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source: palm/trunk/SOURCE/data_output_3d.f90 @ 3573

Last change on this file since 3573 was 3554, checked in by gronemeier, 6 years ago
renamed variable if to ivar; add variable description
Property svn:keywords set to `Id`
File size: 32.5 KB

Rev	Line
[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2718]	17	! Copyright 1997-2018 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[1961]	22	!
[3049]	23	!
[1552]	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 3554 2018-11-22 11:24:52Z raasch $
[3554]	27	! add variable description; rename variable 'if' into 'ivar'
	28	!
	29	! 3525 2018-11-14 16:06:14Z kanani
[3525]	30	! Changes related to clean-up of biometeorology (dom_dwd_user)
	31	!
	32	! 3467 2018-10-30 19:05:21Z suehring
[3467]	33	! Implementation of a new aerosol module salsa.
	34	!
	35	! 3448 2018-10-29 18:14:31Z kanani
[3448]	36	! Adjustment of biometeorology calls
	37	!
	38	! 3421 2018-10-24 18:39:32Z gronemeier
[3421]	39	! Renamed output variables
	40	!
	41	! 3419 2018-10-24 17:27:31Z gronemeier
[3405]	42	! bugfix: nx, ny are required in non-parallel case
	43	!
	44	! 3337 2018-10-12 15:17:09Z kanani
[3337]	45	! (from branch resler)
	46	! Add Biometeorology
	47	!
	48	! 3294 2018-10-01 02:37:10Z raasch
[3294]	49	! changes concerning modularization of ocean option
	50	!
	51	! 3274 2018-09-24 15:42:55Z knoop
[3274]	52	! Modularization of all bulk cloud physics code components
	53	!
	54	! 3241 2018-09-12 15:02:00Z raasch
[3241]	55	! unused variables and format statements removed
	56	!
	57	! 3049 2018-05-29 13:52:36Z Giersch
[3049]	58	! Error messages revised
	59	!
	60	! 3045 2018-05-28 07:55:41Z Giersch
[3045]	61	! Error message revised
	62	!
	63	! 3014 2018-05-09 08:42:38Z maronga
[3014]	64	! Added nzb_do and nzt_do for some modules for 3d output
	65	!
	66	! 3004 2018-04-27 12:33:25Z Giersch
[3004]	67	! Allocation checks implemented (averaged data will be assigned to fill values
	68	! if no allocation happened so far)
	69	!
	70	! 2967 2018-04-13 11:22:08Z raasch
[2967]	71	! bugfix: missing parallel cpp-directives added
	72	!
	73	! 2817 2018-02-19 16:32:21Z knoop
[2817]	74	! Preliminary gust module interface implemented
	75	!
	76	! 2766 2018-01-22 17:17:47Z kanani
[2766]	77	! Removed preprocessor directive __chem
	78	!
	79	! 2756 2018-01-16 18:11:14Z suehring
[2756]	80	! Fill values for 3D output of chemical species introduced.
	81	!
	82	! 2746 2018-01-15 12:06:04Z suehring
[2746]	83	! Move flag plant canopy to modules
	84	!
	85	! 2718 2018-01-02 08:49:38Z maronga
[2716]	86	! Corrected "Former revisions" section
	87	!
	88	! 2696 2017-12-14 17:12:51Z kanani
	89	! Change in file header (GPL part)
[2696]	90	! Implementation of turbulence_closure_mod (TG)
	91	! Implementation of chemistry module (FK)
	92	! Set fill values at topography grid points or e.g. non-natural-type surface
	93	! in case of LSM output (MS)
	94	!
	95	! 2512 2017-10-04 08:26:59Z raasch
[2512]	96	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
	97	! no output of ghost layer data
	98	!
	99	! 2292 2017-06-20 09:51:42Z schwenkel
[2292]	100	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	101	! includes two more prognostic equations for cloud drop concentration (nc)
	102	! and cloud water content (qc).
	103	!
	104	! 2233 2017-05-30 18:08:54Z suehring
[1552]	105	!
[2233]	106	! 2232 2017-05-30 17:47:52Z suehring
	107	! Adjustments to new topography concept
	108	!
[2210]	109	! 2209 2017-04-19 09:34:46Z kanani
	110	! Added plant canopy model output
	111	!
