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source: palm/trunk/SOURCE/data_output_3d.f90 @ 3573

Last change on this file since 3573 was 3554, checked in by gronemeier, 6 years ago
renamed variable if to ivar; add variable description
Property svn:keywords set to `Id`
File size: 32.5 KB

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1	!> @file data_output_3d.f90
2	!------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the
6	! terms of the GNU General Public License as published by the Free Software
7	! Foundation, either version 3 of the License, or (at your option) any later
8	! version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2018 Leibniz Universitaet Hannover
18	!------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! ------------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: data_output_3d.f90 3554 2018-11-22 11:24:52Z raasch $
27	! add variable description; rename variable 'if' into 'ivar'
28	!
29	! 3525 2018-11-14 16:06:14Z kanani
30	! Changes related to clean-up of biometeorology (dom_dwd_user)
31	!
32	! 3467 2018-10-30 19:05:21Z suehring
33	! Implementation of a new aerosol module salsa.
34	!
35	! 3448 2018-10-29 18:14:31Z kanani
36	! Adjustment of biometeorology calls
37	!
38	! 3421 2018-10-24 18:39:32Z gronemeier
39	! Renamed output variables
40	!
41	! 3419 2018-10-24 17:27:31Z gronemeier
42	! bugfix: nx, ny are required in non-parallel case
43	!
44	! 3337 2018-10-12 15:17:09Z kanani
45	! (from branch resler)
46	! Add Biometeorology
47	!
48	! 3294 2018-10-01 02:37:10Z raasch
49	! changes concerning modularization of ocean option
50	!
51	! 3274 2018-09-24 15:42:55Z knoop
52	! Modularization of all bulk cloud physics code components
53	!
54	! 3241 2018-09-12 15:02:00Z raasch
55	! unused variables and format statements removed
56	!
57	! 3049 2018-05-29 13:52:36Z Giersch
58	! Error messages revised
59	!
60	! 3045 2018-05-28 07:55:41Z Giersch
61	! Error message revised
62	!
63	! 3014 2018-05-09 08:42:38Z maronga
64	! Added nzb_do and nzt_do for some modules for 3d output
65	!
66	! 3004 2018-04-27 12:33:25Z Giersch
67	! Allocation checks implemented (averaged data will be assigned to fill values
68	! if no allocation happened so far)
69	!
70	! 2967 2018-04-13 11:22:08Z raasch
71	! bugfix: missing parallel cpp-directives added
72	!
73	! 2817 2018-02-19 16:32:21Z knoop
74	! Preliminary gust module interface implemented
75	!
76	! 2766 2018-01-22 17:17:47Z kanani
77	! Removed preprocessor directive __chem
78	!
79	! 2756 2018-01-16 18:11:14Z suehring
80	! Fill values for 3D output of chemical species introduced.
81	!
82	! 2746 2018-01-15 12:06:04Z suehring
83	! Move flag plant canopy to modules
84	!
85	! 2718 2018-01-02 08:49:38Z maronga
86	! Corrected "Former revisions" section
87	!
88	! 2696 2017-12-14 17:12:51Z kanani
89	! Change in file header (GPL part)
90	! Implementation of turbulence_closure_mod (TG)
91	! Implementation of chemistry module (FK)
92	! Set fill values at topography grid points or e.g. non-natural-type surface
93	! in case of LSM output (MS)
94	!
95	! 2512 2017-10-04 08:26:59Z raasch
96	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
97	! no output of ghost layer data
98	!
99	! 2292 2017-06-20 09:51:42Z schwenkel
100	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
101	! includes two more prognostic equations for cloud drop concentration (nc)
102	! and cloud water content (qc).
103	!
104	! 2233 2017-05-30 18:08:54Z suehring
105	!
106	! 2232 2017-05-30 17:47:52Z suehring
107	! Adjustments to new topography concept
108	!
109	! 2209 2017-04-19 09:34:46Z kanani
110	! Added plant canopy model output
111	!
112	! 2031 2016-10-21 15:11:58Z knoop
113	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
114	!
115	! 2011 2016-09-19 17:29:57Z kanani
116	! Flag urban_surface is now defined in module control_parameters,
117	! changed prefix for urban surface model output to "usm_",
118	! introduced control parameter varnamelength for LEN of trimvar.
