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source: palm/trunk/SOURCE/data_output_3d.f90 @ 3004

Last change on this file since 3004 was 3004, checked in by Giersch, 6 years ago
precipitation_rate removed, further allocation checks for data output of averaged quantities implemented, double CALL of flow_statistics at the beginning of time_integration removed, further minor bugfixes, comments added
Property svn:keywords set to `Id`
File size: 32.7 KB

Rev	Line
[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2718]	17	! Copyright 1997-2018 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[1961]	22	!
[2233]	23	!
[1552]	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 3004 2018-04-27 12:33:25Z Giersch $
[3004]	27	! Allocation checks implemented (averaged data will be assigned to fill values
	28	! if no allocation happened so far)
	29	!
	30	! 2967 2018-04-13 11:22:08Z raasch
[2967]	31	! bugfix: missing parallel cpp-directives added
	32	!
	33	! 2817 2018-02-19 16:32:21Z knoop
[2817]	34	! Preliminary gust module interface implemented
	35	!
	36	! 2766 2018-01-22 17:17:47Z kanani
[2766]	37	! Removed preprocessor directive __chem
	38	!
	39	! 2756 2018-01-16 18:11:14Z suehring
[2756]	40	! Fill values for 3D output of chemical species introduced.
	41	!
	42	! 2746 2018-01-15 12:06:04Z suehring
[2746]	43	! Move flag plant canopy to modules
	44	!
	45	! 2718 2018-01-02 08:49:38Z maronga
[2716]	46	! Corrected "Former revisions" section
	47	!
	48	! 2696 2017-12-14 17:12:51Z kanani
	49	! Change in file header (GPL part)
[2696]	50	! Implementation of turbulence_closure_mod (TG)
	51	! Implementation of chemistry module (FK)
	52	! Set fill values at topography grid points or e.g. non-natural-type surface
	53	! in case of LSM output (MS)
	54	!
	55	! 2512 2017-10-04 08:26:59Z raasch
[2512]	56	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
	57	! no output of ghost layer data
	58	!
	59	! 2292 2017-06-20 09:51:42Z schwenkel
[2292]	60	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	61	! includes two more prognostic equations for cloud drop concentration (nc)
	62	! and cloud water content (qc).
	63	!
	64	! 2233 2017-05-30 18:08:54Z suehring
[1552]	65	!
[2233]	66	! 2232 2017-05-30 17:47:52Z suehring
	67	! Adjustments to new topography concept
	68	!
[2210]	69	! 2209 2017-04-19 09:34:46Z kanani
	70	! Added plant canopy model output
	71	!
[2032]	72	! 2031 2016-10-21 15:11:58Z knoop
	73	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	74	!
[2012]	75	! 2011 2016-09-19 17:29:57Z kanani
	76	! Flag urban_surface is now defined in module control_parameters,
	77	! changed prefix for urban surface model output to "usm_",
	78	! introduced control parameter varnamelength for LEN of trimvar.
	79	!
[2008]	80	! 2007 2016-08-24 15:47:17Z kanani
	81	! Added support for new urban surface model (temporary modifications of
	82	! SELECT CASE ( ) necessary, see variable trimvar)
	83	!
[2001]	84	! 2000 2016-08-20 18:09:15Z knoop
	85	! Forced header and separation lines into 80 columns
	86	!
[1981]	87	! 1980 2016-07-29 15:51:57Z suehring
	88	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	89	! to .F.
	90	!
[1977]	91	! 1976 2016-07-27 13:28:04Z maronga
	92	! Output of radiation quantities is now done directly in the respective module
	93	!
[1973]	94	! 1972 2016-07-26 07:52:02Z maronga
	95	! Output of land surface quantities is now done directly in the respective module.
	96	! Unnecessary directive __parallel removed.
	97	!
[1961]	98	! 1960 2016-07-12 16:34:24Z suehring
	99	! Scalar surface flux added
	100	!
[1851]	101	! 1849 2016-04-08 11:33:18Z hoffmann
	102	! prr moved to arrays_3d
	103	!
[1823]	104	! 1822 2016-04-07 07:49:42Z hoffmann
	105	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	106	!
