Ignore:
Timestamp:
Sep 24, 2009 10:39:14 AM (12 years ago)
Author:
raasch
Message:

New:
---

Adapted for machine lck
(mrun, mbuild, subjob)

bc_lr/bc_ns in most subroutines replaced by LOGICAL variables bc_lr_cyc,
bc_ns_cyc for speed optimization
(check_parameters, diffusion_u, diffusion_v, diffusion_w, modules)

Additional timestep criterion in case of simulations with plant canopy (timestep)

Check for illegal entries in section_xy|xz|yz that exceed nz+1|ny+1|nx+1
(check_parameters)

Clipping of dvrp output implemented. Default colourtable for particles
implemented, particle attributes (color, dvrp_size) can be set with new
parameters particle_color, particle_dvrpsize, color_interval,
dvrpsize_interval (init_dvrp, data_output_dvrp, modules, user_data_output_dvrp).
Slicer attributes (dvrp) are set with new routine set_slicer_attributes_dvrp
and are controlled with existing parameters slicer_range_limits.
(set_slicer_attributes_dvrp)

Ocean atmosphere coupling allows to use independent precursor runs in order
to account for different spin-up times. The time when coupling has to be
started is given by new inipar parameter coupling_start_time. The precursor
ocean run has to be started using new mrun option "-y" in order to add
appendix "_O" to all output files.
(check_for_restart, check_parameters, data_output_2d, data_output_3d,
data_output_profiles, data_output_ptseries, data_output_spectra,
data_output_tseries, header, init_coupling, modules, mrun,
parin, read_var_list, surface_coupler, time_integration, write_var_list)

Polygon reduction for topography and ground plate isosurface. Reduction level
for buildings can be chosen with parameter cluster_size. (init_dvrp)

External pressure gradient (check_parameters, header, init_3d_model, modules,
parin, prognostic_equations, read_var_list, write_var_list)

New topography case 'single_street_canyon' (header, init_grid, modules, parin,
read_var_list, user_check_parameters, user_header, user_init_grid, write_var_list)

Option to predefine a target bulk velocity for conserve_volume_flow
(check_parameters, header, init_3d_model, modules, parin, read_var_list,
write_var_list)

Option for user defined 2D data output in xy cross sections at z=nzb+1
(data_output_2d, user_data_output_2d)

xy cross section output of surface heatfluxes (latent, sensible)
(average_3d_data, check_parameters, data_output_2d, modules, read_3d_binary,
sum_up_3d_data, write_3d_binary)

average_3d_data, check_for_restart, check_parameters, data_output_2d, data_output_3d, data_output_dvrp, data_output_profiles, data_output_ptseries, data_output_spectra, data_output_tseries, init_coupling, init_dvrp, init_grid, init_3d_model, header, mbuild, modules, mrun, package_parin, parin, prognostic_equations, read_3d_binary, read_var_list, subjob, surface_coupler, timestep, time_integration, user_check_parameters, user_data_output_2d, user_data_output_dvrp, user_header, user_init_grid, write_3d_binary, write_var_list

New: set_particle_attributes, set_slicer_attributes_dvrp

Changed:


lcmuk changed to lc to avoid problems with Intel compiler on sgi-ice
(poisfft)

For extended NetCDF files, the updated title attribute includes an update of
time_average_text where appropriate. (netcdf)

In case of restart runs without extension, initial profiles are not written
to NetCDF-file anymore. (data_output_profiles, modules, read_var_list, write_var_list)

Small change in formatting of the message handling routine concering the output in the
job protocoll. (message)

initializing_actions='read_data_for_recycling' renamed to 'cyclic_fill', now
independent of turbulent_inflow (check_parameters, header, init_3d_model)

2 NetCDF error numbers changed. (data_output_3d)

A Link to the website appendix_a.html is printed for further information
about the possible errors. (message)

Temperature gradient criterion for estimating the boundary layer height
replaced by the gradient criterion of Sullivan et al. (1998). (flow_statistics)

NetCDF unit attribute in timeseries output in case of statistic regions added
(netcdf)