[2032]	112	! 2031 2016-10-21 15:11:58Z knoop
	113	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	114	!
[2012]	115	! 2011 2016-09-19 17:29:57Z kanani
	116	! Flag urban_surface is now defined in module control_parameters,
	117	! changed prefix for urban surface model output to "usm_",
	118	! introduced control parameter varnamelength for LEN of trimvar.
	119	!
[2008]	120	! 2007 2016-08-24 15:47:17Z kanani
	121	! Added support for new urban surface model (temporary modifications of
	122	! SELECT CASE ( ) necessary, see variable trimvar)
	123	!
[2001]	124	! 2000 2016-08-20 18:09:15Z knoop
	125	! Forced header and separation lines into 80 columns
	126	!
[1981]	127	! 1980 2016-07-29 15:51:57Z suehring
	128	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	129	! to .F.
	130	!
[1977]	131	! 1976 2016-07-27 13:28:04Z maronga
	132	! Output of radiation quantities is now done directly in the respective module
	133	!
[1973]	134	! 1972 2016-07-26 07:52:02Z maronga
	135	! Output of land surface quantities is now done directly in the respective module.
	136	! Unnecessary directive __parallel removed.
	137	!
[1961]	138	! 1960 2016-07-12 16:34:24Z suehring
	139	! Scalar surface flux added
	140	!
[1851]	141	! 1849 2016-04-08 11:33:18Z hoffmann
	142	! prr moved to arrays_3d
	143	!
[1823]	144	! 1822 2016-04-07 07:49:42Z hoffmann
	145	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	146	!
[1809]	147	! 1808 2016-04-05 19:44:00Z raasch
	148	! test output removed
	149	!
[1784]	150	! 1783 2016-03-06 18:36:17Z raasch
	151	! name change of netcdf routines and module + related changes
	152	!
[1746]	153	! 1745 2016-02-05 13:06:51Z gronemeier
	154	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	155	!
[1692]	156	! 1691 2015-10-26 16:17:44Z maronga
	157	! Added output of radiative heating rates for RRTMG
	158	!
[1683]	159	! 1682 2015-10-07 23:56:08Z knoop
	160	! Code annotations made doxygen readable
	161	!
[1586]	162	! 1585 2015-04-30 07:05:52Z maronga
	163	! Added support for RRTMG
	164	!
[1552]	165	! 1551 2015-03-03 14:18:16Z maronga
[1551]	166	! Added suppport for land surface model and radiation model output. In the course
	167	! of this action, the limits for vertical loops have been changed (from nzb and
	168	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	169	! Moreover, a new vertical grid zs was introduced.
[1329]	170	!
[1360]	171	! 1359 2014-04-11 17:15:14Z hoffmann
	172	! New particle structure integrated.
	173	!
[1354]	174	! 1353 2014-04-08 15:21:23Z heinze
	175	! REAL constants provided with KIND-attribute
	176	!
[1329]	177	! 1327 2014-03-21 11:00:16Z raasch
	178	! parts concerning avs output removed,
	179	! -netcdf output queries
	180	!
[1321]	181	! 1320 2014-03-20 08:40:49Z raasch
[1320]	182	! ONLY-attribute added to USE-statements,
	183	! kind-parameters added to all INTEGER and REAL declaration statements,
	184	! kinds are defined in new module kinds,
	185	! old module precision_kind is removed,
	186	! revision history before 2012 removed,
	187	! comment fields (!:) to be used for variable explanations added to
	188	! all variable declaration statements
[674]	189	!
[1319]	190	! 1318 2014-03-17 13:35:16Z raasch
	191	! barrier argument removed from cpu_log,
	192	! module interfaces removed
	193	!
[1309]	194	! 1308 2014-03-13 14:58:42Z fricke
	195	! Check, if the limit of the time dimension is exceeded for parallel output
	196	! To increase the performance for parallel output, the following is done:
	197	! - Update of time axis is only done by PE0
	198	!
[1245]	199	! 1244 2013-10-31 08:16:56Z raasch
	200	! Bugfix for index bounds in case of 3d-parallel output
	201	!
[1116]	202	! 1115 2013-03-26 18:16:16Z hoffmann
	203	! ql is calculated by calc_liquid_water_content
	204	!
