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Changeset 127 for palm


Ignore:
Timestamp:
Oct 23, 2007 11:05:25 AM (17 years ago)
Author:
letzel
Message:

Further modifications of mrun for lctit.

Updates to documentation:
data_output_pr, netcdf_64bit, netcdf_64bit_3d.

Creation of new subdirectory /trunk/DOC/misc for example
for local support information, contains Tsubame.html.

Creation of new subdirectory /trunk/SCRIPTS/NCL with a first set of
sample NCL scripts.

Location:
palm/trunk
Files:
8 added
3 edited

Legend:

Unmodified
Added
Removed

  • palm/trunk/DOC/app/chapter_4.2.html

    r116 r127  
    1212 
    1313  <title>PALM chapter 4.2</title></head>
    14 
    1514<body>
    1615
    … …  
    23442343     
    23452344      <p>Profiles can also be temporally
    2346 averaged (see <a href="chapter_4.2.html#averaging_interval_pr">averaging_interval_pr</a>).&nbsp;<br>
     2345averaged (see <a href="chapter_4.2.html#averaging_interval_pr">averaging_interval_pr</a>).<br>
    23472346
    23482347
    … …  
    23672366level is z = zu(1) instead of z = zw(0) for profiles <i>w''
    23682367u'',w''v"</i>, <i>wu</i> and <i>wv</i>
    2369 .&nbsp; <br>
     2368. Turbulence quantities such as&nbsp;<span style="font-style: italic;">w*u* &nbsp;</span>or <span style="font-style: italic;">u*2</span> are calculated from turbulent fluctuations that are defined as deviations from the instantaneous horizontal average.
    23702369
    23712370
    … …  
    28052804
    28062805
    2807  <td style="vertical-align: top;"><font color="#33ff33"><i>w*pt*</i></font></td>
     2806 <td style="vertical-align: top;"><font color="#33ff33"><i>w*vpt*</i></font></td>
    28082807
    28092808
    … …  
    30503049
    30513050
    3052             <td style="vertical-align: top;">Variance of the potential
    3053 temperature (resolved)</td>
     3051            <td style="vertical-align: top;">Variance of the w-velocity
     3052component (resolved)</td>
    30543053
    30553054
    … …  
    56715670
    56725671
    5673       <td style="vertical-align: top;">NetCDF files will have 64
    5674 bit offset format.<br>
     5672      <td style="vertical-align: top;">All NetCDF files - except those containing 3d
     5673volume data - will have 64
     5674bit offset format if&nbsp;<span style="font-weight: bold;">netcdf_64bit</span>
     5675= .TRUE..<br>
    56755676
    56765677
    … …  
    56805681By
    56815682default, the maximum file size of the NetCDF files opened by PALM is 2
    5682 GByte. Using netcdf_64bit = .TRUE. allows file sizes larger than 2
     5683GByte. Using <span style="font-weight: bold;">netcdf_64bit</span> = .TRUE. allows file sizes larger than 2
    56835684GByte.<br>
    56845685
    … …  
    56875688
    56885689
    5689 The 64 bit offset format can be separately
    5690 switched off for those NetCDF files containing 3d volume date (<span style="font-family: Courier New,Courier,monospace;">DATA_3D_NETCDF</span>,
     5690The 64 bit offset format for those NetCDF files containing 3d volume data (<span style="font-family: Courier New,Courier,monospace;">DATA_3D_NETCDF</span>,
    56915691      <span style="font-family: Courier New,Courier,monospace;">DATA_3D_AV_NETCDF</span>)
    5692 using <a href="#netcdf_64bit_3d">netcdf_64bit_3d</a>.<br>
     5692is controlled independently by the switch <a href="#netcdf_64bit_3d">netcdf_64bit_3d</a>.<br>
    56935693
    56945694
    … …  
    57235723
    57245724      <td style="vertical-align: top;">NetCDF files containing 3d
    5725 volume data will have 64 bit offset format.<br>
    5726 
    5727 
    5728       <br>
    5729 
    5730 
    5731 This
    5732 switch&nbsp;only comes into effect if <a href="#netcdf_64bit">netcdf_64bit</a>
    5733 = .TRUE.. It allows to switch off separately the 64 bit offset format
    5734 for those NetCDF files containing 3d volume data (<span style="font-family: Courier New,Courier,monospace;">DATA_3D_NETCDF</span>,
    5735       <span style="font-family: Courier New,Courier,monospace;">DATA_3D_AV_NETCDF</span>).</td>
     5725volume data will have 64 bit offset format if&nbsp;<span style="font-weight: bold;">netcdf_64bit_3d</span>
     5726= .TRUE..<br><br>
     5727
     5728
     5729By
     5730default, the maximum file size of the NetCDF files opened by PALM is 2
     5731GByte. Using <span style="font-weight: bold;">netcdf_64bit_3d</span> = .TRUE. allows file sizes larger than 2
     5732GByte.<br><br>
     5733
     5734
     5735The 64 bit offset format for all other NetCDF files (<span style="font-style: italic;">not</span> containing 3d volume data) is controlled independently by the switch <a href="chapter_4.2.html#netcdf_64bit">netcdf_64bit</a>.<br><br>
     5736
     5737
     5738      <span style="font-weight: bold;">Warning:</span><br>
     5739
     5740
     5741Some
     5742(PD or commercial) software may not support the 64 bit offset format.</td>
    57365743
    57375744

