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source: palm/trunk/SCRIPTS/mrun @ 343

Last change on this file since 343 was 343, checked in by maronga, 15 years ago
adjustments for lcxt4 and ibmy, allow user 2d xy cross section output at z=nzb+1
Property svn:keywords set to `Id Rev`
File size: 164.2 KB

Rev	Line
[71]	1	#!/bin/ksh
[66]	2	# mrun - Plot-Shellskript
[169]	3	# $Id: mrun 343 2009-06-24 12:59:09Z maronga $
[1]	4
	5	# Prozedur zum Starten von Modellaeufen
	6
	7	# letzte Aenderung:
	8	# 03/03/94 - Siggi - Entwicklungsbeginn
	9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
	10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
	11	# zelne Variable exportiert. Dies ist noetig, weil an-
	12	# sonsten irgendein Speicher ueberlaeuft und von mrun
	13	# aufgerufene Programme (z.B. stageout) mit Fehlern
	14	# abbrechen (too many arguments)
	15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
	16	# defaultmaessig im RRZN-Profile eingeschaltet
	17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
	18	# wegfallen
	19	# 25/04/00 - Siggi - Version 1.5
	20	# remote_addres und remote_user in return_addres bzw.
	21	# return_username umbenannt, return_username wird dem
	22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
	23	# Neue Variable remote_username, die beim interaktiven
	24	# mrun-Aufruf zwingend ueber die neue Option -u oder
	25	# in der Konfigurationsdatei angegeben werden muss.
	26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
	27	# Version 1.7
	28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
	29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
	30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
	31	# zu bestimmen; Praeprozessoroptionen haben nun alle
	32	# die Form -Dtext=text, weil auf IBM sonst text durch
	33	# die leere Zeichenkette ersetzt wird
	34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
	35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
	36	# (-D$OMP=OMP) in order to avoid problems with
	37	# OMP_NUM_THREADS
	38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
	39	# tar files, one for each node used
	40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
	41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
	42	# 17/01/05 - Siggi - job for data transfer to local machine now within
	43	# job class c1 (HLRN)
	44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
	45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
	46	# base filename and cycle number
	47	# 16/02/05 - Gerald - hababai validated
	48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
	49	# 29/03/05 - Marcus - berni*-en0 validated
	50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
	51	# 24/04/05 - Siggi - netcdf support on lcmuk
	52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
	53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
	54	# number) can now be used within interactive runs
	55	# 12/05/05 - Siggi - netcdf support on ibm
	56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
	57	# 18/05/05 - Siggi - netcdf support on nec
	58	# 24/05/05 - Siggi - netcdf support on ibms
	59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
	60	# to 30 seconds
	61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
	62	# PATH is temporarily set)
	63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
	64	# caused warnings in the job protocol
	65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
	66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
	67	# removed
	68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
	69	# realized by file attribute trpe
	70	# 28/10/05 - Siggi - if existing, the file extension is output in case
	71	# of missing input file - no job abort in case of
	72	# missing input files with file extensions
	73	# (preliminary solution)
	74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
	75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
	76	# 07/12/05 - Siggi - gallego and elephanta admitted
	77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
	78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
	79	# 20/01/06 - Siggi - cpp directive for ibmy
	80	# 09/02/06 - Siggi - ibmy admitted for batch mode
	81	# 13/04/06 - Siggi - ostria admitted
	82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
	83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
	84	# optimization of OpenMP runs (option stacksize is
	85	# necessary for large gridpoint numbers because
	86	# otherwise a segmentation fault occurs)
	87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
	88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
	89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
	90	# 20/09/06 - Marcus - add DVRP library on nech
	91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
	92	# on local NAMELIST file ENVPAR
	93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
	94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
	95	# 06/02/07 - Siggi - add DVRP library on lcmuk
	96	# 07/02/07 - Siggi - revision of source code handling, source code is
	97	# now expected in directory given by source_path and
	98	# not in the current working directory, source code
	99	# files provided in add_source_path are allways
	100	# compiled, source code to be compiled is allways
	101	# sampled in SOURCES_FOR_RUN_$fname which is a
	102	# subdirectory of the current working directory,
[5]	103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
[1]	104	# adapted for RIAM (neck)
[5]	105	# bugfix for cycle number of output file (extout)
	106	# all hpmuk-related code removed
[14]	107	# 14/02/07 - Siggi - dvrp support for neck added
[21]	108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
[26]	109	# mrun_path replaced by PALM_BIN,
	110	# all machines are calling interpret_config.x
[66]	111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
	112	# output
[69]	113	# 16/03/07 - Siggi - adjustments for lctit
[78]	114	# 29/03/07 - Siggi - global revision transfered to batch job by new
	115	# option -G
[82]	116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
	117	# + netcdf/dvrp-options are read from configuration
	118	# file, host identifier (local_host) is read from
	119	# config file, code related to ftp filetransfer
	120	# removed (incl. option -f)
[97]	121	# 19/06/07 - Siggi - time limit for cdata jobs increased
[102]	122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
	123	# if new option -Y (coupling) is given,
	124	# output of executables to aout_output removed,
	125	# messages are immediately written to stdout instead
[108]	126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
	127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
	128	# variables out to the nodes in coupled mode -disabled-
	129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
[109]	130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
	131	# environment variables out to the nodes in coupled mode
[118]	132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
	133	# suggestions
[122]	134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
	135	# argument -g group_number, admit all sla* node_usage
	136	# queues
[129]	137	# 30/10/07 - Marcus - further adjustments for queues on lctit
[149]	138	# 14/02/08 - Bjoern - link of restart files with long file name possible
	139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
	140	# true, mrun tries "ln -f" on local output and resorts
	141	# to "cp" or "cp -r" on error
[164]	142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
	143	# which allows the user to choose his own job catalog
	144	# by setting job_catalog in the configuration file
	145	# (default is ~/job_queue),
[172]	146	# workaround for mpiexec with -env option,
[164]	147	# adjustments for lcxt4 (Bergen Center for Computational
	148	# Science)
[183]	149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
	150	# true, mrun tries "ln -f" on local input and resorts
	151	# to "cp" or "cp -r" on error
[180]	152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
[179]	153	# 14/07/08 - Siggi - adjustments for lcsgih
[188]	154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
[204]	155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
[210]	156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
	157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
	158	# argument
[211]	159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
	160	# file
	161	# 11/11/08 - Siggi - rules for using user code files changed: user
	162	# code splitted into one file per subroutine,
	163	# user can provide his/her own makefile, only
	164	# default source-code filenames are allowed
[215]	165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
[221]	166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
	167	# with environment variable mpilib
[223]	168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
	169	# using environment variable totalview
[246]	170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
	171	# interactive runs
[253]	172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
[260]	173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
	174	# dvr streaming server is automatically started using
	175	# new variable dvr_server and a configuration file
	176	# .dvrserver.config,
[261]	177	# processing of dvr output files using new script
	178	# process_dvr_output implemented, in order to make
	179	# dvr application more user friendly
[265]	180	# 20/03/09 - Marcus - update of n1ge command for lctit
[291]	181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
	182	# to be followed by a coupled atmosphere-ocean run
[343]	183	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
	184	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
[211]	185
[1]	186
	187	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	188
	189	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	190	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	191	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	192
	193	AddFilenames=""
	194	additional_conditions=""
	195	add_source_path=""
	196	afname=""
	197	archive_save=true
	198	archive_system=none
	199	compiler_name=""
	200	cond1=""
	201	cond2=""
	202	config_file=.mrun.config
[206]	203	coupled_dist=""
	204	coupled_mode="mpi1"
[1]	205	cpp_opts=""
[82]	206	cpp_options=""
[1]	207	cpumax=0
	208	cpurest=0
	209	delete_temporary_catalog=true
	210	do_batch=false
	211	do_compile=true
	212	do_remote=false
	213	do_stagein=true
	214	do_stageout=true
	215	do_trace=false
	216	email_notification=""
	217	exclude=""
	218	executable=""
	219	execution_error=false
[67]	220	fimm=false
[1]	221	fname=test
	222	fromhost=""
[78]	223	global_revision=""
[122]	224	group_number=none
[1]	225	host=""
	226	host_file=""
	227	hp=""
	228	ignore_archive_error=false
	229	input_list=""
	230	interpreted_config_file=""
[164]	231	job_catalog="~/job_queue"
[1]	232	job_on_file=""
	233	keep_data_from_previous_run=false
[183]	234	link_local_input=false
[149]	235	link_local_output=false
[1]	236	localhost_realname=$(hostname)
	237	local_compile=false
[260]	238	local_dvrserver_running=.FALSE.
[1]	239	locat=normal
	240	mainprog=""
	241	makefile=""
	242	mc=$0
	243	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	244	do
	245	mc=`echo $mc \| cut -f2- -d"/"`
	246	done
	247	module_files=""
	248	mrun_script_name=$mc
[82]	249	netcdf_inc=""
	250	netcdf_lib=""
[1]	251	netcdf_support=false
	252	node_usage=default
	253	numprocs=""
[206]	254	numprocs_atmos=0
	255	numprocs_ocean=0
[1]	256	OOPT=""
	257	openmp=false
	258	output_list=""
	259	package_list=""
	260	punkte="..........................................................."
	261	queue=none
	262	read_from_config=""
[5]	263	restart_run=false
[146]	264	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	265	if [[ $return_addres = 130.75.105.158 ]]
	266	then
	267	return_addres=172.20.25.41
	268	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
	269	fi
	270	return_password=""
	271	return_username=$LOGNAME
	272	remotecall=false
	273	remote_username=""
[102]	274	run_coupled_model=false
[1]	275	run_mode=""
	276	scirocco=false
	277	store_on_archive_system=true
	278	striche=" ----------------------------------------------------------------------------"
	279	silent=false
	280	source_list=""
	281	source_path=SOURCE
	282	tasks_per_node=""
	283	threads_per_task=1
	284	tmpcreate=false
	285	tmp_data_catalog=""
	286	transfer_problems=false
	287	usern=$LOGNAME
	288	working_directory=`pwd`
	289	TOPT=""
	290	XOPT=""
	291	zeit=$( date \| cut -c 12-19 )
	292
	293	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	294	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	295
[66]	296	typeset -R30 calltime
[1]	297	typeset -L20 spalte1
	298	typeset -L40 spalte2
	299	typeset -L60 spalte3
	300	typeset -L35 string1=`date`
	301	typeset -L12 string2=$usern
	302	typeset -L12 string3=$localhost_realname
	303	typeset -L12 string4
	304	typeset -L12 string5
[201]	305	typeset -L30 version="MRUN 2.0 Rev$Rev: 343 $"
[1]	306
	307
	308
	309	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	310	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	311
	312	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	313	# EXPORTIERT WERDEN
	314	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	315	export group_number input_list memory numprocs output_list queue run_mode
[1]	316
	317
	318
	319	# FEHLERBEHANDLUNG
	320	# BEI EXIT:
[83]	321	trap 'rm -rf $working_directory/tmp_mrun
[69]	322	if [[ $locat != localhost ]]
[1]	323	then
[22]	324	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	325	# then
	326	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	327	#MRUN-calls on $localhost
	328	#
	329	#date and time user localhost remotehost termination mrun-command
	330	#--------------------------------------------------------------------------------------------------------------------
	331	#%STATEND%
	332	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	333	# fi
	334	#
	335	# # EINTRAG IN DIE STATISTIK-DATEI
	336	# string4=$host
	337	# string5=$locat
	338	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	339	# then
	340	# if [[ $do_batch = true ]]
	341	# then
	342	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	343	# else
	344	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	345	# fi
	346	# fi
[69]	347	echo " " > /dev/null
[1]	348	fi
	349
	350	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	351	then
	352
	353	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	354	(( i = 0 ))
	355	while (( i < iec ))
	356	do
	357	(( i = i + 1 ))
	358	printf "\n *** Execution of ERROR-command:\n"
	359	printf " >>> ${err_command[$i]}\n"
	360	eval ${err_command[$i]}
	361	done
	362	if [[ -n $interpreted_config_file ]] then
	363	rm -rf $interpreted_config_file
	364	fi
[71]	365	if [[ -n .mrun_environment ]] then
	366	rm -rf .mrun_environment
	367	fi
[1]	368	if [[ $tmpcreate = true ]]
	369	then
	370	printf "\n *** Contents of \"$TEMPDIR\":\n"
	371	ls -al; cd
	372	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	373	fi
[260]	374	if [[ "$dvrserver_id" != "" ]]
	375	then
	376	echo "+++ killing dvrserver_id=$dvrserver_id"
	377	kill $dvrserver_id
	378	fi
[1]	379	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	380	then
	381	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	382	fi
	383	printf "\n\n+++ MRUN killed \n\n"
	384	elif [[ $locat != control_c ]]
	385	then
	386	printf "\n\n --> all actions finished\n\n"
	387	printf " Bye, bye $usern !!\n\n"
	388	fi' exit
	389
	390
	391	# BEI TERMINAL-BREAK:
[83]	392	trap 'rm -rf $working_directory/tmp_mrun
[69]	393	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	394	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	395	then
	396	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	397	fi
[260]	398	if [[ "$dvrserver_id" != "" ]]
	399	then
	400	echo "+++ killing dvrserver_id=$dvrserver_id"
	401	kill $dvrserver_id
	402	fi
[1]	403	printf "\n+++ MRUN killed by \"^C\" \n\n"
	404	locat=control_c
	405	exit
	406	' 2
	407
	408
[22]	409	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	410	# BEEN SET
	411	if [[ "$PALM_BIN" = "" ]]
	412	then
	413	printf "\n +++ environment variable PALM_BIN has not been set"
	414	printf "\n please set it to the directory where the PALM scripts are located"
	415	locat=palm_bin; exit
	416	fi
[180]	417	export PATH=$PALM_BIN:$PATH
[22]	418
	419
[1]	420
	421	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	422	# FUER FOLGEJOBS BENOETIGT WIRD
[291]	423	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
[1]	424	do
	425	case $option in
	426	(a) afname=$OPTARG;;
	427	(A) store_on_archive_system=false; mc="$mc -A";;
	428	(b) do_batch=true; mc="$mc -b";;
	429	(B) delete_temporary_catalog=false; mc="$mc -B";;
	430	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	431	(C) restart_run=true; mc="$mc -C";;
[1]	432	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	433	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	434	(F) job_on_file="-D"; mc="$mc -F";;
[122]	435	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	436	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	437	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	438	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	439	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	440	(I) ignore_archive_error=true; mc="$mc -I";;
	441	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	442	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	443	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	444	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	445	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	446	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
	447	(O) use_openmp=true; mc="$mc -O";;
	448	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	449	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	450	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	451	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	452	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	453	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	454	(S) read_from_config=false; mc="$mc -S";;
	455	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
	456	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
	457	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	458	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	459	(v) silent=true; mc="$mc -v";;
	460	(x) do_trace=true;set -x; mc="$mc -x";;
	461	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	462	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	463	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[1]	464	(\?) printf "\n +++ unknown option $OPTARG \n"
	465	printf "\n --> type \"$0 ?\" for available options \n"
	466	locat=parameter;exit;;
	467	esac
	468	done
	469
	470
	471	# EVTL. POSITIONSPARAMETER EINLESEN
	472	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	473	shift OPTIND-1
	474
	475
	476	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	477	if [[ "$1" = "?" ]]
	478	then
	479	(printf "\n *** mrun can be called as follows:\n"
[291]	480	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
[1]	481	printf "\n Description of available options:\n"
	482	printf "\n Option Description Default-Value"
	483	printf "\n -a base name of input files equiv. -d"
	484	printf "\n -A no archiving when using file-attribute fl"
	485	printf "\n -b batch-job on local machine ---"
	486	printf "\n -B do not delete temporary directory at end ---"
	487	printf "\n -c configuration file .mrun.config"
	488	printf "\n -d base name of files attached to program test"
	489	printf "\n -D preprocessor(cpp)-directives \"\" "
	490	printf "\n -F create remote job file only ---"
	491	printf "\n -h execution host $localhost_realname"
	492	printf "\n -i INPUT control list \"\" "
	493	printf "\n -I archiving errors of previous batch-jobs"
	494	printf "\n will be ignored"
	495	printf "\n -k keep data from previous run"
	496	printf "\n -K additional conditions for controling"
	497	printf "\n usage of conditional code and"
	498	printf "\n env-variables in configuration file \"\" "
	499	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	500	printf "\n -M Makefile name Makefile"
	501	printf "\n -n node usage (shared/not_shared) depending on -h"
	502	printf "\n -o OUTPUT control list \"\" "
	503	printf "\n -O use OpenMP ---"
	504	printf "\n -p software package list \"\" "
	505	printf "\n -q queue \"$queue\" "
	506	printf "\n -r run control list (combines -i -o) \"\" "
	507	printf "\n -s filenames of routines to be compiled \"\" "
	508	printf "\n must end with .f, .f90, .F, or .c !"
