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source: palm/trunk/SOURCE/data_output_3d.f90 @ 3031

Last change on this file since 3031 was 3014, checked in by maronga, 6 years ago
series of bugfixes
Property svn:keywords set to `Id`
File size: 32.9 KB

Rev	Line
[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2718]	17	! Copyright 1997-2018 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[1961]	22	!
[2233]	23	!
[1552]	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 3014 2018-05-09 08:42:38Z knoop $
[3014]	27	! Added nzb_do and nzt_do for some modules for 3d output
	28	!
	29	! 3004 2018-04-27 12:33:25Z Giersch
[3004]	30	! Allocation checks implemented (averaged data will be assigned to fill values
	31	! if no allocation happened so far)
	32	!
	33	! 2967 2018-04-13 11:22:08Z raasch
[2967]	34	! bugfix: missing parallel cpp-directives added
	35	!
	36	! 2817 2018-02-19 16:32:21Z knoop
[2817]	37	! Preliminary gust module interface implemented
	38	!
	39	! 2766 2018-01-22 17:17:47Z kanani
[2766]	40	! Removed preprocessor directive __chem
	41	!
	42	! 2756 2018-01-16 18:11:14Z suehring
[2756]	43	! Fill values for 3D output of chemical species introduced.
	44	!
	45	! 2746 2018-01-15 12:06:04Z suehring
[2746]	46	! Move flag plant canopy to modules
	47	!
	48	! 2718 2018-01-02 08:49:38Z maronga
[2716]	49	! Corrected "Former revisions" section
	50	!
	51	! 2696 2017-12-14 17:12:51Z kanani
	52	! Change in file header (GPL part)
[2696]	53	! Implementation of turbulence_closure_mod (TG)
	54	! Implementation of chemistry module (FK)
	55	! Set fill values at topography grid points or e.g. non-natural-type surface
	56	! in case of LSM output (MS)
	57	!
	58	! 2512 2017-10-04 08:26:59Z raasch
[2512]	59	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
	60	! no output of ghost layer data
	61	!
	62	! 2292 2017-06-20 09:51:42Z schwenkel
[2292]	63	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	64	! includes two more prognostic equations for cloud drop concentration (nc)
	65	! and cloud water content (qc).
	66	!
	67	! 2233 2017-05-30 18:08:54Z suehring
[1552]	68	!
[2233]	69	! 2232 2017-05-30 17:47:52Z suehring
	70	! Adjustments to new topography concept
	71	!
[2210]	72	! 2209 2017-04-19 09:34:46Z kanani
	73	! Added plant canopy model output
	74	!
[2032]	75	! 2031 2016-10-21 15:11:58Z knoop
	76	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	77	!
[2012]	78	! 2011 2016-09-19 17:29:57Z kanani
	79	! Flag urban_surface is now defined in module control_parameters,
	80	! changed prefix for urban surface model output to "usm_",
	81	! introduced control parameter varnamelength for LEN of trimvar.
	82	!
[2008]	83	! 2007 2016-08-24 15:47:17Z kanani
	84	! Added support for new urban surface model (temporary modifications of
	85	! SELECT CASE ( ) necessary, see variable trimvar)
	86	!
[2001]	87	! 2000 2016-08-20 18:09:15Z knoop
	88	! Forced header and separation lines into 80 columns
	89	!
[1981]	90	! 1980 2016-07-29 15:51:57Z suehring
	91	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	92	! to .F.
	93	!
[1977]	94	! 1976 2016-07-27 13:28:04Z maronga
	95	! Output of radiation quantities is now done directly in the respective module
	96	!
[1973]	97	! 1972 2016-07-26 07:52:02Z maronga
	98	! Output of land surface quantities is now done directly in the respective module.
	99	! Unnecessary directive __parallel removed.
	100	!
[1961]	101	! 1960 2016-07-12 16:34:24Z suehring
	102	! Scalar surface flux added
	103	!
[1851]	104	! 1849 2016-04-08 11:33:18Z hoffmann
	105	! prr moved to arrays_3d
	106	!
[1823]	107	! 1822 2016-04-07 07:49:42Z hoffmann
	108	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	109	!
[1809]	110	! 1808 2016-04-05 19:44:00Z raasch
	111	! test output removed
	112	!
