum_cpu_time_allowed = ${cpumax}.,
	2862	revision = '$global_revision',
	2863	local_dvrserver_running = $local_dvrserver_running /
	2864
	2865	%%END%%
	2866
	2867
[1]	2868	# PROGRAMMSTART
	2869	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	2870	PATH=$PATH:$TEMPDIR
	2871
[359]	2872	# MPI debug option (argument checking, slows down execution due to increased latency)
	2873	if [[ "$mpi_debug" = true ]]
	2874	then
	2875	export MPI_CHECK_ARGS=1
	2876	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	2877	fi
	2878
[1]	2879	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	2880	then
	2881	if [[ "$ENVIRONMENT" = BATCH ]]
	2882	then
[211]	2883	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	2884	then
	2885	printf "\n +++ debug is allowed in interactive mode only"
	2886	locat=debug
	2887	exit
	2888	fi
[1]	2889	fi
[5]	2890	if [[ $localhost = decalpha ]]
[1]	2891	then
	2892	dxladebug a.out
	2893	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	2894	then
	2895
	2896	# SETUP THE IBM MPI ENVIRONMENT
	2897	export MP_SHARED_MEMORY=yes
	2898	export AIXTHREADS_SCOPE=S
	2899	export OMP_NUM_THREADS=$threads_per_task
	2900	export AUTHSTATE=files
	2901	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2902
	2903	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	2904	export MP_ADAPTER_USE=shared
	2905	export MP_CPU_USE=multiple
	2906	export MP_TIMEOUT=1200
	2907
	2908	unset MP_TASK_AFFINITY
	2909
	2910	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	2911	#(( ii = 1 ))
	2912	#while (( ii <= $numprocs ))
	2913	#do
	2914	# echo $localhost_realname >> hostfile
	2915	# (( ii = ii + 1 ))
	2916	#done
	2917	#export MP_HOSTFILE=hostfile
	2918
	2919	if [[ "$LOADLBATCH" = yes ]]
	2920	then
	2921	totalview poe a.out $ROPTS
	2922	else
	2923	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2924	export TVDSVRLAUNCHCMD=ssh
	2925	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2926	fi
[211]	2927	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	2928	then
	2929	# CURRENTLY NO DEBUGGER ON LCSGI
	2930	if [[ $run_coupled_model = true ]]
	2931	then
	2932	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	2933	locat=debug
	2934	exit
[223]	2935	else
	2936	echo "no_coupling" > runfile_atmos
[211]	2937	fi
	2938	(( ii = $numprocs / $threads_per_task ))
	2939	export OMP_NUM_THREADS=$threads_per_task
	2940	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	2941	if [[ $threads_per_task != 1 ]]
	2942	then
	2943	printf "\n threads per task: $threads_per_task"
	2944	fi
	2945	printf "\n\n"
[223]	2946	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	2947	then
	2948	# export MPI_LAUNCH_TIMEOUT=360
	2949	if [[ "$totalview" = true ]]
	2950	then
	2951	printf "\n running totalview debugger"
	2952	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
	2953	else
	2954	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	2955	fi
	2956	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	2957	then
	2958	# ulimit -s 300000 # A too large stack size causes problems
	2959	# export MV2_NUM_PORTS=2
	2960	# export MV2_CPU_MAPPING=0:1:2:3
[362]	2961	if [[ "$totalview" = true ]]
	2962	then
	2963	printf "\n running totalview debugger"
	2964	mpiexec -tv ./a.out $ROPTS < runfile_atmos
	2965	else
	2966	mpiexec ./a.out $ROPTS < runfile_atmos
	2967	fi
[223]	2968	fi
[1]	2969	else
	2970	printf "\n +++ no debug available on \"$localhost\" "
	2971	printf "\n or not implemented in mrun so far"
	2972	locat=debug
	2973	exit
	2974	fi
	2975	else
	2976	if [[ -n $numprocs ]]
	2977	then
	2978	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	2979	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	2980	then
	2981	# SETUP THE IBM MPI ENVIRONMENT
[312]	2982	if [[ $host != ibmh ]]
	2983	then
	2984	export MP_SHARED_MEMORY=yes
	2985	export AIXTHREAD_SCOPE=S
	2986	export OMP_NUM_THREADS=$threads_per_task
	2987	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	2988	export AUTHSTATE=files
	2989	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2990	# export MP_PRINTENV=yes
[1]	2991
[312]	2992	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	2993	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	2994	export MP_WAIT_MODE=poll
	2995	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	2996	fi
[1]	2997	if [[ "$LOADLBATCH" = yes ]]
	2998	then
	2999	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	3000	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3001	then
[102]	3002	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3003	else
[343]	3004	if [[ $run_coupled_model = false ]]
	3005	then
	3006	if [[ "$ocean_file_appendix" = true ]]
	3007	then
	3008	echo "precursor_ocean" > runfile_atmos
	3009	else
	3010	echo "precursor_atmos" > runfile_atmos
	3011	fi
	3012	else
	3013	(( iia = $numprocs_atmos / $threads_per_task ))
	3014	(( iio = $numprocs_ocean / $threads_per_task ))
	3015	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3016	printf "\n using $coupled_mode coupling"
	3017	printf "\n\n"
	3018	echo "coupled_run $iia $iio" > runfile_atmos
	3019	fi
	3020	poe ./a.out $ROPTS < runfile_atmos
[1]	3021	fi
	3022	else
	3023	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
	3024	then
[102]	3025	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[1]	3026	elif [[ $localhost = ibmy ]]