	509	printf "\n use \"..\" for more than one file and wildcards"
	510	printf "\n -s TEST compiles all files with w-permit"
	511	printf "\n -S config file interpreted by shellscript ---"
	512	printf "\n -t allowed cpu-time in seconds (batch) 0"
	513	printf "\n -T tasks per node depending on -h"
	514	printf "\n -u username on remote machine \"\" "
	515	printf "\n -v no prompt for confirmation ---"
	516	printf "\n -x tracing of mrun for debug purposes ---"
	517	printf "\n -X # of processors (on parallel machines) 1"
[291]	518	printf "\n -y add appendix \"_O\" to all local output"
	519	printf "\n files (ocean precursor runs followed by"
	520	printf "\n coupled atmosphere-ocean runs) ---"
[206]	521	printf "\n -Y run coupled model, \"#1 #2\" with"
	522	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[1]	523	printf "\n "
	524	printf "\n Possible values of positional parameter <modus>:"
	525	printf "\n \"?\" - this outline \n\n") \| more
	526	exit
	527	elif [[ "$1" != "" ]]
	528	then
	529	printf "\n +++ positional parameter $1 unknown \n"
	530	locat=parameter; exit
	531	fi
	532
	533
	534
	535	# KURZE STARTMELDUNG
	536	printf "\n*** $version "
	537	printf "\n will be executed. Please wait ..."
	538
	539
[82]	540
	541	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	542	if [[ ! -f $config_file ]]
	543	then
	544	printf "\n\n +++ configuration file: "
	545	printf "\n $config_file"
	546	printf "\n does not exist"
	547	locat=connect; exit
	548	fi
	549
	550
	551	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	552	line=""
	553	grep "%host_identifier" $config_file > tmp_mrun
	554	while read line
	555	do
[206]	556	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	557	then
	558	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	559	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	560	if [[ $localhost_realname = $HOSTNAME ]]
[82]	561	then
	562	localhost=$host_identifier
	563	break
	564	fi
	565	fi
	566	done < tmp_mrun
	567
	568	if [[ "$localhost" = "" ]]
	569	then
	570	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	571	printf "\n for local host \"$localhost_realname\"."
	572	printf "\n Please add line"
	573	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	574	printf "\n to the configuration file."
	575	locat=localhost; exit
	576	fi
	577
	578
	579	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	580	case $localhost_realname in
	581	(breg-en0\|berni-en0) archive_system=tivoli;;
	582	(cs*) archive_system=ut;;
	583	(fimm.bccs.uib.no) fimm=true;;
	584	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	585	(hreg-en0\|hanni-en0) archive_system=tivoli;;
	586	(scirocco) scirocco=true;;
	587	esac
	588
	589
	590
[1]	591	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	592	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	593	[[ "$afname" = "" ]] && afname=$fname
	594
	595
	596	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	597	if [[ "$run_mode" != "" ]]
	598	then
	599	input_list="$input_list $run_mode"
	600	output_list="$output_list $run_mode"
	601	fi
	602
	603
	604	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	605	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	606	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	607	# STARTET)
	608	if [[ "$fromhost" = "" ]]
	609	then
	610	fromhost=$localhost
	611	fi
	612
	613
	614	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
	615	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
	616	then
	617	source_list=TEST
	618	local_compile=true
	619	host=$localhost
	620	fi
	621
	622
	623	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	624	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	625	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	626	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	627	if [[ -n $host && "$host" != $localhost ]]
	628	then
	629	do_batch=true
	630	do_remote=true
	631	case $host in
[251]	632	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4) true;;
[1]	633	(*) printf "\n"
[83]	634	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	635	printf "\n is not available"
[1]	636	locat=nqs; (( iec = 0 )); exit;;
	637	esac
	638	else
	639	host=$localhost
	640	fi
	641
	642
	643	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	644	if [[ -n $additional_conditions ]]
	645	then
[69]	646	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	647	cond1=`echo $additional_conditions \| cut -d" " -f1`
	648	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	649	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	650	if [[ -n $dummy ]]
	651	then
	652	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	653	locat=options; exit
	654	fi
	655	fi
	656
	657
[206]	658	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	659	if [[ $run_coupled_model = true ]]
	660	then
	661
	662	if [[ -n $coupled_dist ]]
	663	then
	664
	665	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	666	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	667
	668	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	669	then
	670
	671	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	672	printf "\n PEs (total) : $numprocs"
	673	printf "\n PEs (atmosphere): $numprocs_atmos"
	674	printf "\n PEs (ocean) : $numprocs_ocean"
	675	locat=coupling; exit
	676
	677	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
	678	# THIS SHOULD BE REMOVED IN FUTURE
	679	elif (( $numprocs_ocean != $numprocs_atmos ))
	680	then
	681
	682	printf "\n +++ currently only 1:1 topologies are supported"
	683	printf "\n PEs (total) : $numprocs"
	684	printf "\n PEs (atmosphere): $numprocs_atmos"
	685	printf "\n PEs (ocean) : $numprocs_ocean"
	686	(( numprocs_atmos = $numprocs / 2 ))
	687	(( numprocs_ocean = $numprocs / 2 ))
	688	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
	689
	690	fi
	691
	692	else
	693
	694	(( numprocs_ocean = $numprocs / 2 ))
	695	(( numprocs_atmos = $numprocs / 2 ))
	696
	697	fi
	698	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	699
	700	# GET coupled_mode FROM THE CONFIG FILE
	701	line=""
	702	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	703	while read line
	704	do
	705	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
	706	then
	707	coupled_mode="mpi2"
	708	fi
	709	done < tmp_mrun
	710
	711	fi
	712
	713
[1]	714	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	715	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	716	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	717	then
	718	if [[ $ignore_archive_error = false ]]
	719	then
	720	printf "\n +++ data archiving of previous run failed"
	721	printf "\n see directory \~/job_queue on remote machine"
	722	locat=archive; exit
	723	else
	724	printf "\n +++ warning: data archiving in a previous run failed"
	725	printf "\n MRUN continues, trying to get backup copy"
	726	fi
	727	fi
	728
	729
	730
	731	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	732	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	733	if [[ "$read_from_config" = false ]]
	734	then
	735
	736	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	737	while read zeile
	738	do
	739	[[ $silent = false ]] && printf "."
	740
	741
	742	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	743	# ERSETZEN
	744	eval zeile=\"$zeile\"
	745
	746
	747	# INTERPRETATION DER ZEILE
[21]	748	if [[ "$(echo $zeile)" = "" ]]
[1]	749	then
[21]	750	# LEERZEILE, KEINE AKTION
	751	continue
[1]	752
[21]	753	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	754	then
	755
[1]	756	# ZEILE IST KOMMENTARZEILE
	757	true
	758
	759	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	760	then
	761
	762	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	763	zeile=$(echo $zeile \| cut -c2-)
[69]	764	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	765	var=`echo $zeile \| cut -d" " -f1`
	766	value=`echo $zeile \| cut -d" " -s -f2`
	767	for_host=`echo $zeile \| cut -d" " -s -f3`
	768	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	769	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	770
	771	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	772	then
	773
	774	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	775	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	776	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	777
	778
	779	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	780	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	781	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	782	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	783	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	784	# KONFIGURATIONSDATEI
	785	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	786	then
	787	eval $var=\$value
	788
	789	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	790	if [[ $do_trace = true ]]
	791	then
	792	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	793	fi
	794	fi
	795
	796	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	797	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	798	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	799	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	800	if [[ $var = host ]]
	801	then
	802	if [[ -n $host && "$host" != $localhost ]]
	803	then
	804	do_batch=true
	805	do_remote=true
	806	case $host in
[251]	807	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4) true;;
[83]	808	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	809	printf "\n is not available"
[1]	810	locat=nqs; exit;;
	811	esac
	812	else
	813	host=$localhost
	814	fi
	815	fi
	816
	817	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	818	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	819	# DEN PROGRAMMEN BENOETIGT WERDEN
	820	export $var
	821	fi
	822
	823
	824
	825
	826	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	827	then
	828
	829	# ZEILE DEFINIERT ERROR-KOMMANDO
	830	(( iec = iec + 1 ))
	831	zeile=$(echo $zeile \| cut -c4-)
	832	err_command[$iec]="$zeile"
	833
	834	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	835	then
	836
	837	# ZEILE DEFINIERT INPUT-KOMMANDO
	838	(( iic = iic + 1 ))
	839	zeile=$(echo $zeile \| cut -c4-)
	840	in_command[$iic]="$zeile"
	841
	842	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	843	then
	844
	845	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	846	(( ioc = ioc + 1 ))
	847	zeile=$(echo $zeile \| cut -c4-)
	848	out_command[$ioc]="$zeile"
	849
	850	else
	851
	852	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	853	# s2a: in/out - Feld
	854	# s2b: loc - Feld (optional)
	855	# s2c: tr/ar - Feld (optional)
[69]	856	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	857	s1=`echo $zeile \| cut -d" " -f1`
	858	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	859	s2a=$(echo $s2 \| cut -d":" -f1)
	860	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	861	then
	862	s2b=""
	863	s2c=""
	864	else
[69]	865	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	866	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	867	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	868	fi
[69]	869	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	870	s3=`echo $zeile \| cut -d" " -f3`
	871	s4=`echo $zeile \| cut -d" " -s -f4`
	872	s5=`echo $zeile \| cut -d" " -s -f5`
	873	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	874
	875
	876	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	877	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	878	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	879	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	880	# HANDEN SEIN MUSS (D.H. s2b = loc)
	881	IFSALT="$IFS"; IFS="$IFS:"
	882	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	883	then
	884	found=false
	885	for actual in $input_list
	886	do
	887	for formal in $s3
	888	do
	889	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	890	done
	891	done
	892	if [[ $found = true ]]
	893	then
	894	(( iin = iin + 1 ))
	895	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	896	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	897	extin[$iin]=$s6
	898	fi
	899	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	900	then
	901	found=false
	902	for actual in $output_list
	903	do
	904	for formal in $s3
	905	do
	906	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	907	done
	908	done
	909	if [[ $found = true ]]
	910	then
	911	(( iout = iout + 1 ))
	912	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	913	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	914	fi
	915	elif [[ "$s2a" != in && "$s2a" != out ]]
	916	then
	917	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	918	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	919	locat=connect; exit
	920	fi
	921	IFS="$IFSALT"
	922	fi
	923	done < $config_file
	924
	925	else
	926
	927
	928	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	929	[[ $silent = false ]] && printf "..."
	930	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	931	export interpreted_config_file=.icf.$RANDOM
	932
	933
[69]	934
	935	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	936	# VERFUEGUNG STELLEN
	937	cat > .mrun_environment << %%END%%
	938	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	939	config_file = '$config_file', do_remote = '$do_remote',
	940	do_trace = '$do_trace', host = '$host',
	941	input_list = '$input_list', icf = '$interpreted_config_file',
	942	localhost = '$localhost', output_list = '$output_list' /
	943
	944	%%END%%
	945
	946	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	947	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	948	mrun_memory=$memory
[127]	949	mrun_group_number=$group_number
[69]	950	mrun_cpumax=$cpumax
	951	mrun_numprocs=$numprocs
	952
[251]	953	if [[ $localhost_realname = "sx-fep" ]]
[66]	954	then
[251]	955	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	956	else
	957	interpret_config.x
	958	fi
[71]	959	rm .mrun_environment
[1]	960
[71]	961
[1]	962	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	963	chmod u+x $interpreted_config_file
	964	export PATH=$PATH:.
