PALM source code change log

Current revision:

r4044


Current fixed release: 6.0 (r3477)

The following table documents all changes to the PALM repository since 2019.

Previous changes:

Please follow the rules for developers when carrying out source code changes!

Entries in the fifth column specify the type of the change: change of existing code (C), new code (N) or bugfix (B). More detailed information about the changes may sometimes be found in the header comment lines of the respectively changed routines.

svn
Revision
Date
(YYYY/MM/DD)
Author PALM
version
Type Description

r4043

2019/06/18

schwenkel

6.0

C

SVN commit message: further modularization of lpm and delete min_nr_particle (Delete: interactions_droplet_ptq, Changed: Makefile, lagrangian_particle_model_mod, mod_particle_attributes,pmc_particle_interface, time_integration)

r4039

2019/06/18

suehring

6.0

B, C, N

SVN commit message: diagnostic output: Modularize diagnostic output, rename subroutines; formatting adjustments; allocate arrays only when required; add output of uu, vv, ww to enable variance calculation via temporal EC method; radiation: bugfix in masked data output; flow_statistics: Correct conversion to kinematic vertical scalar fluxes in case of pw-scheme and statistic regions (Makefile, average_3d_data, check_parameters, data_output_2d, data_output_3d, data_output_mask diagnostic_output_quantities_mod, flow_statistics, module_interface, netcdf_interface_mod, palm, radiation_model_mod, read_restart_data_mod, sum_up_3d_data, time_integration write_restart_data_mod)

r4029

2019/06/14

raasch

6.0

B, C

SVN commit message: bugfix: decycling of chemistry species after nesting data transfer, exchange of ghost points and boundary conditions separated for chemical species and SALSA module, nest_chemistry option removed, netcdf variable NF90_NOFILL is used as argument instead of 1 in calls to NF90_DEF_VAR_FILL (chemistry_model_mod, netcdf_interface_mod, pmc_interface_mod, surface_data_output_mod, time_integration)

r4028

2019/06/13

schwenkel

6.0

C

SVN commit message: Further modularization of particle code components (lagrangian_particle_model_mod, init_3d_model, module_interface)

r4027

2019/06/13

schwenkel

6.0

N

SVN commit message: Added microphyics scheme morrision_no_rain (bulk_cloud_model_mod)

r4026

2019/06/12

suehring

6.0

B, C

SVN commit message: Improve albedo initialization in land-surface model by setting always some default albedo types, in order to be independent on any user settings; Mask topography at boundary grid cells in nesting mass conservation (land_surface_model_mod, pmc_interface_mod)

r4024

2019/06/12

suehring

6.0

B

SVN commit message: Bugfix in albedo initialization, caused crashes in rrtmg calls (land_surface_model_mod)

r4023

2019/06/12

maronga

6.0

C

SVN commit message: consistent output of time stamps in header and run control for runs with spinup. Commented previous revisions in palm_csd (header, time_integration_spinup, palm_csd_tools, palm_csd_canopy_generator)

r4022

2019/06/12

suehring

6.0

B, C

SVN commit message: Synthetic turbulence generator: Revise bias correction of imposed perturbations (correction via volume flow can create instabilities in case the mean volume flow is close to zero); Introduce lower limits in calculation of coefficient matrix, else the calculation may become numerically unstable; Impose perturbations every timestep, even though no new set of perturbations is generated in case dt_stg_call /= dt_3d; Implement a gradual decrease of Reynolds stress and length scales above ABL height (within 1 length scale above ABL depth to 1/10) rather than an abrupt decline; Bugfix in non-nested case: use ABL height for parametrized turbulence; Offline nesting: Rename subroutine for ABL height calculation and make it public; Change top boundary condition for pressure back to Neumann (nesting_offl_mod, parin, synthetic_turbulence_generator_mode, time_integration)

r4017

2019/06/06

schwenkel

6.0

C

SVN commit message: Modularization of all lagrangian particle model code components and deleting dvrp code components (Makefile, check_parameters, header, init_3d_model, init_dvrp, lagrangian_particle_model_mod, mod_particle_attributes, module_interface, modules, palm, parin, pmc_particle_interface, read_restart_data_mod, time_integration, write_restart_data_mod) Deleted Files: data_output_dvrp, init_dvrp, lpm, lpm_advec, lpm_boundary_conds, lpm_calc_liquid_water_content, lpm_collision_kernels, lpm_data_output_particles, lpm_droplet_collision, lpm_droplet_condensation, lpm_exchange_horiz, lpm_init, lpm_init_sgs_tke, lpm_merging, lpm_pack_arrays,lpm_read_restart_file, lpm_set_attributes, lpm_splitting,lpm_write_exchange_statistics, lpm_write_restart_file,package_parin, set_slicer_attributes_dvrp, user_data_output_dvrp, user_dvrp_coltab

r4015

2019/06/05

raasch

6.0

C

SVN commit message: all reals changed to double precision in order to work with 32-bit working precision, otherwise calculated time intervals would mostly give zero; variable child_domain_nvn eliminated (cpulog_mod, pres)

r4013

2019/06/03

raasch

6.0

B

SVN commit message: index bugfix concerning reallocation of particle array (lpm_exchange_horiz)

r4010

2019/05/31

hellstea

6.0

N

SVN commit message: Nest mass conservation correction included (pmc_interface_mod, time_integration)

r4009

2019/05/31

raasch

6.0

B, C

SVN commit message: bugfix for r3998, allocation of 3d temporary arrays of various dimensions revised (read_restart_data_mod)

r4004

2019/05/24

suehring

6.0

C, B

SVN commit message: chemistry: perform basic checks only when anthropenic emissions are switched on; virtual flights: allow arbitrary start/end positions also in return mode; bugfix in 2d data output (chemistry_model_mod, module_interface, virtual_flight_mod)