[1784]	113	! 1783 2016-03-06 18:36:17Z raasch
	114	! name change of netcdf routines and module + related changes
	115	!
[1746]	116	! 1745 2016-02-05 13:06:51Z gronemeier
	117	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	118	!
[1692]	119	! 1691 2015-10-26 16:17:44Z maronga
	120	! Added output of radiative heating rates for RRTMG
	121	!
[1683]	122	! 1682 2015-10-07 23:56:08Z knoop
	123	! Code annotations made doxygen readable
	124	!
[1586]	125	! 1585 2015-04-30 07:05:52Z maronga
	126	! Added support for RRTMG
	127	!
[1552]	128	! 1551 2015-03-03 14:18:16Z maronga
[1551]	129	! Added suppport for land surface model and radiation model output. In the course
	130	! of this action, the limits for vertical loops have been changed (from nzb and
	131	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	132	! Moreover, a new vertical grid zs was introduced.
[1329]	133	!
[1360]	134	! 1359 2014-04-11 17:15:14Z hoffmann
	135	! New particle structure integrated.
	136	!
[1354]	137	! 1353 2014-04-08 15:21:23Z heinze
	138	! REAL constants provided with KIND-attribute
	139	!
[1329]	140	! 1327 2014-03-21 11:00:16Z raasch
	141	! parts concerning avs output removed,
	142	! -netcdf output queries
	143	!
[1321]	144	! 1320 2014-03-20 08:40:49Z raasch
[1320]	145	! ONLY-attribute added to USE-statements,
	146	! kind-parameters added to all INTEGER and REAL declaration statements,
	147	! kinds are defined in new module kinds,
	148	! old module precision_kind is removed,
	149	! revision history before 2012 removed,
	150	! comment fields (!:) to be used for variable explanations added to
	151	! all variable declaration statements
[674]	152	!
[1319]	153	! 1318 2014-03-17 13:35:16Z raasch
	154	! barrier argument removed from cpu_log,
	155	! module interfaces removed
	156	!
[1309]	157	! 1308 2014-03-13 14:58:42Z fricke
	158	! Check, if the limit of the time dimension is exceeded for parallel output
	159	! To increase the performance for parallel output, the following is done:
	160	! - Update of time axis is only done by PE0
	161	!
[1245]	162	! 1244 2013-10-31 08:16:56Z raasch
	163	! Bugfix for index bounds in case of 3d-parallel output
	164	!
[1116]	165	! 1115 2013-03-26 18:16:16Z hoffmann
	166	! ql is calculated by calc_liquid_water_content
	167	!
[1107]	168	! 1106 2013-03-04 05:31:38Z raasch
	169	! array_kind renamed precision_kind
	170	!
[1077]	171	! 1076 2012-12-05 08:30:18Z hoffmann
	172	! Bugfix in output of ql
	173	!
[1054]	174	! 1053 2012-11-13 17:11:03Z hoffmann
	175	! +nr, qr, prr, qc and averaged quantities
	176	!
[1037]	177	! 1036 2012-10-22 13:43:42Z raasch
	178	! code put under GPL (PALM 3.9)
	179	!
[1035]	180	! 1031 2012-10-19 14:35:30Z raasch
	181	! netCDF4 without parallel file support implemented
	182	!
[1008]	183	! 1007 2012-09-19 14:30:36Z franke
	184	! Bugfix: missing calculation of ql_vp added
	185	!
[1]	186	! Revision 1.1 1997/09/03 06:29:36 raasch
	187	! Initial revision
	188	!
	189	!
	190	! Description:
	191	! ------------
[1682]	192	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	193	!------------------------------------------------------------------------------!