[1809]	107	! 1808 2016-04-05 19:44:00Z raasch
	108	! test output removed
	109	!
[1784]	110	! 1783 2016-03-06 18:36:17Z raasch
	111	! name change of netcdf routines and module + related changes
	112	!
[1746]	113	! 1745 2016-02-05 13:06:51Z gronemeier
	114	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	115	!
[1692]	116	! 1691 2015-10-26 16:17:44Z maronga
	117	! Added output of radiative heating rates for RRTMG
	118	!
[1683]	119	! 1682 2015-10-07 23:56:08Z knoop
	120	! Code annotations made doxygen readable
	121	!
[1586]	122	! 1585 2015-04-30 07:05:52Z maronga
	123	! Added support for RRTMG
	124	!
[1552]	125	! 1551 2015-03-03 14:18:16Z maronga
[1551]	126	! Added suppport for land surface model and radiation model output. In the course
	127	! of this action, the limits for vertical loops have been changed (from nzb and
	128	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	129	! Moreover, a new vertical grid zs was introduced.
[1329]	130	!
[1360]	131	! 1359 2014-04-11 17:15:14Z hoffmann
	132	! New particle structure integrated.
	133	!
[1354]	134	! 1353 2014-04-08 15:21:23Z heinze
	135	! REAL constants provided with KIND-attribute
	136	!
[1329]	137	! 1327 2014-03-21 11:00:16Z raasch
	138	! parts concerning avs output removed,
	139	! -netcdf output queries
	140	!
[1321]	141	! 1320 2014-03-20 08:40:49Z raasch
[1320]	142	! ONLY-attribute added to USE-statements,
	143	! kind-parameters added to all INTEGER and REAL declaration statements,
	144	! kinds are defined in new module kinds,
	145	! old module precision_kind is removed,
	146	! revision history before 2012 removed,
	147	! comment fields (!:) to be used for variable explanations added to
	148	! all variable declaration statements
[674]	149	!
[1319]	150	! 1318 2014-03-17 13:35:16Z raasch
	151	! barrier argument removed from cpu_log,
	152	! module interfaces removed
	153	!
[1309]	154	! 1308 2014-03-13 14:58:42Z fricke
	155	! Check, if the limit of the time dimension is exceeded for parallel output
	156	! To increase the performance for parallel output, the following is done:
	157	! - Update of time axis is only done by PE0
	158	!
[1245]	159	! 1244 2013-10-31 08:16:56Z raasch
	160	! Bugfix for index bounds in case of 3d-parallel output
	161	!
[1116]	162	! 1115 2013-03-26 18:16:16Z hoffmann
	163	! ql is calculated by calc_liquid_water_content
	164	!
[1107]	165	! 1106 2013-03-04 05:31:38Z raasch
	166	! array_kind renamed precision_kind
	167	!
[1077]	168	! 1076 2012-12-05 08:30:18Z hoffmann
	169	! Bugfix in output of ql
	170	!
[1054]	171	! 1053 2012-11-13 17:11:03Z hoffmann
	172	! +nr, qr, prr, qc and averaged quantities
	173	!
[1037]	174	! 1036 2012-10-22 13:43:42Z raasch
	175	! code put under GPL (PALM 3.9)
	176	!
[1035]	177	! 1031 2012-10-19 14:35:30Z raasch
	178	! netCDF4 without parallel file support implemented
	179	!
[1008]	180	! 1007 2012-09-19 14:30:36Z franke
	181	! Bugfix: missing calculation of ql_vp added
	182	!
[1]	183	! Revision 1.1 1997/09/03 06:29:36 raasch
	184	! Initial revision
	185	!
	186	!
	187	! Description:
	188	! ------------
[1682]	189	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	190	!------------------------------------------------------------------------------!
