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source: palm/trunk/SOURCE/data_output_3d.f90 @ 3590

Last change on this file since 3590 was 3589, checked in by suehring, 6 years ago
Remove erroneous UTF encoding; last commit documented
Property svn:keywords set to `Id`
File size: 32.7 KB

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[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2718]	17	! Copyright 1997-2018 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[3589]	22	!
	23	!
	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 3589 2018-11-30 15:09:51Z forkel $
[3582]	27	! Move the control parameter "salsa" from salsa_mod to control_parameters
	28	! (M. Kurppa)
	29	!
[3589]	30	! 3582 2018-11-29 19:16:36Z suehring
[3554]	31	! add variable description; rename variable 'if' into 'ivar'
	32	!
	33	! 3525 2018-11-14 16:06:14Z kanani
[3525]	34	! Changes related to clean-up of biometeorology (dom_dwd_user)
	35	!
	36	! 3467 2018-10-30 19:05:21Z suehring
[3467]	37	! Implementation of a new aerosol module salsa.
	38	!
	39	! 3448 2018-10-29 18:14:31Z kanani
[3448]	40	! Adjustment of biometeorology calls
	41	!
	42	! 3421 2018-10-24 18:39:32Z gronemeier
[3421]	43	! Renamed output variables
	44	!
	45	! 3419 2018-10-24 17:27:31Z gronemeier
[3405]	46	! bugfix: nx, ny are required in non-parallel case
	47	!
	48	! 3337 2018-10-12 15:17:09Z kanani
[3337]	49	! (from branch resler)
	50	! Add Biometeorology
	51	!
	52	! 3294 2018-10-01 02:37:10Z raasch
[3294]	53	! changes concerning modularization of ocean option
	54	!
	55	! 3274 2018-09-24 15:42:55Z knoop
[3274]	56	! Modularization of all bulk cloud physics code components
	57	!
	58	! 3241 2018-09-12 15:02:00Z raasch
[3241]	59	! unused variables and format statements removed
	60	!
	61	! 3049 2018-05-29 13:52:36Z Giersch
[3049]	62	! Error messages revised
	63	!
	64	! 3045 2018-05-28 07:55:41Z Giersch
[3045]	65	! Error message revised
	66	!
	67	! 3014 2018-05-09 08:42:38Z maronga
[3014]	68	! Added nzb_do and nzt_do for some modules for 3d output
	69	!
	70	! 3004 2018-04-27 12:33:25Z Giersch
[3004]	71	! Allocation checks implemented (averaged data will be assigned to fill values
	72	! if no allocation happened so far)
	73	!
	74	! 2967 2018-04-13 11:22:08Z raasch
[2967]	75	! bugfix: missing parallel cpp-directives added
	76	!
	77	! 2817 2018-02-19 16:32:21Z knoop
[2817]	78	! Preliminary gust module interface implemented
	79	!
	80	! 2766 2018-01-22 17:17:47Z kanani
[2766]	81	! Removed preprocessor directive __chem
	82	!
	83	! 2756 2018-01-16 18:11:14Z suehring
[2756]	84	! Fill values for 3D output of chemical species introduced.
	85	!
	86	! 2746 2018-01-15 12:06:04Z suehring
[2746]	87	! Move flag plant canopy to modules
	88	!
	89	! 2718 2018-01-02 08:49:38Z maronga
[2716]	90	! Corrected "Former revisions" section
	91	!
	92	! 2696 2017-12-14 17:12:51Z kanani
	93	! Change in file header (GPL part)
[2696]	94	! Implementation of turbulence_closure_mod (TG)
	95	! Implementation of chemistry module (FK)
	96	! Set fill values at topography grid points or e.g. non-natural-type surface
	97	! in case of LSM output (MS)
	98	!
	99	! 2512 2017-10-04 08:26:59Z raasch
[2512]	100	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
	101	! no output of ghost layer data
	102	!
	103	! 2292 2017-06-20 09:51:42Z schwenkel
[2292]	104	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	105	! includes two more prognostic equations for cloud drop concentration (nc)
	106	! and cloud water content (qc).
	107	!
	108	! 2233 2017-05-30 18:08:54Z suehring
[1552]	109	!
[2233]	110	! 2232 2017-05-30 17:47:52Z suehring
	111	! Adjustments to new topography concept
	112	!