[1682]	194	SUBROUTINE data_output_3d( av )
	195
[1]	196
[1320]	197	USE arrays_3d, &
[2292]	198	ONLY: e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, rho_ocean, s, &
	199	sa, tend, u, v, vpt, w
[1320]	200
[1]	201	USE averaging
[1320]	202
[2696]	203	USE chemistry_model_mod, &
	204	ONLY: chem_data_output_3d
	205
[1320]	206	USE cloud_parameters, &
[1849]	207	ONLY: l_d_cp, pt_d_t
[1320]	208
	209	USE control_parameters, &
[2696]	210	ONLY: air_chemistry, cloud_physics, do3d, do3d_no, do3d_time_count, &
	211	io_blocks, io_group, land_surface, message_string, &
[2746]	212	ntdim_3d, nz_do3d, plant_canopy, &
[2232]	213	psolver, simulated_time, time_since_reference_point, &
	214	urban_surface, varnamelength
[1320]	215
	216	USE cpulog, &
	217	ONLY: log_point, cpu_log
[2817]	218
	219	USE gust_mod, &
	220	ONLY: gust_data_output_3d, gust_module_enabled
[1320]	221
	222	USE indices, &
[3004]	223	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
	224	nzt, wall_flags_0
[1320]	225
	226	USE kinds
	227
[1551]	228	USE land_surface_model_mod, &
[2232]	229	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	230
[1783]	231	#if defined( __netcdf )
	232	USE NETCDF
	233	#endif
	234
	235	USE netcdf_interface, &
[2696]	236	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
[1783]	237	netcdf_data_format, netcdf_handle_error
[1320]	238
	239	USE particle_attributes, &
[1359]	240	ONLY: grid_particles, number_of_particles, particles, &
	241	particle_advection_start, prt_count
[1320]	242
[1]	243	USE pegrid
	244
[2209]	245	USE plant_canopy_model_mod, &
[2746]	246	ONLY: pcm_data_output_3d
[2209]	247
[1585]	248	USE radiation_model_mod, &
[2696]	249	ONLY: nzub, nzut, radiation, radiation_data_output_3d
[1585]	250
[2696]	251	USE turbulence_closure_mod, &
	252	ONLY: tcm_data_output_3d
	253
[2007]	254	USE urban_surface_mod, &
[2696]	255	ONLY: usm_data_output_3d
[1585]	256
[2007]	257
[1]	258	IMPLICIT NONE
	259
[1682]	260	INTEGER(iwp) :: av !<
[2696]	261	INTEGER(iwp) :: flag_nr !< number of masking flag
[1682]	262	INTEGER(iwp) :: i !<
	263	INTEGER(iwp) :: if !<
	264	INTEGER(iwp) :: j !<
	265	INTEGER(iwp) :: k !<
	266	INTEGER(iwp) :: n !<
	267	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	268	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	269
[1682]	270	LOGICAL :: found !<
	271	LOGICAL :: resorted !<
[1]	272
[1682]	273	REAL(wp) :: mean_r !<
	274	REAL(wp) :: s_r2 !<
	275	REAL(wp) :: s_r3 !<
[1]	276
[1682]	277	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
[1]	278
[1682]	279	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
[1]	280
[2011]	281	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	282
[1]	283	!
	284	!-- Return, if nothing to output
	285	IF ( do3d_no(av) == 0 ) RETURN
	286
	287	CALL cpu_log (log_point(14),'data_output_3d','start')
	288
	289	!
	290	!-- Open output file.
[2512]	291	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
	292	!-- own file and writes the data of its subdomain in binary format. After the
	293	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
[1031]	294	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	295	IF ( netcdf_data_format < 5 ) THEN
[2967]	296	#if defined( __parallel )
[1327]	297	CALL check_open( 30 )
[2967]	298	#endif
[1327]	299	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	300	ELSE
[1327]	301	CALL check_open( 106+av*10 )
[493]	302	ENDIF
[1]	303
	304	!
[1745]	305	!-- For parallel netcdf output the time axis must be limited. Return, if this
	306	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	307	!-- the given end time by the length of the given output interval.
	308	IF ( netcdf_data_format > 4 ) THEN
	309	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
	310	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
	311	simulated_time, '&because the maximum ', &
	312	'number of output time levels is ', &
	313	'exceeded.'
	314	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	315	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	316	RETURN
	317	ENDIF
	318	ENDIF
	319
	320	!
[1031]	321	!-- Update the netCDF time axis
[1308]	322	!-- In case of parallel output, this is only done by PE0 to increase the
	323	!-- performance.