Output of NetCDF messages with aid of message handling routine.
(check_open, close_file, data_output_2d, data_output_3d,
data_output_profiles, data_output_ptseries, data_output_spectra,
data_output_tseries, netcdf, output_particles_netcdf)

Output of messages replaced by message handling routine.
(advec_particles, advec_s_bc, buoyancy, calc_spectra, check_for_restart,
check_open, coriolis, cpu_log, data_output_2d, data_output_3d, data_output_dvrp,
data_output_profiles, data_output_spectra, fft_xy, flow_statistics, header,
init_1d_model, init_3d_model, init_dvrp, init_grid, init_particles, init_pegrid,
netcdf, parin, plant_canopy_model, poisfft_hybrid, poismg, read_3d_binary,
read_var_list, surface_coupler, temperton_fft, timestep, user_actions,
user_data_output_dvrp, user_dvrp_coltab, user_init_grid, user_init_plant_canopy,
user_parin, user_read_restart_data, user_spectra )

Maximum number of tails is calculated from maximum number of particles and
skip_particles_for_tail (init_particles)

Value of vertical_particle_advection may differ for each particle group
(advec_particles, header, modules)

First constant in array den also defined as type double. (eqn_state_seawater)

Parameter dvrp_psize moved from particles_par to dvrp_graphics_par. (package_parin)

topography_grid_convention moved from userpar to inipar (check_parameters,
header, parin, read_var_list, user_check_parameters, user_header,
user_init_grid, user_parin, write_var_list)

Default value of grid_matching changed to strict.

Adjustments for runs on lcxt4 (necessary due to an software update on CRAY) and
for coupled runs on ibmy (mrun, subjob)

advec_particles, advec_s_bc, buoyancy, calc_spectra, check_for_restart, check_open, check_parameters, close_file, coriolis, cpu_log, data_output_2d, data_output_3d, data_output_dvrp, data_output_profiles, data_output_ptseries, data_output_spectra, data_output_tseries, eqn_state_seawater, fft_xy, flow_statistics, header, init_1d_model, init_3d_model, init_dvrp, init_grid, init_particles, init_pegrid, message, mrun, netcdf, output_particles_netcdf, package_parin, parin, plant_canopy_model, poisfft, poisfft_hybrid, poismg, read_3d_binary, read_var_list, sort_particles, subjob, user_check_parameters, user_header, user_init_grid, user_parin, surface_coupler, temperton_fft, timestep, user_actions, user_data_output_dvrp, user_dvrp_coltab, user_init_grid, user_init_plant_canopy, user_parin, user_read_restart_data, user_spectra, write_var_list

Errors:


Bugfix: Initial hydrostatic pressure profile in case of ocean runs is now
calculated in 5 iteration steps. (init_ocean)

Bugfix: wrong sign in buoyancy production of ocean part in case of not using
the reference density (only in 3D routine production_e) (production_e)

Bugfix: output of averaged 2d/3d quantities requires that an avaraging
interval has been set, respective error message is included (check_parameters)

Bugfix: Output on unit 14 only if requested by write_binary.
(user_last_actions)

Bugfix to avoid zero division by km_neutral (production_e)

Bugfix for extended NetCDF files: In order to avoid 'data mode' errors if
updated attributes are larger than their original size, NF90_PUT_ATT is called
in 'define mode' enclosed by NF90_REDEF and NF90_ENDDEF calls. This implies a
possible performance loss; an alternative strategy would be to ensure equal
attribute size in a job chain. (netcdf)

Bugfix: correction of initial volume flow for non-flat topography (init_3d_model)
Bugfix: zero initialization of arrays within buildings for 'cyclic_fill' (init_3d_model)

Bugfix: to_be_resorted => s_av for time-averaged scalars (data_output_2d, data_output_3d)

Bugfix: error in formatting the output (message)

Bugfix: avoid that ngp_2dh_s_inner becomes zero (init_3_model)

Typographical error: unit of wpt in dots_unit (modules)

Bugfix: error in check, if particles moved further than one subdomain length.
This check must not be applied for newly released particles. (advec_particles)

Bugfix: several tail counters are initialized, particle_tail_coordinates is
only written to file if its third index is > 0, arrays for tails are allocated
with a minimum size of 10 tails if there is no tail initially (init_particles,
advec_particles)