[1107]	205	! 1106 2013-03-04 05:31:38Z raasch
	206	! array_kind renamed precision_kind
	207	!
[1077]	208	! 1076 2012-12-05 08:30:18Z hoffmann
	209	! Bugfix in output of ql
	210	!
[1054]	211	! 1053 2012-11-13 17:11:03Z hoffmann
	212	! +nr, qr, prr, qc and averaged quantities
	213	!
[1037]	214	! 1036 2012-10-22 13:43:42Z raasch
	215	! code put under GPL (PALM 3.9)
	216	!
[1035]	217	! 1031 2012-10-19 14:35:30Z raasch
	218	! netCDF4 without parallel file support implemented
	219	!
[1008]	220	! 1007 2012-09-19 14:30:36Z franke
	221	! Bugfix: missing calculation of ql_vp added
	222	!
[1]	223	! Revision 1.1 1997/09/03 06:29:36 raasch
	224	! Initial revision
	225	!
	226	!
	227	! Description:
	228	! ------------
[1682]	229	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	230	!------------------------------------------------------------------------------!
[1682]	231	SUBROUTINE data_output_3d( av )
	232
[1]	233
[1320]	234	USE arrays_3d, &
[3294]	235	ONLY: d_exner, e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, s, &
	236	tend, u, v, vpt, w
[3274]	237
[1]	238	USE averaging
[3274]	239
	240	USE basic_constants_and_equations_mod, &
	241	ONLY: lv_d_cp
	242
[3448]	243	USE biometeorology_mod, &
[3525]	244	ONLY: bio_data_output_3d
[3448]	245
[3274]	246	USE bulk_cloud_model_mod, &
	247	ONLY: bulk_cloud_model, bcm_data_output_3d
	248
[2696]	249	USE chemistry_model_mod, &
	250	ONLY: chem_data_output_3d
	251
[1320]	252	USE control_parameters, &
[3448]	253	ONLY: air_chemistry, biometeorology, do3d, do3d_no, do3d_time_count, &
[2696]	254	io_blocks, io_group, land_surface, message_string, &
[3294]	255	ntdim_3d, nz_do3d, ocean_mode, plant_canopy, &
[2232]	256	psolver, simulated_time, time_since_reference_point, &
	257	urban_surface, varnamelength
[3274]	258
[1320]	259	USE cpulog, &
	260	ONLY: log_point, cpu_log
[2817]	261
	262	USE gust_mod, &
	263	ONLY: gust_data_output_3d, gust_module_enabled
[3274]	264
[3405]	265	#if defined( __parallel )
[1320]	266	USE indices, &
[3241]	267	ONLY: nbgp, nxl, nxlg, nxr, nxrg, nyn, nyng, nys, nysg, nzb, nzt, &
	268	wall_flags_0
[3405]	269	#else
	270	USE indices, &
	271	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
	272	nzt, wall_flags_0
	273	#endif
[3274]	274
[1320]	275	USE kinds
[3274]	276
[1551]	277	USE land_surface_model_mod, &
[2232]	278	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	279
[1783]	280	#if defined( __netcdf )
	281	USE NETCDF
	282	#endif
	283
	284	USE netcdf_interface, &
[2696]	285	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
[1783]	286	netcdf_data_format, netcdf_handle_error
[1320]	287
[3294]	288	USE ocean_mod, &
	289	ONLY: ocean_data_output_3d
	290
[1320]	291	USE particle_attributes, &
[1359]	292	ONLY: grid_particles, number_of_particles, particles, &
	293	particle_advection_start, prt_count
[1320]	294
[1]	295	USE pegrid
	296
[2209]	297	USE plant_canopy_model_mod, &
[2746]	298	ONLY: pcm_data_output_3d
[2209]	299
[1585]	300	USE radiation_model_mod, &
[2696]	301	ONLY: nzub, nzut, radiation, radiation_data_output_3d
[3467]	302
	303	USE salsa_mod, &
	304	ONLY: salsa, salsa_data_output_3d
[1585]	305
[2696]	306	USE turbulence_closure_mod, &
	307	ONLY: tcm_data_output_3d
	308
[2007]	309	USE urban_surface_mod, &
[2696]	310	ONLY: usm_data_output_3d
[1585]	311
[2007]	312
[1]	313	IMPLICIT NONE
	314
[3554]	315	INTEGER(iwp) :: av !< flag for (non-)average output
[2696]	316	INTEGER(iwp) :: flag_nr !< number of masking flag
[3554]	317	INTEGER(iwp) :: i !< loop index
	318	INTEGER(iwp) :: ivar !< variable index
	319	INTEGER(iwp) :: j !< loop index
	320	INTEGER(iwp) :: k !< loop index
	321	INTEGER(iwp) :: n !< loop index
[1682]	322	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	323	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	324
[3554]	325	LOGICAL :: found !< true if output variable was found
	326	LOGICAL :: resorted !< true if variable is resorted
[1]	327
[3554]	328	REAL(wp) :: mean_r !< mean particle radius
	329	REAL(wp) :: s_r2 !< sum( particle-radius**2 )
	330	REAL(wp) :: s_r3 !< sum( particle-radius**3 )
[1]	331
[3554]	332	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !< output array
[1]	333
[3554]	334	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !< pointer to array which shall be output
[1]	335
[2011]	336	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	337
[1]	338	!
