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Changeset 1657 for palm


Ignore:
Timestamp:
Sep 17, 2015 6:31:36 PM (9 years ago)
Author:
knoop
Message:

split .mrun.config.default into version for ifort and gfortran + Bugfix: Seminar lectures

Location:
palm/trunk
Files:
10 edited
1 moved

Legend:

Unmodified
Added
Removed

  • palm/trunk/SCRIPTS/.mrun.config.cuhk

    r1446 r1657  
    1 #$Id: .mrun.config.default 1231 2013-09-20 11:25:45Z kanani $
     1#$Id: .mrun.config.cuhk 1231 2013-09-20 11:25:45Z knoop $
    22#column 1          column 2                                   column 3
    33#name of variable  value of variable (~ must not be used)     scope
    … …  
    2222#
    2323# The next block contains all informations for compiling the PALM code
    24 # and for generating and running the PALM executable using MPI. Replace all
    25 # required paths (given in <>) by the respective paths valid on your host.
    26 # Also replace <hi> by your host identifier (see above <hi> example "lcmy")
    27 # in each line!
     24# and for generating and running the PALM executable using MPI.
    2825# Compilernames, cpp-options and compiler-options are assuming
    29 # an Intel-Compiler and mpich2 on this host! Please change
     26# an GNU-Compiler and mpich2 on this host! Please change
    3027# appropriately, if you are using a different compiler / MPI-Version.
    3128#
    32 %tmp_user_catalog  /home/student/tmp                             lccuhk parallel
     29# CUHK
     30%remote_username   student                                       lccuhk parallel
     31%tmp_user_catalog  $HOME/palm/tmp                                lccuhk parallel
    3332%compiler_name     mpif90                                        lccuhk parallel
    34 %compiler_name_ser ifort                                         lccuhk parallel
    35 %cpp_options       -cpp:-D__mpi2:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf   lccuhk parallel
    36 %netcdf_inc        -I:/opt/netcdf-3.6.3/include                  lccuhk parallel
    37 %netcdf_lib        -L/opt/netcdf-3.6.3/lib:-lnetcdf              lccuhk parallel
    38 %mopts             -j:4                                          lccuhk parallel
    39 %fopts             -xS:-r8:-nbs:-convert:little_endian:-I:/opt/mpich2/include  lccuhk parallel
    40 %lopts             -xS:-r8:-nbs:-Vaxlib:-L:/opt/mpich2/lib                     lccuhk parallel
    41 %remote_username    student                                      lccuhk parallel
    42 # if you want to use your own hostfile, uncomment next line
    43 #%hostfile          $base_directory/.hostfile                    lccuhk parallel
    44 # if you want to load modules on the remote host, use the following line
    45 #%modules           <replace_by_the_modules_to_be_loaded>        lccuhk parallel
    46 # if you want to perform initial commands on ssh connections, use the following line
    47 #%login_init_cmd    <replace_by_the_inital_commands>             lccuhk parallel
    48 #%login_init_cmd    <replace_by_the_inital_commands>             lccuhk parallel
     33%compiler_name_ser gfortran                                      lccuhk parallel
     34%cpp_options       -cpp:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__lc:-D__netcdf:-D__parallel   lccuhk parallel
     35%netcdf_inc        -I:$HOME/opt/netcdf-3.6.3/include             lccuhk parallel
     36%netcdf_lib        -L:$HOME/opt/netcdf-3.6.3/lib:-lnetcdf        lccuhk parallel
     37%mopts             -j:8                                          lccuhk parallel
     38%fopts             -Ofast                                        lccuhk parallel
     39%lopts             -Ofast                                        lccuhk parallel
    4940#
    50 #
    51 %tmp_user_catalog  /home/student/tmp                             lccuhk parallel trace
     41# CUHK debug/trace mode
     42%remote_username   student                                       lccuhk parallel trace
     43%tmp_user_catalog  $HOME/palm/tmp                                lccuhk parallel trace
    5244%compiler_name     mpif90                                        lccuhk parallel trace
    53 %compiler_name_ser ifort                                         lccuhk parallel trace
    54 %cpp_options       -cpp:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf   lccuhk parallel trace
    55 %netcdf_inc        -I:/opt/netcdf-3.6.3/include                  lccuhk parallel trace
    56 %netcdf_lib        -L/opt/netcdf-3.6.3/lib:-lnetcdf              lccuhk parallel trace
    57 %mopts             -j:4                                          lccuhk parallel trace
    58 %fopts             -C:-check:nooutput_conversion:-fpe0:-debug:-traceback:-g:-w:-xT:-O0:-cpp:-r8:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-convert:little_endian  lccuhk parallel trace
    59 %lopts             -C:-check:nooutput_conversion:-fpe0:-debug:-traceback:-g:-w:-xT:-O0:-cpp:-r8:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-Vaxlib  lccuhk parallel trace
    60 %remote_username    student                                      lccuhk parallel trace
    61 # if you want to use your own hostfile, uncomment next line
    62 #%hostfile          $base_directory/.hostfile                    lccuhk parallel trace
    63 # if you want to load modules on the remote host, use the following line
    64 #%modules           <replace_by_the_modules_to_be_loaded>        lccuhk parallel trace
    65 # if you want to perform initial commands on ssh connections, use the following line
    66 #%login_init_cmd    <replace_by_the_inital_commands>             lccuhk parallel trace
     45%compiler_name_ser gfortran                                      lccuhk parallel trace
     46%cpp_options       -cpp:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__lc:-D__netcdf:-D__parallel   lccuhk parallel trace
     47%netcdf_inc        -I:$HOME/opt/netcdf-3.6.3/include             lccuhk parallel trace
     48%netcdf_lib        -L:$HOME/opt/netcdf-3.6.3/lib:-lnetcdf        lccuhk parallel trace
     49%mopts             -j:8                                          lccuhk parallel trace
     50%fopts             -O0:-Wall:-fbacktrace                         lccuhk parallel trace
     51%lopts             -O0:-Wall:-fbacktrace                         lccuhk parallel trace
    6752#
    6853#