	3027	then
	3028	if [[ -f $hostfile ]]
	3029	then
	3030	cp $hostfile hostfile
	3031	else
	3032	(( ii = 1 ))
	3033	while (( ii <= $numprocs ))
	3034	do
	3035	echo $localhost_realname >> hostfile
	3036	(( ii = ii + 1 ))
	3037	done
	3038	fi
	3039	export MP_HOSTFILE=hostfile
[331]	3040	if [[ $run_coupled_model = false ]]
	3041	then
	3042	if [[ "$ocean_file_appendix" = true ]]
	3043	then
	3044	echo "precursor_ocean" > runfile_atmos
	3045	else
	3046	echo "precursor_atmos" > runfile_atmos
	3047	fi
	3048	else
	3049	(( iia = $numprocs_atmos / $threads_per_task ))
	3050	(( iio = $numprocs_ocean / $threads_per_task ))
	3051	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3052	printf "\n using $coupled_mode coupling"
	3053	printf "\n\n"
	3054	echo "coupled_run $iia $iio" > runfile_atmos
	3055	fi
	3056	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3057
[1]	3058	else
	3059	if [[ "$host_file" = "" ]]
	3060	then
	3061	printf "\n +++ no hostfile given in configuration file"
	3062	locat=config_file
	3063	exit
	3064	else
	3065	eval host_file=$host_file
	3066	fi
	3067	export MP_HOSTFILE=$host_file
[102]	3068	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3069	fi
	3070	fi
[251]	3071	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3072	then
	3073	(( ii = nodes ))
	3074	if [[ $ii = 1 ]]
	3075	then
	3076	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3077	export MPIPROGINF=YES
[61]	3078	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3079	echo "*** execution on single node with mpirun"
[102]	3080	mpirun -np $numprocs ./a.out $ROPTS
[1]	3081	else
	3082	(( i = 0 ))
	3083	while (( i < ii ))
	3084	do
	3085	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3086	(( i = i + 1 ))
	3087	done
	3088
	3089	echo "#!/bin/sh" > mpi_exec_shell
	3090	echo " " >> mpi_exec_shell
	3091	echo "set -u" >> mpi_exec_shell
	3092	echo "F_ERRCNT=0" >> mpi_exec_shell
	3093	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3094	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3095	echo "cpurest=$cpurest" >> mpi_exec_shell
	3096	echo "fname=$fname" >> mpi_exec_shell
	3097	echo "localhost=$localhost" >> mpi_exec_shell
	3098	echo "return_addres=$return_addres" >> mpi_exec_shell
	3099	echo "return_username=$return_username" >> mpi_exec_shell
	3100	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3101	echo "write_binary=$write_binary" >> mpi_exec_shell
	3102	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3103	echo " " >> mpi_exec_shell
	3104	echo "export F_ERRCNT" >> mpi_exec_shell
	3105	echo "export MPIPROGINV" >> mpi_exec_shell
	3106	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3107	echo "export cpurest" >> mpi_exec_shell
	3108	echo "export fname" >> mpi_exec_shell
	3109	echo "export localhost" >> mpi_exec_shell
	3110	echo "export return_addres" >> mpi_exec_shell
	3111	echo "export return_username" >> mpi_exec_shell
	3112	echo "export tasks_per_node" >> mpi_exec_shell
	3113	echo "export write_binary" >> mpi_exec_shell
	3114	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3115	echo " " >> mpi_exec_shell
[102]	3116	echo "exec ./a.out" >> mpi_exec_shell
[1]	3117
	3118	chmod u+x mpi_exec_shell
	3119	export MPIPROGINF=YES
	3120	mpirun -f multinode_config &
	3121	wait
	3122
	3123	fi
[82]	3124	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
[1]	3125	then
	3126
	3127	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3128	# DOES NOT EXIST
[179]	3129	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	3130	then
[179]	3131	if [[ -f $hostfile ]]
	3132	then
	3133	cp $hostfile hostfile
	3134	else
	3135	(( ii = 1 ))
	3136	while (( ii <= $numprocs / $threads_per_task ))
	3137	do
	3138	echo $localhost_realname >> hostfile
	3139	(( ii = ii + 1 ))
	3140	done
	3141	fi
	3142	eval zeile=\"`head -n $ii hostfile`\"
	3143	printf "\n *** running on: $zeile"
[1]	3144	fi
[179]	3145
[1]	3146	(( ii = $numprocs / $threads_per_task ))
	3147	export OMP_NUM_THREADS=$threads_per_task
[246]	3148	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3149	if [[ $threads_per_task != 1 ]]
	3150	then
	3151	printf "\n threads per task: $threads_per_task"
	3152	fi
[102]	3153	if [[ $run_coupled_model = false ]]
[1]	3154	then
[291]	3155	if [[ "$ocean_file_appendix" = true ]]
	3156	then
	3157	echo "precursor_ocean" > runfile_atmos
	3158	else
	3159	echo "precursor_atmos" > runfile_atmos
	3160	fi
[102]	3161	printf "\n\n"
[179]	3162	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3163	then
[221]	3164	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3165	then
	3166	# export MPI_LAUNCH_TIMEOUT=360
[366]	3167	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
	3168	# export MPI_DSM_DISTRIBUTE=1
	3169	# MPI_DSM_CPULIST: pin MPI processes to cores
	3170	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
	3171	# MPI_IB_RAILS: use both IB rails on ICE2
	3172	export MPI_BUFS_PER_HOST=512
	3173	export MPI_IB_RAILS=2
[369]	3174	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
	3175	export MPI_CONNECTIONS_THRESHOLD=8192
[223]	3176	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
[221]	3177	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3178	then
	3179	# ulimit -s 300000 # A too large stack size causes problems
	3180	# export MV2_NUM_PORTS=2
	3181	# export MV2_CPU_MAPPING=0:1:2:3