	339	!-- Return, if nothing to output
	340	IF ( do3d_no(av) == 0 ) RETURN
	341
	342	CALL cpu_log (log_point(14),'data_output_3d','start')
	343
	344	!
	345	!-- Open output file.
[2512]	346	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
	347	!-- own file and writes the data of its subdomain in binary format. After the
	348	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
[1031]	349	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	350	IF ( netcdf_data_format < 5 ) THEN
[2967]	351	#if defined( __parallel )
[1327]	352	CALL check_open( 30 )
[2967]	353	#endif
[1327]	354	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	355	ELSE
[1327]	356	CALL check_open( 106+av*10 )
[493]	357	ENDIF
[1]	358
	359	!
[1745]	360	!-- For parallel netcdf output the time axis must be limited. Return, if this
	361	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	362	!-- the given end time by the length of the given output interval.
	363	IF ( netcdf_data_format > 4 ) THEN
	364	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
	365	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
[3046]	366	simulated_time, '&because the maximum ', &
[1745]	367	'number of output time levels is ', &
	368	'exceeded.'
	369	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	370	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	371	RETURN
	372	ENDIF
	373	ENDIF
	374
	375	!
[1031]	376	!-- Update the netCDF time axis
[1308]	377	!-- In case of parallel output, this is only done by PE0 to increase the
	378	!-- performance.
[1]	379	#if defined( __netcdf )
[1308]	380	do3d_time_count(av) = do3d_time_count(av) + 1
	381	IF ( myid == 0 ) THEN
[1327]	382	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	383	(/ time_since_reference_point /), &
	384	start = (/ do3d_time_count(av) /), &
	385	count = (/ 1 /) )
[1783]	386	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	387	ENDIF
	388	#endif
	389
	390	!
	391	!-- Loop over all variables to be written.
[3554]	392	ivar = 1
[1]	393
[3554]	394	DO WHILE ( do3d(av,ivar)(1:1) /= ' ' )
[2007]	395
[1]	396	!
[2007]	397	!-- Temporary solution to account for data output within the new urban
	398	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	399	!-- Store the array chosen on the temporary array.
[3554]	400	trimvar = TRIM( do3d(av,ivar) )
[2011]	401	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
[2007]	402	trimvar = 'usm_output'
	403	resorted = .TRUE.
	404	nzb_do = nzub
	405	nzt_do = nzut
	406	ELSE
	407	resorted = .FALSE.
	408	nzb_do = nzb
	409	nzt_do = nz_do3d
	410	ENDIF
[1551]	411	!
[1980]	412	!-- Set flag to steer output of radiation, land-surface, or user-defined
	413	!-- quantities
	414	found = .FALSE.
	415	!
[1551]	416	!-- Allocate a temporary array with the desired output dimensions.
[2512]	417	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	418	!
	419	!-- Before each output, set array local_pf to fill value
	420	local_pf = fill_value
	421	!