[1]	324	#if defined( __netcdf )
[1308]	325	do3d_time_count(av) = do3d_time_count(av) + 1
	326	IF ( myid == 0 ) THEN
[1327]	327	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	328	(/ time_since_reference_point /), &
	329	start = (/ do3d_time_count(av) /), &
	330	count = (/ 1 /) )
[1783]	331	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	332	ENDIF
	333	#endif
	334
	335	!
	336	!-- Loop over all variables to be written.
	337	if = 1
	338
	339	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
[2007]	340
[1]	341	!
[2007]	342	!-- Temporary solution to account for data output within the new urban
	343	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	344	!-- Store the array chosen on the temporary array.
[2007]	345	trimvar = TRIM( do3d(av,if) )
[2011]	346	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
[2007]	347	trimvar = 'usm_output'
	348	resorted = .TRUE.
	349	nzb_do = nzub
	350	nzt_do = nzut
	351	ELSE
	352	resorted = .FALSE.
	353	nzb_do = nzb
	354	nzt_do = nz_do3d
	355	ENDIF
[1551]	356	!
[1980]	357	!-- Set flag to steer output of radiation, land-surface, or user-defined
	358	!-- quantities
	359	found = .FALSE.
	360	!
[1551]	361	!-- Allocate a temporary array with the desired output dimensions.
[2512]	362	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	363	!
	364	!-- Before each output, set array local_pf to fill value
	365	local_pf = fill_value
	366	!
	367	!-- Set masking flag for topography for not resorted arrays
	368	flag_nr = 0
[1551]	369
[2007]	370	SELECT CASE ( trimvar )
[1]	371
	372	CASE ( 'e' )
	373	IF ( av == 0 ) THEN
	374	to_be_resorted => e
	375	ELSE
[3004]	376	IF ( .NOT. ALLOCATED( e_av ) ) THEN
	377	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	378	e_av = REAL( fill_value, KIND = wp )
	379	ENDIF
[1]	380	to_be_resorted => e_av
	381	ENDIF
	382
[771]	383	CASE ( 'lpt' )
	384	IF ( av == 0 ) THEN
	385	to_be_resorted => pt
	386	ELSE
[3004]	387	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
	388	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	389	lpt_av = REAL( fill_value, KIND = wp )
	390	ENDIF
[771]	391	to_be_resorted => lpt_av
	392	ENDIF
	393
[2292]	394	CASE ( 'nc' )
	395	IF ( av == 0 ) THEN
	396	to_be_resorted => nc
	397	ELSE
[3004]	398	IF ( .NOT. ALLOCATED( nc_av ) ) THEN
	399	ALLOCATE( nc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	400	nc_av = REAL( fill_value, KIND = wp )
	401	ENDIF
[2292]	402	to_be_resorted => nc_av
	403	ENDIF
	404
[1053]	405	CASE ( 'nr' )
	406	IF ( av == 0 ) THEN
	407	to_be_resorted => nr
	408	ELSE
[3004]	409	IF ( .NOT. ALLOCATED( nr_av ) ) THEN
	410	ALLOCATE( nr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	411	nr_av = REAL( fill_value, KIND = wp )
	412	ENDIF
[1053]	413	to_be_resorted => nr_av
	414	ENDIF
	415
[1]	416	CASE ( 'p' )
	417	IF ( av == 0 ) THEN
[727]	418	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	419	to_be_resorted => p
	420	ELSE
[3004]	421	IF ( .NOT. ALLOCATED( p_av ) ) THEN
	422	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	423	p_av = REAL( fill_value, KIND = wp )
	424	ENDIF
[727]	425	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	426	to_be_resorted => p_av
	427	ENDIF
	428
	429	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	430	IF ( av == 0 ) THEN
[1359]	431	IF ( simulated_time >= particle_advection_start ) THEN
	432	tend = prt_count
	433	ELSE
	434	tend = 0.0_wp
	435	ENDIF
[2512]	436	DO i = nxl, nxr
	437	DO j = nys, nyn
[1551]	438	DO k = nzb_do, nzt_do
[1]	439	local_pf(i,j,k) = tend(k,j,i)
	440	ENDDO
	441	ENDDO
	442	ENDDO
	443	resorted = .TRUE.