[325]	3182	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
[221]	3183	fi
[179]	3184	elif [[ $host = lcxt4 ]]
	3185	then
[223]	3186	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[164]	3187	else
[223]	3188	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3189	fi
[1]	3190	else
[164]	3191
[206]	3192	# currently there is no full MPI-2 support on ICE and XT4
	3193	(( iia = $numprocs_atmos / $threads_per_task ))
	3194	(( iio = $numprocs_ocean / $threads_per_task ))
	3195	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3196	printf "\n using $coupled_mode coupling"
[102]	3197	printf "\n\n"
[164]	3198
[206]	3199	if [[ $coupled_mode = "mpi2" ]]
[164]	3200	then
[206]	3201	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3202	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3203	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3204	then
[197]	3205
[221]	3206	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3207	then
	3208	# export MPI_LAUNCH_TIMEOUT=360
	3209	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3210	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3211	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3212	then
	3213	# ulimit -s 300000 # A too large stack size causes problems
	3214	# export MV2_NUM_PORTS=2
	3215	# export MV2_CPU_MAPPING=0:1:2:3
	3216	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3217	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3218	fi
[197]	3219
[206]	3220	elif [[ $host = lcxt4 ]]
	3221	then
[197]	3222
[206]	3223	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3224	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3225
	3226	else
	3227	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3228	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3229	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3230	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3231	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3232	fi
	3233	wait
	3234
[164]	3235	else
	3236
[206]	3237	echo "coupled_run $iia $iio" > runfile_atmos
	3238	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3239	then
	3240
[221]	3241	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3242	then
	3243	# export MPI_LAUNCH_TIMEOUT=360
	3244	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3245	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3246	then
	3247	# ulimit -s 300000 # A too large stack size causes problems
	3248	# export MV2_NUM_PORTS=2
	3249	# export MV2_CPU_MAPPING=0:1:2:3
	3250	mpiexec ./a.out $ROPTS < runfile_atmos
	3251	fi
[206]	3252
	3253	elif [[ $host = lcxt4 ]]
	3254	then
	3255
	3256	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3257
[367]	3258	elif [[ $host = lck ]]
	3259	then
	3260	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
[206]	3261	fi
	3262	wait
[164]	3263	fi
[102]	3264
	3265	# if [[ $scirocco = true ]]
	3266	# then
	3267	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
	3268	# else
	3269	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
	3270	# fi
[206]	3271	fi
[1]	3272	elif [[ $host = decalpha ]]
	3273	then
[102]	3274	dmpirun -np $numprocs a.out $ROPTS
[1]	3275	elif [[ $host = lctit ]]
	3276	then
	3277	export runfile=runfile.$kennung
	3278
	3279	echo "cd $PWD" > $runfile
	3280	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
	3281	echo "export cpurest=$cpurest" >> $runfile
	3282	echo "export fname=$fname" >> $runfile
	3283	echo "export localhost=$localhost" >> $runfile
	3284	echo "export return_addres=$return_addres" >> $runfile
	3285	echo "export return_username=$return_username" >> $runfile
	3286	echo "export tasks_per_node=$tasks_per_node" >> $runfile
	3287	echo "export write_binary=$write_binary" >> $runfile
	3288	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
	3289	echo "./a.out" >> $runfile
	3290	chmod u+x $runfile
	3291
	3292	if [[ "$QUEUE" = interactive ]]
	3293	then
[102]	3294	mpirun -np $numprocs a.out $ROPTS
[1]	3295	else
[127]	3296	(( mem_tsubame = $memory / 1024.0 ))
	3297	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
[118]	3298	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
[265]	3299	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
	3300	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
[1]	3301	fi
	3302
	3303	rm $runfile
	3304	else
[102]	3305	mpprun -n $numprocs a.out $ROPTS
[1]	3306	fi
	3307	[[ $? != 0 ]] && execution_error=true
	3308
	3309
	3310	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3311	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3312	then
	3313	apprentice
	3314	fi
	3315	else
[102]	3316	a.out $ROPTS
[1]	3317	fi
	3318	fi
	3319	if [[ $? != 0 \|\| $execution_error = true ]]
	3320	then
	3321
	3322	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3323	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3324	printf "\n +++ runtime error occured"
	3325	locat=execution
	3326	exit
	3327	else
[102]	3328	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3329	printf "\n$striche\n *** execution finished \n"
[260]	3330
[261]	3331	# Stop the dvr streaming server and process the dvr output in order
	3332	# to create dvrs- and html-files containing all streams
[260]	3333	if [[ "$dvrserver_id" != "" ]]
	3334	then
	3335	kill $dvrserver_id
