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Last change on this file since 3628 was 3589, checked in by suehring, 6 years ago
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1	!> @file data_output_3d.f90
2	!------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the
6	! terms of the GNU General Public License as published by the Free Software
7	! Foundation, either version 3 of the License, or (at your option) any later
8	! version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2018 Leibniz Universitaet Hannover
18	!------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! ------------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: data_output_3d.f90 3589 2018-11-30 15:09:51Z knoop $
27	! Move the control parameter "salsa" from salsa_mod to control_parameters
28	! (M. Kurppa)
29	!
30	! 3582 2018-11-29 19:16:36Z suehring
31	! add variable description; rename variable 'if' into 'ivar'
32	!
33	! 3525 2018-11-14 16:06:14Z kanani
34	! Changes related to clean-up of biometeorology (dom_dwd_user)
35	!
36	! 3467 2018-10-30 19:05:21Z suehring
37	! Implementation of a new aerosol module salsa.
38	!
39	! 3448 2018-10-29 18:14:31Z kanani
40	! Adjustment of biometeorology calls
41	!
42	! 3421 2018-10-24 18:39:32Z gronemeier
43	! Renamed output variables
44	!
45	! 3419 2018-10-24 17:27:31Z gronemeier
46	! bugfix: nx, ny are required in non-parallel case
47	!
48	! 3337 2018-10-12 15:17:09Z kanani
49	! (from branch resler)
50	! Add Biometeorology
51	!
52	! 3294 2018-10-01 02:37:10Z raasch
53	! changes concerning modularization of ocean option
54	!
55	! 3274 2018-09-24 15:42:55Z knoop
56	! Modularization of all bulk cloud physics code components
57	!
58	! 3241 2018-09-12 15:02:00Z raasch
59	! unused variables and format statements removed
60	!
61	! 3049 2018-05-29 13:52:36Z Giersch
62	! Error messages revised
63	!
64	! 3045 2018-05-28 07:55:41Z Giersch
65	! Error message revised
66	!
67	! 3014 2018-05-09 08:42:38Z maronga
68	! Added nzb_do and nzt_do for some modules for 3d output
69	!
70	! 3004 2018-04-27 12:33:25Z Giersch
71	! Allocation checks implemented (averaged data will be assigned to fill values
72	! if no allocation happened so far)
73	!
74	! 2967 2018-04-13 11:22:08Z raasch
75	! bugfix: missing parallel cpp-directives added
76	!
77	! 2817 2018-02-19 16:32:21Z knoop
78	! Preliminary gust module interface implemented
79	!
80	! 2766 2018-01-22 17:17:47Z kanani
81	! Removed preprocessor directive __chem
82	!
83	! 2756 2018-01-16 18:11:14Z suehring
84	! Fill values for 3D output of chemical species introduced.
85	!
86	! 2746 2018-01-15 12:06:04Z suehring
87	! Move flag plant canopy to modules
88	!
89	! 2718 2018-01-02 08:49:38Z maronga
90	! Corrected "Former revisions" section
91	!
92	! 2696 2017-12-14 17:12:51Z kanani
93	! Change in file header (GPL part)
94	! Implementation of turbulence_closure_mod (TG)
95	! Implementation of chemistry module (FK)
96	! Set fill values at topography grid points or e.g. non-natural-type surface
97	! in case of LSM output (MS)
98	!
99	! 2512 2017-10-04 08:26:59Z raasch
100	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
101	! no output of ghost layer data
102	!
103	! 2292 2017-06-20 09:51:42Z schwenkel
104	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
105	! includes two more prognostic equations for cloud drop concentration (nc)
106	! and cloud water content (qc).
107	!
108	! 2233 2017-05-30 18:08:54Z suehring
109	!
110	! 2232 2017-05-30 17:47:52Z suehring
111	! Adjustments to new topography concept
112	!
113	! 2209 2017-04-19 09:34:46Z kanani
114	! Added plant canopy model output
115	!
116	! 2031 2016-10-21 15:11:58Z knoop
117	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
118	!
119	! 2011 2016-09-19 17:29:57Z kanani
120	! Flag urban_surface is now defined in module control_parameters,
121	! changed prefix for urban surface model output to "usm_",
122	! introduced control parameter varnamelength for LEN of trimvar.