	444	ELSE
[3004]	445	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
	446	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	447	pc_av = REAL( fill_value, KIND = wp )
	448	ENDIF
[1]	449	to_be_resorted => pc_av
	450	ENDIF
	451
[1359]	452	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	453	IF ( av == 0 ) THEN
[1359]	454	IF ( simulated_time >= particle_advection_start ) THEN
	455	DO i = nxl, nxr
	456	DO j = nys, nyn
[1551]	457	DO k = nzb_do, nzt_do
[1359]	458	number_of_particles = prt_count(k,j,i)
	459	IF (number_of_particles <= 0) CYCLE
	460	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	461	s_r2 = 0.0_wp
	462	s_r3 = 0.0_wp
	463	DO n = 1, number_of_particles
	464	IF ( particles(n)%particle_mask ) THEN
	465	s_r2 = s_r2 + particles(n)%radius*2 &
	466	particles(n)%weight_factor
	467	s_r3 = s_r3 + particles(n)%radius*3 &
	468	particles(n)%weight_factor
	469	ENDIF
	470	ENDDO
	471	IF ( s_r2 > 0.0_wp ) THEN
	472	mean_r = s_r3 / s_r2
	473	ELSE
	474	mean_r = 0.0_wp
	475	ENDIF
	476	tend(k,j,i) = mean_r
[1]	477	ENDDO
	478	ENDDO
	479	ENDDO
[1359]	480	ELSE
	481	tend = 0.0_wp
	482	ENDIF
[2512]	483	DO i = nxl, nxr
	484	DO j = nys, nyn
[1551]	485	DO k = nzb_do, nzt_do
[1]	486	local_pf(i,j,k) = tend(k,j,i)
	487	ENDDO
	488	ENDDO
	489	ENDDO
	490	resorted = .TRUE.
	491	ELSE
[3004]	492	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
	493	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	494	pr_av = REAL( fill_value, KIND = wp )
	495	ENDIF
[1]	496	to_be_resorted => pr_av
	497	ENDIF
	498
[1053]	499	CASE ( 'prr' )
	500	IF ( av == 0 ) THEN
[2512]	501	DO i = nxl, nxr
	502	DO j = nys, nyn
[1822]	503	DO k = nzb_do, nzt_do
[1053]	504	local_pf(i,j,k) = prr(k,j,i)
	505	ENDDO
	506	ENDDO
	507	ENDDO
	508	ELSE
[3004]	509	IF ( .NOT. ALLOCATED( prr_av ) ) THEN
	510	ALLOCATE( prr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	511	prr_av = REAL( fill_value, KIND = wp )
	512	ENDIF
[2512]	513	DO i = nxl, nxr
	514	DO j = nys, nyn
[1822]	515	DO k = nzb_do, nzt_do
[1053]	516	local_pf(i,j,k) = prr_av(k,j,i)
	517	ENDDO
	518	ENDDO
	519	ENDDO
	520	ENDIF
	521	resorted = .TRUE.
	522
[1]	523	CASE ( 'pt' )
	524	IF ( av == 0 ) THEN
	525	IF ( .NOT. cloud_physics ) THEN
	526	to_be_resorted => pt
	527	ELSE
[2512]	528	DO i = nxl, nxr
	529	DO j = nys, nyn
[1551]	530	DO k = nzb_do, nzt_do
[1320]	531	local_pf(i,j,k) = pt(k,j,i) + l_d_cp * &
	532	pt_d_t(k) * &
[1]	533	ql(k,j,i)
	534	ENDDO
	535	ENDDO
	536	ENDDO
	537	resorted = .TRUE.