	3336	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3337
[262]	3338	# If there is a directory, data have been output by the
	3339	# streaming server. Otherwise, user has chosen dvrp_output=local
	3340	if [[ -d DATA_DVR ]]
	3341	then
[261]	3342
[262]	3343	# Add the current dvr configuration file to the dvr output
	3344	# directory
	3345	cp .dvrserver.config DATA_DVR
	3346
	3347	# Process the dvr output (option -s for also generating
	3348	# sequence mode data)
	3349	process_dvr_output -d DATA_DVR -f $fname -s
	3350
	3351	else
	3352
	3353	# Process the local output
	3354	process_dvr_output -l -d DATA_DVR -f $fname
	3355
	3356	fi
	3357
	3358	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3359	then
	3360
	3361	# Process dvr output generated in local mode (dvrp_output=local)
	3362	process_dvr_output -l -d DATA_DVR -f $fname
	3363
[260]	3364	fi
[1]	3365	fi
	3366
	3367
	3368
	3369	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3370	(( i = 0 ))
	3371	while (( i < ioc ))
	3372	do
	3373	(( i = i + 1 ))
	3374	if (( i == 1 ))
	3375	then
	3376	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3377	fi
	3378	printf "\n >>> ${out_command[$i]}"
	3379	eval ${out_command[$i]}
	3380	if (( i == ioc ))
	3381	then
	3382	printf "\n$striche\n"
	3383	fi
	3384	done
	3385
	3386
	3387	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3388	if [[ $do_trace = true ]]
	3389	then
	3390	printf "\n\n"
	3391	ls -al
	3392	fi
	3393
	3394
	3395
	3396	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3397	(( i = 0 ))
	3398	while (( i < iout ))
	3399	do
	3400	(( i = i + 1 ))
	3401	if (( i == 1 ))
	3402	then
	3403	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3404	fi
	3405
	3406	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3407	files_for_pes=false; filetyp=file
	3408	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3409	then
	3410	files_for_pes=true; filetyp=directory
	3411	actionout[$i]=""
	3412	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3413	then
	3414	actionout[$i]=""
	3415	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3416	then
	3417	files_for_pes=true; filetyp=directory
	3418	actionout[$i]="ar"
	3419	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3420	then
	3421	actionout[$i]="ar"
	3422	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3423	then
	3424	files_for_pes=true; filetyp=directory
	3425	actionout[$i]="fl"
	3426	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3427	then
	3428	actionout[$i]="fl"
	3429	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3430	then
	3431	files_for_pes=true; filetyp=directory
	3432	actionout[$i]="tr"
	3433	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3434	then
	3435	actionout[$i]="tr"
	3436	fi
	3437
	3438	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3439	then
	3440	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3441	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3442	then
	3443	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3444	else
	3445
	3446
	3447	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3448	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3449	# REMOTE-RECHNUNGEN
	3450	if [[ "${actionout[$i]}" = tr ]]
	3451	then
	3452	if [[ $localhost != $fromhost ]]
	3453	then
	3454	if [[ $files_for_pes = false ]]
	3455	then
	3456	cps=""
	3457	cst=""
	3458	else
	3459	cps=-c
	3460	cst="/"
	3461	fi
[325]	3462	if [[ $localhost = ibmb \|\| $localhost = nech ]]
[1]	3463	then
	3464
	3465	# TRANSFER IN EIGENSTAENDIGEM JOB
	3466	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3467	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3468	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3469	if [[ $files_for_pes = false ]]
	3470	then
	3471	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3472	else
	3473	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3474	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3475	fi
	3476
	3477	echo "set -x" > transfer_${localout[$i]}
	3478	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3479
	3480	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	3481	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	3482	printf "\n or higher cycle\n"
	3483	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3484
[1]	3485	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3486
	3487	if [[ $localhost = nech ]]
	3488	then
[82]	3489	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3490	else
	3491	if [[ "$LOGNAME" = b323013 ]]
	3492	then
[164]	3493	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3494	else
[164]	3495	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3496	fi
	3497	fi
	3498
	3499	else
	3500
	3501	# TRANSFER INNERHALB DIESES JOBS
	3502	transfer_failed=false
[82]	3503	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	3504	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	3505	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3506	[[ $? != 0 ]] && transfer_failed=true
[1]	3507
	3508	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3509	# LOKALER MASCHINE ANLEGEN
	3510	if [[ $transfer_failed = true ]]
	3511	then
	3512	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3513	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3514
	3515	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3516	# ANLEGEN.