[2210]	113	! 2209 2017-04-19 09:34:46Z kanani
	114	! Added plant canopy model output
	115	!
[2032]	116	! 2031 2016-10-21 15:11:58Z knoop
	117	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	118	!
[2012]	119	! 2011 2016-09-19 17:29:57Z kanani
	120	! Flag urban_surface is now defined in module control_parameters,
	121	! changed prefix for urban surface model output to "usm_",
	122	! introduced control parameter varnamelength for LEN of trimvar.
	123	!
[2008]	124	! 2007 2016-08-24 15:47:17Z kanani
	125	! Added support for new urban surface model (temporary modifications of
	126	! SELECT CASE ( ) necessary, see variable trimvar)
	127	!
[2001]	128	! 2000 2016-08-20 18:09:15Z knoop
	129	! Forced header and separation lines into 80 columns
	130	!
[1981]	131	! 1980 2016-07-29 15:51:57Z suehring
	132	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	133	! to .F.
	134	!
[1977]	135	! 1976 2016-07-27 13:28:04Z maronga
	136	! Output of radiation quantities is now done directly in the respective module
	137	!
[1973]	138	! 1972 2016-07-26 07:52:02Z maronga
	139	! Output of land surface quantities is now done directly in the respective module.
	140	! Unnecessary directive __parallel removed.
	141	!
[1961]	142	! 1960 2016-07-12 16:34:24Z suehring
	143	! Scalar surface flux added
	144	!
[1851]	145	! 1849 2016-04-08 11:33:18Z hoffmann
	146	! prr moved to arrays_3d
	147	!
[1823]	148	! 1822 2016-04-07 07:49:42Z hoffmann
	149	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	150	!
[1809]	151	! 1808 2016-04-05 19:44:00Z raasch
	152	! test output removed
	153	!
[1784]	154	! 1783 2016-03-06 18:36:17Z raasch
	155	! name change of netcdf routines and module + related changes
	156	!
[1746]	157	! 1745 2016-02-05 13:06:51Z gronemeier
	158	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	159	!
[1692]	160	! 1691 2015-10-26 16:17:44Z maronga
	161	! Added output of radiative heating rates for RRTMG
	162	!
[1683]	163	! 1682 2015-10-07 23:56:08Z knoop
	164	! Code annotations made doxygen readable
	165	!
[1586]	166	! 1585 2015-04-30 07:05:52Z maronga
	167	! Added support for RRTMG
	168	!
[1552]	169	! 1551 2015-03-03 14:18:16Z maronga
[1551]	170	! Added suppport for land surface model and radiation model output. In the course
	171	! of this action, the limits for vertical loops have been changed (from nzb and
	172	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	173	! Moreover, a new vertical grid zs was introduced.
[1329]	174	!
[1360]	175	! 1359 2014-04-11 17:15:14Z hoffmann
	176	! New particle structure integrated.
	177	!
[1354]	178	! 1353 2014-04-08 15:21:23Z heinze
	179	! REAL constants provided with KIND-attribute
	180	!
[1329]	181	! 1327 2014-03-21 11:00:16Z raasch
	182	! parts concerning avs output removed,
	183	! -netcdf output queries
	184	!
[1321]	185	! 1320 2014-03-20 08:40:49Z raasch
[1320]	186	! ONLY-attribute added to USE-statements,
	187	! kind-parameters added to all INTEGER and REAL declaration statements,
	188	! kinds are defined in new module kinds,
	189	! old module precision_kind is removed,
	190	! revision history before 2012 removed,
	191	! comment fields (!:) to be used for variable explanations added to
	192	! all variable declaration statements
[674]	193	!
[1319]	194	! 1318 2014-03-17 13:35:16Z raasch
	195	! barrier argument removed from cpu_log,
	196	! module interfaces removed
	197	!
[1309]	198	! 1308 2014-03-13 14:58:42Z fricke
	199	! Check, if the limit of the time dimension is exceeded for parallel output
	200	! To increase the performance for parallel output, the following is done:
	201	! - Update of time axis is only done by PE0
	202	!
[1245]	203	! 1244 2013-10-31 08:16:56Z raasch
	204	! Bugfix for index bounds in case of 3d-parallel output
	205	!
