Home

Context Navigation

source: palm/trunk/SCRIPTS/subjob @ 2481

Last change on this file since 2481 was 2365, checked in by kanani, 7 years ago
Vertical nesting implemented (SadiqHuq?)
Property svn:keywords set to `Id Rev`
File size: 59.7 KB

Rev	Line
[1841]	1	#!/bin/bash
[1090]	2
	3	# subjob - script for automatic generation and submission of batch-job files
	4	# for various batch queuing systems
	5
[1046]	6	#--------------------------------------------------------------------------------#
	7	# This file is part of PALM.
	8	#
	9	# PALM is free software: you can redistribute it and/or modify it under the terms
	10	# of the GNU General Public License as published by the Free Software Foundation,
	11	# either version 3 of the License, or (at your option) any later version.
	12	#
	13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	16	#
	17	# You should have received a copy of the GNU General Public License along with
	18	# PALM. If not, see <http://www.gnu.org/licenses/>.
	19	#
[1310]	20	# Copyright 1997-2014 Leibniz Universitaet Hannover
[1046]	21	#--------------------------------------------------------------------------------#
	22	#
	23	# Current revisions:
[1090]	24	# ------------------
[1351]	25	#
[2188]	26	#
[1046]	27	# Former revisions:
	28	# -----------------
[169]	29	# $Id: subjob 2365 2017-08-21 14:59:59Z raasch $
[2365]	30	# Added lckea & lckeam. KIT/IMK-IFU Garmisch cluster. LRZ (SadiqHuq)
	31	#
	32	# 2295 2017-06-27 14:25:52Z raasch
[2295]	33	# adjustments for using lcgeohu (cirrus @ HUB)
	34	#
	35	# 2266 2017-06-09 09:27:21Z raasch
[2266]	36	# nech related parts removed
	37	#
	38	# 2257 2017-06-07 14:07:05Z witha
[2257]	39	# adjustments for lceddy, removed lcflow-specific code
	40	#
	41	# 2188 2017-03-21 06:42:42Z raasch
[1623]	42	#
[2188]	43	# 2187 2017-03-21 06:41:25Z raasch
	44	# adjustment of compute node names for lckyuh
	45	#
[2186]	46	# 2184 2017-03-21 04:31:22Z raasch
	47	# bugfix: localhost renamed local_host
	48	#
[2150]	49	# 2148 2017-02-09 16:56:42Z scharf
	50	# added kuma and gharbi to the list of known hosts
	51	#
[2135]	52	# 2134 2017-02-02 07:33:46Z raasch
	53	# option -E added to msub commands on HLRN-III machines to allow output of more
	54	# job informations in the job protocol files
	55	#
[1945]	56	# 1944 2016-06-15 06:29:00Z raasch
	57	# adjustments for using HLRN ssh-keys
	58	#
[1941]	59	# 1940 2016-06-14 05:15:20Z raasch
	60	# adjustments for lckiaps
	61	#
[1867]	62	# 1866 2016-04-15 06:50:59Z raasch
	63	# adjusted for lcocean
	64	#
[1842]	65	# 1841 2016-04-07 19:14:06Z raasch
	66	# script now running under bash
	67	#
[1702]	68	# 1701 2015-11-02 07:43:04Z maronga
	69	# Bugfix: added missing init_cmds for lccrayh/lccrayb
	70	#
[1623]	71	# 1621 2015-07-17 11:39:33Z heinze
[1621]	72	# adjustments for Mistral at DKRZ Hamburg (lcbullhh)
[1200]	73	#
[1576]	74	# 1575 2015-03-27 09:56:27Z raasch
	75	# mpp2-queues added to lccrayh
	76	#
[1548]	77	# 1547 2015-01-29 15:09:12Z witha
	78	# adjustments for ForWind computing cluster (lcflow)
	79	#
[1546]	80	# 1545 2015-01-29 06:52:23Z heinze
	81	# local host name for blizzard further specified
	82	#
[1481]	83	# 1480 2014-10-17 14:41:49Z raasch
	84	# adjustments for 2nd stage of HLRNIII
	85	#
[1469]	86	# 1468 2014-09-24 14:06:57Z maronga
	87	# Typo removed (addres->address)
	88	# Adjustments for lcxe6
	89	#
[1453]	90	# 1452 2014-08-22 09:41:06Z heinze