	3517	eval local_catalog=${pathout[$i]}
	3518	if [[ ! -d $local_catalog ]]
	3519	then
	3520	printf " *** local directory does not exist. Trying to create:\n"
	3521	printf " $local_catalog \n"
	3522	mkdir -p $local_catalog
	3523	fi
	3524	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3525	transfer_problems=true
	3526	fi
	3527	fi
	3528	else
	3529
	3530	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	3531	actionout[$i]=""
	3532	fi
	3533	fi
	3534
	3535
	3536	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3537	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3538	# REMOTE-RECHNUNGEN
	3539	if [[ "${actionout[$i]}" = tra ]]
	3540	then
	3541	if [[ $localhost != $fromhost ]]
	3542	then
	3543	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
	3544	then
	3545
	3546	# TRANSFER IN EIGENSTAENDIGEM JOB
	3547	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3548	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3549	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3550	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3551
	3552	echo "set -x" > transfer_${localout[$i]}
	3553	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3554
	3555	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	3556	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	3557	printf "\n or higher cycle\n"
	3558	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3559
[1]	3560	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3561
	3562	if [[ $localhost = nech ]]
	3563	then
[82]	3564	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3565	else
	3566	if [[ $LOGNAME = b323013 ]]
	3567	then
[164]	3568	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3569	else
[164]	3570	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3571	fi
	3572	fi
	3573
	3574	else
	3575
	3576	# TRANSFER INNERHALB DIESES JOBS
	3577	transfer_failed=false
[82]	3578	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	3579	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	3580	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3581	[[ $? != 0 ]] && transfer_failed=true
[1]	3582
	3583	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3584	# LOKALER MASCHINE ANLEGEN
	3585	if [[ $transfer_failed = true ]]
	3586	then
	3587	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3588	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3589
	3590	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3591	# ANLEGEN
	3592	eval local_catalog=${pathout[$i]}
	3593	if [[ ! -d $local_catalog ]]
	3594	then
	3595	printf " *** local directory does not exist. Trying to create:\n"
	3596	printf " $local_catalog \n"
	3597	mkdir -p $local_catalog
	3598	fi
	3599
	3600	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3601	transfer_problems=true
	3602	fi
	3603	fi
	3604	else
	3605
	3606	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	3607	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	3608	actionout[$i]=a
	3609	fi
	3610	fi
	3611
	3612
	3613	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	3614	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	3615	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	3616	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	3617	if [[ "${actionout[$i]}" = fl ]]
	3618	then
	3619	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3620	chmod g+rx $tmp_data_catalog
	3621	if [[ $files_for_pes = false ]]
	3622	then
	3623	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3624	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3625	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	3626	else
	3627	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	3628	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3629	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	3630	cd ${localout[$i]}
	3631	for file in $(ls *)
	3632	do
	3633	ln -f $file $tmp_data_catalog/${frelout[$i]}
	3634	done
	3635	cd $TEMPDIR
[1]	3636	fi
	3637
	3638
	3639	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	3640	if [[ $store_on_archive_system = true ]]
	3641	then
	3642
	3643	if [[ $archive_system = asterix ]]
	3644	then
	3645	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3646	if [[ $files_for_pes = false ]]
	3647	then
	3648	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3649	else
	3650	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3651	fi
	3652	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3653	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	3654	echo "then" >> archive_${frelout[$i]}
	3655	echo " do_stageout=false" >> archive_${frelout[$i]}
	3656	echo "else" >> archive_${frelout[$i]}
	3657	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	3658	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	3659	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	3660	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	3661	if [[ $files_for_pes = false ]]
	3662	then
	3663	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	3664	else
	3665	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	3666	fi
	3667	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	3668	echo "fi" >> archive_${frelout[$i]}
	3669	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3670	elif [[ $archive_system = DMF ]]
	3671	then
	3672	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3673	if [[ $files_for_pes = false ]]
	3674	then
	3675	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	3676	locat=DMF
	3677	exit
	3678	else
	3679	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	3680	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	3681	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	3682	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	3683	fi
	3684	elif [[ $archive_system = tivoli ]]
	3685	then
	3686	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3687	if [[ $files_for_pes = false ]]
	3688	then
	3689	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3690	echo "set -x" >> archive_${frelout[$i]}
	3691	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3692	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3693	else
	3694
	3695	echo "set -x" >> archive_${frelout[$i]}
	3696	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3697	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3698	cd $tmp_data_catalog
	3699	all_files=`ls -1 ${frelout[$i]}/*`
	3700	cd - > /dev/null
	3701	(( inode = 0 ))
	3702	(( tp1 = tasks_per_node + 1 ))
	3703	while (( inode < nodes ))
	3704	do
	3705	# echo "*** all_files = \"$all_files\" "
	3706	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3707	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3708	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	3709	# echo "*** files = \"$files\" "
	3710	# echo "*** all_files = \"$all_files\" "
	3711	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3712	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3713	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3714	(( inode = inode + 1 ))
	3715	done