[1116]	206	! 1115 2013-03-26 18:16:16Z hoffmann
	207	! ql is calculated by calc_liquid_water_content
	208	!
[1107]	209	! 1106 2013-03-04 05:31:38Z raasch
	210	! array_kind renamed precision_kind
	211	!
[1077]	212	! 1076 2012-12-05 08:30:18Z hoffmann
	213	! Bugfix in output of ql
	214	!
[1054]	215	! 1053 2012-11-13 17:11:03Z hoffmann
	216	! +nr, qr, prr, qc and averaged quantities
	217	!
[1037]	218	! 1036 2012-10-22 13:43:42Z raasch
	219	! code put under GPL (PALM 3.9)
	220	!
[1035]	221	! 1031 2012-10-19 14:35:30Z raasch
	222	! netCDF4 without parallel file support implemented
	223	!
[1008]	224	! 1007 2012-09-19 14:30:36Z franke
	225	! Bugfix: missing calculation of ql_vp added
	226	!
[1]	227	! Revision 1.1 1997/09/03 06:29:36 raasch
	228	! Initial revision
	229	!
	230	!
	231	! Description:
	232	! ------------
[1682]	233	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	234	!------------------------------------------------------------------------------!
[1682]	235	SUBROUTINE data_output_3d( av )
	236
[1]	237
[1320]	238	USE arrays_3d, &
[3294]	239	ONLY: d_exner, e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, s, &
	240	tend, u, v, vpt, w
[3274]	241
[1]	242	USE averaging
[3274]	243
	244	USE basic_constants_and_equations_mod, &
	245	ONLY: lv_d_cp
	246
[3448]	247	USE biometeorology_mod, &
[3525]	248	ONLY: bio_data_output_3d
[3448]	249
[3274]	250	USE bulk_cloud_model_mod, &
	251	ONLY: bulk_cloud_model, bcm_data_output_3d
	252
[2696]	253	USE chemistry_model_mod, &
	254	ONLY: chem_data_output_3d
	255
[1320]	256	USE control_parameters, &
[3448]	257	ONLY: air_chemistry, biometeorology, do3d, do3d_no, do3d_time_count, &
[2696]	258	io_blocks, io_group, land_surface, message_string, &
[3294]	259	ntdim_3d, nz_do3d, ocean_mode, plant_canopy, &
[3582]	260	psolver, salsa, simulated_time, time_since_reference_point, &
[2232]	261	urban_surface, varnamelength
[3274]	262
[1320]	263	USE cpulog, &
	264	ONLY: log_point, cpu_log
[2817]	265
	266	USE gust_mod, &
	267	ONLY: gust_data_output_3d, gust_module_enabled
[3274]	268
[3405]	269	#if defined( __parallel )
[1320]	270	USE indices, &
[3241]	271	ONLY: nbgp, nxl, nxlg, nxr, nxrg, nyn, nyng, nys, nysg, nzb, nzt, &
	272	wall_flags_0
[3405]	273	#else
	274	USE indices, &
	275	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
	276	nzt, wall_flags_0
	277	#endif
[3274]	278
[1320]	279	USE kinds
[3274]	280
[1551]	281	USE land_surface_model_mod, &
[2232]	282	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	283
[1783]	284	#if defined( __netcdf )
	285	USE NETCDF
	286	#endif
	287
	288	USE netcdf_interface, &
[2696]	289	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
[1783]	290	netcdf_data_format, netcdf_handle_error
[1320]	291
[3294]	292	USE ocean_mod, &
	293	ONLY: ocean_data_output_3d
	294
[1320]	295	USE particle_attributes, &
[1359]	296	ONLY: grid_particles, number_of_particles, particles, &
	297	particle_advection_start, prt_count
[1320]	298
[1]	299	USE pegrid
	300
[2209]	301	USE plant_canopy_model_mod, &
[2746]	302	ONLY: pcm_data_output_3d
[2209]	303
[1585]	304	USE radiation_model_mod, &
[2696]	305	ONLY: nzub, nzut, radiation, radiation_data_output_3d
[3467]	306
	307	USE salsa_mod, &
[3582]	308	ONLY: salsa_data_output_3d
[1585]	309
[2696]	310	USE turbulence_closure_mod, &
	311	ONLY: tcm_data_output_3d
	312
[2007]	313	USE urban_surface_mod, &
[2696]	314	ONLY: usm_data_output_3d
[1585]	315
[2007]	316
[1]	317	IMPLICIT NONE
	318
[3554]	319	INTEGER(iwp) :: av !< flag for (non-)average output
[2696]	320	INTEGER(iwp) :: flag_nr !< number of masking flag
[3554]	321	INTEGER(iwp) :: i !< loop index
	322	INTEGER(iwp) :: ivar !< variable index
	323	INTEGER(iwp) :: j !< loop index
	324	INTEGER(iwp) :: k !< loop index
	325	INTEGER(iwp) :: n !< loop index
[1682]	326	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	327	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	328
[3554]	329	LOGICAL :: found !< true if output variable was found
	330	LOGICAL :: resorted !< true if variable is resorted
[1]	331
[3554]	332	REAL(wp) :: mean_r !< mean particle radius
	333	REAL(wp) :: s_r2 !< sum( particle-radius**2 )
	334	REAL(wp) :: s_r3 !< sum( particle-radius**3 )
[1]	335
[3554]	336	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !< output array
[1]	337
[3554]	338	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !< pointer to array which shall be output
[1]	339
[2011]	340	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	341
[1]	342	!