123	!
124	! 2007 2016-08-24 15:47:17Z kanani
125	! Added support for new urban surface model (temporary modifications of
126	! SELECT CASE ( ) necessary, see variable trimvar)
127	!
128	! 2000 2016-08-20 18:09:15Z knoop
129	! Forced header and separation lines into 80 columns
130	!
131	! 1980 2016-07-29 15:51:57Z suehring
132	! Bugfix, in order to steer user-defined output, setting flag found explicitly
133	! to .F.
134	!
135	! 1976 2016-07-27 13:28:04Z maronga
136	! Output of radiation quantities is now done directly in the respective module
137	!
138	! 1972 2016-07-26 07:52:02Z maronga
139	! Output of land surface quantities is now done directly in the respective module.
140	! Unnecessary directive __parallel removed.
141	!
142	! 1960 2016-07-12 16:34:24Z suehring
143	! Scalar surface flux added
144	!
145	! 1849 2016-04-08 11:33:18Z hoffmann
146	! prr moved to arrays_3d
147	!
148	! 1822 2016-04-07 07:49:42Z hoffmann
149	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
150	!
151	! 1808 2016-04-05 19:44:00Z raasch
152	! test output removed
153	!
154	! 1783 2016-03-06 18:36:17Z raasch
155	! name change of netcdf routines and module + related changes
156	!
157	! 1745 2016-02-05 13:06:51Z gronemeier
158	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
159	!
160	! 1691 2015-10-26 16:17:44Z maronga
161	! Added output of radiative heating rates for RRTMG
162	!
163	! 1682 2015-10-07 23:56:08Z knoop
164	! Code annotations made doxygen readable
165	!
166	! 1585 2015-04-30 07:05:52Z maronga
167	! Added support for RRTMG
168	!
169	! 1551 2015-03-03 14:18:16Z maronga
170	! Added suppport for land surface model and radiation model output. In the course
171	! of this action, the limits for vertical loops have been changed (from nzb and
172	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
173	! Moreover, a new vertical grid zs was introduced.
174	!
175	! 1359 2014-04-11 17:15:14Z hoffmann
176	! New particle structure integrated.
177	!
178	! 1353 2014-04-08 15:21:23Z heinze
179	! REAL constants provided with KIND-attribute
180	!
181	! 1327 2014-03-21 11:00:16Z raasch
182	! parts concerning avs output removed,
183	! -netcdf output queries
184	!
185	! 1320 2014-03-20 08:40:49Z raasch
186	! ONLY-attribute added to USE-statements,
187	! kind-parameters added to all INTEGER and REAL declaration statements,
188	! kinds are defined in new module kinds,
189	! old module precision_kind is removed,
190	! revision history before 2012 removed,
191	! comment fields (!:) to be used for variable explanations added to
192	! all variable declaration statements
193	!
194	! 1318 2014-03-17 13:35:16Z raasch
195	! barrier argument removed from cpu_log,
196	! module interfaces removed
197	!
198	! 1308 2014-03-13 14:58:42Z fricke
199	! Check, if the limit of the time dimension is exceeded for parallel output
200	! To increase the performance for parallel output, the following is done:
201	! - Update of time axis is only done by PE0
202	!
203	! 1244 2013-10-31 08:16:56Z raasch
204	! Bugfix for index bounds in case of 3d-parallel output
205	!
206	! 1115 2013-03-26 18:16:16Z hoffmann
207	! ql is calculated by calc_liquid_water_content
208	!
209	! 1106 2013-03-04 05:31:38Z raasch
210	! array_kind renamed precision_kind
211	!
212	! 1076 2012-12-05 08:30:18Z hoffmann
213	! Bugfix in output of ql
214	!
215	! 1053 2012-11-13 17:11:03Z hoffmann
216	! +nr, qr, prr, qc and averaged quantities
217	!
218	! 1036 2012-10-22 13:43:42Z raasch
219	! code put under GPL (PALM 3.9)
220	!
221	! 1031 2012-10-19 14:35:30Z raasch
222	! netCDF4 without parallel file support implemented
223	!
224	! 1007 2012-09-19 14:30:36Z franke
225	! Bugfix: missing calculation of ql_vp added
226	!