119	!
120	! 2007 2016-08-24 15:47:17Z kanani
121	! Added support for new urban surface model (temporary modifications of
122	! SELECT CASE ( ) necessary, see variable trimvar)
123	!
124	! 2000 2016-08-20 18:09:15Z knoop
125	! Forced header and separation lines into 80 columns
126	!
127	! 1980 2016-07-29 15:51:57Z suehring
128	! Bugfix, in order to steer user-defined output, setting flag found explicitly
129	! to .F.
130	!
131	! 1976 2016-07-27 13:28:04Z maronga
132	! Output of radiation quantities is now done directly in the respective module
133	!
134	! 1972 2016-07-26 07:52:02Z maronga
135	! Output of land surface quantities is now done directly in the respective module.
136	! Unnecessary directive __parallel removed.
137	!
138	! 1960 2016-07-12 16:34:24Z suehring
139	! Scalar surface flux added
140	!
141	! 1849 2016-04-08 11:33:18Z hoffmann
142	! prr moved to arrays_3d
143	!
144	! 1822 2016-04-07 07:49:42Z hoffmann
145	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
146	!
147	! 1808 2016-04-05 19:44:00Z raasch
148	! test output removed
149	!
150	! 1783 2016-03-06 18:36:17Z raasch
151	! name change of netcdf routines and module + related changes
152	!
153	! 1745 2016-02-05 13:06:51Z gronemeier
154	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
155	!
156	! 1691 2015-10-26 16:17:44Z maronga
157	! Added output of radiative heating rates for RRTMG
158	!
159	! 1682 2015-10-07 23:56:08Z knoop
160	! Code annotations made doxygen readable
161	!
162	! 1585 2015-04-30 07:05:52Z maronga
163	! Added support for RRTMG
164	!
165	! 1551 2015-03-03 14:18:16Z maronga
166	! Added suppport for land surface model and radiation model output. In the course
167	! of this action, the limits for vertical loops have been changed (from nzb and
168	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
169	! Moreover, a new vertical grid zs was introduced.
170	!
171	! 1359 2014-04-11 17:15:14Z hoffmann
172	! New particle structure integrated.
173	!
174	! 1353 2014-04-08 15:21:23Z heinze
175	! REAL constants provided with KIND-attribute
176	!
177	! 1327 2014-03-21 11:00:16Z raasch
178	! parts concerning avs output removed,
179	! -netcdf output queries
180	!
181	! 1320 2014-03-20 08:40:49Z raasch
182	! ONLY-attribute added to USE-statements,
183	! kind-parameters added to all INTEGER and REAL declaration statements,
184	! kinds are defined in new module kinds,
185	! old module precision_kind is removed,
186	! revision history before 2012 removed,
187	! comment fields (!:) to be used for variable explanations added to
188	! all variable declaration statements
189	!
190	! 1318 2014-03-17 13:35:16Z raasch
191	! barrier argument removed from cpu_log,
192	! module interfaces removed
193	!
194	! 1308 2014-03-13 14:58:42Z fricke
195	! Check, if the limit of the time dimension is exceeded for parallel output
196	! To increase the performance for parallel output, the following is done:
197	! - Update of time axis is only done by PE0
198	!
199	! 1244 2013-10-31 08:16:56Z raasch
200	! Bugfix for index bounds in case of 3d-parallel output
201	!
202	! 1115 2013-03-26 18:16:16Z hoffmann
203	! ql is calculated by calc_liquid_water_content
204	!
205	! 1106 2013-03-04 05:31:38Z raasch
206	! array_kind renamed precision_kind
207	!
208	! 1076 2012-12-05 08:30:18Z hoffmann
209	! Bugfix in output of ql
210	!
211	! 1053 2012-11-13 17:11:03Z hoffmann
212	! +nr, qr, prr, qc and averaged quantities
213	!
214	! 1036 2012-10-22 13:43:42Z raasch
215	! code put under GPL (PALM 3.9)
216	!
217	! 1031 2012-10-19 14:35:30Z raasch
218	! netCDF4 without parallel file support implemented
219	!
220	! 1007 2012-09-19 14:30:36Z franke
221	! Bugfix: missing calculation of ql_vp added
222	!