	343	!-- Return, if nothing to output
	344	IF ( do3d_no(av) == 0 ) RETURN
	345
	346	CALL cpu_log (log_point(14),'data_output_3d','start')
	347
	348	!
	349	!-- Open output file.
[2512]	350	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
	351	!-- own file and writes the data of its subdomain in binary format. After the
	352	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
[1031]	353	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	354	IF ( netcdf_data_format < 5 ) THEN
[2967]	355	#if defined( __parallel )
[1327]	356	CALL check_open( 30 )
[2967]	357	#endif
[1327]	358	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	359	ELSE
[1327]	360	CALL check_open( 106+av*10 )
[493]	361	ENDIF
[1]	362
	363	!
[1745]	364	!-- For parallel netcdf output the time axis must be limited. Return, if this
	365	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	366	!-- the given end time by the length of the given output interval.
	367	IF ( netcdf_data_format > 4 ) THEN
	368	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
	369	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
[3046]	370	simulated_time, '&because the maximum ', &
[1745]	371	'number of output time levels is ', &
	372	'exceeded.'
	373	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	374	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	375	RETURN
	376	ENDIF
	377	ENDIF
	378
	379	!
[1031]	380	!-- Update the netCDF time axis
[1308]	381	!-- In case of parallel output, this is only done by PE0 to increase the
	382	!-- performance.
[1]	383	#if defined( __netcdf )
[1308]	384	do3d_time_count(av) = do3d_time_count(av) + 1
	385	IF ( myid == 0 ) THEN
[1327]	386	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	387	(/ time_since_reference_point /), &
	388	start = (/ do3d_time_count(av) /), &
	389	count = (/ 1 /) )
[1783]	390	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	391	ENDIF
	392	#endif
	393
	394	!
	395	!-- Loop over all variables to be written.
[3554]	396	ivar = 1
[1]	397
[3554]	398	DO WHILE ( do3d(av,ivar)(1:1) /= ' ' )
[2007]	399
[1]	400	!
[2007]	401	!-- Temporary solution to account for data output within the new urban
	402	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	403	!-- Store the array chosen on the temporary array.
[3554]	404	trimvar = TRIM( do3d(av,ivar) )
[2011]	405	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
[2007]	406	trimvar = 'usm_output'
	407	resorted = .TRUE.
	408	nzb_do = nzub
	409	nzt_do = nzut
	410	ELSE
	411	resorted = .FALSE.
	412	nzb_do = nzb
	413	nzt_do = nz_do3d
	414	ENDIF
[1551]	415	!
[1980]	416	!-- Set flag to steer output of radiation, land-surface, or user-defined
	417	!-- quantities
	418	found = .FALSE.
	419	!
[1551]	420	!-- Allocate a temporary array with the desired output dimensions.
[2512]	421	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	422	!
	423	!-- Before each output, set array local_pf to fill value
	424	local_pf = fill_value
	425	!