	965	. $interpreted_config_file
[71]	966	rm $interpreted_config_file
[1]	967
[71]	968
[69]	969	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[71]	970	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	971	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[71]	972	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	973	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
[69]	974
[1]	975	fi
	976
	977
	978	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	979	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	980	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	981	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	982	if [[ "$SOURCES_COMPLETE" = "" ]]
	983	then
	984
	985	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	986	# VEREINBART WURDE
	987	source_path=""
	988	line=""
	989	grep "%source_path" $config_file > tmp_mrun
	990	while read line
	991	do
	992	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	993	then
	994	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	995	then
	996	global_source_path=`echo $line \| cut -d" " -f2`
	997	fi
	998	fi
	999	done < tmp_mrun
	1000
	1001	line=""
	1002	found=false
	1003	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	1004	while read line
	1005	do
	1006	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1007	then
	1008	if [[ $found = true ]]
	1009	then
	1010	printf "\n\n +++ more than one source path found in configuration file"
	1011	printf "\n for local host \"$localhost\" "
	1012	locat=source_path; exit
	1013	fi
	1014	source_path=`echo $line \| cut -d" " -f2`
	1015	found=true
	1016	fi
	1017	done < tmp_mrun
	1018	rm tmp_mrun
	1019
	1020	if [[ "$source_path" = "" ]]
	1021	then
	1022	if [[ "$global_source_path" != "" ]]
	1023	then
	1024	source_path=$global_source_path
	1025	else
	1026	printf "\n\n +++ no source path found in configuration file"
	1027	printf "\n for local host \"$localhost\" "
	1028	locat=source_path; exit
	1029	fi
	1030	fi
	1031	eval source_path=$source_path
	1032
	1033	if [[ ! -d $source_path ]]
	1034	then
	1035	printf "\n\n +++ source path \"$source_path\" on local host"
	1036	printf "\n \"$localhost\" does not exist"
	1037	locat=source_path; exit
	1038	fi
	1039
	1040	fi
	1041
	1042
[78]	1043	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	1044	# DURCH OPTION -G MITGETEILT)
	1045	if [[ "$global_revision" = "" ]]
	1046	then
	1047	global_revision=`svnversion $source_path 2>/dev/null`
	1048	global_revision="Rev: $global_revision"
	1049	fi
[1]	1050
[78]	1051
[1]	1052	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1053	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1054	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1055	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1056	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1057	if [[ -n $host && "$host" != $localhost ]]
	1058	then
	1059	do_batch=true
	1060	do_remote=true
	1061	case $host in
[251]	1062	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4) true;;
[1]	1063	(*) printf "\n"
[83]	1064	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1065	printf "\n is not available"
[1]	1066	locat=nqs; (( iec = 0 )); exit;;
	1067	esac
	1068	else
	1069	host=$localhost
	1070	fi
	1071
	1072
	1073	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1074	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1075	then
	1076
	1077	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1078	if [[ ! -n $numprocs ]]
	1079	then
	1080	printf "\n"
	1081	printf "\n +++ option \"-K parallel\" requires additional specification"
	1082	printf "\n of the number of processors to be used by"
	1083	printf "\n mrun-option \"-X\" or by environment-variable"
	1084	printf "\n \"numprocs\" in the configuration file"
	1085	locat=numprocs; (( iec = 0 )); exit
	1086	fi
	1087
	1088	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1089	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1090	# GESAMTPROZESSORANZAHL IST
[251]	1091	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
[1]	1092	then
	1093	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
	1094	(( ival = $tasks_per_node ))
	1095	(( pes = numprocs ))
	1096	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1097	# then
	1098	# (( pes = pes - 1 ))
	1099	# fi
	1100	(( ii = pes / ival ))
	1101	if (( pes - ii * ival > 0 ))
	1102	then
	1103	printf "\n"
	1104	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1105	printf "\n divisor of the total number of processors (option \"-X\")"
	1106	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1107	locat=tasks_per_node; (( iec = 0 )); exit
	1108	fi
	1109	fi
	1110
	1111	# IBMY HAT NUR EINEN KNOTEN
	1112	if [[ $host = ibmy ]]
	1113	then
	1114	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1115	then
	1116	printf "\n"
	1117	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1118	printf "\n total number of processors (option \"-X\")"
	1119	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1120	locat=tasks_per_node; (( iec = 0 )); exit
	1121	fi
	1122	fi
	1123
	1124	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
	1125	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
	1126	if [[ $use_openmp = true ]]
	1127	then
	1128	threads_per_task=$tasks_per_node
	1129	tasks_per_node=1
	1130	fi
	1131	OOPT="-O $threads_per_task"
	1132	TOPT="-T $tasks_per_node"
	1133
	1134	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1135	if [[ "$tasks_per_node" != "" ]]
	1136	then
	1137	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1138	fi
	1139
	1140	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1141	# SETZEN
	1142	if [[ $node_usage = default ]]
	1143	then
	1144	if [[ $host = ibms ]]
	1145	then
	1146	node_usage=shared
[118]	1147	elif [[ $host = lctit ]]
	1148	then
[265]	1149	node_usage=RAM64GB
[181]	1150	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1151	then
	1152	node_usage=singlejob
[1]	1153	else
	1154	node_usage=not_shared
	1155	fi
	1156	fi
[181]	1157
[265]	1158	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
[1]	1159	then
	1160	printf "\n"
	1161	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1162	printf "\n \"shared\" or \"not_shared\""
	1163	locat=tasks_per_node; (( iec = 0 )); exit
	1164	fi
	1165
	1166	fi
	1167
	1168	# PRUEFEN, OB HOSTFILE EXISTIERT
	1169	if [[ -n $hostfile ]]
	1170	then
	1171	if [[ ! -f $hostfile ]]
	1172	then
	1173	printf "\n"
	1174	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1175	locat=hostfile; exit
	1176	fi
	1177	fi
	1178
	1179	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1180	if [[ $host = ibmy && $do_remote = false ]]
	1181	then
	1182	if [[ ! -f $HOME/.rhosts ]]
	1183	then
	1184	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1185	printf "\n\n *** file:"
	1186	printf "\n $HOME/.rhosts"
	1187	printf "\n was created\n"
	1188	fi
	1189	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1190	then
	1191	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1192	printf "\n\n *** file:"
	1193	printf "\n $HOME/.rhosts"
	1194	printf "\n was extended by the name of the current host\n"
	1195	fi
	1196	fi
	1197
	1198
	1199
	1200	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1201	if [[ $queue = none ]]
	1202	then
	1203	case $host in
	1204	(ibmb) if [[ $node_usage = shared ]]
	1205	then
	1206	queue=cshare
	1207	else
	1208	queue=csolo
	1209	fi;;
[312]	1210	(ibmh) queue=no_class;;
[1]	1211	(ibmy) queue=parallel;;
[191]	1212	(lcsgib) queue=bigq;;
	1213	(lcsgih) queue=bigq;;
[265]	1214	(lctit) queue=RAM64GB;;
[1]	1215	(nech) queue=none;;
[253]	1216	(necriam) queue=SP;;
[1]	1217	(unics) queue=unics;;
	1218	esac
	1219	fi
	1220
	1221
	1222	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1223	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1224	# ERMITTELN
	1225	(( i = 0 ))
	1226	while (( i < iin ))
	1227	do
	1228	(( i = i + 1 ))
	1229	(( maxcycle = 0 ))
	1230
	1231	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1232	if [[ "${actionin[$i]}" = di ]]
	1233	then
	1234	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1235	# REM-MASCHINE AUSWERTEN
	1236	eval filename=${pathin[$i]}/${endin[$i]}
	1237	else
	1238	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1239	# REM-MASCHINE AUSWERTEN
	1240	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1241	fi
	1242
	1243	# PRUEFEN AUF VORHANDENSEIN
	1244	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1245	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1246	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1247	then
	1248	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1249	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1250	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1251	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1252	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1253	if [[ "${transin[$i]}" != "locopt" ]]
	1254	then
	1255	printf "\n\n +++ INPUT-file: "
	1256	if [[ "${extin[$i]}" = "" ]]
	1257	then
	1258	printf "\n $filename"
	1259	else
	1260	printf "\n $filename.${extin[$i]}"
	1261	fi
	1262	printf "\n does not exist\n"
	1263	locat=input; exit
	1264	else
	1265	transin[$i]="unavailable"
	1266	fi
	1267	else
	1268
	1269	# ZYKLUSNUMMER FESTSTELLEN
	1270	ls -1 -d $filename > filelist 2>/dev/null
	1271	ls -1 -d $filename.* >> filelist 2>/dev/null
	1272	while read zeile
	1273	do
	1274	cycle=$(print $zeile \| cut -f2 -d".")
	1275	if [[ "$cycle" = "$zeile" ]]
	1276	then
	1277	(( icycle = 0 ))
	1278	elif [[ "$cycle" = "${extin[$i]}" ]]
	1279	then
	1280	(( icycle = 0 ))
	1281	else
	1282	(( icycle = $cycle ))
	1283	fi
	1284	if (( icycle > maxcycle ))
	1285	then
	1286	(( maxcycle = icycle ))
	1287	file_to_be_used=$zeile
	1288	fi
	1289	done <filelist
	1290	rm filelist
	1291
	1292	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1293	if (( maxcycle > 0 ))
	1294	then
	1295	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1296	then
	1297	filename=${filename}.$maxcycle.${extin[$i]}
	1298	else
	1299	filename=${filename}.$maxcycle
	1300	fi
	1301	else
	1302	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1303	then
	1304	filename=${filename}.${extin[$i]}
	1305	fi
	1306	fi
	1307
	1308	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1309	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1310	absnamein[$i]=$filename
	1311	if (( maxcycle > 0 ))
	1312	then
	1313	if [[ "${actionin[$i]}" = di ]]
	1314	then
	1315	frelin[$i]=${endin[$i]}.$maxcycle
	1316	else
	1317	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1318	fi
	1319	else
	1320	if [[ "${actionin[$i]}" = di ]]
	1321	then
	1322	frelin[$i]=${endin[$i]}
	1323	else
	1324	frelin[$i]=${afname}${endin[$i]}
	1325	fi
	1326	fi
	1327
	1328	fi
	1329	done
	1330
	1331
	1332	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1333	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1334	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1335	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1336	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1337	(( i = 0 ))
	1338	while (( i < iout ))
	1339	do
	1340	(( i = i + 1 ))
	1341	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1342	then
[260]	1343	if [[ "${actionout[$i]}" = tr ]]
[1]	1344	then
	1345	actionout[$i]=""
[260]	1346	elif [[ "${actionout[$i]}" = trpe ]]
	1347	then
	1348	actionout[$i]=pe
[1]	1349	elif [[ "${actionout[$i]}" = tra ]]
	1350	then
	1351	actionout[$i]=a
	1352	fi
	1353	(( maxcycle = 0 ))
	1354	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1355	eval catalogname=${pathout[$i]}
	1356	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1357	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1358	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1359	then
	1360
	1361	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1362	if cat /dev/null > $filename
	1363	then
	1364	rm $filename
	1365	else
	1366
	1367	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1368	if [[ ! -d $catalogname ]]
	1369	then
	1370	if mkdir -p $catalogname
	1371	then
	1372	printf "\n\n *** directory:"
	1373	printf "\n $catalogname"
	1374	printf "\n was created\n"
	1375	else
	1376	printf "\n\n +++ OUTPUT-file:"
	1377	printf "\n $filename"
	1378	printf "\n cannot be created, because directory does not exist"
	1379	printf "\n and cannot be created either"
	1380	printf "\n"
	1381	locat=output ; exit
	1382	fi 2>/dev/null
	1383	else
	1384	printf "\n\n +++ OUTPUT-file:"
	1385	printf "\n $filename"
	1386	printf "\n cannot be created, although directory exists"
	1387	printf "\n"
	1388	locat=output ; exit
	1389	fi
	1390	fi 2>/dev/null
	1391	else
	1392
	1393	# ZYKLUSNUMMER FESTSTELLEN
	1394	ls -1 -d $filename > filelist 2>/dev/null
	1395	ls -1 -d $filename.* >> filelist 2>/dev/null
	1396	while read zeile
	1397	do
	1398	cycle=$(print $zeile \| cut -f2 -d".")
	1399	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1400	then
	1401	(( icycle = 1 ))
	1402	else
	1403	(( icycle = $cycle + 1 ))
	1404	fi
	1405	if (( icycle > maxcycle ))
	1406	then
	1407	(( maxcycle = icycle ))
	1408	fi
	1409	done <filelist
	1410	rm filelist
	1411	fi
	1412
	1413	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1414	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1415	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1416	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1417	if [[ "${actionout[$i]}" != a ]]
	1418	then
	1419	if (( maxcycle > 0 ))
	1420	then
	1421	filename=${filename}.$maxcycle
	1422	if cat /dev/null > $filename
	1423	then
	1424	rm $filename
	1425	else
	1426	printf "\n +++ OUTPUT-file:"
	1427	printf "\n $filename"
	1428	printf "\n cannot be created"
	1429	locat=output ; exit
	1430	fi
	1431	fi
	1432	else
	1433	(( maxcycle = maxcycle - 1 ))
	1434	if (( maxcycle > 0 ))
	1435	then
	1436	filename=${filename}.$maxcycle
	1437	fi
	1438	fi
	1439
	1440	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1441	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1442	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1443	pathout[$i]=$filename
	1444	if (( maxcycle > 0 ))
	1445	then
	1446	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1447	else
	1448	frelout[$i]=${fname}${endout[$i]}
	1449	fi
	1450
	1451	fi
	1452	done
	1453
	1454
[260]	1455	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1456	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1457	then
[260]	1458	if [[ "$dvr_inc" = "" ]]
[83]	1459	then
[260]	1460	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1461	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1462	locat=dvr; exit
[83]	1463	fi
[260]	1464	if [[ "$dvr_lib" = "" ]]
[83]	1465	then
[260]	1466	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1467	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1468	locat=dvr; exit
[83]	1469	fi
	1470	fi
	1471
	1472
[1]	1473	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1474	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1475	# UEBERSETZT ZU WERDEN)
	1476	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1477	then
	1478	printf "\n +++ neither main program nor executable defined"
	1479	locat=source; exit
	1480	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1481	then
	1482	printf "\n +++ main program as well as executable defined"
	1483	locat=source; exit
	1484	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1485	then
	1486	do_compile=false
	1487	fi
	1488
	1489
[191]	1490	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1491	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1492	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1493	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1494	then
	1495	rm -rf SOURCES_FOR_RUN_$fname
	1496	mkdir SOURCES_FOR_RUN_$fname
	1497	fi
	1498
	1499
[1]	1500	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1501	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1502	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1503	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1504	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1505	then
	1506
[5]	1507	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
	1508	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
[1]	1509
	1510
	1511	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
	1512	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
	1513	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
	1514	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
	1515	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
	1516	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
	1517	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
	1518	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
	1519	# GESAMMELT
[5]	1520	if [[ "$source_list" = WRITE_PERMIT ]]
[1]	1521	then
	1522
	1523	source_list=""
	1524	cd $source_path
	1525
	1526
	1527	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
	1528	Names=$(ls -1 *.f90 2>&1)
	1529	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
	1530	Names=$(ls -1 *.F90 2>&1)
	1531	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
	1532	Names=$(ls -1 *.F 2>&1)
	1533	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
	1534	Names=$(ls -1 *.f 2>&1)
	1535	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
	1536	Names=$(ls -1 *.c 2>&1)
	1537	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
	1538
	1539
	1540	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
	1541	for dateiname in $Filenames
	1542	do
	1543	if [[ -w $dateiname ]]
	1544	then
	1545	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
	1546	then
	1547	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1548	source_list=$source_list"$dateiname "
	1549	fi
	1550	fi
	1551	done
	1552
	1553	cd - > /dev/null
	1554
	1555
[5]	1556	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
	1557	then
	1558
	1559	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1560	source_list=""
	1561	cd $source_path
	1562
	1563
	1564	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1565	if [[ ! -d .svn ]]
	1566	then
	1567	printf "\n\n +++ source directory"
	1568	printf "\n \"$source_path\" "
	1569	printf "\n is not under control of \"subversion\"."