r4002

2019/05/24

Giersch

6.0

C, N

SVN commit message: renaming of some test cases, exercises of PALM tutorial added as test cases with empty core list (new cases: dispersion_eulerian_and_lpm_extended, example_neutral, flow_around_cube_cyclic, flow_around_cube_noncyclic, flow_around_cube_precursor, lsm_short; renamed: example_cbl_short to example_cbl, test_oceanml to oceanml)

r3999

2019/05/23

suehring

6.0

C

SVN commit message: new module for diagnostic output quantities added + output of turbulence intensity (init_pegrid, Makefile)

r3994

2019/05/22

suehring

6.0

N

SVN commit message: new module for diagnostic output quantities added + output of turbulence intensity (average_3d_data, check_parameters, data_output_2d, data_output_3d, data_output_mask, diagnostic_output_quantities_mod,netcdf_interface_mod, Makefile, palm, read_restart_data_mod, sum_up_3d_data, time_integration, write_restart_data_mod)

r3993

2019/05/22

suehring

6.0

C

SVN commit message: Rename the USM-internal flag spinup into during_spinup, in order to avoid confusion with global control parameter (urban_surface_mod)

r3992

2019/05/22

suehring

6.0

B

SVN commit message: Bugfix in rrtmg radiation branch in a nested run when the lowest prognistic grid points in a child domain are all inside topography (radiation_model_mod)

r3990

2019/05/22

suehring

6.0

C

SVN commit message: increase maximal number of virtual flights (modules)

r3988

2019/05/22

kanani

6.0

N

SVN commit message: enable steering of output interval for virtual measurements (Makefile, read_restart_data_mod, time_integration, virtual_measurement_mod, write_restart_data_mod)

r3987

2019/05/22

kanani

6.0

C, N

SVN commit message: clean up location, debug and error messages (data_output_2d, data_output_3d, init_3d_model, land_surface_model_mod, message, module_interface, modules, multi_agent_system_mod, nesting_offl_mod, netcdf_data_input_mod, parin, pmc_interface_mod, prognostic_equations, radiation_model_mod, surface_layer_fluxes_mod, synthetic_turbulence_generator_mod, urban_surface_mod)

  • Reduced number of location messages during initialization in order to enhance readability of the job logfile for standard users. In case more output is required for debugging purposes, the user may enable debug_output.
  • Added an additional switch debug_output_timestep in order to be able to separately switch on/off the debug output during timestepping to keep DEBUG file size as small as possible.

r3986

2019/05/20

Giersch

6.0

C

SVN commit message: Case statement in gust_rrd_local modifed, redundant integration of control parameters in user_rrd_global removed (gust_mod.f90, user_module.f90)

r3984

2019/05/16

hellstea

6.0

C

SVN commit message: Some cleaning up in pmc_interface_mod, renamings, commenting improvements, etc (pmc_interface_mod)

r3982

2019/05/16

raasch

6.0

B

SVN commit message: bugfix: -b is not added in automatically generated batch jobs for remote hosts (palmrun)

r3981

2019/05/15

suehring

6.0

B

SVN commit message: Bugfix in particlel nesting, TKE-gradients at ghost points at non-cyclic boundaries were not initialized (lpm_init, lpm_init_sgs_tke)

r3979

2019/05/15

hellstea

6.0

B

SVN commit message: Bugfix in nesting interpolation pmci_interp_1sto_sn (pmc_interface_mod)

r3976

2019/05/15

hellstea

6.0

B

SVN commit message: Child initialization extended to the redundant ghost points behind the nest boundaries (pmc_interface_mod)

r3968

2019/05/13

suehring (responsible E.C. Chan)

6.0

C

SVN commit message: Updates from chemistriy branched merged into trunk: code cleaning and formatting, code structure optimizations (cehm_emissions_mode, chem_modules, chemistry_model_mod, netcdf_data_input_mod, time_integration)

r3967

2019/05/09

gronemeier

6.0

C

SVN commit message: Save binary data of virtual measurements within separate folder (.palm.iofiles, check_open.f90)

r3966

2019/05/09

gronemeier

6.0

C

SVN commit message: remove origin time from time unit; compose origin_time within subroutine netcdf_create_global_atts (netcdf_interface_mod.f90)

r3965

2019/05/09

suehring

6.0

C

SVN commit message: Add file connection statements for virtual flight data (.palm.iofiles)

r3964

2019/05/09

suehring

6.0

B, C

SVN commit message: In a nested child domain, distinguish between soil moisture and temperature initialization in case the parent domain is initialized via the dynamic input file; in the offline nesting, add a safety factor for the calculation of bulk Richardson number in order to avoid division by zero which can potentially happen if 3D buildings are located directly at the lateral model boundaries (land_surface_model_mod, nesting_offl_mod, pmc_child_mod)

r3962

2019/05/08

suehring

6.0

B

SVN commit message: Bugfixes in initial settings of child and parent communication patterns (pmc_child_mod, pmc_parent_mod)

r3955

2019/05/07

maronga

6.0

B

SVN commit message: bugfixes in palm_csd (palm_csd)

r3954

2019/05/06

gronemeier

6.0

B

SVN commit message: bugfix: corrected format for date_time_string (netcdf_interface_mod.f90)

r3953

2019/05/06

gronemeier

6.0

B

SVN commit message: set origin_time and starting point of time coordinate according to day_of_year_init and time_utc_init (netcdf_interface_mod.f90)

r3950

2019/05/03

forkel

6.0

B

SVN commit message: forgot something in def_salsa+phstat (mechanisms/def_salsa+phstat/salsa+phstat.eqn and mechanisms/def_salsa+phstat/salsa+phstat.spc added)

r3949

2019/05/03

forkel

6.0

B

SVN commit message: fix in def_salsa+simple/chem_gasphase_mod.kpp and finaling def_salsa+phstat (mechanisms/def_salsa+simple/chem_gasphase_mod.kpp, mechanisms/def_salsa+simple/chem_gasphase_mod.f90, mechanisms/def_salsa+phstat/chem_gasphase_mod.kpp, mechanisms/def_salsa+phstat/chem_gasphase_mod.f90)

r3948

2019/05/03

hellstea

6.0

C

SVN commit message: some cleaning up (pmc_interface_mod, pmc_particle_interface)