	3716	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3717	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3718	fi
	3719	elif [[ $archive_system = ut ]]
	3720	then
	3721	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3722	if [[ $files_for_pes = false ]]
	3723	then
	3724	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3725	echo "set -x" >> archive_${frelout[$i]}
	3726	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3727	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3728	else
	3729
	3730	echo "set -x" >> archive_${frelout[$i]}
	3731	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3732	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3733	cd $tmp_data_catalog
	3734	all_files=`ls -1 ${frelout[$i]}/*`
	3735	cd - > /dev/null
	3736	(( inode = 0 ))
	3737	(( tp1 = tasks_per_node + 1 ))
	3738	while (( inode < nodes ))
	3739	do
	3740	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3741	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3742	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3743	(( inode = inode + 1 ))
	3744	done
	3745	fi
	3746	elif [[ $archive_system = none ]]
	3747	then
	3748	printf " +++ archiving on $localhost not available!\n"
	3749	fi
	3750
	3751	if [[ $archive_system != none ]]
	3752	then
	3753	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
	3754	then
[164]	3755	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
	3756	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3757	elif [[ $localhost = nech ]]
	3758	then
[82]	3759	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3760	fi
	3761	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3762	fi
	3763	else
	3764	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
	3765	fi
	3766
	3767
	3768	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	3769	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3770	if [[ $files_for_pes = false ]]
	3771	then
	3772	cat /dev/null > ${pathout[$i]}
	3773	else
	3774	mkdir -p ${pathout[$i]}
	3775	fi
	3776
	3777	fi
	3778
	3779
	3780	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	3781	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	3782	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3783	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	3784	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	3785	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	3786	if [[ "${actionout[$i]}" = ar ]]
	3787	then
	3788	if [[ $files_for_pes = false ]]
	3789	then
	3790	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3791	printf "\n ${pathout[$i]}"
	3792	printf "\n File will be copied to archive-system ($archive_system) !\n"
	3793	else
	3794	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	3795	printf "\n ${pathout[$i]}"
	3796	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	3797	fi
	3798	mv ${localout[$i]} ${frelout[$i]}
	3799
	3800	file_saved=false
	3801
	3802	if [[ $archive_system = asterix ]]
	3803	then
	3804	do_stageout=true
	3805	(( stageout_anz = 0 ))
	3806	while [[ $do_stageout = true ]]
	3807	do
	3808	if [[ $files_for_pes = false ]]
	3809	then
	3810	stageout ${frelout[$i]} > STAGE_OUTPUT
	3811	else
	3812	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	3813	fi
	3814	cat STAGE_OUTPUT
	3815	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	3816	then
	3817	file_saved=true
	3818	do_stageout=false
	3819	else
	3820	if [[ $files_for_pes = false ]]
	3821	then
	3822	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	3823	else
	3824	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	3825	fi
	3826	(( stageout_anz = stageout_anz + 1 ))
	3827	if (( stageout_anz == 10 ))
	3828	then
	3829	printf "\n +++ stoped after 10 unsuccessful tries!"
	3830	archive_save=false
	3831	do_stageout=false
	3832	else
	3833	printf "\n *** new try to store on archive after 15 min:"
	3834	sleep 900
	3835	fi
	3836	fi
	3837	done
	3838	elif [[ $archive_system = DMF ]]
	3839	then
	3840	if [[ $files_for_pes = false ]]
	3841	then
	3842	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	3843	locat=DMF
	3844	exit
	3845	else
	3846	rm -rf $ARCHIVE/${frelout[$i]}
	3847	cp -r ${frelout[$i]} $ARCHIVE
	3848	fi
	3849	file_saved=true
	3850	elif [[ $archive_system = tivoli ]]
	3851	then
	3852	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3853	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3854	# GELEGT WERDEN
	3855	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3856	chmod g+rx $tmp_data_catalog
	3857	if [[ $files_for_pes = false ]]
	3858	then
	3859	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3860	else
	3861	mkdir $tmp_data_catalog/${frelout[$i]}
	3862	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3863	fi
	3864
	3865	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3866	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3867	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3868	if [[ $files_for_pes = false ]]
	3869	then
	3870	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3871	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3872	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3873	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3874	else
	3875	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3876	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3877	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3878	fi
	3879
[164]	3880	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3881	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3882	file_saved=true
	3883
	3884	elif [[ $archive_system = ut ]]
	3885	then
	3886	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3887	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3888	# GELEGT WERDEN
	3889	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3890	chmod g+rx $tmp_data_catalog
	3891	if [[ $files_for_pes = false ]]
	3892	then
	3893	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3894	else
	3895	mkdir $tmp_data_catalog/${frelout[$i]}
	3896	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3897	fi
	3898
	3899	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3900	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3901	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3902	if [[ $files_for_pes = false ]]
	3903	then
	3904	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3905	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3906	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3907	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3908	else
	3909	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3910	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3911	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3912	fi
	3913
[82]	3914	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3915	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3916	file_saved=true
	3917
	3918	else
	3919	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	3920	archive_save=false
	3921	fi
	3922	if [[ $file_saved = true ]]