[306]	1570	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1571	fi
	1572
	1573
	1574	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1575	Filenames=""
[69]	1576	svn status > tmp_mrun
	1577	while read line
[5]	1578	do
	1579	firstc=`echo $line \| cut -c1`
	1580	if [[ $firstc = M \|\| $firstc = "?" ]]
	1581	then
	1582	Name=`echo "$line" \| cut -c8-`
	1583	extension=`echo $Name \| cut -d. -f2`
	1584	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1585	then
	1586	Filenames="$Filenames "$Name
	1587	fi
	1588	fi
[69]	1589	done < tmp_mrun
[5]	1590
	1591
	1592	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1593	for dateiname in $Filenames
	1594	do
	1595	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1596	source_list=$source_list"$dateiname "
	1597	done
	1598
	1599	cd - > /dev/null
	1600
	1601
[1]	1602	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1603	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1604	# VORHANDEN
[5]	1605	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1606	then
	1607
	1608	cd $source_path
	1609
	1610	for filename in $source_list
	1611	do
	1612
	1613	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1614	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1615	then
	1616	printf "\n +++ source code file: $filename"
	1617	printf "\n must not contain (\"/\") "
	1618	locat=source; exit
	1619	fi
	1620
	1621	if [[ ! -f $filename ]]
	1622	then
	1623	printf "\n +++ source code file: $filename"
	1624	printf "\n does not exist"
	1625	locat=source; exit
	1626	else
	1627	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1628	fi
	1629
	1630	done
	1631
	1632	cd - > /dev/null
	1633
	1634	fi
	1635
	1636
	1637	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1638	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1639	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1640	if [[ $restart_run != true ]]
[1]	1641	then
	1642
	1643	if [[ ! -f "$source_path/$mainprog" ]]
	1644	then
	1645	printf "\n\n +++ main program: $mainprog"
	1646	printf "\n does not exist in source directory"
	1647	printf "\n \"$source_path\"\n"
	1648	locat=source; exit
	1649	else
	1650	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1651	then
	1652	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1653	source_list=${mainprog}" $source_list"
	1654	fi
	1655	fi
	1656	fi
	1657
	1658
[211]	1659	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1660	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1661	if [[ "$restart_run" != true ]]
	1662	then
	1663	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1664	if [[ ! -f $makefile ]]
	1665	then
	1666	printf "\n +++ file \"$makefile\" does not exist"
	1667	locat=make; exit
	1668	else
	1669	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1670	fi
	1671	fi
	1672
	1673
[1]	1674	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1675	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1676	then
	1677
	1678	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1679	if [[ ! -d $add_source_path ]]
	1680	then
	1681	printf "\n\n +++ WARNING: additional source code directory"
	1682	printf "\n \"$add_source_path\" "
	1683	printf "\n does not exist or is not a directory."
	1684	printf "\n No source code will be used from this directory!\n"
	1685	add_source_path=""
	1686	sleep 3
	1687	else
	1688
	1689	cd $add_source_path
[211]	1690	found=false
[1]	1691
	1692	Names=$(ls -1 *.f90 2>&1)
	1693	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1694	Names=$(ls -1 *.F90 2>&1)
	1695	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1696	Names=$(ls -1 *.F 2>&1)
	1697	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1698	Names=$(ls -1 *.f 2>&1)
	1699	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1700	Names=$(ls -1 *.c 2>&1)
	1701	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1702
	1703	cd - > /dev/null
	1704	cd SOURCES_FOR_RUN_$fname
	1705
[211]	1706	# COPY MAKEFILE IF EXISTING
	1707	if [[ -f $add_source_path/Makefile ]]
	1708	then
	1709	printf "\n\n *** user Makefile from directory"
	1710	printf "\n \"$add_source_path\" is used \n"
	1711	sleep 1
	1712	cp $add_source_path/Makefile .
	1713	fi
	1714
[1]	1715	for dateiname in $AddFilenames
	1716	do
	1717	if [[ -f $dateiname ]]
	1718	then
	1719	printf "\n +++ source code file \"$dateiname\" found in additional"
	1720	printf "\n source code directory \"$add_source_path\" "
[211]	1721	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1722	printf "\n from directory \"$source_path\"."
[1]	1723	locat=source; exit
	1724	fi
	1725
	1726	cp $add_source_path/$dateiname .
	1727	source_list="$source_list $dateiname"
	1728
[211]	1729	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1730	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1731	then
	1732	printf "\n\n +++ user file \"$dateiname\" "
	1733	printf "\n is not listed in Makefile \n"
	1734	locat=source; exit
	1735	else
	1736
[1]	1737	# Default User-Interface von der Liste entfernen, falls Datei
	1738	# ein User-Interface enthaelt
[211]	1739	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1740	# then
	1741	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1742	# then
	1743	# rm -rf user_interface.f90
	1744	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1745	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1746	# printf "\n since a user-interface is found in file"
	1747	# printf "\n \"$add_source_path/$dateiname\" \n"
	1748	# sleep 3
	1749	# else
	1750	if [[ $found = false ]]
[1]	1751	then
[211]	1752	found=true
	1753	printf "\n\n *** following user file(s) added to the"
	1754	printf " files to be translated:\n "
[1]	1755	fi
[211]	1756	printf "$dateiname "
	1757	sleep 0.5
[1]	1758	fi
	1759	done
[211]	1760	[[ $found = true ]] && printf "\n"
[1]	1761	cd - > /dev/null
	1762	fi
	1763	fi
	1764
	1765
	1766	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1767	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1768	if [[ $restart_run != true && -n $package_list ]]
[1]	1769	then
	1770
	1771	cd $source_path
	1772
	1773	for package in $package_list
	1774	do
	1775
	1776	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1777
	1778	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1779	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1780	# LIEFERT
	1781	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1782
	1783
	1784	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1785	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1786	for source_list_name in $package_source_list
	1787	do
	1788	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1789	then
	1790
	1791	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1792	ending=`echo $source_list_name \| cut -f2 -d.`
	1793	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1794	then
	1795	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1796	source_list="$source_list $source_list_name"
	1797	fi
	1798	fi
	1799	done
	1800	done
	1801
	1802	cd - > /dev/null
	1803	fi
	1804
	1805
	1806	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1807	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1808	# if [[ "$restart_run" != true ]]
	1809	# then
	1810	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1811	# if [[ ! -f $makefile ]]
	1812	# then
	1813	# printf "\n +++ file \"$makefile\" does not exist"
	1814	# locat=make; exit
	1815	# else
	1816	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1817	# fi
	1818	# fi
[1]	1819
	1820	fi # do_compile=true
	1821
	1822
	1823	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1824	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1825	if [[ $do_compile = true ]]
	1826	then
	1827
	1828	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1829	# ZUSAMMENSETZEN
[83]	1830	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1831	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1832	then
[82]	1833	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1834	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1835	then
[82]	1836	cpp_options="$cpp_options -D__nec"
	1837	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1838	then
	1839	cpp_options="$cpp_options -D__lc"
[1]	1840	else
[82]	1841	cpp_options="$cpp_options -D__$localhost"
[1]	1842	fi
[83]	1843
	1844	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1845	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1846	then
[82]	1847	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1848	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1849	else
[82]	1850	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1851	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1852	fi
[83]	1853
	1854	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1855	if [[ -n $package_list ]]
	1856	then
	1857	for package in $package_list
	1858	do
	1859	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1860	then
	1861	if [[ $package != "dvrp_graphics+1PE" ]]
	1862	then
[82]	1863	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1864	else
[82]	1865	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1866	export use_seperate_pe_for_dvrp_output=true
	1867	fi
	1868	else
	1869	if [[ $package != "dvrp_graphics+1PE" ]]
	1870	then
[82]	1871	cpp_options="$cpp_options -D__$package"
[1]	1872	else
[82]	1873	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1874	export use_seperate_pe_for_dvrp_output=true
	1875	fi
	1876	fi
	1877	done
	1878	fi
[83]	1879
	1880	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1881	if [[ -n $cpp_opts ]]
	1882	then
	1883	for popts in $cpp_opts
	1884	do
[82]	1885	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1886	then
	1887	cpp_options="${cpp_options},-D__$popts=__$popts"
	1888	else
	1889	cpp_options="$cpp_options -D__$popts"
	1890	fi
[1]	1891	done
	1892	fi
	1893
	1894	else
	1895
	1896
	1897	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1898	if [[ $do_remote = false ]]
	1899	then
	1900	if [[ ! -f $executable ]]
	1901	then
	1902	printf "\n +++ executable file: $executable"
	1903	printf "\n does not exist"
	1904	locat=executable; exit
	1905	fi
	1906	fi
	1907	fi
	1908
	1909
	1910	# JOBMODUS FESTSTELLEN
	1911	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
	1912	then
	1913	jobmo=BATCH
	1914	else
	1915	jobmo=INTERACTIVE
	1916	fi
	1917
	1918
	1919	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1920	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1921	if [[ "$compiler_name" = "" ]]
	1922	then
[82]	1923
[220]	1924	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1925	locat=compiler_name; exit
	1926
[1]	1927	fi
	1928
	1929
[251]	1930	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	1931	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	1932
	1933
	1934
	1935	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	1936	kennung=$RANDOM
	1937	if [[ "$tmp_user_catalog" = "" ]]
	1938	then
[312]	1939	if [[ $localhost = ibmh ]]
[1]	1940	then
[312]	1941	tmp_user_catalog=$SCRATCH
[1]	1942	elif [[ $localhost = nech ]]
	1943	then
	1944	tmp_user_catalog=$WRKSHR
	1945	else
	1946	tmp_user_catalog=/tmp
	1947	fi
	1948	fi
	1949	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	1950
	1951
	1952	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	1953	# BESTIMMEN
	1954	if [[ "$tmp_data_catalog" = "" ]]
	1955	then
[312]	1956	if [[ $localhost = ibmb ]]
[1]	1957	then
	1958	tmp_data_catalog=$WORK/mrun_restart_data
	1959	elif [[ $localhost = nech ]]
	1960	then
	1961	tmp_data_catalog=$WRKSHR/mrun_restart_data
	1962	else
	1963	tmp_data_catalog=/tmp/mrun_restart_data
	1964	fi
	1965	fi
	1966
	1967
	1968	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	1969	# ERSETZEN
	1970	if [[ $do_remote = false && $do_compile = true ]]
	1971	then
	1972	eval fopts=\"$fopts\"
	1973	eval lopts=\"$lopts\"
	1974	fi
	1975
	1976
	1977
	1978	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	1979	fopts="$fopts $netcdf_inc $dvr_inc"
	1980	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	1981	ROPTS="$ropts"
[179]	1982	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 ) && -n $numprocs ]]
[1]	1983	then
	1984	XOPT="-X $numprocs"
	1985	fi
	1986
	1987
	1988
	1989	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	1990	# GRAMM BENOETIGT
	1991	done=false
	1992	while [[ $done = false ]]
	1993	do
	1994	cputime=$cpumax
	1995	if (( $cputime == 0 ))
	1996	then
[246]	1997	if [[ $do_batch = true ]]
	1998	then
	1999	printf "\n +++ cpu-time is undefined"
	2000	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	2001	printf "\n >>> "
	2002	read cputime 1>/dev/null 2>&1
	2003	else
	2004	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	2005	fi
[1]	2006	else
	2007	done=true
	2008	fi
	2009	cpumax=$cputime
	2010	done
	2011
	2012	(( minuten = cputime / 60 ))
	2013	(( sekunden = cputime - minuten * 60 ))
	2014
	2015
	2016	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	2017	if [[ $do_batch = true ]]
	2018	then
	2019	done=false
	2020	while [[ $done = false ]]
	2021	do
	2022	if (( memory == 0 ))
	2023	then
	2024	printf "\n +++ memory demand is undefined"
	2025	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	2026	printf "\n >>> "
	2027	read memory 1>/dev/null 2>&1
	2028	else
	2029	done=true
	2030	fi
	2031	done
	2032	fi
	2033
	2034
	2035	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	2036	if [[ $do_remote = true && -z $remote_username ]]
	2037	then
	2038	while [[ -z $remote_username ]]
	2039	do
	2040	printf "\n +++ username on remote host \"$host\" is undefined"
	2041	printf "\n >>> Please type username:"
	2042	printf "\n >>> "
	2043	read remote_username
	2044	done
	2045	mc="$mc -u$remote_username"
	2046	fi
	2047
[221]	2048
	2049	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2050	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2051	then
	2052	[[ "$mpilib" = "" ]] && export mpilib=mpt
	2053	fi
	2054
	2055
	2056
[1]	2057	###########################################################################
	2058	# HEADER-AUSGABE
	2059	###########################################################################
	2060
	2061
	2062	calltime=$(date)
	2063	printf "\n"
	2064	# [[ $silent = false ]] && clear
	2065	printf "#--------------------------------------------------------------# \n"
	2066	printf "\| $version$calltime \| \n"
	2067	printf "\| \| \n"
	2068	spalte1="called on:"; spalte2=$localhost_realname
	2069	printf "\| $spalte1$spalte2 \| \n"
	2070	if [[ $local_compile = false ]]
	2071	then
	2072	if [[ $do_remote = true ]]
	2073	then
	2074	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2075	else
	2076	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2077	fi
	2078	else
	2079	spalte1="compiling test only!"; spalte2=""
	2080	fi
	2081	printf "\| $spalte1$spalte2 \| \n"
	2082	if [[ -n $numprocs ]]
	2083	then
	2084	spalte1="number of PEs:"; spalte2=$numprocs
	2085	printf "\| $spalte1$spalte2 \| \n"
	2086	fi
	2087	if [[ -n $tasks_per_node ]]
	2088	then
	2089	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	2090	printf "\| $spalte1$spalte2 \| \n"
	2091	fi
	2092	if [[ $threads_per_task != 1 ]]
	2093	then
	2094	spalte1="threads per task:"; spalte2="$threads_per_task"
	2095	printf "\| $spalte1$spalte2 \| \n"
	2096	fi
	2097	printf "\| \| \n"
	2098	if [[ $do_compile = true ]]
	2099	then
[82]	2100	spalte1=cpp-directives:; spalte2=$cpp_options
[1]	2101	printf "\| $spalte1$spalte2 \| \n"
[82]	2102	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2103	while [[ "$zeile" != "" ]]
	2104	do
	2105	spalte1=""
	2106	spalte2=$zeile
	2107	printf "\| $spalte1$spalte2 \| \n"
	2108	zeile=$(echo "$zeile" \| cut -c41-)
	2109	done
	2110
[82]	2111	spalte1=compiler-options:; spalte2="$fopts"
[1]	2112	printf "\| $spalte1$spalte2 \| \n"
[82]	2113	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2114	while [[ "$zeile" != "" ]]
	2115	do
	2116	spalte1=""
	2117	spalte2=$zeile
	2118	printf "\| $spalte1$spalte2 \| \n"
	2119	zeile=$(echo "$zeile" \| cut -c41-)