r3947

2019/05/03

hellstea

6.0

C

SVN commit message: Child-domain size checks extended (pmc_interface_mod)

r3946

2019/05/02

hellstea

6.0

N

SVN commit message: New checks added for nested setups (pmc_interface_mod)

r3944

r3943

2019/05/02

maronga

6.0

B, C

SVN commit message: bugfixes in urban surface model; output of greenz roof transpiration added/corrected; minor formatting improvements (data_output_2d, land_surface_model_mod, netcdf_data_input_mod, pmc_child_mod, pmc_general_mod, radiation_model_mod, sum_up_3d_data, surface_mod, urban_surface_mod)

r3942

2019/04/30

kanani

6.0

B, C

SVN commit message: Fix too short driver attribute lengths, and individualize error messages (netcdf_data_input_mod, netcdf_interface_mod)

r3941

2019/04/30

suehring

6.0

C, N

SVN commit message: Move checks for correct dimensions in static input file; improve checks concerning buildings; check whether at least one surface type is set at a natural-type surface element (land_surface_model_mod, netcdf_data_input_mod)

r3937

2019/04/29

suehring

6.0

B, C

SVN commit message: Move initialization of STG behind initialization of offline nesting; Bugfix in STG in case of very early restart; calculation of scaling parameters used for parametrization of synthetic turbulence profiles improved; in offline nesting, set boundary value at upper-left and upper-south grid points for u- and v-component, respectively (init_3d_model, nesting_offl_mod, synthetic_turbulence_generator)

r3936

2019/04/26

kanani

6.0

B

SVN commit message: Enable time-averaged output of theta_2m* with restarts (read_restart_data_mod, write_restart_data_mod)

r3933

2019/04/25

kanani

6.0

B, C

SVN commit message: Bugfixes and clean-up for output quantity theta_2m* (average_3d_data, check_parameters, land_surface_model_mod, sum_up_3d_data, surface_mod, urban_surface_mod)

The main problem was that the output array pt_2m (output quantity theta_2m*) was not initialized causing crash at do2d_at_begin when spinup was disabled.

r3932

2019/04/24

suehring

6.0

B

SVN commit message: Add missing if statements for call of pmc_set_dataarray_name for TKE and dissipation; minor bugfix for nesting of chemical species (pmc_child_mod, pmc_general_mod, pmc_interface_mod)

r3930

2019/04/24

forkel

6.0

C

SVN commit message: changed subroutine name from chem_non_transport_physics to chem_non_advective_processes (chemistry_model_mod.f90, module_interface.f90)

r3929

2019/04/24

banzhafs

6.0

C, B

SVN commit message: Correct/complete module_interface introduction for chemistry model and bug fix in chem_depo subroutine

r3928

2019/04/23

gronemeier

6.0

C

SVN commit message: change dimensions in NetCDF output files of virtual measurements; add output path to namelist (combine_virtual_measurements)

r3927

2019/04/23

raasch

6.0

C

SVN commit message: pointer attribute removed from scalar 3d-array for performance reasons (advec_s_pw, advec_s_up, doffusion_s)

r3918

2019/04/18

suehring

6.0

C

SVN commit message: Disable also green fraction at vertical building walls; update test configuration for urban_environment test case (urban_surface_mod, case_config.yml)

r3917

2019/04/18

raasch

6.0

C

SVN commit message: in case of batch jobs on remote machines, copying files from SOURCES_FOR_RUN folder has been rearranged to avoid that input files with original names (e.g. ..._p3d) are copied into the temporary working catalog (palmrun)

r3914

2019/04/17

suehring

6.0

B

SVN commit message: In order to obtain correct surface temperature during spinup set window fraction to zero (only during spinup) instead of just disabling time-integration of window-surface temperature. (urban_surface_mod)

r3913

2019/04/17

gronemeier

6.0

B

SVN commit message: Bugfix: rotate positions of measurements before writing them into file (virtual_measurement_mod)

r3910

2019/04/17

suehring

6.0

B

SVN commit message: Bugfix in rotation of UTM coordinates (virtual_measurement_mod)

r3904

2019/04/16

gronemeier

6.0

B

SVN commit message: rotate coordinates of stations by given rotation_angle (virtual_measurement_mod)

r3901

2019/04/16

suehring

6.0

B

SVN commit message: Set green-fraction on buildings to zero for now, in order to avoid crashes in the green-heat model (urban_surface_mod)

r3900

2019/04/16

suehring

6.0

B

SVN commit message: Bugfixes in initialization and STG (init_3d_model, radiation_model_mod, synthetic_turbulence_generator)

r3897

2019/04/15

suehring

6.0

C, N

SVN commit message: 2D output of emission fluxes in chemistry; revise check for multigrid coarsening and give a warning instead of an error (chemistry_model_mod, init_pegrid)

r3896

2019/04/15

suehring

6.0

B

SVN commit message: Bugfix, wrong index used for accessing building_pars from PIDS (urban_surface_mod)

r3891

2019/04/12

suehring

6.0

B

SVN commit message: Bugfix in initialization of turbulence generator in case of restart runs and offline nesting (nesting_offl_mod, synthetic_turbulence_generator_mod)

r3890

2019/04/12

suehring

6.0

N (B)

SVN commit message: Check if grid coarsening is possible on subdomain, in order to avoid that multigrid approach effectively reduces to a Gauss-Seidel scheme. (init_pegrid)

r3888

2019/04/12

hellstea

6.0

B

SVN commit message: bugfix in pmc_handle_communicator_mod (pmc_handle_communicator_mod, pmc_interface_mod)

r3886

2019/04/11

suehring

6.0

B

SVN commit message: bugfixes: uninitialized variable in dry deposition; emission output (chemistry_model_mod)

r3885

2019/04/11

kanani

6.0

C, N

SVN commit message: restructure/add location/debug messages (biometeorology_mod, bulk_cloud_model_mod, check_parameters, chem_emissions_mod, chemistry_model_mod, cpulog_mod, data_output_2d,data_output_3d, indoor_model_mod, init_3d_model, init_pegrid, land_surface_model_mod, message, module_interface, odules, multi_agent_system_mod, nesting_offl_mod, netcdf_data_input_mod, palm, parin, plant_canopy_model_mod,pmc_handle_communicator_mod, pmc_interface_mod, prognostic_equations, radiation_model_mod, salsa_mod, surface_layer_fluxes_mod, synthetic_turbulence_generator_mod, time_integration, time_integration_spinup, urban_surface_mod, virtual_flight_mod, wind_turbine_model_mod)