[1682]	191	SUBROUTINE data_output_3d( av )
	192
[1]	193
[1320]	194	USE arrays_3d, &
[2292]	195	ONLY: e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, rho_ocean, s, &
	196	sa, tend, u, v, vpt, w
[1320]	197
[1]	198	USE averaging
[1320]	199
[2696]	200	USE chemistry_model_mod, &
	201	ONLY: chem_data_output_3d
	202
[1320]	203	USE cloud_parameters, &
[1849]	204	ONLY: l_d_cp, pt_d_t
[1320]	205
	206	USE control_parameters, &
[2696]	207	ONLY: air_chemistry, cloud_physics, do3d, do3d_no, do3d_time_count, &
	208	io_blocks, io_group, land_surface, message_string, &
[2746]	209	ntdim_3d, nz_do3d, plant_canopy, &
[2232]	210	psolver, simulated_time, time_since_reference_point, &
	211	urban_surface, varnamelength
[1320]	212
	213	USE cpulog, &
	214	ONLY: log_point, cpu_log
[2817]	215
	216	USE gust_mod, &
	217	ONLY: gust_data_output_3d, gust_module_enabled
[1320]	218
	219	USE indices, &
[3004]	220	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
	221	nzt, wall_flags_0
[1320]	222
	223	USE kinds
	224
[1551]	225	USE land_surface_model_mod, &
[2232]	226	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	227
[1783]	228	#if defined( __netcdf )
	229	USE NETCDF
	230	#endif
	231
	232	USE netcdf_interface, &
[2696]	233	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
[1783]	234	netcdf_data_format, netcdf_handle_error
[1320]	235
	236	USE particle_attributes, &
[1359]	237	ONLY: grid_particles, number_of_particles, particles, &
	238	particle_advection_start, prt_count
[1320]	239
[1]	240	USE pegrid
	241
[2209]	242	USE plant_canopy_model_mod, &
[2746]	243	ONLY: pcm_data_output_3d
[2209]	244
[1585]	245	USE radiation_model_mod, &
[2696]	246	ONLY: nzub, nzut, radiation, radiation_data_output_3d
[1585]	247
[2696]	248	USE turbulence_closure_mod, &
	249	ONLY: tcm_data_output_3d
	250
[2007]	251	USE urban_surface_mod, &
[2696]	252	ONLY: usm_data_output_3d
[1585]	253
[2007]	254
[1]	255	IMPLICIT NONE
	256
[1682]	257	INTEGER(iwp) :: av !<
[2696]	258	INTEGER(iwp) :: flag_nr !< number of masking flag
[1682]	259	INTEGER(iwp) :: i !<
	260	INTEGER(iwp) :: if !<
	261	INTEGER(iwp) :: j !<
	262	INTEGER(iwp) :: k !<
	263	INTEGER(iwp) :: n !<
	264	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	265	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	266
[1682]	267	LOGICAL :: found !<
	268	LOGICAL :: resorted !<
[1]	269
[1682]	270	REAL(wp) :: mean_r !<
	271	REAL(wp) :: s_r2 !<
	272	REAL(wp) :: s_r3 !<
[1]	273
[1682]	274	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
[1]	275
[1682]	276	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
[1]	277
[2011]	278	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	279
[1]	280	!
	281	!-- Return, if nothing to output
	282	IF ( do3d_no(av) == 0 ) RETURN
	283
	284	CALL cpu_log (log_point(14),'data_output_3d','start')
	285
	286	!
	287	!-- Open output file.
[2512]	288	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
	289	!-- own file and writes the data of its subdomain in binary format. After the
	290	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
[1031]	291	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	292	IF ( netcdf_data_format < 5 ) THEN
[2967]	293	#if defined( __parallel )
[1327]	294	CALL check_open( 30 )
[2967]	295	#endif
[1327]	296	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	297	ELSE
[1327]	298	CALL check_open( 106+av*10 )
[493]	299	ENDIF
[1]	300
	301	!
[1745]	302	!-- For parallel netcdf output the time axis must be limited. Return, if this
	303	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	304	!-- the given end time by the length of the given output interval.
	305	IF ( netcdf_data_format > 4 ) THEN
	306	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
	307	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
	308	simulated_time, '&because the maximum ', &
	309	'number of output time levels is ', &
	310	'exceeded.'
	311	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	312	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	313	RETURN
	314	ENDIF
	315	ENDIF
	316
	317	!
[1031]	318	!-- Update the netCDF time axis
[1308]	319	!-- In case of parallel output, this is only done by PE0 to increase the
	320	!-- performance.