  • palm/trunk/SCRIPTS/.mrun.config.gfortran

    r1648 r1657  
    1 #$Id: .mrun.config.imuknb 1446 2014-08-07 10:08:56Z maronga $
     1#$Id: .mrun.config.gfortran 1446 2014-08-07 10:08:56Z knoop $
    22#column 1          column 2                                   column 3
    33#name of variable  value of variable (~ must not be used)     scope
    … …  
    4141%fopts             -Ofast                                        <hi> parallel
    4242%lopts             -Ofast                                        <hi> parallel
     43# if you want to use your own hostfile, uncomment next line
     44#%hostfile          $base_directory/.hostfile                    <hi> parallel
     45# if you want to load modules on the remote host, use the following line
     46#%modules           <replace_by_the_modules_to_be_loaded>        <hi> parallel
     47# if you want to perform initial commands on ssh connections, use the following line
     48#%login_init_cmd    <replace_by_the_inital_commands>             <hi> parallel
    4349#
    4450#
    … …  
    5359%fopts             -O0:-Wall:-fbacktrace                         <hi> parallel trace
    5460%lopts             -O0:-Wall:-fbacktrace                         <hi> parallel trace
     61# if you want to use your own hostfile, uncomment next line
     62#%hostfile          $base_directory/.hostfile                    <hi> parallel trace
     63# if you want to load modules on the remote host, use the following line
     64#%modules           <replace_by_the_modules_to_be_loaded>        <hi> parallel trace
     65# if you want to perform initial commands on ssh connections, use the following line
     66#%login_init_cmd    <replace_by_the_inital_commands>             <hi> parallel trace
     67#
    5568#
    5669%write_binary                true                             restart