223	! Revision 1.1 1997/09/03 06:29:36 raasch
224	! Initial revision
225	!
226	!
227	! Description:
228	! ------------
229	!> Output of the 3D-arrays in netCDF and/or AVS format.
230	!------------------------------------------------------------------------------!
231	SUBROUTINE data_output_3d( av )
232
233
234	USE arrays_3d, &
235	ONLY: d_exner, e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, s, &
236	tend, u, v, vpt, w
237
238	USE averaging
239
240	USE basic_constants_and_equations_mod, &
241	ONLY: lv_d_cp
242
243	USE biometeorology_mod, &
244	ONLY: bio_data_output_3d
245
246	USE bulk_cloud_model_mod, &
247	ONLY: bulk_cloud_model, bcm_data_output_3d
248
249	USE chemistry_model_mod, &
250	ONLY: chem_data_output_3d
251
252	USE control_parameters, &
253	ONLY: air_chemistry, biometeorology, do3d, do3d_no, do3d_time_count, &
254	io_blocks, io_group, land_surface, message_string, &
255	ntdim_3d, nz_do3d, ocean_mode, plant_canopy, &
256	psolver, simulated_time, time_since_reference_point, &
257	urban_surface, varnamelength
258
259	USE cpulog, &
260	ONLY: log_point, cpu_log
261
262	USE gust_mod, &
263	ONLY: gust_data_output_3d, gust_module_enabled
264
265	#if defined( __parallel )
266	USE indices, &
267	ONLY: nbgp, nxl, nxlg, nxr, nxrg, nyn, nyng, nys, nysg, nzb, nzt, &
268	wall_flags_0
269	#else
270	USE indices, &
271	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
272	nzt, wall_flags_0
273	#endif
274
275	USE kinds
276
277	USE land_surface_model_mod, &
278	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
279
280	#if defined( __netcdf )
281	USE NETCDF
282	#endif
283
284	USE netcdf_interface, &
285	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
286	netcdf_data_format, netcdf_handle_error
287
288	USE ocean_mod, &
289	ONLY: ocean_data_output_3d
290
291	USE particle_attributes, &
292	ONLY: grid_particles, number_of_particles, particles, &
293	particle_advection_start, prt_count
294
295	USE pegrid
296
297	USE plant_canopy_model_mod, &
298	ONLY: pcm_data_output_3d
299
300	USE radiation_model_mod, &
301	ONLY: nzub, nzut, radiation, radiation_data_output_3d
302
303	USE salsa_mod, &
304	ONLY: salsa, salsa_data_output_3d
305
306	USE turbulence_closure_mod, &
307	ONLY: tcm_data_output_3d
308
309	USE urban_surface_mod, &
310	ONLY: usm_data_output_3d
311
312
313	IMPLICIT NONE
314
315	INTEGER(iwp) :: av !< flag for (non-)average output
316	INTEGER(iwp) :: flag_nr !< number of masking flag
317	INTEGER(iwp) :: i !< loop index
318	INTEGER(iwp) :: ivar !< variable index
319	INTEGER(iwp) :: j !< loop index
320	INTEGER(iwp) :: k !< loop index
321	INTEGER(iwp) :: n !< loop index
322	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
323	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
324
325	LOGICAL :: found !< true if output variable was found
326	LOGICAL :: resorted !< true if variable is resorted
327
328	REAL(wp) :: mean_r !< mean particle radius
329	REAL(wp) :: s_r2 !< sum( particle-radius**2 )
330	REAL(wp) :: s_r3 !< sum( particle-radius**3 )
331
332	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !< output array
333
334	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !< pointer to array which shall be output
335
336	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
337
338	!
339	!-- Return, if nothing to output
340	IF ( do3d_no(av) == 0 ) RETURN
341
342	CALL cpu_log (log_point(14),'data_output_3d','start')
343
344	!
345	!-- Open output file.
346	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
347	!-- own file and writes the data of its subdomain in binary format. After the
348	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
349	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
350	IF ( netcdf_data_format < 5 ) THEN
351	#if defined( __parallel )
352	CALL check_open( 30 )
353	#endif
354	IF ( myid == 0 ) CALL check_open( 106+av*10 )
355	ELSE
356	CALL check_open( 106+av*10 )
357	ENDIF
358
359	!