[1]	321	#if defined( __netcdf )
[1308]	322	do3d_time_count(av) = do3d_time_count(av) + 1
	323	IF ( myid == 0 ) THEN
[1327]	324	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	325	(/ time_since_reference_point /), &
	326	start = (/ do3d_time_count(av) /), &
	327	count = (/ 1 /) )
[1783]	328	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	329	ENDIF
	330	#endif
	331
	332	!
	333	!-- Loop over all variables to be written.
	334	if = 1
	335
	336	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
[2007]	337
[1]	338	!
[2007]	339	!-- Temporary solution to account for data output within the new urban
	340	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	341	!-- Store the array chosen on the temporary array.
[2007]	342	trimvar = TRIM( do3d(av,if) )
[2011]	343	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
[2007]	344	trimvar = 'usm_output'
	345	resorted = .TRUE.
	346	nzb_do = nzub
	347	nzt_do = nzut
	348	ELSE
	349	resorted = .FALSE.
	350	nzb_do = nzb
	351	nzt_do = nz_do3d
	352	ENDIF
[1551]	353	!
[1980]	354	!-- Set flag to steer output of radiation, land-surface, or user-defined
	355	!-- quantities
	356	found = .FALSE.
	357	!
[1551]	358	!-- Allocate a temporary array with the desired output dimensions.
[2512]	359	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	360	!
	361	!-- Before each output, set array local_pf to fill value
	362	local_pf = fill_value
	363	!
	364	!-- Set masking flag for topography for not resorted arrays
	365	flag_nr = 0
[1551]	366
[2007]	367	SELECT CASE ( trimvar )
[1]	368
	369	CASE ( 'e' )
	370	IF ( av == 0 ) THEN
	371	to_be_resorted => e
	372	ELSE
[3004]	373	IF ( .NOT. ALLOCATED( e_av ) ) THEN
	374	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	375	e_av = REAL( fill_value, KIND = wp )
	376	ENDIF
[1]	377	to_be_resorted => e_av
	378	ENDIF
	379
[771]	380	CASE ( 'lpt' )
	381	IF ( av == 0 ) THEN
	382	to_be_resorted => pt
	383	ELSE
[3004]	384	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
	385	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	386	lpt_av = REAL( fill_value, KIND = wp )
	387	ENDIF
[771]	388	to_be_resorted => lpt_av
	389	ENDIF
	390
[2292]	391	CASE ( 'nc' )
	392	IF ( av == 0 ) THEN
	393	to_be_resorted => nc
	394	ELSE
[3004]	395	IF ( .NOT. ALLOCATED( nc_av ) ) THEN
	396	ALLOCATE( nc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	397	nc_av = REAL( fill_value, KIND = wp )
	398	ENDIF
[2292]	399	to_be_resorted => nc_av
	400	ENDIF
	401
[1053]	402	CASE ( 'nr' )
	403	IF ( av == 0 ) THEN
	404	to_be_resorted => nr
	405	ELSE
[3004]	406	IF ( .NOT. ALLOCATED( nr_av ) ) THEN
	407	ALLOCATE( nr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	408	nr_av = REAL( fill_value, KIND = wp )
	409	ENDIF
[1053]	410	to_be_resorted => nr_av
	411	ENDIF
	412
[1]	413	CASE ( 'p' )
	414	IF ( av == 0 ) THEN
[727]	415	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	416	to_be_resorted => p
	417	ELSE
[3004]	418	IF ( .NOT. ALLOCATED( p_av ) ) THEN
	419	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	420	p_av = REAL( fill_value, KIND = wp )
	421	ENDIF
[727]	422	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	423	to_be_resorted => p_av
	424	ENDIF
	425
	426	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	427	IF ( av == 0 ) THEN
[1359]	428	IF ( simulated_time >= particle_advection_start ) THEN
	429	tend = prt_count
	430	ELSE
	431	tend = 0.0_wp
	432	ENDIF
[2512]	433	DO i = nxl, nxr
	434	DO j = nys, nyn
[1551]	435	DO k = nzb_do, nzt_do
[1]	436	local_pf(i,j,k) = tend(k,j,i)
	437	ENDDO
	438	ENDDO
	439	ENDDO
	440	resorted = .TRUE.