	422	!-- Set masking flag for topography for not resorted arrays
	423	flag_nr = 0
[1551]	424
[2007]	425	SELECT CASE ( trimvar )
[1]	426
	427	CASE ( 'e' )
	428	IF ( av == 0 ) THEN
	429	to_be_resorted => e
	430	ELSE
[3004]	431	IF ( .NOT. ALLOCATED( e_av ) ) THEN
	432	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	433	e_av = REAL( fill_value, KIND = wp )
	434	ENDIF
[1]	435	to_be_resorted => e_av
	436	ENDIF
	437
[3421]	438	CASE ( 'thetal' )
[771]	439	IF ( av == 0 ) THEN
	440	to_be_resorted => pt
	441	ELSE
[3004]	442	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
	443	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	444	lpt_av = REAL( fill_value, KIND = wp )
	445	ENDIF
[771]	446	to_be_resorted => lpt_av
	447	ENDIF
	448
[1]	449	CASE ( 'p' )
	450	IF ( av == 0 ) THEN
[727]	451	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	452	to_be_resorted => p
	453	ELSE
[3004]	454	IF ( .NOT. ALLOCATED( p_av ) ) THEN
	455	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	456	p_av = REAL( fill_value, KIND = wp )
	457	ENDIF
[727]	458	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	459	to_be_resorted => p_av
	460	ENDIF
	461
	462	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	463	IF ( av == 0 ) THEN
[1359]	464	IF ( simulated_time >= particle_advection_start ) THEN
	465	tend = prt_count
	466	ELSE
	467	tend = 0.0_wp
	468	ENDIF
[2512]	469	DO i = nxl, nxr
	470	DO j = nys, nyn
[1551]	471	DO k = nzb_do, nzt_do
[1]	472	local_pf(i,j,k) = tend(k,j,i)
	473	ENDDO
	474	ENDDO
	475	ENDDO
	476	resorted = .TRUE.
	477	ELSE
[3004]	478	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
	479	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	480	pc_av = REAL( fill_value, KIND = wp )
	481	ENDIF
[1]	482	to_be_resorted => pc_av
	483	ENDIF
	484
[1359]	485	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	486	IF ( av == 0 ) THEN
[1359]	487	IF ( simulated_time >= particle_advection_start ) THEN
	488	DO i = nxl, nxr
	489	DO j = nys, nyn
[1551]	490	DO k = nzb_do, nzt_do
[1359]	491	number_of_particles = prt_count(k,j,i)
	492	IF (number_of_particles <= 0) CYCLE
	493	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	494	s_r2 = 0.0_wp
	495	s_r3 = 0.0_wp
	496	DO n = 1, number_of_particles
	497	IF ( particles(n)%particle_mask ) THEN
	498	s_r2 = s_r2 + particles(n)%radius*2 &
	499	particles(n)%weight_factor
	500	s_r3 = s_r3 + particles(n)%radius*3 &
	501	particles(n)%weight_factor
	502	ENDIF
	503	ENDDO
	504	IF ( s_r2 > 0.0_wp ) THEN
	505	mean_r = s_r3 / s_r2
	506	ELSE
	507	mean_r = 0.0_wp
	508	ENDIF
	509	tend(k,j,i) = mean_r
[1]	510	ENDDO
	511	ENDDO
	512	ENDDO
[1359]	513	ELSE
	514	tend = 0.0_wp
	515	ENDIF
[2512]	516	DO i = nxl, nxr
	517	DO j = nys, nyn
[1551]	518	DO k = nzb_do, nzt_do
[1]	519	local_pf(i,j,k) = tend(k,j,i)
	520	ENDDO
	521	ENDDO
	522	ENDDO
	523	resorted = .TRUE.
	524	ELSE
[3004]	525	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
	526	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	527	pr_av = REAL( fill_value, KIND = wp )
	528	ENDIF
[1]	529	to_be_resorted => pr_av
	530	ENDIF
	531
[3421]	532	CASE ( 'theta' )
[1]	533	IF ( av == 0 ) THEN
[3274]	534	IF ( .NOT. bulk_cloud_model ) THEN
[1]	535	to_be_resorted => pt
	536	ELSE
[2512]	537	DO i = nxl, nxr
	538	DO j = nys, nyn
[1551]	539	DO k = nzb_do, nzt_do
[3274]	540	local_pf(i,j,k) = pt(k,j,i) + lv_d_cp * &
	541	d_exner(k) * &
[1]	542	ql(k,j,i)
	543	ENDDO
	544	ENDDO
	545	ENDDO
	546	resorted = .TRUE.