227	! Revision 1.1 1997/09/03 06:29:36 raasch
228	! Initial revision
229	!
230	!
231	! Description:
232	! ------------
233	!> Output of the 3D-arrays in netCDF and/or AVS format.
234	!------------------------------------------------------------------------------!
235	SUBROUTINE data_output_3d( av )
236
237
238	USE arrays_3d, &
239	ONLY: d_exner, e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, s, &
240	tend, u, v, vpt, w
241
242	USE averaging
243
244	USE basic_constants_and_equations_mod, &
245	ONLY: lv_d_cp
246
247	USE biometeorology_mod, &
248	ONLY: bio_data_output_3d
249
250	USE bulk_cloud_model_mod, &
251	ONLY: bulk_cloud_model, bcm_data_output_3d
252
253	USE chemistry_model_mod, &
254	ONLY: chem_data_output_3d
255
256	USE control_parameters, &
257	ONLY: air_chemistry, biometeorology, do3d, do3d_no, do3d_time_count, &
258	io_blocks, io_group, land_surface, message_string, &
259	ntdim_3d, nz_do3d, ocean_mode, plant_canopy, &
260	psolver, salsa, simulated_time, time_since_reference_point, &
261	urban_surface, varnamelength
262
263	USE cpulog, &
264	ONLY: log_point, cpu_log
265
266	USE gust_mod, &
267	ONLY: gust_data_output_3d, gust_module_enabled
268
269	#if defined( __parallel )
270	USE indices, &
271	ONLY: nbgp, nxl, nxlg, nxr, nxrg, nyn, nyng, nys, nysg, nzb, nzt, &
272	wall_flags_0
273	#else
274	USE indices, &
275	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
276	nzt, wall_flags_0
277	#endif
278
279	USE kinds
280
281	USE land_surface_model_mod, &
282	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
283
284	#if defined( __netcdf )
285	USE NETCDF
286	#endif
287
288	USE netcdf_interface, &
289	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
290	netcdf_data_format, netcdf_handle_error
291
292	USE ocean_mod, &
293	ONLY: ocean_data_output_3d
294
295	USE particle_attributes, &
296	ONLY: grid_particles, number_of_particles, particles, &
297	particle_advection_start, prt_count
298
299	USE pegrid
300
301	USE plant_canopy_model_mod, &
302	ONLY: pcm_data_output_3d
303
304	USE radiation_model_mod, &
305	ONLY: nzub, nzut, radiation, radiation_data_output_3d
306
307	USE salsa_mod, &
308	ONLY: salsa_data_output_3d
309
310	USE turbulence_closure_mod, &
311	ONLY: tcm_data_output_3d
312
313	USE urban_surface_mod, &
314	ONLY: usm_data_output_3d
315
316
317	IMPLICIT NONE
318
319	INTEGER(iwp) :: av !< flag for (non-)average output
320	INTEGER(iwp) :: flag_nr !< number of masking flag
321	INTEGER(iwp) :: i !< loop index
322	INTEGER(iwp) :: ivar !< variable index
323	INTEGER(iwp) :: j !< loop index
324	INTEGER(iwp) :: k !< loop index
325	INTEGER(iwp) :: n !< loop index
326	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
327	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
328
329	LOGICAL :: found !< true if output variable was found
330	LOGICAL :: resorted !< true if variable is resorted
331
332	REAL(wp) :: mean_r !< mean particle radius
333	REAL(wp) :: s_r2 !< sum( particle-radius**2 )
334	REAL(wp) :: s_r3 !< sum( particle-radius**3 )
335
336	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !< output array
337
338	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !< pointer to array which shall be output
339
340	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
341
342	!
343	!-- Return, if nothing to output
344	IF ( do3d_no(av) == 0 ) RETURN
345
346	CALL cpu_log (log_point(14),'data_output_3d','start')
347
348	!
349	!-- Open output file.
350	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
351	!-- own file and writes the data of its subdomain in binary format. After the
352	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
353	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
354	IF ( netcdf_data_format < 5 ) THEN
355	#if defined( __parallel )
356	CALL check_open( 30 )
357	#endif
358	IF ( myid == 0 ) CALL check_open( 106+av*10 )
359	ELSE
360	CALL check_open( 106+av*10 )
361	ENDIF
362
363	!