	441	ELSE
[3004]	442	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
	443	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	444	pc_av = REAL( fill_value, KIND = wp )
	445	ENDIF
[1]	446	to_be_resorted => pc_av
	447	ENDIF
	448
[1359]	449	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	450	IF ( av == 0 ) THEN
[1359]	451	IF ( simulated_time >= particle_advection_start ) THEN
	452	DO i = nxl, nxr
	453	DO j = nys, nyn
[1551]	454	DO k = nzb_do, nzt_do
[1359]	455	number_of_particles = prt_count(k,j,i)
	456	IF (number_of_particles <= 0) CYCLE
	457	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	458	s_r2 = 0.0_wp
	459	s_r3 = 0.0_wp
	460	DO n = 1, number_of_particles
	461	IF ( particles(n)%particle_mask ) THEN
	462	s_r2 = s_r2 + particles(n)%radius*2 &
	463	particles(n)%weight_factor
	464	s_r3 = s_r3 + particles(n)%radius*3 &
	465	particles(n)%weight_factor
	466	ENDIF
	467	ENDDO
	468	IF ( s_r2 > 0.0_wp ) THEN
	469	mean_r = s_r3 / s_r2
	470	ELSE
	471	mean_r = 0.0_wp
	472	ENDIF
	473	tend(k,j,i) = mean_r
[1]	474	ENDDO
	475	ENDDO
	476	ENDDO
[1359]	477	ELSE
	478	tend = 0.0_wp
	479	ENDIF
[2512]	480	DO i = nxl, nxr
	481	DO j = nys, nyn
[1551]	482	DO k = nzb_do, nzt_do
[1]	483	local_pf(i,j,k) = tend(k,j,i)
	484	ENDDO
	485	ENDDO
	486	ENDDO
	487	resorted = .TRUE.
	488	ELSE
[3004]	489	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
	490	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	491	pr_av = REAL( fill_value, KIND = wp )
	492	ENDIF
[1]	493	to_be_resorted => pr_av
	494	ENDIF
	495
[1053]	496	CASE ( 'prr' )
	497	IF ( av == 0 ) THEN
[2512]	498	DO i = nxl, nxr
	499	DO j = nys, nyn
[1822]	500	DO k = nzb_do, nzt_do
[1053]	501	local_pf(i,j,k) = prr(k,j,i)
	502	ENDDO
	503	ENDDO
	504	ENDDO
	505	ELSE
[3004]	506	IF ( .NOT. ALLOCATED( prr_av ) ) THEN
	507	ALLOCATE( prr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	508	prr_av = REAL( fill_value, KIND = wp )
	509	ENDIF
[2512]	510	DO i = nxl, nxr
	511	DO j = nys, nyn
[1822]	512	DO k = nzb_do, nzt_do
[1053]	513	local_pf(i,j,k) = prr_av(k,j,i)
	514	ENDDO
	515	ENDDO
	516	ENDDO
	517	ENDIF
	518	resorted = .TRUE.
	519
[1]	520	CASE ( 'pt' )
	521	IF ( av == 0 ) THEN
	522	IF ( .NOT. cloud_physics ) THEN
	523	to_be_resorted => pt
	524	ELSE
[2512]	525	DO i = nxl, nxr
	526	DO j = nys, nyn
[1551]	527	DO k = nzb_do, nzt_do
[1320]	528	local_pf(i,j,k) = pt(k,j,i) + l_d_cp * &
	529	pt_d_t(k) * &
[1]	530	ql(k,j,i)
	531	ENDDO
	532	ENDDO
	533	ENDDO
	534	resorted = .TRUE.