Change:
Started clean-up and re-formatting of location and informative|warning|error messages that are written to the job log file (UNIT=6). Further clean-up is necessary, only relevant location_message(s) shall be printed to keep the job log as clear as possible for regular use (if simulation is successful). The previous formatting of the location_message(s) ---finished made it partly impossible to identify the specific location, hence, the new formatting looks like this:

    -start----  creating virtual PE grids + MPI derived data types  | System time: 13:39:08
    -finished-  creating virtual PE grids + MPI derived data types  | System time: 13:39:08
      --- informative message ---  ID: PA0505   generated by routine: init_grid
         
          Terrain height was internally shifted downwards by    4.00000000000000      meter(s) to save computational resources.
         
          Further information can be found at
          http://palm.muk.uni-hannover.de/trac/wiki/doc/app/errmsg#PA0505

I have added a time stamp which is interesting for evaluating the required computing time of specific model parts already during the simulation. This might e.g. be useful if the simulation hangs at some point. The informative|warning|error messages are now indented with respect to start|finish location messages. Some of the informative|warning|error messages also require clean-up (especially in the new modules), as they hold information that actually belongs into the HEADER|RUN_CONTROL files.

New:
Instead of having too many location_message(s) in the job log which are only printed by core 0 (of the parent (root) domain in case of nesting), we now have the possibility to print additional debug_message(s) to the DEBUG_00* files (UNIT=9) of each processor core, simply by adding the parameter debug_output = .T. to the runtime_parameters namelist. This can be very helpful to narrow down the location of a model crash simply by setting this parameter instead of having to add WRITE statements and re-compile the code. Once the location is narrowed down, set debug_output = .F. and implement your own CALL debug_message (....).

r3884

2019/04/10

Giersch

6.0

C

SVN commit message: id_recycling is only calculated in case of tubulent inflow (init_pegrid)

r3883

2019/04/10

hellstea

6.0

B, C

SVN commit message: Checks and error messages improved and extended. Number of variables renamed etc (pmc_interface_mod, pmc_particle_interface)

r3882

2019/04/10

suehring

6.0

B, C

SVN commit message: Move definition of building-surface properties from declaration block to an extra routine; avoid different type kinds (urban_surface_mod)

r3881

2019/04/10

suehring

6.0

B, C

SVN commit message: Make level 3 initialization of urban-surfaces consistent to input data standard; revise flagging of ground-floor level surfaces at buidlings; bugfixes in level 3 initialization of albedo; bugfix in OpenMP directive; check for zero output timestep in surface output; assure that Obukhov lenght does not become zero (land_surface_model_mod, prognostic_equations, radiation_model_mod, surface_data_output_mod, surface_layer_fluxes_mod, urban_surface_mod)

r3868

2019/04/08

suehring

6.0

C

SVN commit message: More strict limitation of roughness length when it is in the order of the vertical grid spacing (land_surface_model_mod)

r3861

2019/04/04

maronga

6.0

B

SVN commit message: bugfix in radiation model (rad_lw_out_change_0) (radiation_model_mod.f90)

r3860

2019/04/04

raasch

6.0

N

SVN commit message: check added, that it is not allowed to set option -b if the configuration file has been setup for running batch jobs on remote hosts, local time added to terminal output before and after saving output files (palmrun)

r3859

2019/04/03

maronga

6.0

B

SVN commit message: comments in radiation model updated, minor bugfix in palm_csd (radiation_model_mod, palm_csd)

r3858

2019/04/03

suehring

6.0

C

SVN commit message: Avoid local communication in offline nesting when it is not necessary (nesting_offl_mod)

r3856

2019/04/03

suehring

6.0

B

SVN commit message: Bugfix in lsm_init in case no surface fractions are provided (land_surface_model_mod)

r3855

2019/04/03

suehring

6.0

C

SVN commit message: In projection of non-building 3D objects onto numerical grid remove dependency on building_type (init_grid)

r3854

2019/04/02

suehring

6.0

B

SVN commit message: typo and print statement removed (netcdf_data_input_mod, virtual_measurement_mod)

r3850

2019/04/02

raasch

6.0

N

SVN commit message: debug configuration for HLRN-IV system added (.palm.config.atosg_debug)

r3848

2019/04/01

forkel

6.0

B

SVN commit message: some formatting (chemistry_model_mod.f90)

r3847

2019/04/01

suehring

6.0

B

SVN commit message: Adjust message-call for checks that are especially carried out locally. (land_surface_model_mod)

r3846

2019/04/01

suehring

6.0

N

SVN commit message: Check for proper setting of dt_radiation (radiation_model_mod)

r3844

2019/04/01

suehring

6.0

B

SVN commit message: Bugfix in one of the checks (netcdf_data_input_mod)

r3841

2019/03/29

suehring

6.0

C

SVN commit message: In VTK postprocessor add suffix to indicate average data in VTK files (UTIL/surface_output_processing/surface_output_to_vtk)

r3838

2019/03/28

forkel

6.0

N

SVN commit message: some formatting and comments for chem_photolysis_mod.f90

r3837

2019/03/28

knoop

6.0

C

SVN commit message: Added module_interface for prognostic_equations

r3836

2019/03/28

raasch

6.0

N

SVN commit message: default config file for HLRN-IV system in Goettingen added (.palm.config.atosg)

r3835

2019/03/28

kanani

6.0

C

SVN commit message: Formatting, clean-up, clarified/corrected comments (chem_modules)