364	!-- For parallel netcdf output the time axis must be limited. Return, if this
365	!-- limit is exceeded. This could be the case, if the simulated time exceeds
366	!-- the given end time by the length of the given output interval.
367	IF ( netcdf_data_format > 4 ) THEN
368	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
369	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
370	simulated_time, '&because the maximum ', &
371	'number of output time levels is ', &
372	'exceeded.'
373	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
374	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
375	RETURN
376	ENDIF
377	ENDIF
378
379	!
380	!-- Update the netCDF time axis
381	!-- In case of parallel output, this is only done by PE0 to increase the
382	!-- performance.
383	#if defined( __netcdf )
384	do3d_time_count(av) = do3d_time_count(av) + 1
385	IF ( myid == 0 ) THEN
386	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
387	(/ time_since_reference_point /), &
388	start = (/ do3d_time_count(av) /), &
389	count = (/ 1 /) )
390	CALL netcdf_handle_error( 'data_output_3d', 376 )
391	ENDIF
392	#endif
393
394	!
395	!-- Loop over all variables to be written.
396	ivar = 1
397
398	DO WHILE ( do3d(av,ivar)(1:1) /= ' ' )
399
400	!
401	!-- Temporary solution to account for data output within the new urban
402	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
403	!-- Store the array chosen on the temporary array.
404	trimvar = TRIM( do3d(av,ivar) )
405	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
406	trimvar = 'usm_output'
407	resorted = .TRUE.
408	nzb_do = nzub
409	nzt_do = nzut
410	ELSE
411	resorted = .FALSE.
412	nzb_do = nzb
413	nzt_do = nz_do3d
414	ENDIF
415	!
416	!-- Set flag to steer output of radiation, land-surface, or user-defined
417	!-- quantities
418	found = .FALSE.
419	!
420	!-- Allocate a temporary array with the desired output dimensions.
421	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
422	!
423	!-- Before each output, set array local_pf to fill value
424	local_pf = fill_value
425	!
426	!-- Set masking flag for topography for not resorted arrays
427	flag_nr = 0
428
429	SELECT CASE ( trimvar )
430
431	CASE ( 'e' )
432	IF ( av == 0 ) THEN
433	to_be_resorted => e
434	ELSE
435	IF ( .NOT. ALLOCATED( e_av ) ) THEN
436	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
437	e_av = REAL( fill_value, KIND = wp )
438	ENDIF
439	to_be_resorted => e_av
440	ENDIF
441
442	CASE ( 'thetal' )
443	IF ( av == 0 ) THEN
444	to_be_resorted => pt
445	ELSE
446	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
447	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
448	lpt_av = REAL( fill_value, KIND = wp )
449	ENDIF
450	to_be_resorted => lpt_av
451	ENDIF
452
453	CASE ( 'p' )
454	IF ( av == 0 ) THEN
455	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
456	to_be_resorted => p
457	ELSE
458	IF ( .NOT. ALLOCATED( p_av ) ) THEN
459	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
460	p_av = REAL( fill_value, KIND = wp )
461	ENDIF
462	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
463	to_be_resorted => p_av
464	ENDIF
465
466	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
467	IF ( av == 0 ) THEN
468	IF ( simulated_time >= particle_advection_start ) THEN
469	tend = prt_count
470	ELSE
471	tend = 0.0_wp
472	ENDIF
473	DO i = nxl, nxr
474	DO j = nys, nyn
475	DO k = nzb_do, nzt_do
476	local_pf(i,j,k) = tend(k,j,i)
477	ENDDO
478	ENDDO
479	ENDDO
480	resorted = .TRUE.