	547	ENDIF
	548	ELSE
[3004]	549	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
	550	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	551	pt_av = REAL( fill_value, KIND = wp )
	552	ENDIF
[1]	553	to_be_resorted => pt_av
	554	ENDIF
	555
	556	CASE ( 'q' )
	557	IF ( av == 0 ) THEN
	558	to_be_resorted => q
	559	ELSE
[3004]	560	IF ( .NOT. ALLOCATED( q_av ) ) THEN
	561	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	562	q_av = REAL( fill_value, KIND = wp )
	563	ENDIF
[1]	564	to_be_resorted => q_av
	565	ENDIF
[691]	566
[1053]	567	CASE ( 'ql' )
	568	IF ( av == 0 ) THEN
[1115]	569	to_be_resorted => ql
[1053]	570	ELSE
[3004]	571	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
	572	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	573	ql_av = REAL( fill_value, KIND = wp )
	574	ENDIF
[1115]	575	to_be_resorted => ql_av
[1053]	576	ENDIF
	577
[1]	578	CASE ( 'ql_c' )
	579	IF ( av == 0 ) THEN
	580	to_be_resorted => ql_c
	581	ELSE
[3004]	582	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
	583	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	584	ql_c_av = REAL( fill_value, KIND = wp )
	585	ENDIF
[1]	586	to_be_resorted => ql_c_av
	587	ENDIF
	588
	589	CASE ( 'ql_v' )
	590	IF ( av == 0 ) THEN
	591	to_be_resorted => ql_v
	592	ELSE
[3004]	593	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
	594	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	595	ql_v_av = REAL( fill_value, KIND = wp )
	596	ENDIF
[1]	597	to_be_resorted => ql_v_av
	598	ENDIF
	599
	600	CASE ( 'ql_vp' )
	601	IF ( av == 0 ) THEN
[1359]	602	IF ( simulated_time >= particle_advection_start ) THEN
	603	DO i = nxl, nxr
	604	DO j = nys, nyn
[1551]	605	DO k = nzb_do, nzt_do
[1359]	606	number_of_particles = prt_count(k,j,i)
	607	IF (number_of_particles <= 0) CYCLE
	608	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	609	DO n = 1, number_of_particles
	610	IF ( particles(n)%particle_mask ) THEN
	611	tend(k,j,i) = tend(k,j,i) + &
	612	particles(n)%weight_factor / &
	613	prt_count(k,j,i)
	614	ENDIF
	615	ENDDO
[1007]	616	ENDDO
	617	ENDDO
	618	ENDDO
[1359]	619	ELSE
	620	tend = 0.0_wp
	621	ENDIF
[2512]	622	DO i = nxl, nxr
	623	DO j = nys, nyn
[1551]	624	DO k = nzb_do, nzt_do
[1007]	625	local_pf(i,j,k) = tend(k,j,i)
	626	ENDDO
	627	ENDDO
	628	ENDDO
	629	resorted = .TRUE.
[1]	630	ELSE
[3004]	631	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
	632	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	633	ql_vp_av = REAL( fill_value, KIND = wp )
	634	ENDIF
[1]	635	to_be_resorted => ql_vp_av
	636	ENDIF
	637
	638	CASE ( 'qv' )
	639	IF ( av == 0 ) THEN
[2512]	640	DO i = nxl, nxr
	641	DO j = nys, nyn
[1551]	642	DO k = nzb_do, nzt_do
[1]	643	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	644	ENDDO
	645	ENDDO
	646	ENDDO
	647	resorted = .TRUE.