	2120	done
	2121
[82]	2122	spalte1=linker-options:; spalte2=$lopts
[1]	2123	printf "\| $spalte1$spalte2 \| \n"
[82]	2124	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2125	while [[ "$zeile" != "" ]]
	2126	do
	2127	spalte1=""
	2128	spalte2=$zeile
	2129	printf "\| $spalte1$spalte2 \| \n"
	2130	zeile=$(echo "$zeile" \| cut -c41-)
	2131	done
	2132
	2133	spalte1="main program":; spalte2=$mainprog
	2134	printf "\| $spalte1$spalte2 \| \n"
	2135	else
	2136	spalte1=executable:; spalte2=$executable
	2137	printf "\| $spalte1$spalte2 \| \n"
	2138	fi
	2139	printf "\| \| \n"
	2140	spalte1="base name of files":; spalte2=$fname
	2141	printf "\| $spalte1$spalte2 \| \n"
	2142	if [[ $fname != $afname ]]
	2143	then
	2144	spalte1="base name of input files":; spalte2=$afname
	2145	printf "\| $spalte1$spalte2 \| \n"
	2146	fi
	2147	spalte1="INPUT control list":; spalte2=$input_list
	2148	printf "\| $spalte1$spalte2 \| \n"
	2149	spalte1="OUTPUT control list":; spalte2=$output_list
	2150	printf "\| $spalte1$spalte2 \| \n"
	2151
	2152	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2153	then
	2154	spalte1="memory demand / PE":; spalte2="$memory MB"
	2155	printf "\| $spalte1$spalte2 \| \n"
	2156	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2157	printf "\| $spalte1$spalte2 \| \n"
	2158	fi
	2159
	2160	if [[ $do_compile = true ]]
	2161	then
	2162	printf "\| \| \n"
	2163	printf "\| Files to be compiled: \| \n"
	2164	zeile=$source_list
	2165	while [[ "$zeile" != "" ]]
	2166	do
	2167	spalte3=$zeile
	2168	printf "\| $spalte3 \| \n"
	2169	zeile=$(echo "$zeile" \| cut -c61-)
	2170	done
	2171	fi
	2172	printf "#--------------------------------------------------------------#"
	2173
	2174
	2175
	2176	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2177	if [[ $do_trace = true ]]
	2178	then
	2179	(( i = 0 ))
	2180	while (( i < iin ))
	2181	do
	2182	(( i = i + 1 ))
	2183	if (( i == 1 ))
	2184	then
	2185	printf "\n\n >>> INPUT-file assignments:\n"
	2186	fi
	2187	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2188	done
	2189	(( i = 0 ))
	2190	while (( i < iout ))
	2191	do
	2192	(( i = i + 1 ))
	2193	if (( i == 1 ))
	2194	then
	2195	printf "\n\n >>> OUTPUT-file assignments:\n"
	2196	fi
	2197	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2198	done
	2199	(( i = 0 ))
	2200	while (( i < iic ))
	2201	do
	2202	(( i = i + 1 ))
	2203	if (( i == 1 ))
	2204	then
	2205	printf "\n\n >>> INPUT-commands:\n"
	2206	fi
	2207	printf "\n ${in_command[$i]}"
	2208	done
	2209	(( i = 0 ))
	2210	while (( i < ioc ))
	2211	do
	2212	(( i = i + 1 ))
	2213	if (( i == 1 ))
	2214	then
	2215	printf "\n\n >>> OUTPUT-commands:\n"
	2216	fi
	2217	printf "\n ${out_command[$i]}"
	2218	done
	2219	fi
	2220
	2221
	2222	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2223	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2224	then
	2225	antwort=dummy
	2226	printf "\n\n"
	2227	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2228	do
	2229	printf " >>> everything o.k. (y/n) ? "
	2230	read antwort
	2231	done
	2232	if [[ $antwort = n \|\| $antwort = N ]]
	2233	then
	2234	locat=user_abort; (( iec = 0 )); exit
	2235	fi
	2236	if [[ $do_batch = true ]]
	2237	then
	2238	printf " >>> batch-job will be created and submitted"
	2239	else
	2240	if [[ $local_compile = false ]]
	2241	then
	2242	printf " >>> MRUN will now continue to execute on this machine"
	2243	else
	2244	printf " >>> a test compilation will now be carried out on this machine"
	2245	fi
	2246	fi
	2247	fi
	2248
	2249
	2250
	2251
	2252	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2253	# CHENDE AKTIONEN DURCHGEFUEHRT
	2254	if [[ $do_batch = false ]]
	2255	then
	2256
	2257
	2258	# TEMPORAEREN KATALOG ERZEUGEN
	2259	mkdir -p $TEMPDIR
	2260	chmod go+rx $TEMPDIR
	2261	tmpcreate=true
	2262
	2263
	2264	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2265	# TEMPORAERES VERZEICHNIS KOPIEREN
	2266	if [[ $do_compile = true ]]
	2267	then
	2268
	2269	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2270	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2271	if [[ $localhost = nech ]]
	2272	then
	2273	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2274	if mkdir -p $TEMPDIR_COMPILE
	2275	then
	2276	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2277	printf "\n is generated as temporary directory for cross compiling\n"
	2278	else
	2279	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2280	printf "\n needed for cross compilation failed"
	2281	locat=compile
	2282	exit
	2283	fi
	2284	else
	2285	TEMPDIR_COMPILE=$TEMPDIR
	2286	fi
	2287
	2288
[82]	2289	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2290	line=""
	2291	grep "%depository_path" $config_file > tmp_mrun
	2292	while read line
	2293	do
	2294	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2295	then
	2296	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2297	then
[82]	2298	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2299	fi
[82]	2300	fi
	2301	done < tmp_mrun
[1]	2302
[82]	2303	line=""
	2304	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2305	while read line
	2306	do
	2307	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2308	then
[211]	2309	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2310	then
	2311	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2312	fi
[1]	2313	fi
[82]	2314	done < tmp_mrun
[1]	2315
[82]	2316	if [[ "$local_depository_path" = "" ]]
	2317	then
	2318	if [[ "$global_depository_path" != "" ]]
[1]	2319	then
[82]	2320	local_depository_path=$global_depository_path
[1]	2321	else
[82]	2322	printf "\n\n +++ no depository path found in configuration file"
	2323	printf "\n for local host \"$localhost\" "
	2324	printf "\n please set \"\%depository_path\" in configuration file\n"
	2325	locat=config_file; exit
[1]	2326	fi
[82]	2327	fi
	2328	eval local_depository_path=$local_depository_path
[215]	2329	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2330	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2331
[215]	2332
[82]	2333	basename=`print $mainprog \| cut -f1 -d"."`
	2334	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2335	if [[ ! -f $make_depository ]]
	2336	then
	2337	printf "\n"
	2338	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2339	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2340	else
	2341	cp $make_depository $TEMPDIR_COMPILE
[1]	2342	cd $TEMPDIR_COMPILE
[82]	2343	tar -xf $make_depository > /dev/null 2>&1
[1]	2344	cd - > /dev/null
	2345	fi
[82]	2346
	2347	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2348
	2349	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
	2350	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
	2351	# MAKEFILE EINTRAGEN
[211]	2352	# cd $TEMPDIR_COMPILE
	2353	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
	2354	# if [[ "$interface_file" != "" ]]
	2355	# then
	2356	# interface_file=`echo $interface_file \| cut -d"." -f1`
	2357	# mv Makefile Makefile_old
	2358	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
	2359	# fi
	2360	# cd - > /dev/null
[1]	2361	else
	2362	cp $executable ${TEMPDIR}/a.out
	2363	fi
	2364
	2365
	2366	# WECHSEL IN TEMPORAEREN KATALOG
	2367	cd $TEMPDIR
	2368	printf "\n *** changed to temporary directory: $TEMPDIR"
	2369
	2370
	2371	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2372	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2373	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2374	# ERMITTELN
	2375	(( i = 0 ))
	2376	while (( i < iout ))
	2377	do
	2378	(( i = i + 1 ))
	2379	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2380	then
	2381	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2382	else
	2383	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2384	fi
	2385	done
	2386
	2387
	2388	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2389	if [[ $do_compile = true ]]
	2390	then
	2391
	2392
	2393	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2394	printf "\n\n\n *** compilation starts \n$striche\n"
	2395	printf " *** compilation with make using following options:\n"
[211]	2396	printf " make depository: $make_depository"
[82]	2397	printf " compilername: $compiler_name\n"
	2398	printf " options: $fopts\n"
	2399	printf " preprocessor-directives: $cpp_options \n"
	2400	printf " linker-options: $lopts \n"
	2401	printf " source code files: $source_list \n"
	2402
	2403	if [[ $localhost = nech ]]
[1]	2404	then
[82]	2405	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2406	cp $TEMPDIR_COMPILE/a.out .
	2407	[[ $? != 0 ]] && compile_error=true
	2408	rm -rf $TEMPDIR_COMPILE
[312]	2409	elif [[ $localhost = ibmh ]]
	2410	then
[325]	2411	printf " compiler is called via ssh on \"plogin1\" \n"
	2412	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[312]	2413	[[ ! -f a.out ]] && compile_error=true
	2414	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[197]	2415	elif [[ $localhost = lcsgib ]]
	2416	then
[221]	2417	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
[291]	2418	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2419	[[ ! -f a.out ]] && compile_error=true
	2420	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2421	elif [[ $localhost = lcsgih ]]
	2422	then
[221]	2423	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
	2424	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2425	[[ ! -f a.out ]] && compile_error=true
	2426	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2427	else
[118]	2428	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
[82]	2429	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	2430	fi
[1]	2431
	2432	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2433	then
	2434	printf "\n +++ error occured while compiling or linking"
	2435	locat=compile
[181]	2436
[182]	2437	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2438	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2439	# then
[181]	2440	exit
[197]	2441	# else
	2442	# locat=normal
	2443	# fi
[1]	2444	else
	2445	printf "$striche\n *** compilation finished \n"
	2446	fi
	2447	fi
	2448
	2449
	2450	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2451	if [[ $local_compile = true ]]
	2452	then
	2453	cd $HOME
	2454	rm -rf $TEMPDIR
	2455	locat=local_compile; exit
	2456	fi
	2457
	2458
	2459	# BEREITSTELLEN DER INPUT-DATEIEN
	2460	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2461	(( i = 0 ))
	2462	while (( i < iin ))
	2463	do
	2464	(( i = i + 1 ))
	2465	if (( i == 1 ))
	2466	then
	2467	printf "\n\n *** providing INPUT-files:\n$striche"
	2468	fi
	2469
	2470
	2471	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2472	if [[ "${transin[$i]}" = unavailable ]]
	2473	then
	2474	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2475	then
	2476	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2477	printf "\n is not available!"
	2478	else
	2479	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2480	printf "\n is not available!"
	2481	fi
	2482	continue
	2483	fi
	2484
	2485	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2486	files_for_pes=false; datentyp=file
	2487	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2488	then
	2489	files_for_pes=true; datentyp=directory
	2490	actionin[$i]=""
	2491	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2492	then
	2493	actionin[$i]=""
	2494	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2495	then
	2496	files_for_pes=true; datentyp=directory
	2497	actionin[$i]="ar"
	2498	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2499	then
	2500	actionin[$i]="ar"
	2501	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2502	then
	2503	files_for_pes=true; datentyp=directory
	2504	actionin[$i]="fl"
	2505	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2506	then
	2507	actionin[$i]="fl"
	2508	fi
	2509
	2510	if [[ $files_for_pes = true ]]
	2511	then
	2512	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2513	else
	2514	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2515	fi
	2516
	2517	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2518	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2519	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2520	# SERVER ZU HOLEN
	2521	if [[ "${actionin[$i]}" = fl ]]
	2522	then
	2523	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2524	if [[ $files_for_pes = false ]]
	2525	then
	2526	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2527	then
	2528	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2529	got_tmp[$i]=true
	2530	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2531	then
	2532	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2533	printf "\n *** trying to use backup copy in \"$WORK\" "
	2534	cp $WORK/${frelin[$i]} ${localin[$i]}
	2535	else
	2536	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2537	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2538	printf "\n *** trying to get copy from archive"
	2539	actionin[$i]=ar
	2540	fi
	2541	else
	2542	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2543	then
	2544	mkdir ${localin[$i]}
[149]	2545	cd $tmp_data_catalog/${frelin[$i]}
	2546	for file in $(ls *)
	2547	do
	2548	ln $file $TEMPDIR/${localin[$i]}
	2549	done
	2550	cd $TEMPDIR
[1]	2551	got_tmp[$i]=true
	2552	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2553	then
	2554	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2555	printf "\n *** trying to use backup copy in \"$WORK\" "
	2556	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2557	else
	2558	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2559	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2560	printf "\n *** trying to get copy from archive"
	2561	actionin[$i]=ar
	2562	fi
	2563	fi
	2564	fi
	2565
	2566
	2567	# DATEI LIEGT AUF ARCHIV-SERVER
	2568	if [[ "${actionin[$i]}" = ar ]]
	2569	then
	2570
	2571	if [[ $files_for_pes = false ]]
	2572	then
	2573	printf "\n file will be restored from archive-system ($archive_system)!"
	2574	else
	2575	printf "\n directory will be restored from archive-system ($archive_system)!"
	2576	fi
	2577
	2578	file_restored=false
	2579
	2580	if [[ $archive_system = asterix ]]
	2581	then
	2582	do_stagein=true
	2583	(( stagein_anz = 0 ))
	2584	while [[ $do_stagein = true ]]
	2585	do
	2586	if [[ $files_for_pes = false ]]
	2587	then
	2588	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2589	else
	2590	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2591	fi
	2592	cat STAGEIN_OUTPUT
	2593	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2594	then
	2595	file_restored=true
	2596	do_stagein=false
	2597	else
	2598	(( stagein_anz = stagein_anz + 1 ))
	2599	if (( stagein_anz == 10 ))
	2600	then
	2601	printf "\n +++ stagein stoped after 10 tries"
	2602	locat=stage
	2603	exit
	2604	fi
	2605	printf "\n +++ restoring from archive failed, trying again:"
	2606	sleep 900
	2607	fi
	2608	done
	2609	elif [[ $archive_system = DMF ]]
	2610	then
	2611	if [[ $files_for_pes = false ]]
	2612	then
	2613	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	2614	locat=DMF
	2615	exit
	2616	else
	2617	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	2618	cp -r $ARCHIVE/${frelin[$i]} $PWD
	2619	file_restored=true
	2620	fi
	2621	elif [[ $archive_system = tivoli ]]
	2622	then
	2623	if [[ $files_for_pes = false ]]
	2624	then
	2625	if [[ $localhost = ibmh ]]
	2626	then
	2627	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
	2628	else
	2629	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
	2630	fi
	2631	else
	2632	(( inode = 0 ))
	2633	while (( inode < nodes ))
	2634	do
	2635	if [[ $localhost = ibmh ]]
	2636	then
	2637	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
	2638	else
	2639	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
	2640	fi
	2641	(( inode = inode + 1 ))
	2642	done
	2643	fi
	2644	file_restored=true
	2645	elif [[ $archive_system = ut ]]
	2646	then
	2647	if [[ $files_for_pes = false ]]
	2648	then
	2649	cp $UT/${frelin[$i]} .