	91	# local hosts for blizzard added
	92	#
[1451]	93	# 1450 2014-08-21 07:31:51Z heinze
	94	# HLRN-III (lccrayb): testq queue adjusted to mpp1testq
	95	#
[1443]	96	# 1442 2014-07-28 07:09:10Z raasch
	97	# HLRN-III (lccrayb/lccrayh) queues adjusted
	98	#
[1379]	99	# 1378 2014-04-28 06:04:58Z raasch
	100	# -et option added for lctit
	101	#
[1351]	102	# 1350 2014-04-04 13:01:30Z maronga
	103	# location of qsub updated for lcxe6
	104	#
[1290]	105	# 1289 2014-03-04 07:12:34Z raasch
	106	# German comments translated to English
	107	# fimm-, necriam-, scirocco-, ibmy-, and sgi-specific code removed
	108	#
[1280]	109	# 1279 2014-01-28 12:10:14Z raasch
	110	# node calculation modified due to changes in mrun (tasks_per_node must not be
	111	# an integral divisor of numprocs any more)
	112	#
[1275]	113	# 1274 2014-01-09 13:14:54Z heinze
	114	# adjustments for lccrayh
	115	#
[1267]	116	# 1266 2013-12-11 12:07:34Z heinze
	117	# further adjustments for lccrayb (use msub instead of qsub)
	118	#
[1265]	119	# 1264 2013-12-09 12:46:09Z fricke
	120	# Bugfix: Using number of nodes instead of number of processors (lccrayb)
	121	#
[1263]	122	# 1262 2013-12-09 10:57:20Z fricke
	123	# further adjustments for lccrayb
	124	#
[1261]	125	# 1260 2013-12-04 12:48:04Z raasch
	126	# jaboticaba admitted
	127	#
[1256]	128	# 1255 2013-11-07 14:43:35Z raasch
	129	# further adjustments for lccrayb
	130	#
[1225]	131	# 1224 2013-09-16 07:27:23Z raasch
	132	# first adjustments for lccrayb
	133	#
[1203]	134	# 1202 2013-07-10 16:22:07Z witha
	135	# adjustments for Forwind cluster (lcflow)
	136	#
[1200]	137	# 1199 2013-07-05 14:52:22Z raasch
	138	# adjustments for CSC Helsinki (lccrayf)
	139	#
[1185]	140	# use of cluster/express queue enabled (ibmh)
	141	# vinessa added (imuk)
[1047]	142	#
[1104]	143	# 1103 2013-02-20 02:15:53Z raasch
	144	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
	145	# instead typeset -L/R),
	146	# further adjustments for lckyuh
	147	#
[1100]	148	# 2013-02-10 01:47:43Z raasch
	149	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
	150	# and for Forwind cluster (lcflow)
	151	#
[1096]	152	# 1094 2013-02-03 01:52:12Z raasch
	153	# new option -P for explicit setting of ssh/scp port,
	154	# decalpha parts (yonsei) removed
	155	#
[1091]	156	# 2013-02-02 07:06:13Z raasch
[1099]	157	# adjustments for Kyushu-University computing center (lckyut - tatara)
[1091]	158	# old changelog messages removed
	159	#
[1047]	160	# 1046 2012-11-09 14:38:45Z maronga
	161	# code put under GPL (PALM 3.9)
	162	#
[1090]	163	# 08/07/94 - Siggi - first version finished
	164	# 29/06/94 - Siggi - script development started
	165	#--------------------------------------------------------------------------------#
	166	# subjob - script for automatic generation and submission of batch-job files
	167	# for various batch queuing systems
	168	#--------------------------------------------------------------------------------#
[1]	169
	170
[1289]	171	# VARIABLE-DECLARATIONS AND DEFAULT VALUES
[352]	172	delete_dayfile=false
[799]	173	email_notification=none
[122]	174	group_number=none
[1]	175	locat=normal
	176	no_default_queue=none
	177	no_submit=false
	178	job_catalog="~/job_queue"
	179	job_name=none
	180	local_user=$LOGNAME
	181	node_usage=shared
[475]	182	numprocs=0
[1]	183	punkte="..........................................................."