Bugfix: pressure included for profile output (check_parameters)

Bugfix: Type of count and count_rate changed to default INTEGER on NEC machines
(cpu_log)

Bugfix: output if particle time series only if particle advection is switched
on. (time_integration)

Bugfix: qsws was calculated in case of constant heatflux = .FALSE. (prandtl_fluxes)

Bugfix: averaging along z is not allowed for 2d quantities (e.g. u* and z0) (data_output_2d)

Typographical errors (netcdf)

If the inversion height calculated by the prerun is zero, inflow_damping_height
must be explicitly specified (init_3d_model)

Small bugfix concerning 3d 64bit netcdf output format (header)

Bugfix: dt_fixed removed from the restart file, because otherwise, no change
from a fixed to a variable timestep would be possible in restart runs.
(read_var_list, write_var_list)

Bugfix: initial setting of time_coupling in coupled restart runs (time_integration)

advec_particles, check_parameters, cpu_log, data_output_2d, data_output_3d, header, init_3d_model, init_particles, init_ocean, modules, netcdf, prandtl_fluxes, production_e, read_var_list, time_integration, user_last_actions, write_var_list

File:
1 edited

Legend:

Unmodified
Added
Removed
  • palm/trunk/SOURCE/CURRENT_MODIFICATIONS

    r388 r392  
    11New:
    22---
    3 
    4 Adapted for machine lck
    5 (mrun, mbuild, subjob)
    6 
    7 bc_lr/bc_ns  in most subroutines replaced by LOGICAL variables bc_lr_cyc,
    8 bc_ns_cyc for speed optimization
    9 (check_parameters, diffusion_u, diffusion_v, diffusion_w, modules)
    10 
    11 Additional timestep criterion in case of simulations with plant canopy (timestep)
    12 
    13 Check for illegal entries in section_xy|xz|yz that exceed nz+1|ny+1|nx+1
    14 (check_parameters)
    15 
    16 Clipping of dvrp output implemented. Default colourtable for particles
    17 implemented, particle attributes (color, dvrp_size) can be set with new
    18 parameters particle_color, particle_dvrpsize, color_interval,
    19 dvrpsize_interval (init_dvrp, data_output_dvrp, modules, user_data_output_dvrp).
    20 Slicer attributes (dvrp) are set with new routine set_slicer_attributes_dvrp
    21 and are controlled with existing parameters slicer_range_limits.
    22 (set_slicer_attributes_dvrp)
    23 
    24 Ocean atmosphere coupling allows to use independent precursor runs in order
    25 to account for different spin-up times. The time when coupling has to be
    26 started is given by new inipar parameter coupling_start_time. The precursor
    27 ocean run has to be started using new mrun option "-y" in order to add
    28 appendix "_O" to all output files.
    29 (check_for_restart, check_parameters, data_output_2d, data_output_3d,
    30 data_output_profiles, data_output_ptseries, data_output_spectra,
    31 data_output_tseries, header, init_coupling, modules, mrun,
    32 parin, read_var_list, surface_coupler, time_integration, write_var_list)
    33 
    34 Polygon reduction for topography and ground plate isosurface. Reduction level
    35 for buildings can be chosen with parameter cluster_size. (init_dvrp)
    36 
    37 External pressure gradient (check_parameters, header, init_3d_model, modules,
    38 parin, prognostic_equations, read_var_list, write_var_list)
    39 
    40 New topography case 'single_street_canyon' (header, init_grid, modules, parin,
    41 read_var_list, user_check_parameters, user_header, user_init_grid, write_var_list)
    42 
    43 Option to predefine a target bulk velocity for conserve_volume_flow
    44 (check_parameters, header, init_3d_model, modules, parin, read_var_list,
    45 write_var_list)
    46 
    47 Option for user defined 2D data output in xy cross sections at z=nzb+1
    48 (data_output_2d, user_data_output_2d)
    49 
    50 xy cross section output of surface heatfluxes (latent, sensible)
    51 (average_3d_data, check_parameters, data_output_2d, modules, read_3d_binary,
    52 sum_up_3d_data, write_3d_binary)
    53 
    54 