r3834

2019/03/28

forkel

6.0

B

SVN commit message: removed forgotten ,nvar from USE chem_modules

r3833

2019/03/28

forkel

6.0

C

SVN commit message: removed USE chem_gasphase_mod from chem_modules, apply USE chem_gasphase for nvar, nspec, cs_mech and spc_names instead (SOURCE: chem_modules.f90, chenmistry_model_mod.f90, multi_agent_system.f90, pmc_interface_mod.f90, prognostic_equations.f90, salsa_mod.f90, surface_layer_fluxes.f90, surface_mod.f90, time_integration.f90, virtual_measurement.f90, Makefile; UTILS/chemistry/gasphase_preproc: kpp4palm/src/create_kpp_module.C, kpp4palm/templates/module_header, all .f90 files in mechanisms/def_*)

r3832

2019/03/28

raasch

6.0

N, C

SVN commit message: some routines instrumented with openmp directives, loop reordering for performance optimization (land_surface_model_mod, transpose, urban_surface_mod, wind_turbine_model_mod)

r3831

2019/03/28

forkel

6.0

C

SVN commit message: added nvar to USE chem_gasphase_mod - nvar will not be included in chem_modules anymore soon

r3830

2019/03/28

raasch

6.0

C

SVN commit message: more uninitialized checks removed in gfortran default options (gfortran_default/build_config.yml)

r3829

2019/03/28

raasch

6.0

C

SVN commit message: uninitialized checks removed in gfortran default options (gfortran_default/build_config.yml)

r3828

2019/03/27

raasch

6.0

B, C

SVN commit message: further gfortran warnings activated on testserver, unused variables removed (gfortran_default/build_config.yml, flow_statistics)

r3827

2019/03/27

forkel

6.0

C

SVN commit message: some formatting and reordering of lines

r3826

2019/03/27

raasch

6.0

B

SVN commit message: unused variable removed (radiation_model_mod)

r3823

2019/03/27

raasch

6.0

C

SVN commit message: warnings will be interpreted as errors from now on in case of gfortran on the testserver (gfortran_default/build_config.yml)

r3822

2019/03/27

hellstea

6.0

C

SVN commit message: Temporary increase of the vertical dimension of the parent-grid arrays and workarrc_t is cancelled as unnecessary (pmc_interface_mod)

r3820

2019/03/27

forkel

6.0

C

SVN commit message: renaming of get_mechanismname, do_emiss and do_depo, sorting in chem_modules (chemistry_model_mod.f90, chem_modules.f90, time_integration.f90, prognostic_equations.f90, p3d-files in TESTS/cases/urban_environment(also p3dr), kpp4palm/src/create_kpp_module.C, kpp4palm/templates/module_header, all .f90 files in gasphase_preproc/mechanisms/def_*)

r3819

2019/03/27

hellstea

6.0

C

SVN commit message: Adjustable anterpolation buffer introduced on all nest boundaries (pmc_interface_mod, pmc_handle_communicator_mod)

r3817

2019/03/26

suehring

6.0

B

SVN commit message: Correct output coordinates for vertical surface-element data (surface_data_output_mod)

r3806

2019/03/21

raasch

6.0

B, C

SVN commit message: bugfix: intent of dummy arguments changed to inout, additional check for lateral boundary conditions added (module_interface, parin)

r3805

2019/03/20

raasch

6.0

B, C

SVN commit message: output format adjusted, unused variable removed (spectra_mod, surface_output_to_vtk)

r3803

2019/03/19

hellstea

6.0

C

SVN commit message: Nesting anterpolation domain height reduced (pmc_interface_mod)

r3802

2019/03/17

raasch

6.0

B

SVN commit message: unused variables removed, unused subroutines commented out, type conversion added to avoid compiler warning about constant integer division truncation, script document_changes made bash compatible (random_function_mod, urban_surface_mod, vertical_nesting_mod, inifor_grid, document_changes)

r3800

2019/03/15

forkel

6.0

C

SVN commit message: added leading blanks to dummy statements (kpp4palm/bin/kpp4palm.ksh, and consequently all mechanisms/def_*/*.f90 and chem_gasphase_mod.f90)

r3799

2019/03/15

forkel

6.0

B

SVN commit message: editing in kpp4palm: add statements for avoiding unused variables, remove $Id (all .C and .h files in kpp4palm/src, and consequently all mechanisms/def_*/*.f90 and chem_gasphase_mod.f90)

r3798

2019/03/15

hellstea

6.0

B

SVN commit message: A bug fixed in lateral boundary interpolations (pmc_interface)

r3797

2019/03/15

forkel

6.0

C

SVN commit message: Modifications for OpenMP version by Klaus Ketelsen (prognostic_equations.f90, create_kpp_module.C, fortran_file.C)

r3794

2019/03/15

raasch

6.0

B

SVN commit message: unused variables removed (pmc_interface)

r3793

2019/03/15

raasch

6.0

B

SVN commit message: bugfix for suffix setting in utility makefile (Makefile_utilities)

r3792

2019/03/14

hellstea

6.0

C

SVN commit message: Interpolations improved. Large number of obsolete subroutines removed. All unused variables removed. (pmc_interface_mod)

r3789

2019/03/08

forkel

6.0

B

SVN commit message: Removed unused variables from chem_gasphase_mod.f90 (create_kpp_module.C, expand_decomp.C, fortran_file.C, fortran_file_vec.C, initialize_kpp_ctrl_template.f90, and consequently all mechanisms/def_*/*.f90 and chem_gasphase_mod.f90)

r3787

2019/03/07

raasch

6.0

B

SVN commit message: unused variables removed (salsa_mod, surface_layer_fluxes_mod)

r3786

2019/03/06

raasch

6.0

B

SVN commit message: unused variables removed, interoperable C datatypes introduced in particle type to avoid compiler warnings (bulk_cloud_model_mod, indoor_model_mod, land_surface_model_mod, mod_particle_attributes)

r3784

2019/03/05

forkel

6.0

B

SVN commit message: read from unit 10 now also removed from subroutine chem_header (chemistry_model_mod)

r3783

2019/03/05

forkel

6.0

B

SVN commit message: Removed forgotten write statements an some of the unused variables (chemistry_model_mod)

r3780

2019/03/05

forkel

6.0

C

SVN commit message: removed read from unit 10 in chemistry_model_mod.f90, added get_mechanismname (chemistry_model_mod, chem_modules, modifications in kpp4palm for altering chem_gasphase_mod)