	535	ENDIF
	536	ELSE
[3004]	537	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
	538	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	539	pt_av = REAL( fill_value, KIND = wp )
	540	ENDIF
[1]	541	to_be_resorted => pt_av
	542	ENDIF
	543
	544	CASE ( 'q' )
	545	IF ( av == 0 ) THEN
	546	to_be_resorted => q
	547	ELSE
[3004]	548	IF ( .NOT. ALLOCATED( q_av ) ) THEN
	549	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	550	q_av = REAL( fill_value, KIND = wp )
	551	ENDIF
[1]	552	to_be_resorted => q_av
	553	ENDIF
[691]	554
[1053]	555	CASE ( 'qc' )
[1]	556	IF ( av == 0 ) THEN
[1115]	557	to_be_resorted => qc
[1]	558	ELSE
[3004]	559	IF ( .NOT. ALLOCATED( qc_av ) ) THEN
	560	ALLOCATE( qc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	561	qc_av = REAL( fill_value, KIND = wp )
	562	ENDIF
[1115]	563	to_be_resorted => qc_av
[1]	564	ENDIF
	565
[1053]	566	CASE ( 'ql' )
	567	IF ( av == 0 ) THEN
[1115]	568	to_be_resorted => ql
[1053]	569	ELSE
[3004]	570	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
	571	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	572	ql_av = REAL( fill_value, KIND = wp )
	573	ENDIF
[1115]	574	to_be_resorted => ql_av
[1053]	575	ENDIF
	576
[1]	577	CASE ( 'ql_c' )
	578	IF ( av == 0 ) THEN
	579	to_be_resorted => ql_c
	580	ELSE
[3004]	581	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
	582	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	583	ql_c_av = REAL( fill_value, KIND = wp )
	584	ENDIF
[1]	585	to_be_resorted => ql_c_av
	586	ENDIF
	587
	588	CASE ( 'ql_v' )
	589	IF ( av == 0 ) THEN
	590	to_be_resorted => ql_v
	591	ELSE
[3004]	592	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
	593	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	594	ql_v_av = REAL( fill_value, KIND = wp )
	595	ENDIF
[1]	596	to_be_resorted => ql_v_av
	597	ENDIF
	598
	599	CASE ( 'ql_vp' )
	600	IF ( av == 0 ) THEN
[1359]	601	IF ( simulated_time >= particle_advection_start ) THEN
	602	DO i = nxl, nxr
	603	DO j = nys, nyn
[1551]	604	DO k = nzb_do, nzt_do
[1359]	605	number_of_particles = prt_count(k,j,i)
	606	IF (number_of_particles <= 0) CYCLE
	607	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	608	DO n = 1, number_of_particles
	609	IF ( particles(n)%particle_mask ) THEN
	610	tend(k,j,i) = tend(k,j,i) + &
	611	particles(n)%weight_factor / &
	612	prt_count(k,j,i)
	613	ENDIF
	614	ENDDO
[1007]	615	ENDDO
	616	ENDDO
	617	ENDDO
[1359]	618	ELSE
	619	tend = 0.0_wp
	620	ENDIF
[2512]	621	DO i = nxl, nxr
	622	DO j = nys, nyn
[1551]	623	DO k = nzb_do, nzt_do
[1007]	624	local_pf(i,j,k) = tend(k,j,i)
	625	ENDDO
	626	ENDDO
	627	ENDDO
	628	resorted = .TRUE.
[1]	629	ELSE
[3004]	630	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
	631	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	632	ql_vp_av = REAL( fill_value, KIND = wp )
	633	ENDIF
[1]	634	to_be_resorted => ql_vp_av
	635	ENDIF
	636
[1053]	637	CASE ( 'qr' )
	638	IF ( av == 0 ) THEN
	639	to_be_resorted => qr
	640	ELSE
[3004]	641	IF ( .NOT. ALLOCATED( qr_av ) ) THEN
	642	ALLOCATE( qr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	643	qr_av = REAL( fill_value, KIND = wp )
	644	ENDIF
[1053]	645	to_be_resorted => qr_av
	646	ENDIF
	647
[1]	648	CASE ( 'qv' )
	649	IF ( av == 0 ) THEN
[2512]	650	DO i = nxl, nxr
	651	DO j = nys, nyn
[1551]	652	DO k = nzb_do, nzt_do
[1]	653	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	654	ENDDO
	655	ENDDO
	656	ENDDO
	657	resorted = .TRUE.