    55 average_3d_data, check_for_restart, check_parameters, data_output_2d, data_output_3d, data_output_dvrp, data_output_profiles, data_output_ptseries, data_output_spectra, data_output_tseries, init_coupling, init_dvrp, init_grid, init_3d_model, header, mbuild, modules, mrun, package_parin, parin, prognostic_equations, read_3d_binary, read_var_list, subjob, surface_coupler, timestep, time_integration, user_check_parameters, user_data_output_2d, user_data_output_dvrp, user_header, user_init_grid, write_3d_binary, write_var_list
    56 
    57 New: set_particle_attributes, set_slicer_attributes_dvrp
    583
    594
    605Changed:
    616-------
    62 __lcmuk changed to __lc to avoid problems with Intel compiler on sgi-ice
    63 (poisfft)
    64 
    65 For extended NetCDF files, the updated title attribute includes an update of
    66 time_average_text where appropriate. (netcdf)
    67 
    68 In case of restart runs without extension, initial profiles are not written
    69 to NetCDF-file anymore. (data_output_profiles, modules, read_var_list, write_var_list)
    70 
    71 Small change in formatting of the message handling routine concering the output in the
    72 job protocoll. (message)
    73 
    74 initializing_actions='read_data_for_recycling' renamed to 'cyclic_fill', now
    75 independent of turbulent_inflow (check_parameters, header, init_3d_model)
    76 
    77 2 NetCDF error numbers changed. (data_output_3d)
    78 
    79 A Link to the website appendix_a.html is printed for further information
    80 about the possible errors. (message)
    81 
    82 Temperature gradient criterion for estimating the boundary layer height
    83 replaced by the gradient criterion of Sullivan et al. (1998). (flow_statistics)
    84 
    85 NetCDF unit attribute in timeseries output in case of statistic regions added
    86 (netcdf)
    87 
    88 Output of NetCDF messages with aid of message handling routine.
    89 (check_open, close_file, data_output_2d, data_output_3d,
    90 data_output_profiles, data_output_ptseries, data_output_spectra,
    91 data_output_tseries, netcdf, output_particles_netcdf)
    92 
    93 Output of messages replaced by message handling routine.
    94 (advec_particles, advec_s_bc, buoyancy, calc_spectra, check_for_restart,
    95 check_open, coriolis, cpu_log, data_output_2d, data_output_3d, data_output_dvrp,
    96 data_output_profiles, data_output_spectra, fft_xy, flow_statistics, header,
    97 init_1d_model, init_3d_model, init_dvrp, init_grid, init_particles, init_pegrid,
    98 netcdf, parin, plant_canopy_model, poisfft_hybrid, poismg, read_3d_binary,
    99 read_var_list, surface_coupler, temperton_fft, timestep, user_actions,
    100 user_data_output_dvrp, user_dvrp_coltab, user_init_grid, user_init_plant_canopy,
    101 user_parin, user_read_restart_data, user_spectra )
    102 
    103 Maximum number of tails is calculated from maximum number of particles and
    104 skip_particles_for_tail (init_particles)
    105 
    106 Value of vertical_particle_advection may differ for each particle group
    107 (advec_particles, header, modules)
    108 
    109 First constant in array den also defined as type double. (eqn_state_seawater)
    110 
    111 Parameter dvrp_psize moved from particles_par to dvrp_graphics_par. (package_parin)
    112 
    113 topography_grid_convention moved from userpar to inipar (check_parameters,
    114 header, parin, read_var_list, user_check_parameters, user_header,
    115 user_init_grid, user_parin, write_var_list)
    116 
    117 Default value of grid_matching changed to strict.
    118 
    119 Adjustments for runs on lcxt4 (necessary due to an software update on CRAY) and
    120 for coupled runs on ibmy (mrun, subjob)
    121 