	3923	then
	3924	if [[ $files_for_pes = false ]]
	3925	then
	3926	cat /dev/null > ${pathout[$i]}
	3927	else
	3928	mkdir -p ${pathout[$i]}
	3929	fi
	3930	fi
	3931	fi
	3932
	3933	# APPEND AUF LOKALER MASCHINE
	3934	if [[ "${actionout[$i]}" = "a" ]]
	3935	then
	3936	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	3937	cat ${localout[$i]} >> ${pathout[$i]}
	3938	fi
	3939
	3940	# KOPIEREN AUF LOKALER MASCHINE
	3941	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	3942	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	3943	then
	3944
	3945	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	3946	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	3947	then
	3948	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	3949	if [[ $link_local_output = true ]]
	3950	then
	3951	printf " using ln -f\n"
	3952	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3953	fi
	3954	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	3955	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	3956	then
	3957	if [[ $link_local_output = true ]]
	3958	then
	3959	printf " ln failed, using cp...\n"
	3960	fi
	3961	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3962	fi
[1]	3963	else
	3964	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	3965	if [[ $link_local_output = true ]]
	3966	then
	3967	printf " using ln -f\n"
	3968	ln -f ${localout[$i]} ${pathout[$i]}
	3969	fi
	3970	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	3971	if [[ ! -f "${pathout[$i]}" ]]
	3972	then
	3973	if [[ $link_local_output = true ]]
	3974	then
	3975	printf " ln failed, using cp...\n"
	3976	fi
	3977	cp ${localout[$i]} ${pathout[$i]}
	3978	fi
[1]	3979	fi
	3980
	3981	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	3982	then
	3983
	3984	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	3985	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	3986	# WIRD DANN KOPIERT
	3987	# PER MOVE UMBENANNT WERDEN
	3988	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	3989	if [[ $link_local_output = true ]]
	3990	then
	3991	printf " using ln -f\n"
	3992	mkdir ${pathout[$i]}
	3993	cd ${localout[$i]}
	3994	for file in $(ls *)
	3995	do
	3996	ln -f $file ${pathout[$i]}
	3997	done
	3998	cd $TEMPDIR
	3999	fi
	4000	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	4001	if [[ ! -f "${pathout[$i]}/_0000" ]]
	4002	then
	4003	if [[ $link_local_output = true ]]
	4004	then
	4005	printf " ln failed for .../_0000, using cp...\n"
	4006	fi
	4007	cp -r ${localout[$i]} ${pathout[$i]}
	4008	fi
[1]	4009
	4010	fi
	4011	fi
	4012	done
	4013	if (( i != 0 ))
	4014	then
	4015	if [[ $transfer_problems = true ]]
	4016	then
	4017	printf "\n$striche\n *** OUTPUT-files saved"
	4018	printf "\n +++ WARNING: some data transfers failed! \n"
	4019	else
	4020	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4021	fi
	4022	fi
	4023
	4024
	4025	# EVENTUELL FOLGEJOB STARTEN
	4026	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4027	if [[ -f CONTINUE_RUN ]]
	4028	then
	4029
	4030	if [[ $archive_save = true ]]
	4031	then
	4032
	4033	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4034	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4035	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4036	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4037	# HANDEN
	4038	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4039	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4040	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4041	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4042	then
	4043	mc=`echo $mc \| sed 's/#/f/g'`
	4044	fi
	4045
	4046
	4047	# JOB STARTEN
	4048	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4049	echo " $mc"
	4050	printf "\n$striche\n"
	4051	if [[ $localhost != $fromhost ]]
	4052	then
	4053
[204]	4054	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
[1]	4055	then
	4056	echo "*** ssh will be used to initiate restart-runs!"
	4057	echo " return_addres=\"$return_addres\" "
	4058	echo " return_username=\"$return_username\" "
	4059	if [[ $return_addres = 172.20.25.41 ]]
	4060	then
	4061	# WORKAROUND AUF SCIROCCO AM TIT
[33]	4062	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
[1]	4063	else
[33]	4064	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4065	fi
	4066	else
	4067	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4068	locat=restart; exit
	4069	fi
	4070
	4071	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4072	# DER AKTUELLE JOB ENDET
	4073	sleep 30
	4074
	4075	else
	4076
	4077	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4078	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4079	cd $LOCAL_PWD
[108]	4080	if [[ $localhost = lcfimm ]]
	4081	then
	4082	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4083	else
	4084	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4085	fi
[1]	4086	cd - > /dev/null
	4087	fi
	4088	printf "\n$striche\n *** restart-run initiated \n"
	4089
	4090
	4091	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4092	# GEHOLT WORDEN SIND, LOESCHEN
	4093	(( i = 0 ))
	4094	while (( i < iin ))
	4095	do
	4096	(( i = i + 1 ))
	4097	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4098	then
	4099	rm -r $tmp_data_catalog/${frelin[$i]}
	4100	fi
	4101	done
	4102
	4103	else
	4104
	4105	printf "\n +++ no restart-run possible, since errors occured"
	4106	printf "\n during the archive process"
	4107	fi
	4108
	4109	fi
	4110
	4111
	4112
	4113	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4114	if [[ "$email_notification" != "none" ]]
[1]	4115	then
	4116
	4117	if [[ $localhost != $fromhost ]]
	4118	then
	4119	if [[ -f CONTINUE_RUN ]]
	4120	then
	4121	echo "PALM restart run necessary" > email_text
	4122	echo "description header of actual run:" >> email_text
	4123	cat CONTINUE_RUN >> email_text
	4124	echo "mrun-command to restart:" >> email_text
	4125	echo "$mc" >> email_text
	4126	else
	4127	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4128	fi
	4129	mail $email_notification < email_text
	4130	printf "\n *** email notification sent to \"$email_notification\" "
	4131	fi
	4132	fi
	4133
	4134
	4135
	4136	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4137	cd $HOME
	4138	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4139
	4140	else
	4141
	4142
	4143	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4144	# CHENDE AKTIONEN DURCHGEFUEHRT
	4145
	4146	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[82]	4147	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	4148	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4149	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4150	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4151	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4152	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4153	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4154	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4155	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4156	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4157	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4158	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4159	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4160	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4161	if [[ $use_openmp = true ]]