Modifications in kpp4palm in order to create get_mechanismname (kpp4palm.ksh, module_header, create_kpp_module.C/.h) and removal of read from unit 10 in chemistry_model_mod.f90, adding call get_mechanismname instead to check for match whether mechanism name in namelist and chem_gasphase_mod.f90 are matching

r3774

2019/03/04

Salim

6.0

B,C

SVN commit message: rephrase if statement to avoid unallocated array in case of nesting_offline is false (crashing during debug mode)

r3773

2019/03/01

maronga

6.0

B,C

SVN commit message: added output of theta_2m_av and minor revisions in palm_csd (palm_csd, palm_csd_canopy_generator, palm_csd_tools, average_3d_data, sum_up_3d_data)

r3772

2019/02/28

suehring

6.0

B

SVN commit message: Assure that emissions are only at natural (pavement) surfaces in case of parametrized emission mode, not on urban surfaces (chem_emissions_mod, surface_mod)

r3771

2019/02/28

raasch

6.0

B

SVN commit message: rrtmg preprocessor for directives moved/added, save attribute added to temporary pointers to avoid compiler warnings about outlived pointer targets, statement added to avoid compiler warning about unused variable (prognostic_equations, radiation_model_mod)

r3768

2019/02/27

raasch

6.0

B

SVN commit message: variables commented out + statement added to avoid compiler warnings about unused variables (exchange_horiz_2d, user_data_output_dvrp, user_data_output_mask, user_dvrp_coltab, user_flight, user_init_3d_model, user_init_flight, user_init_grid, user_init_plant_canopy, user_init_radiation, user_init_urban_surface, user_lpm_advec, user_lpm_init, user_lpm_set_attributes, user_module, user_spectra)

r3767

2019/02/27

raasch

6.0

B

SVN commit message: unused variables removed from rrd-subroutines parameter list (bulk_cloud_model_mod, chemistry_model_mod, gust_mod, land_surface_model_mod, module_interface, ocean_mod, radiation_model_mod, read_restart_data_mod, salsa_mod, surface_mod, urban_surface_mod, user_module)

r3766

2019/02/26

raasch

6.0

B, C

SVN commit message: unused_variables removed, bugfix in im_define_netcdf_grid argument list, trim added to avoid truncation compiler warnings, save attribute added to local targets to avoid outlive pointer target warning, first argument removed from module_interface_rrd_*, file module_interface reformatted with respect to coding standards, bugfix in surface_data_output_rrd_local (variable k removed) (check_parameters, data_output_2d, data_output_3d, init_masks, module_interface, multi_agent_system_mod, netcdf_interface_mod, read_restart_data_mod, surface_data_output_mod, time_integration_spinup, user_init_land_surface, virtual_measurement_mod)

r3763

2019/02/25

suehring

6.0

C

SVN commit message: Replace work-around for ghost point exchange of 1-byte arrays with specific subroutine (init_grid)

r3762

2019/02/25

suehring

6.0

C

SVN commit message: remove unused variables in surface_data_output_mod and use compiler diretives to declare variables only if netcdf4-output is used (module_interface_mod, surface_data_output_mod)

r3761

2019/02/25

raasch

6.0

B

SVN commit message: unused variables removed, OpenACC directives re-formatted, statements added to avoid compiler warnings (advec_s_bc, check_parameters, diffusion_s, disturb_heatflux, exchange_horiz, exchange_horiz_2d, header, init_3d_model, init_grid, init_pegrid, palm, plant_canopy_model_mod, pmc_child_mod, prognostic_equations, set_slicer_attributes_dvrp, singleton_mod, sum_up_3d_data, surface_mod, swap_timelevel, time_integration, tridia_solver_mod)

r3759

2019/02/21

suehring

6.0

B, C

SVN commit message: Indoor model: provide total building volume; several bugfixes; calculation of building height in IM revised (indoor_model_mod)

r3754

2019/02/19

kanani

6.0

B

SVN commit message: Bugfixes for calculation and I/O of view factors (radiation_model_mod)

Bugfixes:
(from branch resler)

  • add further required MRT factors to read/write_svf,
  • fix for aggregating view factors to eliminate local noise in reflected irradiance at mutually close surfaces (corners, presence of trees) in the angular discretization scheme.

r3753

2019/02/19

dom_dwd_user

6.0

C

SVN commit message: biometeorology_mod.f90: (C) Added automatic setting of mrt_nlevels in case it was not part of radiation_parameters namelist (or set to 0 accidentially). (C) Minor speed improvoemnts in perceived temperature calculations. (C) Perceived temperature regression arrays now declared as PARAMETERs.

r3750

2019/02/19

dom_dwd_user

6.0

C

SVN commit message: biometeorology_mod.f90: (C) Fixed several ugly/bad style issues. Now compiles with -Wall and -pedantic without errors or notices.

r3749

2019/02/19

dom_dwd_user

6.0

B

SVN commit message: biometeorology_mod.f90: (B) Added addittional safety meassures to bio_calculate_thermal_index_maps. (B) Replaced several REAL (un-)equality comparisons.