	538	ENDIF
	539	ELSE
[3004]	540	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
	541	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	542	pt_av = REAL( fill_value, KIND = wp )
	543	ENDIF
[1]	544	to_be_resorted => pt_av
	545	ENDIF
	546
	547	CASE ( 'q' )
	548	IF ( av == 0 ) THEN
	549	to_be_resorted => q
	550	ELSE
[3004]	551	IF ( .NOT. ALLOCATED( q_av ) ) THEN
	552	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	553	q_av = REAL( fill_value, KIND = wp )
	554	ENDIF
[1]	555	to_be_resorted => q_av
	556	ENDIF
[691]	557
[1053]	558	CASE ( 'qc' )
[1]	559	IF ( av == 0 ) THEN
[1115]	560	to_be_resorted => qc
[1]	561	ELSE
[3004]	562	IF ( .NOT. ALLOCATED( qc_av ) ) THEN
	563	ALLOCATE( qc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	564	qc_av = REAL( fill_value, KIND = wp )
	565	ENDIF
[1115]	566	to_be_resorted => qc_av
[1]	567	ENDIF
	568
[1053]	569	CASE ( 'ql' )
	570	IF ( av == 0 ) THEN
[1115]	571	to_be_resorted => ql
[1053]	572	ELSE
[3004]	573	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
	574	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	575	ql_av = REAL( fill_value, KIND = wp )
	576	ENDIF
[1115]	577	to_be_resorted => ql_av
[1053]	578	ENDIF
	579
[1]	580	CASE ( 'ql_c' )
	581	IF ( av == 0 ) THEN
	582	to_be_resorted => ql_c
	583	ELSE
[3004]	584	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
	585	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	586	ql_c_av = REAL( fill_value, KIND = wp )
	587	ENDIF
[1]	588	to_be_resorted => ql_c_av
	589	ENDIF
	590
	591	CASE ( 'ql_v' )
	592	IF ( av == 0 ) THEN
	593	to_be_resorted => ql_v
	594	ELSE
[3004]	595	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
	596	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	597	ql_v_av = REAL( fill_value, KIND = wp )
	598	ENDIF
[1]	599	to_be_resorted => ql_v_av
	600	ENDIF
	601
	602	CASE ( 'ql_vp' )
	603	IF ( av == 0 ) THEN
[1359]	604	IF ( simulated_time >= particle_advection_start ) THEN
	605	DO i = nxl, nxr
	606	DO j = nys, nyn
[1551]	607	DO k = nzb_do, nzt_do
[1359]	608	number_of_particles = prt_count(k,j,i)
	609	IF (number_of_particles <= 0) CYCLE
	610	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	611	DO n = 1, number_of_particles
	612	IF ( particles(n)%particle_mask ) THEN
	613	tend(k,j,i) = tend(k,j,i) + &
	614	particles(n)%weight_factor / &
	615	prt_count(k,j,i)
	616	ENDIF
	617	ENDDO
[1007]	618	ENDDO
	619	ENDDO
	620	ENDDO
[1359]	621	ELSE
	622	tend = 0.0_wp
	623	ENDIF
[2512]	624	DO i = nxl, nxr
	625	DO j = nys, nyn
[1551]	626	DO k = nzb_do, nzt_do
[1007]	627	local_pf(i,j,k) = tend(k,j,i)
	628	ENDDO
	629	ENDDO
	630	ENDDO
	631	resorted = .TRUE.
[1]	632	ELSE
[3004]	633	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
	634	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	635	ql_vp_av = REAL( fill_value, KIND = wp )
	636	ENDIF
[1]	637	to_be_resorted => ql_vp_av
	638	ENDIF
	639
[1053]	640	CASE ( 'qr' )
	641	IF ( av == 0 ) THEN
	642	to_be_resorted => qr
	643	ELSE
[3004]	644	IF ( .NOT. ALLOCATED( qr_av ) ) THEN
	645	ALLOCATE( qr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	646	qr_av = REAL( fill_value, KIND = wp )
	647	ENDIF
[1053]	648	to_be_resorted => qr_av
	649	ENDIF
	650
[1]	651	CASE ( 'qv' )
	652	IF ( av == 0 ) THEN
[2512]	653	DO i = nxl, nxr
	654	DO j = nys, nyn
[1551]	655	DO k = nzb_do, nzt_do
[1]	656	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	657	ENDDO
	658	ENDDO
	659	ENDDO
	660	resorted = .TRUE.