481	ELSE
482	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
483	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
484	pc_av = REAL( fill_value, KIND = wp )
485	ENDIF
486	to_be_resorted => pc_av
487	ENDIF
488
489	CASE ( 'pr' ) ! mean particle radius (effective radius)
490	IF ( av == 0 ) THEN
491	IF ( simulated_time >= particle_advection_start ) THEN
492	DO i = nxl, nxr
493	DO j = nys, nyn
494	DO k = nzb_do, nzt_do
495	number_of_particles = prt_count(k,j,i)
496	IF (number_of_particles <= 0) CYCLE
497	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
498	s_r2 = 0.0_wp
499	s_r3 = 0.0_wp
500	DO n = 1, number_of_particles
501	IF ( particles(n)%particle_mask ) THEN
502	s_r2 = s_r2 + particles(n)%radius*2 &
503	particles(n)%weight_factor
504	s_r3 = s_r3 + particles(n)%radius*3 &
505	particles(n)%weight_factor
506	ENDIF
507	ENDDO
508	IF ( s_r2 > 0.0_wp ) THEN
509	mean_r = s_r3 / s_r2
510	ELSE
511	mean_r = 0.0_wp
512	ENDIF
513	tend(k,j,i) = mean_r
514	ENDDO
515	ENDDO
516	ENDDO
517	ELSE
518	tend = 0.0_wp
519	ENDIF
520	DO i = nxl, nxr
521	DO j = nys, nyn
522	DO k = nzb_do, nzt_do
523	local_pf(i,j,k) = tend(k,j,i)
524	ENDDO
525	ENDDO
526	ENDDO
527	resorted = .TRUE.
528	ELSE
529	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
530	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
531	pr_av = REAL( fill_value, KIND = wp )
532	ENDIF
533	to_be_resorted => pr_av
534	ENDIF
535
536	CASE ( 'theta' )
537	IF ( av == 0 ) THEN
538	IF ( .NOT. bulk_cloud_model ) THEN
539	to_be_resorted => pt
540	ELSE
541	DO i = nxl, nxr
542	DO j = nys, nyn
543	DO k = nzb_do, nzt_do
544	local_pf(i,j,k) = pt(k,j,i) + lv_d_cp * &
545	d_exner(k) * &
546	ql(k,j,i)
547	ENDDO
548	ENDDO
549	ENDDO
550	resorted = .TRUE.
551	ENDIF
552	ELSE
553	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
554	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
555	pt_av = REAL( fill_value, KIND = wp )
556	ENDIF
557	to_be_resorted => pt_av
558	ENDIF
559
560	CASE ( 'q' )
561	IF ( av == 0 ) THEN
562	to_be_resorted => q
563	ELSE
564	IF ( .NOT. ALLOCATED( q_av ) ) THEN
565	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
566	q_av = REAL( fill_value, KIND = wp )
567	ENDIF
568	to_be_resorted => q_av
569	ENDIF
570
571	CASE ( 'ql' )
572	IF ( av == 0 ) THEN
573	to_be_resorted => ql
574	ELSE
575	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
576	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
577	ql_av = REAL( fill_value, KIND = wp )
578	ENDIF
579	to_be_resorted => ql_av
580	ENDIF
581
582	CASE ( 'ql_c' )
583	IF ( av == 0 ) THEN
584	to_be_resorted => ql_c
585	ELSE
586	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
587	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
588	ql_c_av = REAL( fill_value, KIND = wp )
589	ENDIF
590	to_be_resorted => ql_c_av
591	ENDIF
592
593	CASE ( 'ql_v' )
594	IF ( av == 0 ) THEN
595	to_be_resorted => ql_v
596	ELSE
597	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
598	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
599	ql_v_av = REAL( fill_value, KIND = wp )
600	ENDIF
601	to_be_resorted => ql_v_av
602	ENDIF
603
604	CASE ( 'ql_vp' )
605	IF ( av == 0 ) THEN
606	IF ( simulated_time >= particle_advection_start ) THEN
607	DO i = nxl, nxr
608	DO j = nys, nyn
609	DO k = nzb_do, nzt_do
610	number_of_particles = prt_count(k,j,i)
611	IF (number_of_particles <= 0) CYCLE
612	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
613	DO n = 1, number_of_particles
614	IF ( particles(n)%particle_mask ) THEN
615	tend(k,j,i) = tend(k,j,i) + &
616	particles(n)%weight_factor / &
617	prt_count(k,j,i)
618	ENDIF
619	ENDDO
620	ENDDO
621	ENDDO
622	ENDDO
623	ELSE
624	tend = 0.0_wp
625	ENDIF
626	DO i = nxl, nxr
627	DO j = nys, nyn
628	DO k = nzb_do, nzt_do
629	local_pf(i,j,k) = tend(k,j,i)
630	ENDDO
631	ENDDO
632	ENDDO
633	resorted = .TRUE.