  • palm/trunk/SCRIPTS/.mrun.config.ifort

    r1656 r1657  
    3030# appropriately, if you are using a different compiler / MPI-Version.
    3131#
    32 %tmp_user_catalog  /tmp                                          <hi> parallel
     32#
     33%remote_username   <replace_with_your_local_username>            <hi> parallel
     34%tmp_user_catalog  $HOME/palm/tmp                                <hi> parallel
    3335%compiler_name     mpif90                                        <hi> parallel
    3436%compiler_name_ser ifort                                         <hi> parallel
    3537%cpp_options       -cpp:-D__mpi2:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__intel_compiler   <hi> parallel
    3638%netcdf_inc        -I:<replace_by_netcdf_include_path>           <hi> parallel
    37 %netcdf_lib        -L<replace_by_netcdf_library_path>:-lnetcdf   <hi> parallel
     39%netcdf_lib        -L:<replace_by_netcdf_library_path>:-lnetcdf  <hi> parallel
    3840%mopts             -j:4                                          <hi> parallel
    3941%fopts             -I:<replace_by_mpi_include path>:-fpe0:-O3:-xHost:-fp-model:source:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-diag-disable:8290,8291   <hi> parallel
    … …  
    4143# if you want to use your own hostfile, uncomment next line
    4244#%hostfile          $base_directory/.hostfile                    <hi> parallel
    43 # if you want this host to be used as a remote host, uncomment next line
    44 #%remote_username   <replace_by_your_username_on_this_host>      <hi> parallel
    4545# if you want to load modules on the remote host, use the following line
    4646#%modules           <replace_by_the_modules_to_be_loaded>        <hi> parallel
    … …  
    4949#
    5050#
    51 %tmp_user_catalog  /tmp                                          <hi> parallel trace
     51%remote_username   <replace_with_your_local_username>            <hi> parallel trace
     52%tmp_user_catalog  $HOME/palm/tmp                                <hi> parallel trace
    5253%compiler_name     mpif90                                        <hi> parallel trace
    5354%compiler_name_ser ifort                                         <hi> parallel trace
    5455%cpp_options       -cpp:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__intel_compiler   <hi> parallel trace
    5556%netcdf_inc        -I:<replace_by_netcdf_include_path>           <hi> parallel trace
    56 %netcdf_lib        -L<replace_by_netcdf_library_path>:-lnetcdf   <hi> parallel trace
     57%netcdf_lib        -L:<replace_by_netcdf_library_path>:-lnetcdf  <hi> parallel trace
    5758%mopts             -j:4                                          <hi> parallel trace
    5859%fopts             -C:-check:nooutput_conversion:-fpe0:-debug:-traceback:-g:-w:-O0:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs  <hi> parallel trace
    … …  
    6061# if you want to use your own hostfile, uncomment next line
    6162#%hostfile          $base_directory/.hostfile                    <hi> parallel trace
    62 # if you want this host to be used as a remote host, uncomment next line
    63 #%remote_username   <replace_by_your_username_on_this_host>      <hi> parallel trace
    6463# if you want to load modules on the remote host, use the following line
    6564#%modules           <replace_by_the_modules_to_be_loaded>        <hi> parallel trace

  • palm/trunk/TUTORIAL/SOURCE/exercise_cbl.tex

    r1649 r1657  
    202202\end{frame}
    203203
     204\bgroup
     205\setbeamercolor{background canvas}{bg=white}
     206\begin{frame}[plain,noframenumbering]{}
     207\end{frame}
     208\egroup
     209
    204210% Folie 8
    205211\section{Results}

  • palm/trunk/TUTORIAL/SOURCE/exercise_cumulus.tex

    r1649 r1657  
    239239\end{frame}
    240240
     241\bgroup
     242\setbeamercolor{background canvas}{bg=white}
     243\begin{frame}[plain,noframenumbering]{}
     244\end{frame}
     245\egroup
     246
    241247% Folie 9
    242248\section{Results}

  • palm/trunk/TUTORIAL/SOURCE/exercise_interface.tex

    r1650 r1657  
    155155\end{frame}
    156156
     157\bgroup
     158\setbeamercolor{background canvas}{bg=white}
     159\begin{frame}[plain,noframenumbering]{}
     160\end{frame}
     161\egroup
     162
    157163% Folie 6
    158164\section{Results \quad \, }

  • palm/trunk/TUTORIAL/SOURCE/exercise_neutral.tex

    r1534 r1657  
    138138 \end{frame}
    139139
     140\bgroup
     141\setbeamercolor{background canvas}{bg=white}
     142\begin{frame}[plain,noframenumbering]{}
     143\end{frame}
     144\egroup
     145
    140146% Folie 6
    141147\section{Results}

  • palm/trunk/TUTORIAL/SOURCE/exercise_topography.tex

    r1649 r1657  
    241241\end{frame}
    242242
     243\bgroup
     244\setbeamercolor{background canvas}{bg=white}
     245\begin{frame}[plain,noframenumbering]{}
     246\end{frame}
     247\egroup
     248
    243249\section{Results}
    244250\subsection{Results}