	661	ELSE
[3004]	662	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
	663	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	664	qv_av = REAL( fill_value, KIND = wp )
	665	ENDIF
[1]	666	to_be_resorted => qv_av
	667	ENDIF
	668
[2031]	669	CASE ( 'rho_ocean' )
[96]	670	IF ( av == 0 ) THEN
[2031]	671	to_be_resorted => rho_ocean
[96]	672	ELSE
[3004]	673	IF ( .NOT. ALLOCATED( rho_ocean_av ) ) THEN
	674	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	675	u_av = REAL( fill_value, KIND = wp )
	676	ENDIF
[2031]	677	to_be_resorted => rho_ocean_av
[96]	678	ENDIF
[691]	679
[1]	680	CASE ( 's' )
	681	IF ( av == 0 ) THEN
[1960]	682	to_be_resorted => s
[1]	683	ELSE
[3004]	684	IF ( .NOT. ALLOCATED( s_av ) ) THEN
	685	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	686	s_av = REAL( fill_value, KIND = wp )
	687	ENDIF
[355]	688	to_be_resorted => s_av
[1]	689	ENDIF
[691]	690
[96]	691	CASE ( 'sa' )
	692	IF ( av == 0 ) THEN
	693	to_be_resorted => sa
	694	ELSE
[3004]	695	IF ( .NOT. ALLOCATED( sa_av ) ) THEN
	696	ALLOCATE( sa_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	697	sa_av = REAL( fill_value, KIND = wp )
	698	ENDIF
[96]	699	to_be_resorted => sa_av
	700	ENDIF
[691]	701
[1]	702	CASE ( 'u' )
[2696]	703	flag_nr = 1
[1]	704	IF ( av == 0 ) THEN
	705	to_be_resorted => u
	706	ELSE
[3004]	707	IF ( .NOT. ALLOCATED( u_av ) ) THEN
	708	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	709	u_av = REAL( fill_value, KIND = wp )
	710	ENDIF
[1]	711	to_be_resorted => u_av
	712	ENDIF
	713
	714	CASE ( 'v' )
[2696]	715	flag_nr = 2
[1]	716	IF ( av == 0 ) THEN
	717	to_be_resorted => v
	718	ELSE
[3004]	719	IF ( .NOT. ALLOCATED( v_av ) ) THEN
	720	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	721	v_av = REAL( fill_value, KIND = wp )
	722	ENDIF
[1]	723	to_be_resorted => v_av
	724	ENDIF
	725
	726	CASE ( 'vpt' )
	727	IF ( av == 0 ) THEN
	728	to_be_resorted => vpt
	729	ELSE
[3004]	730	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
	731	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	732	vpt_av = REAL( fill_value, KIND = wp )
	733	ENDIF
[1]	734	to_be_resorted => vpt_av
	735	ENDIF
	736
	737	CASE ( 'w' )
[2696]	738	flag_nr = 3
[1]	739	IF ( av == 0 ) THEN
	740	to_be_resorted => w
	741	ELSE
[3004]	742	IF ( .NOT. ALLOCATED( w_av ) ) THEN
	743	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	744	w_av = REAL( fill_value, KIND = wp )
	745	ENDIF
[1]	746	to_be_resorted => w_av
	747	ENDIF
[2007]	748	!
	749	!-- Block of urban surface model outputs
	750	CASE ( 'usm_output' )
	751	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
	752	nzb_do, nzt_do )
[1]	753
	754	CASE DEFAULT
[1972]	755
[1]	756	!
[1972]	757	!-- Land surface quantity
	758	IF ( land_surface ) THEN
	759	!
	760	!-- For soil model quantities, it is required to re-allocate local_pf
	761	nzb_do = nzb_soil
	762	nzt_do = nzt_soil
	763
	764	DEALLOCATE ( local_pf )
[2512]	765	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	766	local_pf = fill_value
[1972]	767
	768	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
	769	resorted = .TRUE.
[1976]	770
	771	!
	772	!-- If no soil model variable was found, re-allocate local_pf
	773	IF ( .NOT. found ) THEN
	774	nzb_do = nzb
	775	nzt_do = nz_do3d
	776
	777	DEALLOCATE ( local_pf )
[2512]	778	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	779	ENDIF
	780
[1972]	781	ENDIF
	782
[2696]	783	IF ( .NOT. found ) THEN
[3014]	784	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	785	nzb_do, nzt_do )
[2696]	786	resorted = .TRUE.
	787	ENDIF
	788
[1972]	789	!
[1976]	790	!-- Radiation quantity
	791	IF ( .NOT. found .AND. radiation ) THEN
	792	CALL radiation_data_output_3d( av, do3d(av,if), found, &
[3014]	793	local_pf, nzb_do, nzt_do )
[1976]	794	resorted = .TRUE.