634	ELSE
635	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
636	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
637	ql_vp_av = REAL( fill_value, KIND = wp )
638	ENDIF
639	to_be_resorted => ql_vp_av
640	ENDIF
641
642	CASE ( 'qv' )
643	IF ( av == 0 ) THEN
644	DO i = nxl, nxr
645	DO j = nys, nyn
646	DO k = nzb_do, nzt_do
647	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
648	ENDDO
649	ENDDO
650	ENDDO
651	resorted = .TRUE.
652	ELSE
653	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
654	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
655	qv_av = REAL( fill_value, KIND = wp )
656	ENDIF
657	to_be_resorted => qv_av
658	ENDIF
659
660	CASE ( 's' )
661	IF ( av == 0 ) THEN
662	to_be_resorted => s
663	ELSE
664	IF ( .NOT. ALLOCATED( s_av ) ) THEN
665	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
666	s_av = REAL( fill_value, KIND = wp )
667	ENDIF
668	to_be_resorted => s_av
669	ENDIF
670
671	CASE ( 'u' )
672	flag_nr = 1
673	IF ( av == 0 ) THEN
674	to_be_resorted => u
675	ELSE
676	IF ( .NOT. ALLOCATED( u_av ) ) THEN
677	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
678	u_av = REAL( fill_value, KIND = wp )
679	ENDIF
680	to_be_resorted => u_av
681	ENDIF
682
683	CASE ( 'v' )
684	flag_nr = 2
685	IF ( av == 0 ) THEN
686	to_be_resorted => v
687	ELSE
688	IF ( .NOT. ALLOCATED( v_av ) ) THEN
689	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
690	v_av = REAL( fill_value, KIND = wp )
691	ENDIF
692	to_be_resorted => v_av
693	ENDIF
694
695	CASE ( 'thetav' )
696	IF ( av == 0 ) THEN
697	to_be_resorted => vpt
698	ELSE
699	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
700	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
701	vpt_av = REAL( fill_value, KIND = wp )
702	ENDIF
703	to_be_resorted => vpt_av
704	ENDIF
705
706	CASE ( 'w' )
707	flag_nr = 3
708	IF ( av == 0 ) THEN
709	to_be_resorted => w
710	ELSE
711	IF ( .NOT. ALLOCATED( w_av ) ) THEN
712	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
713	w_av = REAL( fill_value, KIND = wp )
714	ENDIF
715	to_be_resorted => w_av
716	ENDIF
717	!
718	!-- Block of urban surface model outputs
719	CASE ( 'usm_output' )
720	CALL usm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
721	nzb_do, nzt_do )
722
723	CASE DEFAULT
724
725	!
726	!-- Quantities of other modules
727	IF ( .NOT. found .AND. bulk_cloud_model ) THEN
728	CALL bcm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
729	nzb_do, nzt_do )
730	resorted = .TRUE.
731	ENDIF
732
733	IF ( .NOT. found .AND. air_chemistry ) THEN
734	CALL chem_data_output_3d( av, do3d(av,ivar), found, &
735	local_pf, fill_value, nzb_do, nzt_do )
736	resorted = .TRUE.
737	ENDIF
738
739	IF ( .NOT. found .AND. gust_module_enabled ) THEN
740	CALL gust_data_output_3d( av, do3d(av,ivar), found, local_pf, &
741	nzb_do, nzt_do )
742	resorted = .TRUE.
743	ENDIF
744
745	IF ( .NOT. found .AND. land_surface ) THEN
746	!
747	!-- For soil model quantities, it is required to re-allocate local_pf
748	nzb_do = nzb_soil
749	nzt_do = nzt_soil
750
751	DEALLOCATE ( local_pf )
752	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
753	local_pf = fill_value
754
755	CALL lsm_data_output_3d( av, do3d(av,ivar), found, local_pf )
756	resorted = .TRUE.
757
758	!