	648	ELSE
[3004]	649	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
	650	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	651	qv_av = REAL( fill_value, KIND = wp )
	652	ENDIF
[1]	653	to_be_resorted => qv_av
	654	ENDIF
	655
	656	CASE ( 's' )
	657	IF ( av == 0 ) THEN
[1960]	658	to_be_resorted => s
[1]	659	ELSE
[3004]	660	IF ( .NOT. ALLOCATED( s_av ) ) THEN
	661	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	662	s_av = REAL( fill_value, KIND = wp )
	663	ENDIF
[355]	664	to_be_resorted => s_av
[1]	665	ENDIF
[691]	666
[1]	667	CASE ( 'u' )
[2696]	668	flag_nr = 1
[1]	669	IF ( av == 0 ) THEN
	670	to_be_resorted => u
	671	ELSE
[3004]	672	IF ( .NOT. ALLOCATED( u_av ) ) THEN
	673	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	674	u_av = REAL( fill_value, KIND = wp )
	675	ENDIF
[1]	676	to_be_resorted => u_av
	677	ENDIF
	678
	679	CASE ( 'v' )
[2696]	680	flag_nr = 2
[1]	681	IF ( av == 0 ) THEN
	682	to_be_resorted => v
	683	ELSE
[3004]	684	IF ( .NOT. ALLOCATED( v_av ) ) THEN
	685	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	686	v_av = REAL( fill_value, KIND = wp )
	687	ENDIF
[1]	688	to_be_resorted => v_av
	689	ENDIF
	690
[3421]	691	CASE ( 'thetav' )
[1]	692	IF ( av == 0 ) THEN
	693	to_be_resorted => vpt
	694	ELSE
[3004]	695	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
	696	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	697	vpt_av = REAL( fill_value, KIND = wp )
	698	ENDIF
[1]	699	to_be_resorted => vpt_av
	700	ENDIF
	701
	702	CASE ( 'w' )
[2696]	703	flag_nr = 3
[1]	704	IF ( av == 0 ) THEN
	705	to_be_resorted => w
	706	ELSE
[3004]	707	IF ( .NOT. ALLOCATED( w_av ) ) THEN
	708	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	709	w_av = REAL( fill_value, KIND = wp )
	710	ENDIF
[1]	711	to_be_resorted => w_av
	712	ENDIF
[2007]	713	!
	714	!-- Block of urban surface model outputs
	715	CASE ( 'usm_output' )
[3554]	716	CALL usm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[2007]	717	nzb_do, nzt_do )
[1]	718
	719	CASE DEFAULT
[1972]	720
[1]	721	!
[3294]	722	!-- Quantities of other modules
[3274]	723	IF ( .NOT. found .AND. bulk_cloud_model ) THEN
[3554]	724	CALL bcm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[3274]	725	nzb_do, nzt_do )
	726	resorted = .TRUE.
	727	ENDIF
	728
[3294]	729	IF ( .NOT. found .AND. air_chemistry ) THEN
[3554]	730	CALL chem_data_output_3d( av, do3d(av,ivar), found, &
[3294]	731	local_pf, fill_value, nzb_do, nzt_do )
	732	resorted = .TRUE.
	733	ENDIF
	734
	735	IF ( .NOT. found .AND. gust_module_enabled ) THEN
[3554]	736	CALL gust_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[3294]	737	nzb_do, nzt_do )
	738	resorted = .TRUE.
	739	ENDIF
	740
[3274]	741	IF ( .NOT. found .AND. land_surface ) THEN
[1972]	742	!
	743	!-- For soil model quantities, it is required to re-allocate local_pf
	744	nzb_do = nzb_soil
	745	nzt_do = nzt_soil
	746
	747	DEALLOCATE ( local_pf )
[2512]	748	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	749	local_pf = fill_value
[1972]	750
[3554]	751	CALL lsm_data_output_3d( av, do3d(av,ivar), found, local_pf )
[1972]	752	resorted = .TRUE.
[1976]	753
	754	!
	755	!-- If no soil model variable was found, re-allocate local_pf
	756	IF ( .NOT. found ) THEN
	757	nzb_do = nzb
	758	nzt_do = nz_do3d
	759
	760	DEALLOCATE ( local_pf )
[2512]	761	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	762	ENDIF
	763
[1972]	764	ENDIF
	765
[3294]	766	IF ( .NOT. found .AND. ocean_mode ) THEN
[3554]	767	CALL ocean_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[3294]	768	nzb_do, nzt_do )
[1976]	769	resorted = .TRUE.
	770	ENDIF
	771
[3294]	772	IF ( .NOT. found .AND. plant_canopy ) THEN
[3554]	773	CALL pcm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[3294]	774	fill_value, nzb_do, nzt_do )
[2817]	775	resorted = .TRUE.