	426	!-- Set masking flag for topography for not resorted arrays
	427	flag_nr = 0
[1551]	428
[2007]	429	SELECT CASE ( trimvar )
[1]	430
	431	CASE ( 'e' )
	432	IF ( av == 0 ) THEN
	433	to_be_resorted => e
	434	ELSE
[3004]	435	IF ( .NOT. ALLOCATED( e_av ) ) THEN
	436	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	437	e_av = REAL( fill_value, KIND = wp )
	438	ENDIF
[1]	439	to_be_resorted => e_av
	440	ENDIF
	441
[3421]	442	CASE ( 'thetal' )
[771]	443	IF ( av == 0 ) THEN
	444	to_be_resorted => pt
	445	ELSE
[3004]	446	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
	447	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	448	lpt_av = REAL( fill_value, KIND = wp )
	449	ENDIF
[771]	450	to_be_resorted => lpt_av
	451	ENDIF
	452
[1]	453	CASE ( 'p' )
	454	IF ( av == 0 ) THEN
[727]	455	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	456	to_be_resorted => p
	457	ELSE
[3004]	458	IF ( .NOT. ALLOCATED( p_av ) ) THEN
	459	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	460	p_av = REAL( fill_value, KIND = wp )
	461	ENDIF
[727]	462	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	463	to_be_resorted => p_av
	464	ENDIF
	465
	466	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	467	IF ( av == 0 ) THEN
[1359]	468	IF ( simulated_time >= particle_advection_start ) THEN
	469	tend = prt_count
	470	ELSE
	471	tend = 0.0_wp
	472	ENDIF
[2512]	473	DO i = nxl, nxr
	474	DO j = nys, nyn
[1551]	475	DO k = nzb_do, nzt_do
[1]	476	local_pf(i,j,k) = tend(k,j,i)
	477	ENDDO
	478	ENDDO
	479	ENDDO
	480	resorted = .TRUE.
	481	ELSE
[3004]	482	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
	483	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	484	pc_av = REAL( fill_value, KIND = wp )
	485	ENDIF
[1]	486	to_be_resorted => pc_av
	487	ENDIF
	488
[1359]	489	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	490	IF ( av == 0 ) THEN
[1359]	491	IF ( simulated_time >= particle_advection_start ) THEN
	492	DO i = nxl, nxr
	493	DO j = nys, nyn
[1551]	494	DO k = nzb_do, nzt_do
[1359]	495	number_of_particles = prt_count(k,j,i)
	496	IF (number_of_particles <= 0) CYCLE
	497	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	498	s_r2 = 0.0_wp
	499	s_r3 = 0.0_wp
	500	DO n = 1, number_of_particles
	501	IF ( particles(n)%particle_mask ) THEN
	502	s_r2 = s_r2 + particles(n)%radius*2 &
	503	particles(n)%weight_factor
	504	s_r3 = s_r3 + particles(n)%radius*3 &
	505	particles(n)%weight_factor
	506	ENDIF
	507	ENDDO
	508	IF ( s_r2 > 0.0_wp ) THEN
	509	mean_r = s_r3 / s_r2
	510	ELSE
	511	mean_r = 0.0_wp
	512	ENDIF
	513	tend(k,j,i) = mean_r
[1]	514	ENDDO
	515	ENDDO
	516	ENDDO
[1359]	517	ELSE
	518	tend = 0.0_wp
	519	ENDIF
[2512]	520	DO i = nxl, nxr
	521	DO j = nys, nyn
[1551]	522	DO k = nzb_do, nzt_do
[1]	523	local_pf(i,j,k) = tend(k,j,i)
	524	ENDDO
	525	ENDDO
	526	ENDDO
	527	resorted = .TRUE.
	528	ELSE
[3004]	529	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
	530	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	531	pr_av = REAL( fill_value, KIND = wp )
	532	ENDIF
[1]	533	to_be_resorted => pr_av
	534	ENDIF
	535
[3421]	536	CASE ( 'theta' )
[1]	537	IF ( av == 0 ) THEN
[3274]	538	IF ( .NOT. bulk_cloud_model ) THEN
[1]	539	to_be_resorted => pt
	540	ELSE
[2512]	541	DO i = nxl, nxr
	542	DO j = nys, nyn
[1551]	543	DO k = nzb_do, nzt_do
[3274]	544	local_pf(i,j,k) = pt(k,j,i) + lv_d_cp * &
	545	d_exner(k) * &
[1]	546	ql(k,j,i)
	547	ENDDO
	548	ENDDO
	549	ENDDO
	550	resorted = .TRUE.