	658	ELSE
[3004]	659	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
	660	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	661	qv_av = REAL( fill_value, KIND = wp )
	662	ENDIF
[1]	663	to_be_resorted => qv_av
	664	ENDIF
	665
[2031]	666	CASE ( 'rho_ocean' )
[96]	667	IF ( av == 0 ) THEN
[2031]	668	to_be_resorted => rho_ocean
[96]	669	ELSE
[3004]	670	IF ( .NOT. ALLOCATED( rho_ocean_av ) ) THEN
	671	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	672	u_av = REAL( fill_value, KIND = wp )
	673	ENDIF
[2031]	674	to_be_resorted => rho_ocean_av
[96]	675	ENDIF
[691]	676
[1]	677	CASE ( 's' )
	678	IF ( av == 0 ) THEN
[1960]	679	to_be_resorted => s
[1]	680	ELSE
[3004]	681	IF ( .NOT. ALLOCATED( s_av ) ) THEN
	682	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	683	s_av = REAL( fill_value, KIND = wp )
	684	ENDIF
[355]	685	to_be_resorted => s_av
[1]	686	ENDIF
[691]	687
[96]	688	CASE ( 'sa' )
	689	IF ( av == 0 ) THEN
	690	to_be_resorted => sa
	691	ELSE
[3004]	692	IF ( .NOT. ALLOCATED( sa_av ) ) THEN
	693	ALLOCATE( sa_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	694	sa_av = REAL( fill_value, KIND = wp )
	695	ENDIF
[96]	696	to_be_resorted => sa_av
	697	ENDIF
[691]	698
[1]	699	CASE ( 'u' )
[2696]	700	flag_nr = 1
[1]	701	IF ( av == 0 ) THEN
	702	to_be_resorted => u
	703	ELSE
[3004]	704	IF ( .NOT. ALLOCATED( u_av ) ) THEN
	705	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	706	u_av = REAL( fill_value, KIND = wp )
	707	ENDIF
[1]	708	to_be_resorted => u_av
	709	ENDIF
	710
	711	CASE ( 'v' )
[2696]	712	flag_nr = 2
[1]	713	IF ( av == 0 ) THEN
	714	to_be_resorted => v
	715	ELSE
[3004]	716	IF ( .NOT. ALLOCATED( v_av ) ) THEN
	717	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	718	v_av = REAL( fill_value, KIND = wp )
	719	ENDIF
[1]	720	to_be_resorted => v_av
	721	ENDIF
	722
	723	CASE ( 'vpt' )
	724	IF ( av == 0 ) THEN
	725	to_be_resorted => vpt
	726	ELSE
[3004]	727	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
	728	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	729	vpt_av = REAL( fill_value, KIND = wp )
	730	ENDIF
[1]	731	to_be_resorted => vpt_av
	732	ENDIF
	733
	734	CASE ( 'w' )
[2696]	735	flag_nr = 3
[1]	736	IF ( av == 0 ) THEN
	737	to_be_resorted => w
	738	ELSE
[3004]	739	IF ( .NOT. ALLOCATED( w_av ) ) THEN
	740	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	741	w_av = REAL( fill_value, KIND = wp )
	742	ENDIF
[1]	743	to_be_resorted => w_av
	744	ENDIF
[2007]	745	!
	746	!-- Block of urban surface model outputs
	747	CASE ( 'usm_output' )
	748	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
	749	nzb_do, nzt_do )
[1]	750
	751	CASE DEFAULT
[1972]	752
[1]	753	!
[1972]	754	!-- Land surface quantity
	755	IF ( land_surface ) THEN
	756	!
	757	!-- For soil model quantities, it is required to re-allocate local_pf
	758	nzb_do = nzb_soil
	759	nzt_do = nzt_soil
	760
	761	DEALLOCATE ( local_pf )
[2512]	762	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	763	local_pf = fill_value
[1972]	764
	765	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
	766	resorted = .TRUE.
[1976]	767
	768	!
	769	!-- If no soil model variable was found, re-allocate local_pf
	770	IF ( .NOT. found ) THEN
	771	nzb_do = nzb
	772	nzt_do = nz_do3d
	773
	774	DEALLOCATE ( local_pf )
[2512]	775	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	776	ENDIF
	777
[1972]	778	ENDIF
	779
[2696]	780	IF ( .NOT. found ) THEN
	781	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf )
	782	resorted = .TRUE.
	783	ENDIF
	784
[1972]	785	!