	2650	else
	2651	(( inode = 0 ))
	2652	while (( inode < nodes ))
	2653	do
	2654	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	2655	(( inode = inode + 1 ))
	2656	done
	2657	fi
	2658	file_restored=true
	2659	else
	2660	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	2661	locat=rearchive
	2662	exit
	2663	fi
	2664
	2665	if [[ $file_restored = true ]]
	2666	then
	2667
	2668	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	2669	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	2670	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	2671	if [[ $files_for_pes = false ]]
	2672	then
	2673	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	2674	else
	2675	mkdir $tmp_data_catalog/${frelin[$i]}
	2676	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	2677	fi
	2678	got_tmp[$i]=true
	2679
	2680	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	2681	mv ${frelin[$i]} ${localin[$i]}
	2682
	2683	fi
	2684	fi
	2685
	2686
	2687	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	2688	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	2689	then
	2690
	2691	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	2692	then
	2693
	2694	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	2695	printf "\n file will be provided for $numprocs processors"
	2696	mkdir ${localin[$i]}
	2697	ival=$numprocs
	2698	(( ii = 0 ))
	2699	while (( ii <= ival-1 ))
	2700	do
	2701	if (( ii < 10 ))
	2702	then
	2703	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	2704	elif (( ii < 100 ))
	2705	then
	2706	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	2707	elif (( ii < 1000 ))
	2708	then
	2709	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	2710	else
	2711	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	2712	fi
	2713	(( ii = ii + 1 ))
	2714	done
	2715
	2716	else
	2717
	2718	if [[ $files_for_pes = true ]]
	2719	then
	2720
	2721	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	2722	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	2723	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	2724	# PER MOVE UMBENANNT WERDEN
	2725	printf "\n providing $numprocs files for the respective processors"
	2726	mkdir ${localin[$i]}
[183]	2727	if [[ $link_local_input = true ]]
	2728	then
	2729	printf " using ln -f\n"
	2730	cd ${absnamein[$i]}
	2731	for file in $(ls *)
	2732	do
	2733	ln -f $file ${localin[$i]}
	2734	done
	2735	cd $TEMPDIR
	2736	fi
	2737	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	2738	if [[ ! -f "${localin[$i]}/_0000" ]]
	2739	then
	2740	if [[ $link_local_input = true ]]
	2741	then
	2742	printf " ln failed for .../_0000, using cp...\n"
	2743	fi
	2744	cp -r ${absnamein[$i]}/* ${localin[$i]}
	2745	fi
[1]	2746
	2747	else
	2748	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	2749	if [[ $link_local_input = true ]]
	2750	then
	2751	printf " using ln -f\n"
	2752	ln -f ${absnamein[$i]} ${localin[$i]}
	2753	fi
	2754	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	2755	if [[ ! -f "${localin[$i]}" ]]
	2756	then
	2757	if [[ $link_local_input = true ]]
	2758	then
	2759	printf " ln failed, using cp...\n"
	2760	fi
	2761	cp ${absnamein[$i]} ${localin[$i]}
	2762	fi
[1]	2763	fi
	2764	fi
	2765	fi
	2766
	2767	done
	2768	if (( i != 0 ))
	2769	then
	2770	printf "\n$striche\n *** all INPUT-files provided \n"
	2771	fi
	2772
	2773
	2774	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	2775	(( i = 0 ))
	2776	while (( i < iic ))
	2777	do
	2778	(( i = i + 1 ))
	2779	if (( i == 1 ))
	2780	then
	2781	printf "\n\n *** execution of INPUT-commands:\n$striche"
	2782	fi
	2783	printf "\n >>> ${in_command[$i]}"
	2784	eval ${in_command[$i]}
	2785	if (( i == iic ))
	2786	then
	2787	printf "\n$striche\n"
	2788	fi
	2789	done
	2790
	2791
	2792	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	2793	cpurest=${cpumax}.
	2794
	2795
[260]	2796	# START DVR STREAMING SERVER
	2797	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	2798	then
	2799	if [[ "$dvr_server" != "" ]]
	2800	then
	2801
	2802	printf "\n\n *** preparing the dvr streaming server configuration file"
	2803
	2804	# Check, if a dvr server is already running
	2805	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	2806	if [[ "$running_dvrserver_id" != "" ]]
	2807	then
	2808
[261]	2809	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	2810	printf "\n This server is used instead starting a new one!"
[261]	2811	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	2812
	2813	else
	2814
	2815	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	2816	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	2817	then
	2818	cp ${PALM_BIN}/.dvrserver.config .
	2819
	2820	# Entering the BASEDIR, UID and GID into this file
	2821	user_id=`id -u`
	2822	group_id=`id -g`
	2823	# & is needed as seperator, because TEMPDIR contains /
	2824	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	2825	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	2826	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	2827	mv .dvrserver.3 .dvrserver.config
	2828	rm .dvrserver.1 .dvrserver.2
	2829
	2830	# Start dvr server in background, get his id and print on terminal
	2831	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	2832	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	2833	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	2834	local_dvrserver_running=.TRUE.
	2835	else
	2836	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	2837	printf "\n \"$PALM_BIN\" "
	2838	locat=dvr
	2839	exit
	2840	fi
	2841
	2842	fi
	2843
	2844	else
	2845	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	2846	fi
	2847	fi
	2848
	2849
	2850	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	2851	# LESEN VON PALM)
	2852	cat > ENVPAR << %%END%%
	2853	&envpar run_identifier = '$fname', host = '$localhost',
	2854	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2855	maximum_cpu_time_allowed = ${cpumax}.,
	2856	revision = '$global_revision',
	2857	local_dvrserver_running = $local_dvrserver_running /
	2858
	2859	%%END%%
	2860
	2861
[1]	2862	# PROGRAMMSTART
	2863	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	2864	PATH=$PATH:$TEMPDIR
	2865
	2866	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	2867	then
	2868	if [[ "$ENVIRONMENT" = BATCH ]]
	2869	then
[211]	2870	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	2871	then
	2872	printf "\n +++ debug is allowed in interactive mode only"
	2873	locat=debug
	2874	exit
	2875	fi
[1]	2876	fi
[5]	2877	if [[ $localhost = decalpha ]]
[1]	2878	then
	2879	dxladebug a.out
	2880	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	2881	then
	2882
	2883	# SETUP THE IBM MPI ENVIRONMENT
	2884	export MP_SHARED_MEMORY=yes
	2885	export AIXTHREADS_SCOPE=S
	2886	export OMP_NUM_THREADS=$threads_per_task
	2887	export AUTHSTATE=files
	2888	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2889
	2890	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	2891	export MP_ADAPTER_USE=shared
	2892	export MP_CPU_USE=multiple
	2893	export MP_TIMEOUT=1200
	2894
	2895	unset MP_TASK_AFFINITY
	2896
	2897	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	2898	#(( ii = 1 ))
	2899	#while (( ii <= $numprocs ))
	2900	#do
	2901	# echo $localhost_realname >> hostfile
	2902	# (( ii = ii + 1 ))
	2903	#done
	2904	#export MP_HOSTFILE=hostfile
	2905
	2906	if [[ "$LOADLBATCH" = yes ]]
	2907	then
	2908	totalview poe a.out $ROPTS
	2909	else
	2910	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2911	export TVDSVRLAUNCHCMD=ssh
	2912	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2913	fi
[211]	2914	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	2915	then
	2916	# CURRENTLY NO DEBUGGER ON LCSGI
	2917	if [[ $run_coupled_model = true ]]
	2918	then
	2919	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	2920	locat=debug
	2921	exit
[223]	2922	else
	2923	echo "no_coupling" > runfile_atmos
[211]	2924	fi
	2925	(( ii = $numprocs / $threads_per_task ))
	2926	export OMP_NUM_THREADS=$threads_per_task
	2927	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	2928	if [[ $threads_per_task != 1 ]]
	2929	then
	2930	printf "\n threads per task: $threads_per_task"
	2931	fi
	2932	printf "\n\n"
[223]	2933	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	2934	then
	2935	# export MPI_LAUNCH_TIMEOUT=360
	2936	if [[ "$totalview" = true ]]
	2937	then
	2938	printf "\n running totalview debugger"
	2939	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
	2940	else
	2941	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	2942	fi
	2943	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	2944	then
	2945	# ulimit -s 300000 # A too large stack size causes problems
	2946	# export MV2_NUM_PORTS=2
	2947	# export MV2_CPU_MAPPING=0:1:2:3
	2948	mpiexec ./a.out $ROPTS < runfile_atmos
	2949	fi
[1]	2950	else
	2951	printf "\n +++ no debug available on \"$localhost\" "
	2952	printf "\n or not implemented in mrun so far"
	2953	locat=debug
	2954	exit
	2955	fi
	2956	else
	2957	if [[ -n $numprocs ]]
	2958	then
	2959	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	2960	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	2961	then
	2962	# SETUP THE IBM MPI ENVIRONMENT
[312]	2963	if [[ $host != ibmh ]]
	2964	then
	2965	export MP_SHARED_MEMORY=yes
	2966	export AIXTHREAD_SCOPE=S
	2967	export OMP_NUM_THREADS=$threads_per_task
	2968	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	2969	export AUTHSTATE=files
	2970	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2971	# export MP_PRINTENV=yes
[1]	2972
[312]	2973	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	2974	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	2975	export MP_WAIT_MODE=poll
	2976	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	2977	fi
[1]	2978	if [[ "$LOADLBATCH" = yes ]]
	2979	then
	2980	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	2981	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	2982	then
[102]	2983	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	2984	else
[343]	2985	if [[ $run_coupled_model = false ]]
	2986	then
	2987	if [[ "$ocean_file_appendix" = true ]]
	2988	then
	2989	echo "precursor_ocean" > runfile_atmos
	2990	else
	2991	echo "precursor_atmos" > runfile_atmos
	2992	fi
	2993	else
	2994	(( iia = $numprocs_atmos / $threads_per_task ))
	2995	(( iio = $numprocs_ocean / $threads_per_task ))
	2996	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	2997	printf "\n using $coupled_mode coupling"
	2998	printf "\n\n"
	2999	echo "coupled_run $iia $iio" > runfile_atmos
	3000	fi
	3001	poe ./a.out $ROPTS < runfile_atmos
[1]	3002	fi
	3003	else
	3004	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
	3005	then
[102]	3006	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[1]	3007	elif [[ $localhost = ibmy ]]
	3008	then
	3009	if [[ -f $hostfile ]]
	3010	then
	3011	cp $hostfile hostfile
	3012	else
	3013	(( ii = 1 ))
	3014	while (( ii <= $numprocs ))
	3015	do
	3016	echo $localhost_realname >> hostfile
	3017	(( ii = ii + 1 ))
	3018	done
	3019	fi
	3020	export MP_HOSTFILE=hostfile
[331]	3021	if [[ $run_coupled_model = false ]]
	3022	then
	3023	if [[ "$ocean_file_appendix" = true ]]
	3024	then
	3025	echo "precursor_ocean" > runfile_atmos
	3026	else
	3027	echo "precursor_atmos" > runfile_atmos
	3028	fi
	3029	else
	3030	(( iia = $numprocs_atmos / $threads_per_task ))
	3031	(( iio = $numprocs_ocean / $threads_per_task ))
	3032	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3033	printf "\n using $coupled_mode coupling"
	3034	printf "\n\n"
	3035	echo "coupled_run $iia $iio" > runfile_atmos
	3036	fi
	3037	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3038
[1]	3039	else
	3040	if [[ "$host_file" = "" ]]
	3041	then
	3042	printf "\n +++ no hostfile given in configuration file"
	3043	locat=config_file
	3044	exit
	3045	else
	3046	eval host_file=$host_file
	3047	fi
	3048	export MP_HOSTFILE=$host_file
[102]	3049	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3050	fi
	3051	fi
[251]	3052	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3053	then
	3054	(( ii = nodes ))
	3055	if [[ $ii = 1 ]]
	3056	then
	3057	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3058	export MPIPROGINF=YES
[61]	3059	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3060	echo "*** execution on single node with mpirun"
[102]	3061	mpirun -np $numprocs ./a.out $ROPTS
[1]	3062	else
	3063	(( i = 0 ))
	3064	while (( i < ii ))
	3065	do
	3066	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3067	(( i = i + 1 ))
	3068	done
	3069
	3070	echo "#!/bin/sh" > mpi_exec_shell
	3071	echo " " >> mpi_exec_shell
	3072	echo "set -u" >> mpi_exec_shell
	3073	echo "F_ERRCNT=0" >> mpi_exec_shell
	3074	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3075	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3076	echo "cpurest=$cpurest" >> mpi_exec_shell
	3077	echo "fname=$fname" >> mpi_exec_shell
	3078	echo "localhost=$localhost" >> mpi_exec_shell
	3079	echo "return_addres=$return_addres" >> mpi_exec_shell
	3080	echo "return_username=$return_username" >> mpi_exec_shell
	3081	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3082	echo "write_binary=$write_binary" >> mpi_exec_shell
	3083	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3084	echo " " >> mpi_exec_shell
	3085	echo "export F_ERRCNT" >> mpi_exec_shell
	3086	echo "export MPIPROGINV" >> mpi_exec_shell
	3087	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3088	echo "export cpurest" >> mpi_exec_shell
	3089	echo "export fname" >> mpi_exec_shell
	3090	echo "export localhost" >> mpi_exec_shell
	3091	echo "export return_addres" >> mpi_exec_shell
	3092	echo "export return_username" >> mpi_exec_shell
	3093	echo "export tasks_per_node" >> mpi_exec_shell
	3094	echo "export write_binary" >> mpi_exec_shell
	3095	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3096	echo " " >> mpi_exec_shell
[102]	3097	echo "exec ./a.out" >> mpi_exec_shell
[1]	3098
	3099	chmod u+x mpi_exec_shell
	3100	export MPIPROGINF=YES
	3101	mpirun -f multinode_config &
	3102	wait
	3103
	3104	fi
[82]	3105	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
[1]	3106	then
	3107
	3108	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3109	# DOES NOT EXIST
[179]	3110	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	3111	then
[179]	3112	if [[ -f $hostfile ]]
	3113	then
	3114	cp $hostfile hostfile
	3115	else
	3116	(( ii = 1 ))
	3117	while (( ii <= $numprocs / $threads_per_task ))
	3118	do
	3119	echo $localhost_realname >> hostfile
	3120	(( ii = ii + 1 ))
	3121	done
	3122	fi
	3123	eval zeile=\"`head -n $ii hostfile`\"
	3124	printf "\n *** running on: $zeile"
[1]	3125	fi
[179]	3126
[1]	3127	(( ii = $numprocs / $threads_per_task ))
	3128	export OMP_NUM_THREADS=$threads_per_task
[246]	3129	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3130	if [[ $threads_per_task != 1 ]]
	3131	then
	3132	printf "\n threads per task: $threads_per_task"
	3133	fi
[102]	3134	if [[ $run_coupled_model = false ]]
[1]	3135	then
[291]	3136	if [[ "$ocean_file_appendix" = true ]]
	3137	then
	3138	echo "precursor_ocean" > runfile_atmos
	3139	else
	3140	echo "precursor_atmos" > runfile_atmos
	3141	fi
[102]	3142	printf "\n\n"
[179]	3143	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3144	then
[221]	3145	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3146	then
	3147	# export MPI_LAUNCH_TIMEOUT=360
[223]	3148	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
[221]	3149	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3150	then
	3151	# ulimit -s 300000 # A too large stack size causes problems
	3152	# export MV2_NUM_PORTS=2
	3153	# export MV2_CPU_MAPPING=0:1:2:3
[325]	3154	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
[221]	3155	fi
[179]	3156	elif [[ $host = lcxt4 ]]
	3157	then
[223]	3158	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[164]	3159	else
[223]	3160	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3161	fi
[1]	3162	else
[164]	3163
[206]	3164	# currently there is no full MPI-2 support on ICE and XT4
	3165	(( iia = $numprocs_atmos / $threads_per_task ))
	3166	(( iio = $numprocs_ocean / $threads_per_task ))
	3167	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3168	printf "\n using $coupled_mode coupling"
[102]	3169	printf "\n\n"
[164]	3170
[206]	3171	if [[ $coupled_mode = "mpi2" ]]
[164]	3172	then
[206]	3173	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3174	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3175	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3176	then
[197]	3177
[221]	3178	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3179	then
	3180	# export MPI_LAUNCH_TIMEOUT=360
	3181	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3182	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3183	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3184	then
	3185	# ulimit -s 300000 # A too large stack size causes problems
	3186	# export MV2_NUM_PORTS=2
	3187	# export MV2_CPU_MAPPING=0:1:2:3
	3188	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3189	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3190	fi
[197]	3191
[206]	3192	elif [[ $host = lcxt4 ]]
	3193	then
[197]	3194
[206]	3195	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3196	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3197
	3198	else
	3199	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3200	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3201	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3202	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3203	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3204	fi
	3205	wait
	3206
[164]	3207	else
	3208
[206]	3209	echo "coupled_run $iia $iio" > runfile_atmos
	3210	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3211	then
	3212
[221]	3213	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3214	then
	3215	# export MPI_LAUNCH_TIMEOUT=360
	3216	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3217	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3218	then
	3219	# ulimit -s 300000 # A too large stack size causes problems
	3220	# export MV2_NUM_PORTS=2
	3221	# export MV2_CPU_MAPPING=0:1:2:3
	3222	mpiexec ./a.out $ROPTS < runfile_atmos
	3223	fi
[206]	3224
	3225	elif [[ $host = lcxt4 ]]
	3226	then
	3227
	3228	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3229
	3230	fi
	3231	wait
[164]	3232	fi
[102]	3233
	3234	# if [[ $scirocco = true ]]
	3235	# then