	551	ENDIF
	552	ELSE
[3004]	553	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
	554	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	555	pt_av = REAL( fill_value, KIND = wp )
	556	ENDIF
[1]	557	to_be_resorted => pt_av
	558	ENDIF
	559
	560	CASE ( 'q' )
	561	IF ( av == 0 ) THEN
	562	to_be_resorted => q
	563	ELSE
[3004]	564	IF ( .NOT. ALLOCATED( q_av ) ) THEN
	565	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	566	q_av = REAL( fill_value, KIND = wp )
	567	ENDIF
[1]	568	to_be_resorted => q_av
	569	ENDIF
[691]	570
[1053]	571	CASE ( 'ql' )
	572	IF ( av == 0 ) THEN
[1115]	573	to_be_resorted => ql
[1053]	574	ELSE
[3004]	575	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
	576	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	577	ql_av = REAL( fill_value, KIND = wp )
	578	ENDIF
[1115]	579	to_be_resorted => ql_av
[1053]	580	ENDIF
	581
[1]	582	CASE ( 'ql_c' )
	583	IF ( av == 0 ) THEN
	584	to_be_resorted => ql_c
	585	ELSE
[3004]	586	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
	587	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	588	ql_c_av = REAL( fill_value, KIND = wp )
	589	ENDIF
[1]	590	to_be_resorted => ql_c_av
	591	ENDIF
	592
	593	CASE ( 'ql_v' )
	594	IF ( av == 0 ) THEN
	595	to_be_resorted => ql_v
	596	ELSE
[3004]	597	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
	598	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	599	ql_v_av = REAL( fill_value, KIND = wp )
	600	ENDIF
[1]	601	to_be_resorted => ql_v_av
	602	ENDIF
	603
	604	CASE ( 'ql_vp' )
	605	IF ( av == 0 ) THEN
[1359]	606	IF ( simulated_time >= particle_advection_start ) THEN
	607	DO i = nxl, nxr
	608	DO j = nys, nyn
[1551]	609	DO k = nzb_do, nzt_do
[1359]	610	number_of_particles = prt_count(k,j,i)
	611	IF (number_of_particles <= 0) CYCLE
	612	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	613	DO n = 1, number_of_particles
	614	IF ( particles(n)%particle_mask ) THEN
	615	tend(k,j,i) = tend(k,j,i) + &
	616	particles(n)%weight_factor / &
	617	prt_count(k,j,i)
	618	ENDIF
	619	ENDDO
[1007]	620	ENDDO
	621	ENDDO
	622	ENDDO
[1359]	623	ELSE
	624	tend = 0.0_wp
	625	ENDIF
[2512]	626	DO i = nxl, nxr
	627	DO j = nys, nyn
[1551]	628	DO k = nzb_do, nzt_do
[1007]	629	local_pf(i,j,k) = tend(k,j,i)
	630	ENDDO
	631	ENDDO
	632	ENDDO
	633	resorted = .TRUE.
[1]	634	ELSE
[3004]	635	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
	636	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	637	ql_vp_av = REAL( fill_value, KIND = wp )
	638	ENDIF
[1]	639	to_be_resorted => ql_vp_av
	640	ENDIF
	641
	642	CASE ( 'qv' )
	643	IF ( av == 0 ) THEN
[2512]	644	DO i = nxl, nxr
	645	DO j = nys, nyn
[1551]	646	DO k = nzb_do, nzt_do
[1]	647	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	648	ENDDO
	649	ENDDO
	650	ENDDO
	651	resorted = .TRUE.