  • palm/trunk/DOC/app/chapter_4.6.html

    r116 r127  
    5050-->
    5151  </style></head>
    52 
    5352<body style="direction: ltr;" lang="en-US">
    5453
    … …  
    57455744
    57465745
    5747  <td>NetCDF
    5748 files will have 64 bit offset format.</td>
     5746 <td>All NetCDF files - except those containing 3d
     5747volume data - will have 64 bit offset format.</td>
    57495748
    57505749

  • palm/trunk/SCRIPTS/mrun

    r126 r127  
    263263    # EXPORTIERT WERDEN
    264264 export  afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
    265  export  input_list memory numprocs output_list queue run_mode
     265 export  group_number input_list memory numprocs output_list queue run_mode
    266266
    267267
    … …  
    826826       # IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
    827827    mrun_memory=$memory
     828    mrun_group_number=$group_number
    828829    mrun_cpumax=$cpumax
    829830    mrun_numprocs=$numprocs
    … …  
    847848       # OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
    848849    [[ $mrun_memory     != 0  ]]  &&  memory=$mrun_memory
     850    [[ "$mrun_group_number" != "none" ]]  &&  group_number=$mrun_group_number
    849851    [[ $mrun_cpumax     != 0  ]]  &&  cpumax=$mrun_cpumax
    850852    [[ "$mrun_numprocs" != "" ]]  &&  numprocs=$mrun_numprocs
    … …  
    27982800                mpirun  -np $numprocs  a.out  $ROPTS
    27992801             else
    2800                  (( mem_tsubame = 31.0 / $tasks_per_node ))
    2801                  echo "Memory for Tsubame in GB:", $mem_tsubame
     2802                 (( mem_tsubame = $memory / 1024.0 ))
     2803                 echo "Memory for Tsubame for each process in GB:", $mem_tsubame
    28022804#                n1ge  -fore  -g 1S060156  -mpi $numprocs  -mem 4  -N palm  -q $queue  a.out  $ROPTS
    28032805               /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue  a.out  $ROPTS
    … …  
    35883590    [[ $return_password != "" ]]  &&  mrun_com=${mrun_com}" -P $return_password"
    35893591    [[ $delete_temporary_catalog = false ]]  &&  mrun_com=${mrun_com}" -B"
    3590     [[ $node_usage != default  &&  $node_usage != sla3 ]]  &&  mrun_com=${mrun_com}" -n $node_usage"
     3592    [[ $node_usage != default  &&  "$(echo $node_usage | cut -c1-3)" != "sla"  &&  $node_usage != novice ]]  &&  mrun_com=${mrun_com}" -n $node_usage"
    35913593    [[ $run_coupled_model = true ]]  &&  mrun_com=${mrun_com}" -Y"
    35923594    if [[ $do_remote = true ]]
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