    122 advec_particles, advec_s_bc, buoyancy, calc_spectra, check_for_restart, check_open, check_parameters, close_file, coriolis, cpu_log, data_output_2d, data_output_3d, data_output_dvrp, data_output_profiles, data_output_ptseries, data_output_spectra, data_output_tseries, eqn_state_seawater, fft_xy, flow_statistics, header, init_1d_model, init_3d_model, init_dvrp, init_grid, init_particles, init_pegrid, message, mrun, netcdf, output_particles_netcdf, package_parin, parin, plant_canopy_model, poisfft, poisfft_hybrid, poismg, read_3d_binary, read_var_list, sort_particles, subjob, user_check_parameters, user_header, user_init_grid, user_parin, surface_coupler, temperton_fft, timestep, user_actions, user_data_output_dvrp, user_dvrp_coltab, user_init_grid, user_init_plant_canopy, user_parin, user_read_restart_data, user_spectra, write_var_list
    1237
    1248
    1259Errors:
    12610------
    127 Bugfix: Initial hydrostatic pressure profile in case of ocean runs is now
    128 calculated in 5 iteration steps. (init_ocean)
    12911
    130 Bugfix: wrong sign in buoyancy production of ocean part in case of not using
    131 the reference density (only in 3D routine production_e) (production_e)
    13212
    133 Bugfix: output of averaged 2d/3d quantities requires that an avaraging
    134 interval has been set, respective error message is included (check_parameters)
    135 
    136 Bugfix: Output on unit 14 only if requested by write_binary.
    137 (user_last_actions)
    138 
    139 Bugfix to avoid zero division by km_neutral (production_e)
    140 
    141 Bugfix for extended NetCDF files: In order to avoid 'data mode' errors if
    142 updated attributes are larger than their original size, NF90_PUT_ATT is called
    143 in 'define mode' enclosed by NF90_REDEF and NF90_ENDDEF calls. This implies a
    144 possible performance loss; an alternative strategy would be to ensure equal
    145 attribute size in a job chain. (netcdf)
    146 
    147 Bugfix: correction of initial volume flow for non-flat topography (init_3d_model)
    148 Bugfix: zero initialization of arrays within buildings for 'cyclic_fill' (init_3d_model)
    149 
    150 Bugfix: to_be_resorted => s_av for time-averaged scalars (data_output_2d, data_output_3d)
    151 
    152 Bugfix: error in formatting the output (message)
    153 
    154 Bugfix: avoid that ngp_2dh_s_inner becomes zero (init_3_model)
    155 
    156 Typographical error: unit of wpt in dots_unit (modules)
    157 
    158 Bugfix: error in check, if particles moved further than one subdomain length.
    159 This check must not be applied for newly released particles. (advec_particles)
    160 
    161 Bugfix: several tail counters are initialized, particle_tail_coordinates is
    162 only written to file if its third index is > 0, arrays for tails are allocated
    163 with a minimum size of 10 tails if there is no tail initially (init_particles,
    164 advec_particles)
    165 
    166 Bugfix: pressure included for profile output (check_parameters)
    167 
    168 Bugfix: Type of count and count_rate changed to default INTEGER on NEC machines
    169 (cpu_log)
    170 
    171 Bugfix: output if particle time series only if particle advection is switched
    172 on. (time_integration)
    173 
    174 Bugfix: qsws was calculated in case of constant heatflux = .FALSE. (prandtl_fluxes)
    175 
    176 Bugfix: averaging along z is not allowed for 2d quantities (e.g. u* and z0) (data_output_2d)
    177 
    178 Typographical errors (netcdf)
    179 
    180 If the inversion height calculated by the prerun is zero, inflow_damping_height
    181 must be explicitly specified (init_3d_model)
    182 
    183 Small bugfix concerning 3d 64bit netcdf output format (header)
    184 
    185 Bugfix: dt_fixed removed from the restart file, because otherwise, no change
    186 from a fixed to a variable timestep would be possible in restart runs.
    187 (read_var_list, write_var_list)
    188 
    189 Bugfix: initial setting of time_coupling in coupled restart runs (time_integration)
    190 
    191 advec_particles, check_parameters, cpu_log, data_output_2d, data_output_3d, header, init_3d_model, init_particles, init_ocean, modules, netcdf, prandtl_fluxes, production_e, read_var_list, time_integration, user_last_actions, write_var_list
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