360	!-- For parallel netcdf output the time axis must be limited. Return, if this
361	!-- limit is exceeded. This could be the case, if the simulated time exceeds
362	!-- the given end time by the length of the given output interval.
363	IF ( netcdf_data_format > 4 ) THEN
364	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
365	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
366	simulated_time, '&because the maximum ', &
367	'number of output time levels is ', &
368	'exceeded.'
369	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
370	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
371	RETURN
372	ENDIF
373	ENDIF
374
375	!
376	!-- Update the netCDF time axis
377	!-- In case of parallel output, this is only done by PE0 to increase the
378	!-- performance.
379	#if defined( __netcdf )
380	do3d_time_count(av) = do3d_time_count(av) + 1
381	IF ( myid == 0 ) THEN
382	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
383	(/ time_since_reference_point /), &
384	start = (/ do3d_time_count(av) /), &
385	count = (/ 1 /) )
386	CALL netcdf_handle_error( 'data_output_3d', 376 )
387	ENDIF
388	#endif
389
390	!
391	!-- Loop over all variables to be written.
392	ivar = 1
393
394	DO WHILE ( do3d(av,ivar)(1:1) /= ' ' )
395
396	!
397	!-- Temporary solution to account for data output within the new urban
398	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
399	!-- Store the array chosen on the temporary array.
400	trimvar = TRIM( do3d(av,ivar) )
401	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
402	trimvar = 'usm_output'
403	resorted = .TRUE.
404	nzb_do = nzub
405	nzt_do = nzut
406	ELSE
407	resorted = .FALSE.
408	nzb_do = nzb
409	nzt_do = nz_do3d
410	ENDIF
411	!
412	!-- Set flag to steer output of radiation, land-surface, or user-defined
413	!-- quantities
414	found = .FALSE.
415	!
416	!-- Allocate a temporary array with the desired output dimensions.
417	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
418	!
419	!-- Before each output, set array local_pf to fill value
420	local_pf = fill_value
421	!
422	!-- Set masking flag for topography for not resorted arrays
423	flag_nr = 0
424
425	SELECT CASE ( trimvar )
426
427	CASE ( 'e' )
428	IF ( av == 0 ) THEN
429	to_be_resorted => e
430	ELSE
431	IF ( .NOT. ALLOCATED( e_av ) ) THEN
432	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
433	e_av = REAL( fill_value, KIND = wp )
434	ENDIF
435	to_be_resorted => e_av
436	ENDIF
437
438	CASE ( 'thetal' )
439	IF ( av == 0 ) THEN
440	to_be_resorted => pt
441	ELSE
442	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
443	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
444	lpt_av = REAL( fill_value, KIND = wp )
445	ENDIF
446	to_be_resorted => lpt_av
447	ENDIF
448
449	CASE ( 'p' )
450	IF ( av == 0 ) THEN
451	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
452	to_be_resorted => p
453	ELSE
454	IF ( .NOT. ALLOCATED( p_av ) ) THEN
455	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
456	p_av = REAL( fill_value, KIND = wp )
457	ENDIF
458	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
459	to_be_resorted => p_av
460	ENDIF
461
462	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
463	IF ( av == 0 ) THEN
464	IF ( simulated_time >= particle_advection_start ) THEN
465	tend = prt_count
466	ELSE
467	tend = 0.0_wp
468	ENDIF
469	DO i = nxl, nxr
470	DO j = nys, nyn
471	DO k = nzb_do, nzt_do
472	local_pf(i,j,k) = tend(k,j,i)
473	ENDDO
474	ENDDO
475	ENDDO
476	resorted = .TRUE.