r3748

2019/02/18

suehring

6.0

B

SVN commit message: Revise conversion of waste-heat flux (do not divide by air density, will be done in diffusion_s)

r3747

2019/02/16

gronemeier

6.0

B

SVN commit message: bugfix: set user-defined statistic regions within new routine user_init_arrays and initialize rmask before this routine is called. This ensures that the correct number of grid points is calculated for each statistic region within init_3d_model. (init_3d_model, module_interface, user_module) bugfix: update former revisions section (modules, parin)

r3746

2019/02/16

gronemeier

6.0

B

SVN commit message: bugfix: do not overwrite name of statistic regions set by namelist (modules, parin)

r3744

2019/02/15

suehring

6.0

B, C, N

SVN commit message: Coupling of indoor model to atmosphere; output of indoor temperatures and waste heat; enable restarts with indoor model; bugfix plant transpiration; bugfix - missing calculation of 10cm temperature (indoor_model_mod, Makefile, module_interface_mod, netcdf_data_input_mod, netcdf_interface_mod, plant_canopy_mod, surface_data_output_mod, surface_layer_fluxes_mod, surface_mod time_integration, urban_surface_mod)

r3742

2019/02/14

dom_dwd_user

6.0

B

SVN commit message: biometeorology_mod.f90: (C) Allocation of the input _av grids was moved to the "sum" section of bio_3d_data_averaging to make sure averaging is only done once! (B) Moved call of bio_calculate_thermal_index_maps from biometeorology module to time_integration (ll 1712) to make sure averaged input is updated before calculating. time_integration.f90: (B) Moved call of bio_calculate_thermal_index_maps from biometeorology module to time_integration (ll 1712) to make sure averaged input is updated before calculating. (biometeorology_mod, time_integration)

r3741

2019/02/13

hellstea

6.0

B

SVN commit message: Bugfix in nest initialization and interpolations (pmc_interface_mod)

r3740

2019/02/13

dom_dwd_user

6.0

B

SVN commit message: biometeorology_mod.f90: (B) Added safety-meassure to catch the case that 'bio_mrt_av' is stated after 'bio_' in the output section of the p3d file. This could lead to double-averaging and thus to silly results otherwise. (biometeorology_mod)

r3739

2019/02/13

dom_dwd_user

6.0

C

SVN commit message: biometeorology_mod.f90: (N) Auto-adjusting thermal_comfort flag if not set by user, but thermal_indices set as output quantities. (C) Renamed flags "bio_" to "do_calculate_" for better readability (C) Removed everything related to "time_bio_results" as this is never used. (C) Moved humidity warning to check_data_output so it will also be triggered if thermal_comofrt flag was auto-set later. (B) Fixed bug in mrt calculation introduced with my commit yesterday. time_integration.f90: (C) Removed everything related to "time_bio_results" as this is never used module_interface.f90: (C) Removed call to empty method bio_check_parameters. (biometeorology_mod, module_interface, time_integration)

r3737

2019/02/12

suehring

6.0

N

SVN commit message: Enable initialization of chemistry variables via dynamic input file; enable mesoscale offline nesting of chemistry variables if data is in dynamic input file (chemistry_model_mod, Makefile, nesting_offl_mod, netcdf_data_input_mod)

r3735

2019/02/12

dom_dwd_user

6.0

C

SVN commit message: biometeorology_mod.f90: (N) Fixed auto-setting of thermal index calculation flags by output as originally proposed by resler. (C) removed bio_pet and outher configuration variables. (C) Updated namelist. (B) Forcing initialization of tmrt_av_grid to avoid mysterious mrt values at i==0, j==0 module_interface_mod.f90: (C) Receiving parameter j (averaging 0==.F./1==.T.) in module_interface_check_data_output from check_parameters.f90. (C) Passing j to bio_check_parameters. check_parameters.f90: (C) Passing j to module_interface_check_data_output (biometeorology_mod, module_interface)

r3731

2019/02/11

suehring

6.0

C

SVN commit message: Consider restart data in time-averaged surface output; revise error message; split initialization of surface-output module (module_interface, surface_data_output_mod)

r3729

2019/02/08

gronemeier

6.0

B

SVN commit message: bugfix: initialize return values to ensure they are set before returning (routine define_geo_coordinates); change order of dimensions for some variables (netcdf_interface_mod)

r3728

2019/02/08

gronemeier

6.0

B

SVN commit message: bugfix: add missing cpp option to encapsule netcdf commands (surface_data_output_mod)

r3727

2019/02/08

gronemeier

6.0

N

SVN commit message: New: surface output available in NetCDF format (Makefile, netcdf_interface_mod, surface_data_output_mod)

r3726

2019/02/07

maronga

6.0

B

SVN commit message: bugfixes in palm_csd (palm_csd, palm_csd_tools)

r3725

2019/02/07

raasch

6.0

C

SVN commit message: modifications to avoid compiler warnings about unused variables, temperton-fft: GOTO statements replaced, file re-formatted corresponding to coding standards, ssh-calls for compilations on remote systems modified to avoid output of login messages on specific systems changed again (palmbuild, reverted as before r3549), error messages for failed restarts extended (palmrun) (buoyancy, data_log, gust_mod, poismg_mod, temperton_fft_mod, wind_turbine_model_mod, palmbuild, palmrun)

r3724

2019/02/06

kanani

6.0

B

SVN commit message: Correct double-used log_point_s units (bulk_cloud_model_mod, time_integration, turbulence_closure_mod)

r3719

2019/02/06

kanani

6.0

B, C

SVN commit message: Correct and clean-up cpu_logs, some overlapping counts (chemistry_model_mod, disturb_heatflux, large_scale_forcing_nudging_mod, ocean_mod, palm, prognostic_equations, synthetic_turbulence_generator_mod, time_integration, time_integration_spinup, turbulence_closure_mod)

r3718

2019/02/06

suehring

6.0

C

SVN commit message: Adjust variable name connections between UC2 and chemistry variables (virtual_measurements_mod)

r3717

2019/02/05

suehring

6.0

B, N

SVN commit message: Bugfix, do not set boundary conditions for pt in neutral runs; enable checks + additional checks for virtual measurements (boundary_conds, module_interface, virtual_measurements_mod)

r3715

2019/02/04

suehring

6.0

C

SVN commit message: Revise check for saturation moisture (land_surface_model_mod)

r3712

2019/02/01

kanani

6.0

C

SVN commit message: Formatting and clean-up (urban_surface_mod)