	3236	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
	3237	# else
	3238	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
	3239	# fi
[206]	3240	fi
[1]	3241	elif [[ $host = decalpha ]]
	3242	then
[102]	3243	dmpirun -np $numprocs a.out $ROPTS
[1]	3244	elif [[ $host = lctit ]]
	3245	then
	3246	export runfile=runfile.$kennung
	3247
	3248	echo "cd $PWD" > $runfile
	3249	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
	3250	echo "export cpurest=$cpurest" >> $runfile
	3251	echo "export fname=$fname" >> $runfile
	3252	echo "export localhost=$localhost" >> $runfile
	3253	echo "export return_addres=$return_addres" >> $runfile
	3254	echo "export return_username=$return_username" >> $runfile
	3255	echo "export tasks_per_node=$tasks_per_node" >> $runfile
	3256	echo "export write_binary=$write_binary" >> $runfile
	3257	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
	3258	echo "./a.out" >> $runfile
	3259	chmod u+x $runfile
	3260
	3261	if [[ "$QUEUE" = interactive ]]
	3262	then
[102]	3263	mpirun -np $numprocs a.out $ROPTS
[1]	3264	else
[127]	3265	(( mem_tsubame = $memory / 1024.0 ))
	3266	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
[118]	3267	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
[265]	3268	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
	3269	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
[1]	3270	fi
	3271
	3272	rm $runfile
	3273	else
[102]	3274	mpprun -n $numprocs a.out $ROPTS
[1]	3275	fi
	3276	[[ $? != 0 ]] && execution_error=true
	3277
	3278
	3279	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3280	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3281	then
	3282	apprentice
	3283	fi
	3284	else
[102]	3285	a.out $ROPTS
[1]	3286	fi
	3287	fi
	3288	if [[ $? != 0 \|\| $execution_error = true ]]
	3289	then
	3290
	3291	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3292	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3293	printf "\n +++ runtime error occured"
	3294	locat=execution
	3295	exit
	3296	else
[102]	3297	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3298	printf "\n$striche\n *** execution finished \n"
[260]	3299
[261]	3300	# Stop the dvr streaming server and process the dvr output in order
	3301	# to create dvrs- and html-files containing all streams
[260]	3302	if [[ "$dvrserver_id" != "" ]]
	3303	then
	3304	kill $dvrserver_id
	3305	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3306
[262]	3307	# If there is a directory, data have been output by the
	3308	# streaming server. Otherwise, user has chosen dvrp_output=local
	3309	if [[ -d DATA_DVR ]]
	3310	then
[261]	3311
[262]	3312	# Add the current dvr configuration file to the dvr output
	3313	# directory
	3314	cp .dvrserver.config DATA_DVR
	3315
	3316	# Process the dvr output (option -s for also generating
	3317	# sequence mode data)
	3318	process_dvr_output -d DATA_DVR -f $fname -s
	3319
	3320	else
	3321
	3322	# Process the local output
	3323	process_dvr_output -l -d DATA_DVR -f $fname
	3324
	3325	fi
	3326
	3327	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3328	then
	3329
	3330	# Process dvr output generated in local mode (dvrp_output=local)
	3331	process_dvr_output -l -d DATA_DVR -f $fname
	3332
[260]	3333	fi
[1]	3334	fi
	3335
	3336
	3337
	3338	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3339	(( i = 0 ))
	3340	while (( i < ioc ))
	3341	do
	3342	(( i = i + 1 ))
	3343	if (( i == 1 ))
	3344	then
	3345	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3346	fi
	3347	printf "\n >>> ${out_command[$i]}"
	3348	eval ${out_command[$i]}
	3349	if (( i == ioc ))
	3350	then
	3351	printf "\n$striche\n"
	3352	fi
	3353	done
	3354
	3355
	3356	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3357	if [[ $do_trace = true ]]
	3358	then
	3359	printf "\n\n"
	3360	ls -al
	3361	fi
	3362
	3363
	3364
	3365	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3366	(( i = 0 ))
	3367	while (( i < iout ))
	3368	do
	3369	(( i = i + 1 ))
	3370	if (( i == 1 ))
	3371	then
	3372	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3373	fi
	3374
	3375	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3376	files_for_pes=false; filetyp=file
	3377	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3378	then
	3379	files_for_pes=true; filetyp=directory
	3380	actionout[$i]=""
	3381	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3382	then
	3383	actionout[$i]=""
	3384	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3385	then
	3386	files_for_pes=true; filetyp=directory
	3387	actionout[$i]="ar"
	3388	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3389	then
	3390	actionout[$i]="ar"
	3391	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3392	then
	3393	files_for_pes=true; filetyp=directory
	3394	actionout[$i]="fl"
	3395	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3396	then
	3397	actionout[$i]="fl"
	3398	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3399	then
	3400	files_for_pes=true; filetyp=directory
	3401	actionout[$i]="tr"
	3402	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3403	then
	3404	actionout[$i]="tr"
	3405	fi
	3406
	3407	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3408	then
	3409	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3410	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3411	then
	3412	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3413	else
	3414
	3415
	3416	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3417	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3418	# REMOTE-RECHNUNGEN
	3419	if [[ "${actionout[$i]}" = tr ]]
	3420	then
	3421	if [[ $localhost != $fromhost ]]
	3422	then
	3423	if [[ $files_for_pes = false ]]
	3424	then
	3425	cps=""
	3426	cst=""
	3427	else
	3428	cps=-c
	3429	cst="/"
	3430	fi
[325]	3431	if [[ $localhost = ibmb \|\| $localhost = nech ]]
[1]	3432	then
	3433
	3434	# TRANSFER IN EIGENSTAENDIGEM JOB
	3435	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3436	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3437	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3438	if [[ $files_for_pes = false ]]
	3439	then
	3440	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3441	else
	3442	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3443	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3444	fi
	3445
	3446	echo "set -x" > transfer_${localout[$i]}
	3447	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3448
	3449	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	3450	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	3451	printf "\n or higher cycle\n"
	3452	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3453
[1]	3454	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3455
	3456	if [[ $localhost = nech ]]
	3457	then
[82]	3458	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3459	else
	3460	if [[ "$LOGNAME" = b323013 ]]
	3461	then
[164]	3462	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3463	else
[164]	3464	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3465	fi
	3466	fi
	3467
	3468	else
	3469
	3470	# TRANSFER INNERHALB DIESES JOBS
	3471	transfer_failed=false
[82]	3472	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	3473	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	3474	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3475	[[ $? != 0 ]] && transfer_failed=true
[1]	3476
	3477	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3478	# LOKALER MASCHINE ANLEGEN
	3479	if [[ $transfer_failed = true ]]
	3480	then
	3481	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3482	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3483
	3484	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3485	# ANLEGEN.
	3486	eval local_catalog=${pathout[$i]}
	3487	if [[ ! -d $local_catalog ]]
	3488	then
	3489	printf " *** local directory does not exist. Trying to create:\n"
	3490	printf " $local_catalog \n"
	3491	mkdir -p $local_catalog
	3492	fi
	3493	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3494	transfer_problems=true
	3495	fi
	3496	fi
	3497	else
	3498
	3499	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	3500	actionout[$i]=""
	3501	fi
	3502	fi
	3503
	3504
	3505	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3506	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3507	# REMOTE-RECHNUNGEN
	3508	if [[ "${actionout[$i]}" = tra ]]
	3509	then
	3510	if [[ $localhost != $fromhost ]]
	3511	then
	3512	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
	3513	then
	3514
	3515	# TRANSFER IN EIGENSTAENDIGEM JOB
	3516	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3517	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3518	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3519	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3520
	3521	echo "set -x" > transfer_${localout[$i]}
	3522	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3523
	3524	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	3525	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	3526	printf "\n or higher cycle\n"
	3527	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3528
[1]	3529	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3530
	3531	if [[ $localhost = nech ]]
	3532	then
[82]	3533	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3534	else
	3535	if [[ $LOGNAME = b323013 ]]
	3536	then
[164]	3537	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3538	else
[164]	3539	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3540	fi
	3541	fi
	3542
	3543	else
	3544
	3545	# TRANSFER INNERHALB DIESES JOBS
	3546	transfer_failed=false
[82]	3547	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	3548	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	3549	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3550	[[ $? != 0 ]] && transfer_failed=true
[1]	3551
	3552	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3553	# LOKALER MASCHINE ANLEGEN
	3554	if [[ $transfer_failed = true ]]
	3555	then
	3556	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3557	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3558
	3559	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3560	# ANLEGEN
	3561	eval local_catalog=${pathout[$i]}
	3562	if [[ ! -d $local_catalog ]]
	3563	then
	3564	printf " *** local directory does not exist. Trying to create:\n"
	3565	printf " $local_catalog \n"
	3566	mkdir -p $local_catalog
	3567	fi
	3568
	3569	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3570	transfer_problems=true
	3571	fi
	3572	fi
	3573	else
	3574
	3575	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	3576	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	3577	actionout[$i]=a
	3578	fi
	3579	fi
	3580
	3581
	3582	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	3583	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	3584	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	3585	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	3586	if [[ "${actionout[$i]}" = fl ]]
	3587	then
	3588	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3589	chmod g+rx $tmp_data_catalog
	3590	if [[ $files_for_pes = false ]]
	3591	then
	3592	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3593	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3594	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	3595	else
	3596	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	3597	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3598	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	3599	cd ${localout[$i]}
	3600	for file in $(ls *)
	3601	do
	3602	ln -f $file $tmp_data_catalog/${frelout[$i]}
	3603	done
	3604	cd $TEMPDIR
[1]	3605	fi
	3606
	3607
	3608	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	3609	if [[ $store_on_archive_system = true ]]
	3610	then
	3611
	3612	if [[ $archive_system = asterix ]]
	3613	then
	3614	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3615	if [[ $files_for_pes = false ]]
	3616	then
	3617	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3618	else
	3619	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3620	fi
	3621	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3622	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	3623	echo "then" >> archive_${frelout[$i]}
	3624	echo " do_stageout=false" >> archive_${frelout[$i]}
	3625	echo "else" >> archive_${frelout[$i]}
	3626	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	3627	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	3628	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	3629	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	3630	if [[ $files_for_pes = false ]]
	3631	then
	3632	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	3633	else
	3634	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	3635	fi
	3636	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	3637	echo "fi" >> archive_${frelout[$i]}
	3638	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3639	elif [[ $archive_system = DMF ]]
	3640	then
	3641	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3642	if [[ $files_for_pes = false ]]
	3643	then
	3644	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	3645	locat=DMF
	3646	exit
	3647	else
	3648	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	3649	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	3650	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	3651	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	3652	fi
	3653	elif [[ $archive_system = tivoli ]]
	3654	then
	3655	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3656	if [[ $files_for_pes = false ]]
	3657	then
	3658	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3659	echo "set -x" >> archive_${frelout[$i]}
	3660	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3661	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3662	else
	3663
	3664	echo "set -x" >> archive_${frelout[$i]}
	3665	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3666	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3667	cd $tmp_data_catalog
	3668	all_files=`ls -1 ${frelout[$i]}/*`
	3669	cd - > /dev/null
	3670	(( inode = 0 ))
	3671	(( tp1 = tasks_per_node + 1 ))
	3672	while (( inode < nodes ))
	3673	do
	3674	# echo "*** all_files = \"$all_files\" "
	3675	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3676	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3677	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	3678	# echo "*** files = \"$files\" "
	3679	# echo "*** all_files = \"$all_files\" "
	3680	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3681	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3682	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3683	(( inode = inode + 1 ))
	3684	done
	3685	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3686	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3687	fi
	3688	elif [[ $archive_system = ut ]]
	3689	then
	3690	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3691	if [[ $files_for_pes = false ]]
	3692	then
	3693	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3694	echo "set -x" >> archive_${frelout[$i]}
	3695	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3696	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3697	else
	3698
	3699	echo "set -x" >> archive_${frelout[$i]}
	3700	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3701	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3702	cd $tmp_data_catalog
	3703	all_files=`ls -1 ${frelout[$i]}/*`
	3704	cd - > /dev/null
	3705	(( inode = 0 ))
	3706	(( tp1 = tasks_per_node + 1 ))
	3707	while (( inode < nodes ))
	3708	do
	3709	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3710	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3711	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3712	(( inode = inode + 1 ))
	3713	done
	3714	fi
	3715	elif [[ $archive_system = none ]]
	3716	then
	3717	printf " +++ archiving on $localhost not available!\n"
	3718	fi
	3719
	3720	if [[ $archive_system != none ]]
	3721	then
	3722	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
	3723	then
[164]	3724	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
	3725	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3726	elif [[ $localhost = nech ]]
	3727	then
[82]	3728	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3729	fi
	3730	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3731	fi
	3732	else
	3733	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
	3734	fi
	3735
	3736
	3737	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	3738	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3739	if [[ $files_for_pes = false ]]
	3740	then
	3741	cat /dev/null > ${pathout[$i]}
	3742	else
	3743	mkdir -p ${pathout[$i]}
	3744	fi
	3745
	3746	fi
	3747
	3748
	3749	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	3750	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	3751	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3752	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	3753	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	3754	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	3755	if [[ "${actionout[$i]}" = ar ]]
	3756	then
	3757	if [[ $files_for_pes = false ]]
	3758	then
	3759	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3760	printf "\n ${pathout[$i]}"
	3761	printf "\n File will be copied to archive-system ($archive_system) !\n"
	3762	else
	3763	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	3764	printf "\n ${pathout[$i]}"
	3765	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	3766	fi
	3767	mv ${localout[$i]} ${frelout[$i]}
	3768
	3769	file_saved=false
	3770
	3771	if [[ $archive_system = asterix ]]
	3772	then
	3773	do_stageout=true
	3774	(( stageout_anz = 0 ))
	3775	while [[ $do_stageout = true ]]
	3776	do
	3777	if [[ $files_for_pes = false ]]
	3778	then
	3779	stageout ${frelout[$i]} > STAGE_OUTPUT
	3780	else
	3781	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	3782	fi
	3783	cat STAGE_OUTPUT
	3784	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	3785	then
	3786	file_saved=true
	3787	do_stageout=false
	3788	else
	3789	if [[ $files_for_pes = false ]]
	3790	then
	3791	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	3792	else
	3793	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	3794	fi
	3795	(( stageout_anz = stageout_anz + 1 ))
	3796	if (( stageout_anz == 10 ))
	3797	then
	3798	printf "\n +++ stoped after 10 unsuccessful tries!"