	652	ELSE
[3004]	653	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
	654	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	655	qv_av = REAL( fill_value, KIND = wp )
	656	ENDIF
[1]	657	to_be_resorted => qv_av
	658	ENDIF
	659
	660	CASE ( 's' )
	661	IF ( av == 0 ) THEN
[1960]	662	to_be_resorted => s
[1]	663	ELSE
[3004]	664	IF ( .NOT. ALLOCATED( s_av ) ) THEN
	665	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	666	s_av = REAL( fill_value, KIND = wp )
	667	ENDIF
[355]	668	to_be_resorted => s_av
[1]	669	ENDIF
[691]	670
[1]	671	CASE ( 'u' )
[2696]	672	flag_nr = 1
[1]	673	IF ( av == 0 ) THEN
	674	to_be_resorted => u
	675	ELSE
[3004]	676	IF ( .NOT. ALLOCATED( u_av ) ) THEN
	677	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	678	u_av = REAL( fill_value, KIND = wp )
	679	ENDIF
[1]	680	to_be_resorted => u_av
	681	ENDIF
	682
	683	CASE ( 'v' )
[2696]	684	flag_nr = 2
[1]	685	IF ( av == 0 ) THEN
	686	to_be_resorted => v
	687	ELSE
[3004]	688	IF ( .NOT. ALLOCATED( v_av ) ) THEN
	689	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	690	v_av = REAL( fill_value, KIND = wp )
	691	ENDIF
[1]	692	to_be_resorted => v_av
	693	ENDIF
	694
[3421]	695	CASE ( 'thetav' )
[1]	696	IF ( av == 0 ) THEN
	697	to_be_resorted => vpt
	698	ELSE
[3004]	699	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
	700	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	701	vpt_av = REAL( fill_value, KIND = wp )
	702	ENDIF
[1]	703	to_be_resorted => vpt_av
	704	ENDIF
	705
	706	CASE ( 'w' )
[2696]	707	flag_nr = 3
[1]	708	IF ( av == 0 ) THEN
	709	to_be_resorted => w
	710	ELSE
[3004]	711	IF ( .NOT. ALLOCATED( w_av ) ) THEN
	712	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	713	w_av = REAL( fill_value, KIND = wp )
	714	ENDIF
[1]	715	to_be_resorted => w_av
	716	ENDIF
[2007]	717	!
	718	!-- Block of urban surface model outputs
	719	CASE ( 'usm_output' )
[3554]	720	CALL usm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[2007]	721	nzb_do, nzt_do )
[1]	722
	723	CASE DEFAULT
[1972]	724
[1]	725	!
[3294]	726	!-- Quantities of other modules
[3274]	727	IF ( .NOT. found .AND. bulk_cloud_model ) THEN
[3554]	728	CALL bcm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[3274]	729	nzb_do, nzt_do )
	730	resorted = .TRUE.
	731	ENDIF
	732
[3294]	733	IF ( .NOT. found .AND. air_chemistry ) THEN
[3554]	734	CALL chem_data_output_3d( av, do3d(av,ivar), found, &
[3294]	735	local_pf, fill_value, nzb_do, nzt_do )
	736	resorted = .TRUE.
	737	ENDIF
	738
	739	IF ( .NOT. found .AND. gust_module_enabled ) THEN
[3554]	740	CALL gust_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[3294]	741	nzb_do, nzt_do )
	742	resorted = .TRUE.
	743	ENDIF
	744
[3274]	745	IF ( .NOT. found .AND. land_surface ) THEN
[1972]	746	!
	747	!-- For soil model quantities, it is required to re-allocate local_pf
	748	nzb_do = nzb_soil
	749	nzt_do = nzt_soil
	750
	751	DEALLOCATE ( local_pf )
[2512]	752	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	753	local_pf = fill_value
[1972]	754
[3554]	755	CALL lsm_data_output_3d( av, do3d(av,ivar), found, local_pf )
[1972]	756	resorted = .TRUE.
[1976]	757
	758	!
	759	!-- If no soil model variable was found, re-allocate local_pf
	760	IF ( .NOT. found ) THEN
	761	nzb_do = nzb
	762	nzt_do = nz_do3d
	763
	764	DEALLOCATE ( local_pf )
[2512]	765	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	766	ENDIF
	767
[1972]	768	ENDIF
	769
[3294]	770	IF ( .NOT. found .AND. ocean_mode ) THEN
[3554]	771	CALL ocean_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[3294]	772	nzb_do, nzt_do )
[1976]	773	resorted = .TRUE.
	774	ENDIF
	775
[3294]	776	IF ( .NOT. found .AND. plant_canopy ) THEN
[3554]	777	CALL pcm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[3294]	778	fill_value, nzb_do, nzt_do )
[2817]	779	resorted = .TRUE.