	776	ENDIF
	777
[3294]	778	IF ( .NOT. found .AND. radiation ) THEN
[3554]	779	CALL radiation_data_output_3d( av, do3d(av,ivar), found, &
[3294]	780	local_pf, nzb_do, nzt_do )
[2696]	781	resorted = .TRUE.
	782	ENDIF
	783
[3294]	784	IF ( .NOT. found ) THEN
[3554]	785	CALL tcm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[3294]	786	nzb_do, nzt_do )
[2209]	787	resorted = .TRUE.
	788	ENDIF
[3467]	789
	790	!
	791	!-- SALSA output
	792	IF ( .NOT. found .AND. salsa ) THEN
[3554]	793	CALL salsa_data_output_3d( av, do3d(av,ivar), found, local_pf )
[3467]	794	resorted = .TRUE.
	795	ENDIF
[2209]	796
[3448]	797	IF ( .NOT. found .AND. biometeorology ) THEN
[3554]	798	CALL bio_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[3525]	799	nzb_do, nzt_do )
[3448]	800	ENDIF
	801
[2209]	802	!
[3294]	803	!-- User defined quantities
[1972]	804	IF ( .NOT. found ) THEN
[3554]	805	CALL user_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[1972]	806	nzb_do, nzt_do )
	807	resorted = .TRUE.
	808	ENDIF
[1]	809
[254]	810	IF ( .NOT. found ) THEN
[1320]	811	message_string = 'no output available for: ' // &
[3554]	812	TRIM( do3d(av,ivar) )
[254]	813	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	814	ENDIF
	815
	816	END SELECT
	817
	818	!
	819	!-- Resort the array to be output, if not done above
	820	IF ( .NOT. resorted ) THEN
[2512]	821	DO i = nxl, nxr
	822	DO j = nys, nyn
[1551]	823	DO k = nzb_do, nzt_do
[2696]	824	local_pf(i,j,k) = MERGE( &
	825	to_be_resorted(k,j,i), &
	826	REAL( fill_value, KIND = wp ), &
	827	BTEST( wall_flags_0(k,j,i), flag_nr ) )
[1]	828	ENDDO
	829	ENDDO
	830	ENDDO
	831	ENDIF
	832
	833	!
[1327]	834	!-- Output of the 3D-array
	835	#if defined( __parallel )
	836	IF ( netcdf_data_format < 5 ) THEN
[1]	837	!
[1327]	838	!-- Non-parallel netCDF output. Data is output in parallel in
	839	!-- FORTRAN binary format here, and later collected into one file by
	840	!-- combine_plot_fields
	841	IF ( myid == 0 ) THEN
	842	WRITE ( 30 ) time_since_reference_point, &
	843	do3d_time_count(av), av
[1]	844	ENDIF
[1327]	845	DO i = 0, io_blocks-1
	846	IF ( i == io_group ) THEN
[2512]	847	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[1551]	848	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	849	ENDIF
[1972]	850
[1327]	851	CALL MPI_BARRIER( comm2d, ierr )
[1972]	852
[1327]	853	ENDDO
[559]	854
[1327]	855	ELSE
[646]	856	#if defined( __netcdf )
[493]	857	!
[1327]	858	!-- Parallel output in netCDF4/HDF5 format.
[2512]	859	! IF ( nxr == nx .AND. nyn /= ny ) THEN
[3554]	860	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[2512]	861	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	862	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	863	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	864	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
[3554]	865	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[2512]	866	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	867	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	868	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	869	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
[3554]	870	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[2512]	871	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	872	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	873	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	874	! ELSE
[3554]	875	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[1551]	876	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	877	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	878	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[2512]	879	! ENDIF
[1783]	880	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	881	#endif
[1327]	882	ENDIF
[1]	883	#else
	884	#if defined( __netcdf )
[3554]	885	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[1551]	886	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	887	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[2512]	888	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	889	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	890	#endif
	891	#endif
	892
[3554]	893	ivar = ivar + 1
[1]	894
	895	!
[1551]	896	!-- Deallocate temporary array
	897	DEALLOCATE ( local_pf )
[1]	898
[1551]	899	ENDDO
[1]	900
[1318]	901	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	902
	903	END SUBROUTINE data_output_3d

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