  • palm/trunk/TUTORIAL/SOURCE/final_remarks.tex

    r1649 r1657  
    100100   \vspace{-2mm}
    101101   \begin{itemize}
    102       \item<2->{... about the current model status (PALM 4.0)  \\ \par\medskip
     102      \item<1->{... about the current model status (PALM 4.0)  \\ \par\medskip
    103103            \tiny{\textbf{Maronga, B., Gryschka, M., Heinze, R., Hoffmann, F., Kanani-SÃŒhring, F., Keck, M., Ketelsen, K., Letzel, M. O., SÃŒhring, M., and Raasch, S., 2015}: The Parallelized Large-Eddy Simulation Model (PALM)
    104             version 4.0 for atmospheric and oceanic flows: model formulation, recent developments, and future perspectives, Geosci. Model Dev., 8, 2515-2551, doi:10.5194/gmd-8-2515-2015.
    105       \item<3->{... about application for urban flows: \\ \par\medskip
     104            version 4.0 for atmospheric and oceanic flows: model formulation, recent developments, and future perspectives, Geosci. Model Dev., 8, 2515-2551, doi:10.5194/gmd-8-2515-2015.}}
     105      \item<2->{... about application for urban flows: \\ \par\medskip
    106106            \tiny{\textbf{Letzel, M.O., M. Krane and S. Raasch, 2008}: High resolution urban large-eddy simulation studies
    107             from street canyon to neighbourhood scale, Atmos. Env., 42, 8770-8784, doi:10.1016/j.atmosenv.2008.08.001.
    108       \item<4->{... about non-cyclic boundary conditions: \\ \par\medskip
     107            from street canyon to neighbourhood scale, Atmos. Env., 42, 8770-8784, doi:10.1016/j.atmosenv.2008.08.001.}}
     108      \item<3->{... about non-cyclic boundary conditions: \\ \par\medskip
    109109            \tiny{\textbf{Gryschka, M. and S. Raasch, 2005}: Roll Convection During a Cold Air Outbreak: A Large Eddy Simulation with Stationary Model Domain.
    110             Geophys. Res. Lett., 32, L14805, doi:10.1029/2005GL022872. \\ \par\medskip
     110            Geophys. Res. Lett., 32, L14805, doi:10.1029/2005GL022872. \\ \par\medskip 
    111111            \textbf{Gryschka, M., C. DrÃŒe, D. Etling and S. Raasch. 2008}: On the influence of sea-ice inhomogeneities onto roll convection in
    112             cold-air outbreaks, Geophys. Res. Lett., 35, L23804, doi:10.1029/2008GL035845.
    113       \item<5->{... about the Lagrangian particle model: \\ \par\medskip
     112            cold-air outbreaks, Geophys. Res. Lett., 35, L23804, doi:10.1029/2008GL035845.}}
     113   \end{itemize}
     114\end{frame}
     115
     116% Folie 4b
     117\begin{frame}
     118   \frametitle{More PALM Information ...}
     119   \footnotesize
     120   \vspace{-2mm}
     121   \begin{itemize}
     122      \item<1->{... about the Lagrangian particle model: \\ \par\medskip
    114123            \tiny{\textbf{Steinfeld, G., S. Raasch and T. Markkanen, 2008}: Footprints in homogeneously and heterogeneously driven boundary layers derived
    115124            from a Lagrangian stochastic particle model embedded into large-eddy simulation, Boundary-Layer Meteorol., 129, 225-248.\\ \par\medskip
    116             \textbf{Riechelmann, T., Y. Noh and S. Raasch, 2012}: A new method for large-eddy simulations of clouds with Lagrangian droplets including the effects of turbulent collision., New J. Phys., 14, 065008.
    117       \item<6->{... on our webpage: \\
     125            \textbf{Riechelmann, T., Y. Noh and S. Raasch, 2012}: A new method for large-eddy simulations of clouds with Lagrangian droplets including the effects of turbulent collision., New J. Phys., 14, 065008.}}
     126      \item<2->{... on our webpage: \\
    118127            \tiny{\textbf{http://palm.muk.uni-hannover.de}}}
    119       \item<7->{Current model status (PALM 4.0) will be published soon \\in \textit{Geoscientific Model Development}}
    120128   \end{itemize}
    121129\end{frame}
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