	780	ENDIF
	781
[3294]	782	IF ( .NOT. found .AND. radiation ) THEN
[3554]	783	CALL radiation_data_output_3d( av, do3d(av,ivar), found, &
[3294]	784	local_pf, nzb_do, nzt_do )
[2696]	785	resorted = .TRUE.
	786	ENDIF
	787
[3294]	788	IF ( .NOT. found ) THEN
[3554]	789	CALL tcm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[3294]	790	nzb_do, nzt_do )
[2209]	791	resorted = .TRUE.
	792	ENDIF
[3467]	793
	794	!
	795	!-- SALSA output
	796	IF ( .NOT. found .AND. salsa ) THEN
[3582]	797	CALL salsa_data_output_3d( av, do3d(av,ivar), found, local_pf, &
	798	nzb_do, nzt_do )
[3467]	799	resorted = .TRUE.
	800	ENDIF
[2209]	801
[3448]	802	IF ( .NOT. found .AND. biometeorology ) THEN
[3554]	803	CALL bio_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[3525]	804	nzb_do, nzt_do )
[3448]	805	ENDIF
	806
[2209]	807	!
[3294]	808	!-- User defined quantities
[1972]	809	IF ( .NOT. found ) THEN
[3554]	810	CALL user_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[1972]	811	nzb_do, nzt_do )
	812	resorted = .TRUE.
	813	ENDIF
[1]	814
[254]	815	IF ( .NOT. found ) THEN
[1320]	816	message_string = 'no output available for: ' // &
[3554]	817	TRIM( do3d(av,ivar) )
[254]	818	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	819	ENDIF
	820
	821	END SELECT
	822
	823	!
	824	!-- Resort the array to be output, if not done above
	825	IF ( .NOT. resorted ) THEN
[2512]	826	DO i = nxl, nxr
	827	DO j = nys, nyn
[1551]	828	DO k = nzb_do, nzt_do
[2696]	829	local_pf(i,j,k) = MERGE( &
	830	to_be_resorted(k,j,i), &
	831	REAL( fill_value, KIND = wp ), &
	832	BTEST( wall_flags_0(k,j,i), flag_nr ) )
[1]	833	ENDDO
	834	ENDDO
	835	ENDDO
	836	ENDIF
	837
	838	!
[1327]	839	!-- Output of the 3D-array
	840	#if defined( __parallel )
	841	IF ( netcdf_data_format < 5 ) THEN
[1]	842	!
[1327]	843	!-- Non-parallel netCDF output. Data is output in parallel in
	844	!-- FORTRAN binary format here, and later collected into one file by
	845	!-- combine_plot_fields
	846	IF ( myid == 0 ) THEN
	847	WRITE ( 30 ) time_since_reference_point, &
	848	do3d_time_count(av), av
[1]	849	ENDIF
[1327]	850	DO i = 0, io_blocks-1
	851	IF ( i == io_group ) THEN
[2512]	852	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[1551]	853	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	854	ENDIF
[1972]	855
[1327]	856	CALL MPI_BARRIER( comm2d, ierr )
[1972]	857
[1327]	858	ENDDO
[559]	859
[1327]	860	ELSE
[646]	861	#if defined( __netcdf )
[493]	862	!
[1327]	863	!-- Parallel output in netCDF4/HDF5 format.
[2512]	864	! IF ( nxr == nx .AND. nyn /= ny ) THEN
[3554]	865	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[2512]	866	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	867	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	868	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	869	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
[3554]	870	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[2512]	871	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	872	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	873	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	874	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
[3554]	875	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[2512]	876	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	877	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	878	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	879	! ELSE
[3554]	880	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[1551]	881	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	882	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	883	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[2512]	884	! ENDIF
[1783]	885	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	886	#endif
[1327]	887	ENDIF
[1]	888	#else
	889	#if defined( __netcdf )
[3554]	890	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[1551]	891	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	892	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[2512]	893	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	894	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	895	#endif
	896	#endif
	897
[3554]	898	ivar = ivar + 1
[1]	899
	900	!
[1551]	901	!-- Deallocate temporary array
	902	DEALLOCATE ( local_pf )
[1]	903
[1551]	904	ENDDO
[1]	905
[1318]	906	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	907
	908	END SUBROUTINE data_output_3d

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