477	ELSE
478	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
479	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
480	pc_av = REAL( fill_value, KIND = wp )
481	ENDIF
482	to_be_resorted => pc_av
483	ENDIF
484
485	CASE ( 'pr' ) ! mean particle radius (effective radius)
486	IF ( av == 0 ) THEN
487	IF ( simulated_time >= particle_advection_start ) THEN
488	DO i = nxl, nxr
489	DO j = nys, nyn
490	DO k = nzb_do, nzt_do
491	number_of_particles = prt_count(k,j,i)
492	IF (number_of_particles <= 0) CYCLE
493	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
494	s_r2 = 0.0_wp
495	s_r3 = 0.0_wp
496	DO n = 1, number_of_particles
497	IF ( particles(n)%particle_mask ) THEN
498	s_r2 = s_r2 + particles(n)%radius*2 &
499	particles(n)%weight_factor
500	s_r3 = s_r3 + particles(n)%radius*3 &
501	particles(n)%weight_factor
502	ENDIF
503	ENDDO
504	IF ( s_r2 > 0.0_wp ) THEN
505	mean_r = s_r3 / s_r2
506	ELSE
507	mean_r = 0.0_wp
508	ENDIF
509	tend(k,j,i) = mean_r
510	ENDDO
511	ENDDO
512	ENDDO
513	ELSE
514	tend = 0.0_wp
515	ENDIF
516	DO i = nxl, nxr
517	DO j = nys, nyn
518	DO k = nzb_do, nzt_do
519	local_pf(i,j,k) = tend(k,j,i)
520	ENDDO
521	ENDDO
522	ENDDO
523	resorted = .TRUE.
524	ELSE
525	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
526	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
527	pr_av = REAL( fill_value, KIND = wp )
528	ENDIF
529	to_be_resorted => pr_av
530	ENDIF
531
532	CASE ( 'theta' )
533	IF ( av == 0 ) THEN
534	IF ( .NOT. bulk_cloud_model ) THEN
535	to_be_resorted => pt
536	ELSE
537	DO i = nxl, nxr
538	DO j = nys, nyn
539	DO k = nzb_do, nzt_do
540	local_pf(i,j,k) = pt(k,j,i) + lv_d_cp * &
541	d_exner(k) * &
542	ql(k,j,i)
543	ENDDO
544	ENDDO
545	ENDDO
546	resorted = .TRUE.
547	ENDIF
548	ELSE
549	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
550	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
551	pt_av = REAL( fill_value, KIND = wp )
552	ENDIF
553	to_be_resorted => pt_av
554	ENDIF
555
556	CASE ( 'q' )
557	IF ( av == 0 ) THEN
558	to_be_resorted => q
559	ELSE
560	IF ( .NOT. ALLOCATED( q_av ) ) THEN
561	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
562	q_av = REAL( fill_value, KIND = wp )
563	ENDIF
564	to_be_resorted => q_av
565	ENDIF
566
567	CASE ( 'ql' )
568	IF ( av == 0 ) THEN
569	to_be_resorted => ql
570	ELSE
571	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
572	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
573	ql_av = REAL( fill_value, KIND = wp )
574	ENDIF
575	to_be_resorted => ql_av
576	ENDIF
577
578	CASE ( 'ql_c' )
579	IF ( av == 0 ) THEN
580	to_be_resorted => ql_c
581	ELSE
582	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
583	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
584	ql_c_av = REAL( fill_value, KIND = wp )
585	ENDIF
586	to_be_resorted => ql_c_av
587	ENDIF
588
589	CASE ( 'ql_v' )
590	IF ( av == 0 ) THEN
591	to_be_resorted => ql_v
592	ELSE
593	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
594	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
595	ql_v_av = REAL( fill_value, KIND = wp )
596	ENDIF
597	to_be_resorted => ql_v_av
598	ENDIF
599
600	CASE ( 'ql_vp' )
601	IF ( av == 0 ) THEN
602	IF ( simulated_time >= particle_advection_start ) THEN
603	DO i = nxl, nxr
604	DO j = nys, nyn
605	DO k = nzb_do, nzt_do
606	number_of_particles = prt_count(k,j,i)
607	IF (number_of_particles <= 0) CYCLE
608	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
609	DO n = 1, number_of_particles
610	IF ( particles(n)%particle_mask ) THEN
611	tend(k,j,i) = tend(k,j,i) + &
612	particles(n)%weight_factor / &
613	prt_count(k,j,i)
614	ENDIF
615	ENDDO
616	ENDDO
617	ENDDO
618	ENDDO
619	ELSE
620	tend = 0.0_wp
621	ENDIF
622	DO i = nxl, nxr
623	DO j = nys, nyn
624	DO k = nzb_do, nzt_do
625	local_pf(i,j,k) = tend(k,j,i)
626	ENDDO
627	ENDDO
628	ENDDO
629	resorted = .TRUE.
630	ELSE
631	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
632	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
633	ql_vp_av = REAL( fill_value, KIND = wp )
634	ENDIF
635	to_be_resorted => ql_vp_av
636	ENDIF
637
638	CASE ( 'qv' )
639	IF ( av == 0 ) THEN
640	DO i = nxl, nxr
641	DO j = nys, nyn
642	DO k = nzb_do, nzt_do
643	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
644	ENDDO
645	ENDDO
646	ENDDO
647	resorted = .TRUE.
648	ELSE
649	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
650	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
651	qv_av = REAL( fill_value, KIND = wp )
652	ENDIF
653	to_be_resorted => qv_av
654	ENDIF
655
656	CASE ( 's' )
657	IF ( av == 0 ) THEN
658	to_be_resorted => s
659	ELSE
660	IF ( .NOT. ALLOCATED( s_av ) ) THEN
661	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
662	s_av = REAL( fill_value, KIND = wp )
663	ENDIF
664	to_be_resorted => s_av
665	ENDIF
666
667	CASE ( 'u' )
668	flag_nr = 1
669	IF ( av == 0 ) THEN
670	to_be_resorted => u
671	ELSE
672	IF ( .NOT. ALLOCATED( u_av ) ) THEN
673	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
674	u_av = REAL( fill_value, KIND = wp )
675	ENDIF
676	to_be_resorted => u_av
677	ENDIF
678
679	CASE ( 'v' )
680	flag_nr = 2
681	IF ( av == 0 ) THEN
682	to_be_resorted => v
683	ELSE
684	IF ( .NOT. ALLOCATED( v_av ) ) THEN
685	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
686	v_av = REAL( fill_value, KIND = wp )
687	ENDIF
688	to_be_resorted => v_av
689	ENDIF
690
691	CASE ( 'thetav' )
692	IF ( av == 0 ) THEN
693	to_be_resorted => vpt
694	ELSE
695	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
696	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
697	vpt_av = REAL( fill_value, KIND = wp )
698	ENDIF
699	to_be_resorted => vpt_av
700	ENDIF
701
702	CASE ( 'w' )
703	flag_nr = 3
704	IF ( av == 0 ) THEN
705	to_be_resorted => w
706	ELSE
707	IF ( .NOT. ALLOCATED( w_av ) ) THEN
708	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
709	w_av = REAL( fill_value, KIND = wp )
710	ENDIF
711	to_be_resorted => w_av
712	ENDIF
713	!
714	!-- Block of urban surface model outputs
715	CASE ( 'usm_output' )
716	CALL usm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
717	nzb_do, nzt_do )
718
719	CASE DEFAULT
720
721	!
722	!-- Quantities of other modules
723	IF ( .NOT. found .AND. bulk_cloud_model ) THEN
724	CALL bcm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
725	nzb_do, nzt_do )
726	resorted = .TRUE.
727	ENDIF
728
729	IF ( .NOT. found .AND. air_chemistry ) THEN
730	CALL chem_data_output_3d( av, do3d(av,ivar), found, &
731	local_pf, fill_value, nzb_do, nzt_do )
732	resorted = .TRUE.
733	ENDIF
734
735	IF ( .NOT. found .AND. gust_module_enabled ) THEN
736	CALL gust_data_output_3d( av, do3d(av,ivar), found, local_pf, &
737	nzb_do, nzt_do )
738	resorted = .TRUE.
739	ENDIF
740
741	IF ( .NOT. found .AND. land_surface ) THEN
742	!
743	!-- For soil model quantities, it is required to re-allocate local_pf
744	nzb_do = nzb_soil
745	nzt_do = nzt_soil
746
747	DEALLOCATE ( local_pf )
748	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
749	local_pf = fill_value
750
751	CALL lsm_data_output_3d( av, do3d(av,ivar), found, local_pf )
752	resorted = .TRUE.
753
754	!
755	!-- If no soil model variable was found, re-allocate local_pf
756	IF ( .NOT. found ) THEN
757	nzb_do = nzb
758	nzt_do = nz_do3d
759
760	DEALLOCATE ( local_pf )
761	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
762	ENDIF
763
764	ENDIF
765
766	IF ( .NOT. found .AND. ocean_mode ) THEN
767	CALL ocean_data_output_3d( av, do3d(av,ivar), found, local_pf, &
768	nzb_do, nzt_do )
769	resorted = .TRUE.
770	ENDIF
771
772	IF ( .NOT. found .AND. plant_canopy ) THEN
773	CALL pcm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
774	fill_value, nzb_do, nzt_do )
775	resorted = .TRUE.
776	ENDIF
777
778	IF ( .NOT. found .AND. radiation ) THEN
779	CALL radiation_data_output_3d( av, do3d(av,ivar), found, &
780	local_pf, nzb_do, nzt_do )
781	resorted = .TRUE.
782	ENDIF
783
784	IF ( .NOT. found ) THEN
785	CALL tcm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
786	nzb_do, nzt_do )
787	resorted = .TRUE.
788	ENDIF
789
790	!
791	!-- SALSA output
792	IF ( .NOT. found .AND. salsa ) THEN
793	CALL salsa_data_output_3d( av, do3d(av,ivar), found, local_pf )
794	resorted = .TRUE.
795	ENDIF
796
797	IF ( .NOT. found .AND. biometeorology ) THEN
798	CALL bio_data_output_3d( av, do3d(av,ivar), found, local_pf, &
799	nzb_do, nzt_do )
800	ENDIF
801
802	!
803	!-- User defined quantities
804	IF ( .NOT. found ) THEN
805	CALL user_data_output_3d( av, do3d(av,ivar), found, local_pf, &
806	nzb_do, nzt_do )
807	resorted = .TRUE.
808	ENDIF
809
810	IF ( .NOT. found ) THEN
811	message_string = 'no output available for: ' // &
812	TRIM( do3d(av,ivar) )
813	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
814	ENDIF
815
816	END SELECT
817
818	!
819	!-- Resort the array to be output, if not done above
820	IF ( .NOT. resorted ) THEN
821	DO i = nxl, nxr
822	DO j = nys, nyn
823	DO k = nzb_do, nzt_do
824	local_pf(i,j,k) = MERGE( &
825	to_be_resorted(k,j,i), &
826	REAL( fill_value, KIND = wp ), &
827	BTEST( wall_flags_0(k,j,i), flag_nr ) )
828	ENDDO
829	ENDDO
830	ENDDO
831	ENDIF
832
833	!
834	!-- Output of the 3D-array
835	#if defined( __parallel )
836	IF ( netcdf_data_format < 5 ) THEN
837	!
838	!-- Non-parallel netCDF output. Data is output in parallel in
839	!-- FORTRAN binary format here, and later collected into one file by
840	!-- combine_plot_fields
841	IF ( myid == 0 ) THEN
842	WRITE ( 30 ) time_since_reference_point, &
843	do3d_time_count(av), av
844	ENDIF
845	DO i = 0, io_blocks-1
846	IF ( i == io_group ) THEN
847	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
848	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
849	ENDIF
850
851	CALL MPI_BARRIER( comm2d, ierr )
852
853	ENDDO
854
855	ELSE
856	#if defined( __netcdf )
857	!
858	!-- Parallel output in netCDF4/HDF5 format.
859	! IF ( nxr == nx .AND. nyn /= ny ) THEN
860	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
861	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
862	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
863	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
864	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
865	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
866	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
867	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
868	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
869	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
870	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
871	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
872	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
873	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
874	! ELSE
875	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
876	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
877	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
878	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
879	! ENDIF
880	CALL netcdf_handle_error( 'data_output_3d', 386 )
881	#endif
882	ENDIF
883	#else
884	#if defined( __netcdf )
885	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
886	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
887	start = (/ 1, 1, 1, do3d_time_count(av) /), &
888	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
889	CALL netcdf_handle_error( 'data_output_3d', 446 )
890	#endif
891	#endif
892
893	ivar = ivar + 1
894
895	!
896	!-- Deallocate temporary array
897	DEALLOCATE ( local_pf )
898
899	ENDDO
900
901	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
902
903	END SUBROUTINE data_output_3d

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