[1976]	786	!-- Radiation quantity
	787	IF ( .NOT. found .AND. radiation ) THEN
	788	CALL radiation_data_output_3d( av, do3d(av,if), found, &
	789	local_pf )
	790	resorted = .TRUE.
	791	ENDIF
	792
	793	!
[2817]	794	!-- Gust module quantities
	795	IF ( .NOT. found .AND. gust_module_enabled ) THEN
	796	CALL gust_data_output_3d( av, do3d(av,if), found, local_pf, &
	797	nzb_do, nzt_do )
	798	resorted = .TRUE.
	799	ENDIF
	800
	801	!
[2696]	802	!-- Chemistry model output
	803	IF ( .NOT. found .AND. air_chemistry ) THEN
	804	CALL chem_data_output_3d( av, do3d(av,if), found, &
[2756]	805	local_pf, fill_value )
[2696]	806	resorted = .TRUE.
	807	ENDIF
	808
	809	!
[2209]	810	!-- Plant canopy model output
	811	IF ( .NOT. found .AND. plant_canopy ) THEN
[2696]	812	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	813	fill_value )
[2209]	814	resorted = .TRUE.
	815	ENDIF
	816
	817	!
[1]	818	!-- User defined quantity
[1972]	819	IF ( .NOT. found ) THEN
	820	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
	821	nzb_do, nzt_do )
	822	resorted = .TRUE.
	823	ENDIF
[1]	824
[254]	825	IF ( .NOT. found ) THEN
[1320]	826	message_string = 'no output available for: ' // &
[274]	827	TRIM( do3d(av,if) )
[254]	828	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	829	ENDIF
	830
	831	END SELECT
	832
	833	!
	834	!-- Resort the array to be output, if not done above
	835	IF ( .NOT. resorted ) THEN
[2512]	836	DO i = nxl, nxr
	837	DO j = nys, nyn
[1551]	838	DO k = nzb_do, nzt_do
[2696]	839	local_pf(i,j,k) = MERGE( &
	840	to_be_resorted(k,j,i), &
	841	REAL( fill_value, KIND = wp ), &
	842	BTEST( wall_flags_0(k,j,i), flag_nr ) )
[1]	843	ENDDO
	844	ENDDO
	845	ENDDO
	846	ENDIF
	847
	848	!
[1327]	849	!-- Output of the 3D-array
	850	#if defined( __parallel )
	851	IF ( netcdf_data_format < 5 ) THEN
[1]	852	!
[1327]	853	!-- Non-parallel netCDF output. Data is output in parallel in
	854	!-- FORTRAN binary format here, and later collected into one file by
	855	!-- combine_plot_fields
	856	IF ( myid == 0 ) THEN
	857	WRITE ( 30 ) time_since_reference_point, &
	858	do3d_time_count(av), av
[1]	859	ENDIF
[1327]	860	DO i = 0, io_blocks-1
	861	IF ( i == io_group ) THEN
[2512]	862	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[1551]	863	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	864	ENDIF
[1972]	865
[1327]	866	CALL MPI_BARRIER( comm2d, ierr )
[1972]	867
[1327]	868	ENDDO
[559]	869
[1327]	870	ELSE
[646]	871	#if defined( __netcdf )
[493]	872	!
[1327]	873	!-- Parallel output in netCDF4/HDF5 format.
[2512]	874	! IF ( nxr == nx .AND. nyn /= ny ) THEN
	875	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	876	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	877	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	878	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	879	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
	880	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	881	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	882	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	883	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	884	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
	885	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	886	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	887	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	888	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	889	! ELSE
[1327]	890	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	891	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	892	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	893	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[2512]	894	! ENDIF
[1783]	895	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	896	#endif
[1327]	897	ENDIF
[1]	898	#else
	899	#if defined( __netcdf )
[1327]	900	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	901	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	902	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[2512]	903	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	904	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	905	#endif
	906	#endif
	907
	908	if = if + 1
	909
	910	!
[1551]	911	!-- Deallocate temporary array
	912	DEALLOCATE ( local_pf )
[1]	913
[1551]	914	ENDDO
[1]	915
[1318]	916	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	917
	918	!
	919	!-- Formats.
[1320]	920	3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ &
[1]	921	'label = ',A,A)
	922
	923	END SUBROUTINE data_output_3d

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