r3711

2019/01/31

knoop

6.0

N

SVN commit message: Introduced module_interface_init_checks for post-init checks

r3710

2019/01/30

suehring

6.0

N

SVN commit message: Check if building-, water-, pavement-, vegetation- and soil types are within a valid range (land_surface_model_mod, urban_surface_mod)

r3709

2019/01/30

suehring

6.0

B

SVN commit message: Undo bad commit in chemistry preprocessor (accidantly deleted files). (UTIL/chemistry)

r3708

2019/01/30

hellstea

6.0

N, C

SVN commit message: Checks for parent / child grid line matching introduced (pmc_interface_mod)

r3706

2019/01/29

suehring

6.0

C

SVN commit message: unused variables removed (virtual_measurement_mod)

r3704

2019/01/29

suehring

6.0

N, C

SVN commit message: Revision of virtual-measurement module and data output enabled. Further, post-processing tool added to merge distributed virtually sampled data and to output it into NetCDF files. (.palm.iofiles, check_open, module_interface, nesting_offl_mod, netcdf_data_input_mod, radiation_model_mod, time_integration, urban_surface_mod, virtual_measurement_mod, UTIL/combine_virtual_measurements)

r3701

2019/01/26

knoop

6.0

B

SVN commit message: Added module switch for user_module. User module is enabled as soon as the user_parameters namelist is found.

r3700

2019/01/26

knoop

6.0

B

SVN commit message: Moved user_define_netdf_grid into user_module.f90 Added module interface for the definition of additional timeseries

r3697

2019/01/24

hellstea

6.0

B

SVN commit message: bugfix in child initialization in pmc_interface_mod (pmc_interface_mod)

r3696

2019/01/24

suehring

6.0

B

SVN commit message: Bugfix in degrading the order of the advection scheme at non-cyclic lateral domain boundaries (advec_ws)

r3695

2019/01/23

knoop

6.0

C

SVN commit message: Added palmtest build setup and testcase for CUDA-aware-MPI.

r3694

2019/01/23

knoop

6.0

C

SVN commit message: Bugfix: moved OpenACC specific cpp #endif , so cpu_log call is not affected.

r3692

2019/01/23

suehring

6.0

C

SVN commit message: Add check for soil moisture higher than its saturation value (land_surface_model_mod)

r3691

2019/01/23

suehring

6.0

N

SVN commit message: Add output of surface-parallel flow speed (surface_output_mod)

r3688

2019/01/22

maronga

6.0

B

SVN commit message: bugfixes in palm_csd (palm_csd)

r3681

2019/01/18

hellstea

6.0

B,C,N

SVN commit message: Major update of pmc_interface_mod (pmc_interface_mod)

r3668

2019/01/14

maronga

6.0

B,C

SVN commit message: removed most_methods circular and lookup. added improved version of palm_csd (.csd.config.default, palm_csd, palm_csd_canopy_generator, palm_csd_netcdf_interface, palm_csd_tools, check_parameters, land_surface_model_mod, modules, parin, read_restart_data, surface_layer_fluxes_mod, write_restart_data_mod)

r3667

2019/01/10

schwenkel

6.0

B

SVN commit message: Modified rrtmg input files check (radiation_model_mod)

r3665

2019/01/10

raasch

6.0

B, C

SVN commit message: dummy statements added to avoid compiler warnings about unused variables, unused variables removed, ssh-call for submitting batch jobs on remote systems modified again to avoid output of login messages on specific systems (advec_s_pw, advec_s_up, data_output_mask, date_and_time_mod, gust_mod, init_masks, multi_agent_system_mod, netcdf_interface_mod, virtual_measurement_mod, palmrun)

r3664

2019/01/09

forkel

6.0

B

SVN commit message: Replaced misplaced location message by @todo (in chemistry_model_mod)

r3661

2019/01/08

suehring

6.0

B, C

SVN commit message: Split loops in advec_ws in order to reduce bit queries; Introduce new parameter to better control order degradation of advection scheme at non-cyclic boundaries; Remove setting of Neumann conditions for horizontal velocity variances; Minor bugfix in divergence correction in advection scheme (only has implications at downward-facing wall surfaces) (advec_ws, init_grid)

r3654

2019/01/07

suehring

6.0

B

SVN commit message: Disable misplaced location message in chemistry_model_mod (chemistry_model_mod)

r3653

2019/01/07

forkel

6.0

C

SVN commit message: parameter chem_mechanism added to &chemistry_parameters (adapted urban_environment_p3d and urban_environment_restart_p3dr to parameter check from rev 3652)

r3652

2019/01/07

forkel

6.0

C

SVN commit message: Checks added for chemistry mechanism, parameter chem_mechanism added (in chemistry_model_mod and chem_modules)

r3651

2019/01/07

suehring

6.0

B

SVN commit message: Bugfix, restore OMP END PARALLEL block (accidantly remove in -r 3637) (flow_statistics)

r3650

2019/01/04

kanani

6.0

B, N

SVN commit message: Bugfix/additions to enable restarts with biometeorology (biometeorology_mod, module_interface)

r3649

2019/01/02

suehring

6.0

B

SVN commit message: Bugfix, initialize strings with intent(out) attribute, delete debug prints (module_interface, parin)

r3648

2019/01/02

suehring

6.0

C

SVN commit message: Rename surface_output_mod into surface_data_output_mod, same with all corresponding subroutines (init_3d_model, Makefile, modules, module_interface, palm, surface_data_output_mod, time_integration)

r3647

2019/01/02

kanani

6.0

B, C

SVN commit message: Bugfix: add time_since_reference_point to IF clause for data_output calls (time_integration) (time_integration)

Bugfix: The query time_since_reference_point >= skip_time_* had to be added to the IF clauses around calls to data_output_* routines, otherwise the chosen values for skip_time_* parameters don't come into affect in case namelist parameters dt_do* = 0.0 (see ticket:798).

Change: Clean up indoor_model and biometeorology model calls.

Last modified 32 hours ago Last modified on Jun 19, 2019 7:09:04 AM