	3799	archive_save=false
	3800	do_stageout=false
	3801	else
	3802	printf "\n *** new try to store on archive after 15 min:"
	3803	sleep 900
	3804	fi
	3805	fi
	3806	done
	3807	elif [[ $archive_system = DMF ]]
	3808	then
	3809	if [[ $files_for_pes = false ]]
	3810	then
	3811	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	3812	locat=DMF
	3813	exit
	3814	else
	3815	rm -rf $ARCHIVE/${frelout[$i]}
	3816	cp -r ${frelout[$i]} $ARCHIVE
	3817	fi
	3818	file_saved=true
	3819	elif [[ $archive_system = tivoli ]]
	3820	then
	3821	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3822	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3823	# GELEGT WERDEN
	3824	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3825	chmod g+rx $tmp_data_catalog
	3826	if [[ $files_for_pes = false ]]
	3827	then
	3828	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3829	else
	3830	mkdir $tmp_data_catalog/${frelout[$i]}
	3831	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3832	fi
	3833
	3834	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3835	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3836	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3837	if [[ $files_for_pes = false ]]
	3838	then
	3839	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3840	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3841	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3842	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3843	else
	3844	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3845	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3846	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3847	fi
	3848
[164]	3849	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3850	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3851	file_saved=true
	3852
	3853	elif [[ $archive_system = ut ]]
	3854	then
	3855	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3856	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3857	# GELEGT WERDEN
	3858	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3859	chmod g+rx $tmp_data_catalog
	3860	if [[ $files_for_pes = false ]]
	3861	then
	3862	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3863	else
	3864	mkdir $tmp_data_catalog/${frelout[$i]}
	3865	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3866	fi
	3867
	3868	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3869	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3870	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3871	if [[ $files_for_pes = false ]]
	3872	then
	3873	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3874	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3875	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3876	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3877	else
	3878	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3879	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3880	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3881	fi
	3882
[82]	3883	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3884	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3885	file_saved=true
	3886
	3887	else
	3888	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	3889	archive_save=false
	3890	fi
	3891	if [[ $file_saved = true ]]
	3892	then
	3893	if [[ $files_for_pes = false ]]
	3894	then
	3895	cat /dev/null > ${pathout[$i]}
	3896	else
	3897	mkdir -p ${pathout[$i]}
	3898	fi
	3899	fi
	3900	fi
	3901
	3902	# APPEND AUF LOKALER MASCHINE
	3903	if [[ "${actionout[$i]}" = "a" ]]
	3904	then
	3905	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	3906	cat ${localout[$i]} >> ${pathout[$i]}
	3907	fi
	3908
	3909	# KOPIEREN AUF LOKALER MASCHINE
	3910	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	3911	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	3912	then
	3913
	3914	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	3915	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	3916	then
	3917	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	3918	if [[ $link_local_output = true ]]
	3919	then
	3920	printf " using ln -f\n"
	3921	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3922	fi
	3923	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	3924	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	3925	then
	3926	if [[ $link_local_output = true ]]
	3927	then
	3928	printf " ln failed, using cp...\n"
	3929	fi
	3930	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3931	fi
[1]	3932	else
	3933	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	3934	if [[ $link_local_output = true ]]
	3935	then
	3936	printf " using ln -f\n"
	3937	ln -f ${localout[$i]} ${pathout[$i]}
	3938	fi
	3939	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	3940	if [[ ! -f "${pathout[$i]}" ]]
	3941	then
	3942	if [[ $link_local_output = true ]]
	3943	then
	3944	printf " ln failed, using cp...\n"
	3945	fi
	3946	cp ${localout[$i]} ${pathout[$i]}
	3947	fi
[1]	3948	fi
	3949
	3950	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	3951	then
	3952
	3953	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	3954	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	3955	# WIRD DANN KOPIERT
	3956	# PER MOVE UMBENANNT WERDEN
	3957	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	3958	if [[ $link_local_output = true ]]
	3959	then
	3960	printf " using ln -f\n"
	3961	mkdir ${pathout[$i]}
	3962	cd ${localout[$i]}
	3963	for file in $(ls *)
	3964	do
	3965	ln -f $file ${pathout[$i]}
	3966	done
	3967	cd $TEMPDIR
	3968	fi
	3969	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	3970	if [[ ! -f "${pathout[$i]}/_0000" ]]
	3971	then
	3972	if [[ $link_local_output = true ]]
	3973	then
	3974	printf " ln failed for .../_0000, using cp...\n"
	3975	fi
	3976	cp -r ${localout[$i]} ${pathout[$i]}
	3977	fi
[1]	3978
	3979	fi
	3980	fi
	3981	done
	3982	if (( i != 0 ))
	3983	then
	3984	if [[ $transfer_problems = true ]]
	3985	then
	3986	printf "\n$striche\n *** OUTPUT-files saved"
	3987	printf "\n +++ WARNING: some data transfers failed! \n"
	3988	else
	3989	printf "\n$striche\n *** all OUTPUT-files saved \n"
	3990	fi
	3991	fi
	3992
	3993
	3994	# EVENTUELL FOLGEJOB STARTEN
	3995	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	3996	if [[ -f CONTINUE_RUN ]]
	3997	then
	3998
	3999	if [[ $archive_save = true ]]
	4000	then
	4001
	4002	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4003	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4004	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4005	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4006	# HANDEN
	4007	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4008	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4009	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4010	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4011	then
	4012	mc=`echo $mc \| sed 's/#/f/g'`
	4013	fi
	4014
	4015
	4016	# JOB STARTEN
	4017	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4018	echo " $mc"
	4019	printf "\n$striche\n"
	4020	if [[ $localhost != $fromhost ]]
	4021	then
	4022
[204]	4023	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
[1]	4024	then
	4025	echo "*** ssh will be used to initiate restart-runs!"
	4026	echo " return_addres=\"$return_addres\" "
	4027	echo " return_username=\"$return_username\" "
	4028	if [[ $return_addres = 172.20.25.41 ]]
	4029	then
	4030	# WORKAROUND AUF SCIROCCO AM TIT
[33]	4031	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
[1]	4032	else
[33]	4033	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4034	fi
	4035	else
	4036	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4037	locat=restart; exit
	4038	fi
	4039
	4040	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4041	# DER AKTUELLE JOB ENDET
	4042	sleep 30
	4043
	4044	else
	4045
	4046	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4047	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4048	cd $LOCAL_PWD
[108]	4049	if [[ $localhost = lcfimm ]]
	4050	then
	4051	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4052	else
	4053	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4054	fi
[1]	4055	cd - > /dev/null
	4056	fi
	4057	printf "\n$striche\n *** restart-run initiated \n"
	4058
	4059
	4060	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4061	# GEHOLT WORDEN SIND, LOESCHEN
	4062	(( i = 0 ))
	4063	while (( i < iin ))
	4064	do
	4065	(( i = i + 1 ))
	4066	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4067	then
	4068	rm -r $tmp_data_catalog/${frelin[$i]}
	4069	fi
	4070	done
	4071
	4072	else
	4073
	4074	printf "\n +++ no restart-run possible, since errors occured"
	4075	printf "\n during the archive process"
	4076	fi
	4077
	4078	fi
	4079
	4080
	4081
	4082	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
	4083	if [[ "$email_notification" != "" ]]
	4084	then
	4085
	4086	if [[ $localhost != $fromhost ]]
	4087	then
	4088	if [[ -f CONTINUE_RUN ]]
	4089	then
	4090	echo "PALM restart run necessary" > email_text
	4091	echo "description header of actual run:" >> email_text
	4092	cat CONTINUE_RUN >> email_text
	4093	echo "mrun-command to restart:" >> email_text
	4094	echo "$mc" >> email_text
	4095	else
	4096	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4097	fi
	4098	mail $email_notification < email_text
	4099	printf "\n *** email notification sent to \"$email_notification\" "
	4100	fi
	4101	fi
	4102
	4103
	4104
	4105	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4106	cd $HOME
	4107	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4108
	4109	else
	4110
	4111
	4112	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4113	# CHENDE AKTIONEN DURCHGEFUEHRT
	4114
	4115	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[82]	4116	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	4117	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4118	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4119	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4120	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4121	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4122	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4123	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4124	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4125	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4126	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4127	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4128	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4129	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4130	if [[ $use_openmp = true ]]
	4131	then
	4132	mrun_com=${mrun_com}" -O"
	4133	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
	4134	else
	4135	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
	4136	fi
	4137	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
	4138	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4139	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4140	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4141	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4142	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4143	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[1]	4144	if [[ $do_remote = true ]]
	4145	then
	4146	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4147	fi
	4148
	4149
	4150	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4151	jobfile=jobfile.$RANDOM
	4152
	4153
	4154	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4155	echo "mkdir $TEMPDIR" >> $jobfile
	4156	echo "cd $TEMPDIR" >> $jobfile
	4157
	4158
	4159	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4160	if [[ $do_trace = true ]]
	4161	then
	4162	echo "set -x" >> $jobfile
	4163	else
	4164	echo "set +vx" >> $jobfile
	4165	fi
	4166
	4167
[191]	4168	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4169	# DATEI FUER DEN JOB
	4170	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
[1]	4171	then
	4172
[191]	4173	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4174	# KOPIEREN
	4175	if [[ $restart_run != true ]]
	4176	then
	4177	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4178	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4179	fi
[1]	4180
[191]	4181	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[193]	4182	echo "set -x" >> $jobfile
	4183	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4184	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4185
[193]	4186	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4187	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4188	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4189	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4190	echo "execute_mrun=true" >> $jobfile
	4191	echo " " >> $jobfile
	4192
[191]	4193	else
	4194
	4195	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4196	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4197	if [[ $do_compile = true ]]
	4198	then
	4199
	4200	source_catalog=SOURCES_FOR_RUN_$fname
	4201
	4202	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4203	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4204	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4205	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4206	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4207	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4208
	4209	for filename in $source_list
	4210	do
	4211	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4212	echo "cat > $filename << \"%END%\"" >> $jobfile
	4213	cat $source_catalog/$filename >> $jobfile
	4214	echo " " >> $jobfile
	4215	echo "%END%" >> $jobfile
	4216	echo " " >> $jobfile
	4217	done
	4218
[1]	4219	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4220	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4221	cat $source_catalog/Makefile >> $jobfile
[1]	4222	echo " " >> $jobfile
	4223	echo "%END%" >> $jobfile
	4224	echo " " >> $jobfile
	4225
[191]	4226	echo "cd - > /dev/null" >> $jobfile
[1]	4227
[191]	4228	fi
[1]	4229
	4230
[191]	4231	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4232	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4233	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4234	cat $config_file >> $jobfile
	4235	echo "%END%" >> $jobfile
	4236	echo " " >> $jobfile
[1]	4237
	4238
[191]	4239	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4240	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4241	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4242	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4243	echo "%END%" >> $jobfile
	4244	if [[ $host = lctit ]]
	4245	then
	4246	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
	4247	echo "mv mrun_new $mrun_script_name" >> $jobfile
	4248	fi
	4249	echo "chmod u+x $mrun_script_name" >> $jobfile
	4250	echo "execute_mrun=true" >> $jobfile
	4251	echo " " >> $jobfile
[1]	4252
	4253	fi
	4254
[191]	4255
[1]	4256	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4257	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4258	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4259	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4260	if [[ $do_remote = true ]]
	4261	then
	4262	(( i = 0 ))
	4263	while (( i < iin ))
	4264	do
	4265	(( i = i + 1 ))
	4266	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4267	if [[ "${transin[$i]}" = job ]]
	4268	then
	4269	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4270	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4271	echo " " >> $jobfile
	4272	echo "%END%" >> $jobfile
	4273	else
[82]	4274	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4275	fi
	4276
	4277	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4278	echo "if [[ \$? = 1 ]]" >> $jobfile
	4279	echo "then" >> $jobfile
	4280	echo " echo \" \" " >> $jobfile
	4281	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4282	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4283	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4284	echo " execute_mrun=false" >> $jobfile
	4285	echo "fi" >> $jobfile
	4286	done
	4287	fi
	4288
	4289	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4290	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4291	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4292	echo "export LOCAL_PWD" >> $jobfile
	4293
	4294	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4295	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4296	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4297
[66]	4298	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4299	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4300	then
	4301	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4302	fi
[1]	4303
	4304	# MRUN AUF ZIELRECHNER AUFRUFEN
	4305	echo "set -x" >> $jobfile
	4306	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4307
	4308	echo 'ls -al; echo `pwd`' >> $jobfile
	4309	echo "cd \$HOME" >> $jobfile
	4310	echo "rm -rf $TEMPDIR" >> $jobfile
	4311
	4312
	4313
	4314
	4315	# JOB PER SUBJOB STARTEN
	4316	if [[ $silent = false ]]
	4317	then
	4318	printf "\n "
	4319	else
	4320	printf "\n\n"
	4321	fi
	4322
[164]	4323	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog $jobfile
[1]	4324	rm -rf $jobfile
	4325
	4326
	4327	fi # ENDE REMOTE-TEIL
	4328
	4329
	4330
	4331	# ENDE DER PROZEDUR

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