	4162	then
	4163	mrun_com=${mrun_com}" -O"
	4164	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
	4165	else
	4166	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
	4167	fi
	4168	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
	4169	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4170	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4171	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4172	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4173	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4174	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[1]	4175	if [[ $do_remote = true ]]
	4176	then
	4177	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4178	fi
	4179
	4180
	4181	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4182	jobfile=jobfile.$RANDOM
	4183
	4184
	4185	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4186	echo "mkdir $TEMPDIR" >> $jobfile
	4187	echo "cd $TEMPDIR" >> $jobfile
	4188
	4189
	4190	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4191	if [[ $do_trace = true ]]
	4192	then
	4193	echo "set -x" >> $jobfile
	4194	else
	4195	echo "set +vx" >> $jobfile
	4196	fi
	4197
	4198
[191]	4199	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4200	# DATEI FUER DEN JOB
	4201	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
[1]	4202	then
	4203
[191]	4204	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4205	# KOPIEREN
	4206	if [[ $restart_run != true ]]
	4207	then
	4208	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4209	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4210	fi
[1]	4211
[191]	4212	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[193]	4213	echo "set -x" >> $jobfile
	4214	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4215	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4216
[193]	4217	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4218	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4219	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4220	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4221	echo "execute_mrun=true" >> $jobfile
	4222	echo " " >> $jobfile
	4223
[191]	4224	else
	4225
	4226	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4227	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4228	if [[ $do_compile = true ]]
	4229	then
	4230
	4231	source_catalog=SOURCES_FOR_RUN_$fname
	4232
	4233	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4234	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4235	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4236	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4237	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4238	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4239
	4240	for filename in $source_list
	4241	do
	4242	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4243	echo "cat > $filename << \"%END%\"" >> $jobfile
	4244	cat $source_catalog/$filename >> $jobfile
	4245	echo " " >> $jobfile
	4246	echo "%END%" >> $jobfile
	4247	echo " " >> $jobfile
	4248	done
	4249
[1]	4250	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4251	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4252	cat $source_catalog/Makefile >> $jobfile
[1]	4253	echo " " >> $jobfile
	4254	echo "%END%" >> $jobfile
	4255	echo " " >> $jobfile
	4256
[191]	4257	echo "cd - > /dev/null" >> $jobfile
[1]	4258
[191]	4259	fi
[1]	4260
	4261
[191]	4262	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4263	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4264	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4265	cat $config_file >> $jobfile
	4266	echo "%END%" >> $jobfile
	4267	echo " " >> $jobfile
[1]	4268
	4269
[191]	4270	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4271	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4272	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4273	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4274	echo "%END%" >> $jobfile
	4275	if [[ $host = lctit ]]
	4276	then
	4277	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
	4278	echo "mv mrun_new $mrun_script_name" >> $jobfile
	4279	fi
	4280	echo "chmod u+x $mrun_script_name" >> $jobfile
	4281	echo "execute_mrun=true" >> $jobfile
	4282	echo " " >> $jobfile
[1]	4283
	4284	fi
	4285
[191]	4286
[1]	4287	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4288	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4289	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4290	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4291	if [[ $do_remote = true ]]
	4292	then
	4293	(( i = 0 ))
	4294	while (( i < iin ))
	4295	do
	4296	(( i = i + 1 ))
	4297	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4298	if [[ "${transin[$i]}" = job ]]
	4299	then
	4300	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4301	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4302	echo " " >> $jobfile
	4303	echo "%END%" >> $jobfile
	4304	else
[82]	4305	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4306	fi
	4307
	4308	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4309	echo "if [[ \$? = 1 ]]" >> $jobfile
	4310	echo "then" >> $jobfile
	4311	echo " echo \" \" " >> $jobfile
	4312	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4313	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4314	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4315	echo " execute_mrun=false" >> $jobfile
	4316	echo "fi" >> $jobfile
	4317	done
	4318	fi
	4319
	4320	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4321	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4322	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4323	echo "export LOCAL_PWD" >> $jobfile
	4324
	4325	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4326	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4327	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4328
[66]	4329	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4330	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4331	then
	4332	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4333	fi
[1]	4334
	4335	# MRUN AUF ZIELRECHNER AUFRUFEN
	4336	echo "set -x" >> $jobfile
	4337	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4338
	4339	echo 'ls -al; echo `pwd`' >> $jobfile
	4340	echo "cd \$HOME" >> $jobfile
	4341	echo "rm -rf $TEMPDIR" >> $jobfile
	4342
	4343
	4344
	4345
	4346	# JOB PER SUBJOB STARTEN
	4347	if [[ $silent = false ]]
	4348	then
	4349	printf "\n "
	4350	else
	4351	printf "\n\n"
	4352	fi
	4353
[352]	4354	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
[1]	4355	rm -rf $jobfile
	4356
	4357
	4358	fi # ENDE REMOTE-TEIL
	4359
	4360
	4361
	4362	# ENDE DER PROZEDUR

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |