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source: palm/trunk/SOURCE/data_output_3d.f90 @ 3027

Last change on this file since 3027 was 3014, checked in by maronga, 7 years ago
series of bugfixes
Property svn:keywords set to `Id`
File size: 32.9 KB

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1	!> @file data_output_3d.f90
2	!------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the
6	! terms of the GNU General Public License as published by the Free Software
7	! Foundation, either version 3 of the License, or (at your option) any later
8	! version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2018 Leibniz Universitaet Hannover
18	!------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! ------------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: data_output_3d.f90 3014 2018-05-09 08:42:38Z knoop $
27	! Added nzb_do and nzt_do for some modules for 3d output
28	!
29	! 3004 2018-04-27 12:33:25Z Giersch
30	! Allocation checks implemented (averaged data will be assigned to fill values
31	! if no allocation happened so far)
32	!
33	! 2967 2018-04-13 11:22:08Z raasch
34	! bugfix: missing parallel cpp-directives added
35	!
36	! 2817 2018-02-19 16:32:21Z knoop
37	! Preliminary gust module interface implemented
38	!
39	! 2766 2018-01-22 17:17:47Z kanani
40	! Removed preprocessor directive __chem
41	!
42	! 2756 2018-01-16 18:11:14Z suehring
43	! Fill values for 3D output of chemical species introduced.
44	!
45	! 2746 2018-01-15 12:06:04Z suehring
46	! Move flag plant canopy to modules
47	!
48	! 2718 2018-01-02 08:49:38Z maronga
49	! Corrected "Former revisions" section
50	!
51	! 2696 2017-12-14 17:12:51Z kanani
52	! Change in file header (GPL part)
53	! Implementation of turbulence_closure_mod (TG)
54	! Implementation of chemistry module (FK)
55	! Set fill values at topography grid points or e.g. non-natural-type surface
56	! in case of LSM output (MS)
57	!
58	! 2512 2017-10-04 08:26:59Z raasch
59	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
60	! no output of ghost layer data
61	!
62	! 2292 2017-06-20 09:51:42Z schwenkel
63	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
64	! includes two more prognostic equations for cloud drop concentration (nc)
65	! and cloud water content (qc).
66	!
67	! 2233 2017-05-30 18:08:54Z suehring
68	!
69	! 2232 2017-05-30 17:47:52Z suehring
70	! Adjustments to new topography concept
71	!
72	! 2209 2017-04-19 09:34:46Z kanani
73	! Added plant canopy model output
74	!
75	! 2031 2016-10-21 15:11:58Z knoop
76	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
77	!
78	! 2011 2016-09-19 17:29:57Z kanani
79	! Flag urban_surface is now defined in module control_parameters,
80	! changed prefix for urban surface model output to "usm_",
81	! introduced control parameter varnamelength for LEN of trimvar.
82	!
83	! 2007 2016-08-24 15:47:17Z kanani
84	! Added support for new urban surface model (temporary modifications of
85	! SELECT CASE ( ) necessary, see variable trimvar)
86	!
87	! 2000 2016-08-20 18:09:15Z knoop
88	! Forced header and separation lines into 80 columns
89	!
90	! 1980 2016-07-29 15:51:57Z suehring
91	! Bugfix, in order to steer user-defined output, setting flag found explicitly
92	! to .F.
93	!
94	! 1976 2016-07-27 13:28:04Z maronga
95	! Output of radiation quantities is now done directly in the respective module
96	!
97	! 1972 2016-07-26 07:52:02Z maronga
98	! Output of land surface quantities is now done directly in the respective module.
99	! Unnecessary directive __parallel removed.
100	!
101	! 1960 2016-07-12 16:34:24Z suehring
102	! Scalar surface flux added
103	!
104	! 1849 2016-04-08 11:33:18Z hoffmann
105	! prr moved to arrays_3d
106	!
107	! 1822 2016-04-07 07:49:42Z hoffmann
108	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
109	!
110	! 1808 2016-04-05 19:44:00Z raasch
111	! test output removed
112	!
113	! 1783 2016-03-06 18:36:17Z raasch
114	! name change of netcdf routines and module + related changes
115	!
116	! 1745 2016-02-05 13:06:51Z gronemeier
117	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
118	!
119	! 1691 2015-10-26 16:17:44Z maronga
120	! Added output of radiative heating rates for RRTMG
121	!
122	! 1682 2015-10-07 23:56:08Z knoop
123	! Code annotations made doxygen readable
124	!
125	! 1585 2015-04-30 07:05:52Z maronga
126	! Added support for RRTMG
127	!
128	! 1551 2015-03-03 14:18:16Z maronga
129	! Added suppport for land surface model and radiation model output. In the course
130	! of this action, the limits for vertical loops have been changed (from nzb and
131	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
132	! Moreover, a new vertical grid zs was introduced.
133	!
134	! 1359 2014-04-11 17:15:14Z hoffmann
135	! New particle structure integrated.
136	!
137	! 1353 2014-04-08 15:21:23Z heinze
138	! REAL constants provided with KIND-attribute
139	!
140	! 1327 2014-03-21 11:00:16Z raasch
141	! parts concerning avs output removed,
142	! -netcdf output queries
143	!
144	! 1320 2014-03-20 08:40:49Z raasch
145	! ONLY-attribute added to USE-statements,
146	! kind-parameters added to all INTEGER and REAL declaration statements,
147	! kinds are defined in new module kinds,
148	! old module precision_kind is removed,
149	! revision history before 2012 removed,
150	! comment fields (!:) to be used for variable explanations added to
151	! all variable declaration statements
152	!
153	! 1318 2014-03-17 13:35:16Z raasch
154	! barrier argument removed from cpu_log,
155	! module interfaces removed
156	!
157	! 1308 2014-03-13 14:58:42Z fricke
158	! Check, if the limit of the time dimension is exceeded for parallel output
159	! To increase the performance for parallel output, the following is done:
160	! - Update of time axis is only done by PE0
161	!
162	! 1244 2013-10-31 08:16:56Z raasch
163	! Bugfix for index bounds in case of 3d-parallel output
164	!
165	! 1115 2013-03-26 18:16:16Z hoffmann
166	! ql is calculated by calc_liquid_water_content
167	!
168	! 1106 2013-03-04 05:31:38Z raasch
169	! array_kind renamed precision_kind
170	!
171	! 1076 2012-12-05 08:30:18Z hoffmann
172	! Bugfix in output of ql
173	!
174	! 1053 2012-11-13 17:11:03Z hoffmann
175	! +nr, qr, prr, qc and averaged quantities
176	!
177	! 1036 2012-10-22 13:43:42Z raasch
178	! code put under GPL (PALM 3.9)
179	!
180	! 1031 2012-10-19 14:35:30Z raasch
181	! netCDF4 without parallel file support implemented
182	!
183	! 1007 2012-09-19 14:30:36Z franke
184	! Bugfix: missing calculation of ql_vp added
185	!
186	! Revision 1.1 1997/09/03 06:29:36 raasch
187	! Initial revision
188	!
189	!
190	! Description:
191	! ------------
192	!> Output of the 3D-arrays in netCDF and/or AVS format.
193	!------------------------------------------------------------------------------!
194	SUBROUTINE data_output_3d( av )
195
196
197	USE arrays_3d, &
198	ONLY: e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, rho_ocean, s, &
199	sa, tend, u, v, vpt, w
200
201	USE averaging
202
203	USE chemistry_model_mod, &
204	ONLY: chem_data_output_3d
205
206	USE cloud_parameters, &
207	ONLY: l_d_cp, pt_d_t
208
209	USE control_parameters, &
210	ONLY: air_chemistry, cloud_physics, do3d, do3d_no, do3d_time_count, &
211	io_blocks, io_group, land_surface, message_string, &
212	ntdim_3d, nz_do3d, plant_canopy, &
213	psolver, simulated_time, time_since_reference_point, &
214	urban_surface, varnamelength
215
216	USE cpulog, &
217	ONLY: log_point, cpu_log
218
219	USE gust_mod, &
220	ONLY: gust_data_output_3d, gust_module_enabled
221
222	USE indices, &
223	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
224	nzt, wall_flags_0
225
226	USE kinds
227
228	USE land_surface_model_mod, &
229	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
230
231	#if defined( __netcdf )
232	USE NETCDF
233	#endif
234
235	USE netcdf_interface, &
236	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
237	netcdf_data_format, netcdf_handle_error
238
239	USE particle_attributes, &
240	ONLY: grid_particles, number_of_particles, particles, &
241	particle_advection_start, prt_count
242
243	USE pegrid
244
245	USE plant_canopy_model_mod, &
246	ONLY: pcm_data_output_3d
247
248	USE radiation_model_mod, &
249	ONLY: nzub, nzut, radiation, radiation_data_output_3d
250
251	USE turbulence_closure_mod, &
252	ONLY: tcm_data_output_3d
253
254	USE urban_surface_mod, &
255	ONLY: usm_data_output_3d
256
257
258	IMPLICIT NONE
259
260	INTEGER(iwp) :: av !<
261	INTEGER(iwp) :: flag_nr !< number of masking flag
262	INTEGER(iwp) :: i !<
263	INTEGER(iwp) :: if !<
264	INTEGER(iwp) :: j !<
265	INTEGER(iwp) :: k !<
266	INTEGER(iwp) :: n !<
267	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
268	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
269
270	LOGICAL :: found !<
271	LOGICAL :: resorted !<
272
273	REAL(wp) :: mean_r !<
274	REAL(wp) :: s_r2 !<
275	REAL(wp) :: s_r3 !<
276
277	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
278
279	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
280
281	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
282
283	!
284	!-- Return, if nothing to output
285	IF ( do3d_no(av) == 0 ) RETURN
286
287	CALL cpu_log (log_point(14),'data_output_3d','start')
288
289	!
290	!-- Open output file.
291	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
292	!-- own file and writes the data of its subdomain in binary format. After the
293	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
294	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
295	IF ( netcdf_data_format < 5 ) THEN
296	#if defined( __parallel )
297	CALL check_open( 30 )
298	#endif
299	IF ( myid == 0 ) CALL check_open( 106+av*10 )
300	ELSE
301	CALL check_open( 106+av*10 )
302	ENDIF
303
304	!
305	!-- For parallel netcdf output the time axis must be limited. Return, if this
306	!-- limit is exceeded. This could be the case, if the simulated time exceeds
307	!-- the given end time by the length of the given output interval.
308	IF ( netcdf_data_format > 4 ) THEN
309	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
310	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
311	simulated_time, '&because the maximum ', &
312	'number of output time levels is ', &
313	'exceeded.'
314	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
315	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
316	RETURN
317	ENDIF
318	ENDIF
319
320	!
321	!-- Update the netCDF time axis
322	!-- In case of parallel output, this is only done by PE0 to increase the
323	!-- performance.
324	#if defined( __netcdf )
325	do3d_time_count(av) = do3d_time_count(av) + 1
326	IF ( myid == 0 ) THEN
327	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
328	(/ time_since_reference_point /), &
329	start = (/ do3d_time_count(av) /), &
330	count = (/ 1 /) )
331	CALL netcdf_handle_error( 'data_output_3d', 376 )
332	ENDIF
333	#endif
334
335	!
336	!-- Loop over all variables to be written.
337	if = 1
338
339	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
340
341	!
342	!-- Temporary solution to account for data output within the new urban
343	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
344	!-- Store the array chosen on the temporary array.
345	trimvar = TRIM( do3d(av,if) )
346	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
347	trimvar = 'usm_output'
348	resorted = .TRUE.
349	nzb_do = nzub
350	nzt_do = nzut
351	ELSE
352	resorted = .FALSE.
353	nzb_do = nzb
354	nzt_do = nz_do3d
355	ENDIF
356	!
357	!-- Set flag to steer output of radiation, land-surface, or user-defined
358	!-- quantities
359	found = .FALSE.
360	!
361	!-- Allocate a temporary array with the desired output dimensions.
362	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
363	!
364	!-- Before each output, set array local_pf to fill value
365	local_pf = fill_value
366	!
367	!-- Set masking flag for topography for not resorted arrays
368	flag_nr = 0
369
370	SELECT CASE ( trimvar )
371
372	CASE ( 'e' )
373	IF ( av == 0 ) THEN
374	to_be_resorted => e
375	ELSE
376	IF ( .NOT. ALLOCATED( e_av ) ) THEN
377	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
378	e_av = REAL( fill_value, KIND = wp )
379	ENDIF
380	to_be_resorted => e_av
381	ENDIF
382
383	CASE ( 'lpt' )
384	IF ( av == 0 ) THEN
385	to_be_resorted => pt
386	ELSE
387	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
388	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
389	lpt_av = REAL( fill_value, KIND = wp )
390	ENDIF
391	to_be_resorted => lpt_av
392	ENDIF
393
394	CASE ( 'nc' )
395	IF ( av == 0 ) THEN
396	to_be_resorted => nc
397	ELSE
398	IF ( .NOT. ALLOCATED( nc_av ) ) THEN
399	ALLOCATE( nc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
400	nc_av = REAL( fill_value, KIND = wp )
401	ENDIF
402	to_be_resorted => nc_av
403	ENDIF
404
405	CASE ( 'nr' )
406	IF ( av == 0 ) THEN
407	to_be_resorted => nr
408	ELSE
409	IF ( .NOT. ALLOCATED( nr_av ) ) THEN
410	ALLOCATE( nr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
411	nr_av = REAL( fill_value, KIND = wp )
412	ENDIF
413	to_be_resorted => nr_av
414	ENDIF
415
416	CASE ( 'p' )
417	IF ( av == 0 ) THEN
418	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
419	to_be_resorted => p
420	ELSE
421	IF ( .NOT. ALLOCATED( p_av ) ) THEN
422	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
423	p_av = REAL( fill_value, KIND = wp )
424	ENDIF
425	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
426	to_be_resorted => p_av
427	ENDIF
428
429	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
430	IF ( av == 0 ) THEN
431	IF ( simulated_time >= particle_advection_start ) THEN
432	tend = prt_count
433	ELSE
434	tend = 0.0_wp
435	ENDIF
436	DO i = nxl, nxr
437	DO j = nys, nyn
438	DO k = nzb_do, nzt_do
439	local_pf(i,j,k) = tend(k,j,i)
440	ENDDO
441	ENDDO
442	ENDDO
443	resorted = .TRUE.
444	ELSE
445	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
446	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
447	pc_av = REAL( fill_value, KIND = wp )
448	ENDIF
449	to_be_resorted => pc_av
450	ENDIF
451
452	CASE ( 'pr' ) ! mean particle radius (effective radius)
453	IF ( av == 0 ) THEN
454	IF ( simulated_time >= particle_advection_start ) THEN
455	DO i = nxl, nxr
456	DO j = nys, nyn
457	DO k = nzb_do, nzt_do
458	number_of_particles = prt_count(k,j,i)
459	IF (number_of_particles <= 0) CYCLE
460	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
461	s_r2 = 0.0_wp
462	s_r3 = 0.0_wp
463	DO n = 1, number_of_particles
464	IF ( particles(n)%particle_mask ) THEN
465	s_r2 = s_r2 + particles(n)%radius*2 &
466	particles(n)%weight_factor
467	s_r3 = s_r3 + particles(n)%radius*3 &
468	particles(n)%weight_factor
469	ENDIF
470	ENDDO
471	IF ( s_r2 > 0.0_wp ) THEN
472	mean_r = s_r3 / s_r2
473	ELSE
474	mean_r = 0.0_wp
475	ENDIF
476	tend(k,j,i) = mean_r
477	ENDDO
478	ENDDO
479	ENDDO
480	ELSE
481	tend = 0.0_wp
482	ENDIF
483	DO i = nxl, nxr
484	DO j = nys, nyn
485	DO k = nzb_do, nzt_do
486	local_pf(i,j,k) = tend(k,j,i)
487	ENDDO
488	ENDDO
489	ENDDO
490	resorted = .TRUE.
491	ELSE
492	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
493	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
494	pr_av = REAL( fill_value, KIND = wp )
495	ENDIF
496	to_be_resorted => pr_av
497	ENDIF
498
499	CASE ( 'prr' )
500	IF ( av == 0 ) THEN
501	DO i = nxl, nxr
502	DO j = nys, nyn
503	DO k = nzb_do, nzt_do
504	local_pf(i,j,k) = prr(k,j,i)
505	ENDDO
506	ENDDO
507	ENDDO
508	ELSE
509	IF ( .NOT. ALLOCATED( prr_av ) ) THEN
510	ALLOCATE( prr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
511	prr_av = REAL( fill_value, KIND = wp )
512	ENDIF
513	DO i = nxl, nxr
514	DO j = nys, nyn
515	DO k = nzb_do, nzt_do
516	local_pf(i,j,k) = prr_av(k,j,i)
517	ENDDO
518	ENDDO
519	ENDDO
520	ENDIF
521	resorted = .TRUE.
522
523	CASE ( 'pt' )
524	IF ( av == 0 ) THEN
525	IF ( .NOT. cloud_physics ) THEN
526	to_be_resorted => pt
527	ELSE
528	DO i = nxl, nxr
529	DO j = nys, nyn
530	DO k = nzb_do, nzt_do
531	local_pf(i,j,k) = pt(k,j,i) + l_d_cp * &
532	pt_d_t(k) * &
533	ql(k,j,i)
534	ENDDO
535	ENDDO
536	ENDDO
537	resorted = .TRUE.
538	ENDIF
539	ELSE
540	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
541	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
542	pt_av = REAL( fill_value, KIND = wp )
543	ENDIF
544	to_be_resorted => pt_av
545	ENDIF
546
547	CASE ( 'q' )
548	IF ( av == 0 ) THEN
549	to_be_resorted => q
550	ELSE
551	IF ( .NOT. ALLOCATED( q_av ) ) THEN
552	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
553	q_av = REAL( fill_value, KIND = wp )
554	ENDIF
555	to_be_resorted => q_av
556	ENDIF
557
558	CASE ( 'qc' )
559	IF ( av == 0 ) THEN
560	to_be_resorted => qc
561	ELSE
562	IF ( .NOT. ALLOCATED( qc_av ) ) THEN
563	ALLOCATE( qc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
564	qc_av = REAL( fill_value, KIND = wp )
565	ENDIF
566	to_be_resorted => qc_av
567	ENDIF
568
569	CASE ( 'ql' )
570	IF ( av == 0 ) THEN
571	to_be_resorted => ql
572	ELSE
573	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
574	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
575	ql_av = REAL( fill_value, KIND = wp )
576	ENDIF
577	to_be_resorted => ql_av
578	ENDIF
579
580	CASE ( 'ql_c' )
581	IF ( av == 0 ) THEN
582	to_be_resorted => ql_c
583	ELSE
584	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
585	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
586	ql_c_av = REAL( fill_value, KIND = wp )
587	ENDIF
588	to_be_resorted => ql_c_av
589	ENDIF
590
591	CASE ( 'ql_v' )
592	IF ( av == 0 ) THEN
593	to_be_resorted => ql_v
594	ELSE
595	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
596	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
597	ql_v_av = REAL( fill_value, KIND = wp )
598	ENDIF
599	to_be_resorted => ql_v_av
600	ENDIF
601
602	CASE ( 'ql_vp' )
603	IF ( av == 0 ) THEN
604	IF ( simulated_time >= particle_advection_start ) THEN
605	DO i = nxl, nxr
606	DO j = nys, nyn
607	DO k = nzb_do, nzt_do
608	number_of_particles = prt_count(k,j,i)
609	IF (number_of_particles <= 0) CYCLE
610	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
611	DO n = 1, number_of_particles
612	IF ( particles(n)%particle_mask ) THEN
613	tend(k,j,i) = tend(k,j,i) + &
614	particles(n)%weight_factor / &
615	prt_count(k,j,i)
616	ENDIF
617	ENDDO
618	ENDDO
619	ENDDO
620	ENDDO
621	ELSE
622	tend = 0.0_wp
623	ENDIF
624	DO i = nxl, nxr
625	DO j = nys, nyn
626	DO k = nzb_do, nzt_do
627	local_pf(i,j,k) = tend(k,j,i)
628	ENDDO
629	ENDDO
630	ENDDO
631	resorted = .TRUE.
632	ELSE
633	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
634	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
635	ql_vp_av = REAL( fill_value, KIND = wp )
636	ENDIF
637	to_be_resorted => ql_vp_av
638	ENDIF
639
640	CASE ( 'qr' )
641	IF ( av == 0 ) THEN
642	to_be_resorted => qr
643	ELSE
644	IF ( .NOT. ALLOCATED( qr_av ) ) THEN
645	ALLOCATE( qr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
646	qr_av = REAL( fill_value, KIND = wp )
647	ENDIF
648	to_be_resorted => qr_av
649	ENDIF
650
651	CASE ( 'qv' )
652	IF ( av == 0 ) THEN
653	DO i = nxl, nxr
654	DO j = nys, nyn
655	DO k = nzb_do, nzt_do
656	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
657	ENDDO
658	ENDDO
659	ENDDO
660	resorted = .TRUE.
661	ELSE
662	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
663	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
664	qv_av = REAL( fill_value, KIND = wp )
665	ENDIF
666	to_be_resorted => qv_av
667	ENDIF
668
669	CASE ( 'rho_ocean' )
670	IF ( av == 0 ) THEN
671	to_be_resorted => rho_ocean
672	ELSE
673	IF ( .NOT. ALLOCATED( rho_ocean_av ) ) THEN
674	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
675	u_av = REAL( fill_value, KIND = wp )
676	ENDIF
677	to_be_resorted => rho_ocean_av
678	ENDIF
679
680	CASE ( 's' )
681	IF ( av == 0 ) THEN
682	to_be_resorted => s
683	ELSE
684	IF ( .NOT. ALLOCATED( s_av ) ) THEN
685	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
686	s_av = REAL( fill_value, KIND = wp )
687	ENDIF
688	to_be_resorted => s_av
689	ENDIF
690
691	CASE ( 'sa' )
692	IF ( av == 0 ) THEN
693	to_be_resorted => sa
694	ELSE
695	IF ( .NOT. ALLOCATED( sa_av ) ) THEN
696	ALLOCATE( sa_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
697	sa_av = REAL( fill_value, KIND = wp )
698	ENDIF
699	to_be_resorted => sa_av
700	ENDIF
701
702	CASE ( 'u' )
703	flag_nr = 1
704	IF ( av == 0 ) THEN
705	to_be_resorted => u
706	ELSE
707	IF ( .NOT. ALLOCATED( u_av ) ) THEN
708	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
709	u_av = REAL( fill_value, KIND = wp )
710	ENDIF
711	to_be_resorted => u_av
712	ENDIF
713
714	CASE ( 'v' )
715	flag_nr = 2
716	IF ( av == 0 ) THEN
717	to_be_resorted => v
718	ELSE
719	IF ( .NOT. ALLOCATED( v_av ) ) THEN
720	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
721	v_av = REAL( fill_value, KIND = wp )
722	ENDIF
723	to_be_resorted => v_av
724	ENDIF
725
726	CASE ( 'vpt' )
727	IF ( av == 0 ) THEN
728	to_be_resorted => vpt
729	ELSE
730	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
731	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
732	vpt_av = REAL( fill_value, KIND = wp )
733	ENDIF
734	to_be_resorted => vpt_av
735	ENDIF
736
737	CASE ( 'w' )
738	flag_nr = 3
739	IF ( av == 0 ) THEN
740	to_be_resorted => w
741	ELSE
742	IF ( .NOT. ALLOCATED( w_av ) ) THEN
743	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
744	w_av = REAL( fill_value, KIND = wp )
745	ENDIF
746	to_be_resorted => w_av
747	ENDIF
748	!
749	!-- Block of urban surface model outputs
750	CASE ( 'usm_output' )
751	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
752	nzb_do, nzt_do )
753
754	CASE DEFAULT
755
756	!
757	!-- Land surface quantity
758	IF ( land_surface ) THEN
759	!
760	!-- For soil model quantities, it is required to re-allocate local_pf
761	nzb_do = nzb_soil
762	nzt_do = nzt_soil
763
764	DEALLOCATE ( local_pf )
765	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
766	local_pf = fill_value
767
768	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
769	resorted = .TRUE.
770
771	!
772	!-- If no soil model variable was found, re-allocate local_pf
773	IF ( .NOT. found ) THEN
774	nzb_do = nzb
775	nzt_do = nz_do3d
776
777	DEALLOCATE ( local_pf )
778	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
779	ENDIF
780
781	ENDIF
782
783	IF ( .NOT. found ) THEN
784	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf, &
785	nzb_do, nzt_do )
786	resorted = .TRUE.
787	ENDIF
788
789	!
790	!-- Radiation quantity
791	IF ( .NOT. found .AND. radiation ) THEN
792	CALL radiation_data_output_3d( av, do3d(av,if), found, &
793	local_pf, nzb_do, nzt_do )
794	resorted = .TRUE.
795	ENDIF
796
797	!
798	!-- Gust module quantities
799	IF ( .NOT. found .AND. gust_module_enabled ) THEN
800	CALL gust_data_output_3d( av, do3d(av,if), found, local_pf, &
801	nzb_do, nzt_do )
802	resorted = .TRUE.
803	ENDIF
804
805	!
806	!-- Chemistry model output
807	IF ( .NOT. found .AND. air_chemistry ) THEN
808	CALL chem_data_output_3d( av, do3d(av,if), found, &
809	local_pf, fill_value, nzb_do, nzt_do )
810	resorted = .TRUE.
811	ENDIF
812
813	!
814	!-- Plant canopy model output
815	IF ( .NOT. found .AND. plant_canopy ) THEN
816	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
817	fill_value, nzb_do, nzt_do )
818	resorted = .TRUE.
819	ENDIF
820
821	!
822	!-- User defined quantity
823	IF ( .NOT. found ) THEN
824	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
825	nzb_do, nzt_do )
826	resorted = .TRUE.
827	ENDIF
828
829	IF ( .NOT. found ) THEN
830	message_string = 'no output available for: ' // &
831	TRIM( do3d(av,if) )
832	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
833	ENDIF
834
835	END SELECT
836
837	!
838	!-- Resort the array to be output, if not done above
839	IF ( .NOT. resorted ) THEN
840	DO i = nxl, nxr
841	DO j = nys, nyn
842	DO k = nzb_do, nzt_do
843	local_pf(i,j,k) = MERGE( &
844	to_be_resorted(k,j,i), &
845	REAL( fill_value, KIND = wp ), &
846	BTEST( wall_flags_0(k,j,i), flag_nr ) )
847	ENDDO
848	ENDDO
849	ENDDO
850	ENDIF
851
852	!
853	!-- Output of the 3D-array
854	#if defined( __parallel )
855	IF ( netcdf_data_format < 5 ) THEN
856	!
857	!-- Non-parallel netCDF output. Data is output in parallel in
858	!-- FORTRAN binary format here, and later collected into one file by
859	!-- combine_plot_fields
860	IF ( myid == 0 ) THEN
861	WRITE ( 30 ) time_since_reference_point, &
862	do3d_time_count(av), av
863	ENDIF
864	DO i = 0, io_blocks-1
865	IF ( i == io_group ) THEN
866	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
867	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
868	ENDIF
869
870	CALL MPI_BARRIER( comm2d, ierr )
871
872	ENDDO
873
874	ELSE
875	#if defined( __netcdf )
876	!
877	!-- Parallel output in netCDF4/HDF5 format.
878	! IF ( nxr == nx .AND. nyn /= ny ) THEN
879	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
880	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
881	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
882	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
883	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
884	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
885	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
886	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
887	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
888	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
889	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
890	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
891	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
892	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
893	! ELSE
894	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
895	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
896	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
897	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
898	! ENDIF
899	CALL netcdf_handle_error( 'data_output_3d', 386 )
900	#endif
901	ENDIF
902	#else
903	#if defined( __netcdf )
904	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
905	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
906	start = (/ 1, 1, 1, do3d_time_count(av) /), &
907	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
908	CALL netcdf_handle_error( 'data_output_3d', 446 )
909	#endif
910	#endif
911
912	if = if + 1
913
914	!
915	!-- Deallocate temporary array
916	DEALLOCATE ( local_pf )
917
918	ENDDO
919
920	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
921
922	!
923	!-- Formats.
924	3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ &
925	'label = ',A,A)
926
927	END SUBROUTINE data_output_3d

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