759	!-- If no soil model variable was found, re-allocate local_pf
760	IF ( .NOT. found ) THEN
761	nzb_do = nzb
762	nzt_do = nz_do3d
763
764	DEALLOCATE ( local_pf )
765	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
766	ENDIF
767
768	ENDIF
769
770	IF ( .NOT. found .AND. ocean_mode ) THEN
771	CALL ocean_data_output_3d( av, do3d(av,ivar), found, local_pf, &
772	nzb_do, nzt_do )
773	resorted = .TRUE.
774	ENDIF
775
776	IF ( .NOT. found .AND. plant_canopy ) THEN
777	CALL pcm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
778	fill_value, nzb_do, nzt_do )
779	resorted = .TRUE.
780	ENDIF
781
782	IF ( .NOT. found .AND. radiation ) THEN
783	CALL radiation_data_output_3d( av, do3d(av,ivar), found, &
784	local_pf, nzb_do, nzt_do )
785	resorted = .TRUE.
786	ENDIF
787
788	IF ( .NOT. found ) THEN
789	CALL tcm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
790	nzb_do, nzt_do )
791	resorted = .TRUE.
792	ENDIF
793
794	!
795	!-- SALSA output
796	IF ( .NOT. found .AND. salsa ) THEN
797	CALL salsa_data_output_3d( av, do3d(av,ivar), found, local_pf, &
798	nzb_do, nzt_do )
799	resorted = .TRUE.
800	ENDIF
801
802	IF ( .NOT. found .AND. biometeorology ) THEN
803	CALL bio_data_output_3d( av, do3d(av,ivar), found, local_pf, &
804	nzb_do, nzt_do )
805	ENDIF
806
807	!
808	!-- User defined quantities
809	IF ( .NOT. found ) THEN
810	CALL user_data_output_3d( av, do3d(av,ivar), found, local_pf, &
811	nzb_do, nzt_do )
812	resorted = .TRUE.
813	ENDIF
814
815	IF ( .NOT. found ) THEN
816	message_string = 'no output available for: ' // &
817	TRIM( do3d(av,ivar) )
818	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
819	ENDIF
820
821	END SELECT
822
823	!
824	!-- Resort the array to be output, if not done above
825	IF ( .NOT. resorted ) THEN
826	DO i = nxl, nxr
827	DO j = nys, nyn
828	DO k = nzb_do, nzt_do
829	local_pf(i,j,k) = MERGE( &
830	to_be_resorted(k,j,i), &
831	REAL( fill_value, KIND = wp ), &
832	BTEST( wall_flags_0(k,j,i), flag_nr ) )
833	ENDDO
834	ENDDO
835	ENDDO
836	ENDIF
837
838	!
839	!-- Output of the 3D-array
840	#if defined( __parallel )
841	IF ( netcdf_data_format < 5 ) THEN
842	!
843	!-- Non-parallel netCDF output. Data is output in parallel in
844	!-- FORTRAN binary format here, and later collected into one file by
845	!-- combine_plot_fields
846	IF ( myid == 0 ) THEN
847	WRITE ( 30 ) time_since_reference_point, &
848	do3d_time_count(av), av
849	ENDIF
850	DO i = 0, io_blocks-1
851	IF ( i == io_group ) THEN
852	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
853	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
854	ENDIF
855
856	CALL MPI_BARRIER( comm2d, ierr )
857
858	ENDDO
859
860	ELSE
861	#if defined( __netcdf )
862	!
863	!-- Parallel output in netCDF4/HDF5 format.
864	! IF ( nxr == nx .AND. nyn /= ny ) THEN
865	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
866	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
867	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
868	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
869	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
870	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
871	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
872	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
873	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
874	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
875	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
876	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
877	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
878	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
879	! ELSE
880	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
881	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
882	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
883	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
884	! ENDIF
885	CALL netcdf_handle_error( 'data_output_3d', 386 )
886	#endif
887	ENDIF
888	#else
889	#if defined( __netcdf )
890	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
891	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
892	start = (/ 1, 1, 1, do3d_time_count(av) /), &
893	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
894	CALL netcdf_handle_error( 'data_output_3d', 446 )
895	#endif
896	#endif
897
898	ivar = ivar + 1
899
900	!
901	!-- Deallocate temporary array
902	DEALLOCATE ( local_pf )
903
904	ENDDO
905
906	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
907
908	END SUBROUTINE data_output_3d

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