	795	ENDIF
	796
	797	!
[2817]	798	!-- Gust module quantities
	799	IF ( .NOT. found .AND. gust_module_enabled ) THEN
	800	CALL gust_data_output_3d( av, do3d(av,if), found, local_pf, &
	801	nzb_do, nzt_do )
	802	resorted = .TRUE.
	803	ENDIF
	804
	805	!
[2696]	806	!-- Chemistry model output
	807	IF ( .NOT. found .AND. air_chemistry ) THEN
	808	CALL chem_data_output_3d( av, do3d(av,if), found, &
[3014]	809	local_pf, fill_value, nzb_do, nzt_do )
[2696]	810	resorted = .TRUE.
	811	ENDIF
	812
	813	!
[2209]	814	!-- Plant canopy model output
	815	IF ( .NOT. found .AND. plant_canopy ) THEN
[2696]	816	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
[3014]	817	fill_value, nzb_do, nzt_do )
[2209]	818	resorted = .TRUE.
	819	ENDIF
	820
	821	!
[1]	822	!-- User defined quantity
[1972]	823	IF ( .NOT. found ) THEN
	824	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
	825	nzb_do, nzt_do )
	826	resorted = .TRUE.
	827	ENDIF
[1]	828
[254]	829	IF ( .NOT. found ) THEN
[1320]	830	message_string = 'no output available for: ' // &
[274]	831	TRIM( do3d(av,if) )
[254]	832	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	833	ENDIF
	834
	835	END SELECT
	836
	837	!
	838	!-- Resort the array to be output, if not done above
	839	IF ( .NOT. resorted ) THEN
[2512]	840	DO i = nxl, nxr
	841	DO j = nys, nyn
[1551]	842	DO k = nzb_do, nzt_do
[2696]	843	local_pf(i,j,k) = MERGE( &
	844	to_be_resorted(k,j,i), &
	845	REAL( fill_value, KIND = wp ), &
	846	BTEST( wall_flags_0(k,j,i), flag_nr ) )
[1]	847	ENDDO
	848	ENDDO
	849	ENDDO
	850	ENDIF
	851
	852	!
[1327]	853	!-- Output of the 3D-array
	854	#if defined( __parallel )
	855	IF ( netcdf_data_format < 5 ) THEN
[1]	856	!
[1327]	857	!-- Non-parallel netCDF output. Data is output in parallel in
	858	!-- FORTRAN binary format here, and later collected into one file by
	859	!-- combine_plot_fields
	860	IF ( myid == 0 ) THEN
	861	WRITE ( 30 ) time_since_reference_point, &
	862	do3d_time_count(av), av
[1]	863	ENDIF
[1327]	864	DO i = 0, io_blocks-1
	865	IF ( i == io_group ) THEN
[2512]	866	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[1551]	867	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	868	ENDIF
[1972]	869
[1327]	870	CALL MPI_BARRIER( comm2d, ierr )
[1972]	871
[1327]	872	ENDDO
[559]	873
[1327]	874	ELSE
[646]	875	#if defined( __netcdf )
[493]	876	!
[1327]	877	!-- Parallel output in netCDF4/HDF5 format.
[2512]	878	! IF ( nxr == nx .AND. nyn /= ny ) THEN
	879	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	880	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	881	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	882	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	883	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
	884	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	885	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	886	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	887	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	888	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
	889	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	890	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	891	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	892	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	893	! ELSE
[1327]	894	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	895	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	896	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	897	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[2512]	898	! ENDIF
[1783]	899	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	900	#endif
[1327]	901	ENDIF
[1]	902	#else
	903	#if defined( __netcdf )
[1327]	904	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	905	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	906	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[2512]	907	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	908	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	909	#endif
	910	#endif
	911
	912	if = if + 1
	913
	914	!
[1551]	915	!-- Deallocate temporary array
	916	DEALLOCATE ( local_pf )
[1]	917
[1551]	918	ENDDO
[1]	919
[1318]	920	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	921
	922	!
	923	!-- Formats.
[1320]	924	3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ &
[1]	925	'label = ',A,A)
	926
	927	END SUBROUTINE data_output_3d

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