	184	submcom=qsub
	185	queue=default
	186	remote_host=none
	187	remote_user=""
	188	verify=true
	189
	190	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
[1779]	191	typeset -i numprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
[1]	192
	193
	194
[1289]	195	# ERROR HANDLING
	196	# IN CASE OF EXIT:
[1]	197	trap 'if [[ $locat != normal ]]
	198	then
	199	case $locat in
	200	(option) printf "\n --> available optios can be displayed"
	201	printf " by typing:"
	202	printf "\n \"subjob ?\" \n";;
	203	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
	204	(*) printf "\n +++ unknown error"
	205	printf "\n please inform S. Raasch!\n"
	206	esac
	207	[[ -f $job_to_send ]] && rm $job_to_send
	208	printf "\n\n+++ SUBJOB killed \n\n"
	209	fi' exit
	210
	211
[1289]	212	# IN CASE OF TERMINAL-BREAK:
[1]	213	trap '[[ -f $job_to_send ]] && rm $job_to_send
	214	printf "\n\n+++ SUBJOB killed \n\n"
	215	exit
	216	' 2
	217
	218
[1289]	219	# DETERMINE NAME OF LOCAL HOST
[1]	220	local_host=$(hostname)
	221
[1289]	222	# SET HOST-SPECIFIC VARIABLES VEREINBAREN (CHECK, IF LOCAL HOST
	223	# IS ADMITTED AT ALL)
	224	# NOTE: ONE OF THE ENTRIES FOR "lck" OR "lckordi" ALWAYS HAS TO BE
	225	# COMMENT OUT, BECAUSE THE HOSTNAME (node*) IS SAME FOR BOTH MACHINES
[1]	226	case $local_host in
[1468]	227	(ambiel-lx) local_address=134.106.74.48; local_host=lcfor;;
	228	(atmos) local_address=172.20.25.35; local_host=lcide;;
	229	(austru) local_address=130.75.105.128; local_host=lcmuk;;
	230	(autan) local_address=130.75.105.57; local_host=lcmuk;;
	231	(bora) local_address=130.75.105.103; local_host=lcmuk;;
[2187]	232	(a0\|b0) local_address=133.5.4.33; local_host=lckyuh;;
[1545]	233	(blizzard1\|p0\|p1\|p2\|p3\|p4\|p5\|p6\|p7\|p8\|p9) local_address=136.172.40.15; local_host=ibmh;;
	234	(blizzard2\|p0\|p1\|p2\|p3\|p4\|p5\|p6\|p7\|p8\|p9) local_address=136.172.40.16; local_host=ibmh;;
[1468]	235	(blogin\|bxc) local_address=130.73.233.1; local_host=lccrayb;;
	236	(hlogin\|hxc) local_address=130.75.4.1; local_host=lccrayh;;
	237	(breva) local_address=130.75.105.98; local_host=lcmuk;;
	238	(buran) local_address=130.75.105.58; local_host=lcmuk;;
	239	(caurus) local_address=130.75.105.19; local_host=lcmuk;;
	240	(climate*) local_address=165.132.26.68; local_host=lcyon;;
	241	(clogin*) local_address=86.50.166.21; local_host=lccrayf;;
	242	(elephanta) local_address=130.75.105.6; local_host=lcmuk;;
[2257]	243	(hpcl*) local_address=eddy.hpc.uni-oldenburg.de; local_host=lceddy;;
	244	(cfd*) local_address=eddy.hpc.uni-oldenburg.de; local_host=lceddy;;
[1468]	245	(node*) local_address=165.132.26.61 local_host=lck;;
	246	# (node*) local_address=210.219.61.8 local_host=lckordi;;
	247	(gaia*) local_address=150.183.146.24; local_host=ibmkisti;;
[2147]	248	(gharbi) local_address=130.75.105.47; local_host=lcmuk;;
[1468]	249	(gallego) local_address=130.75.105.10; local_host=lcmuk;;
	250	(gregale) local_address=130.75.105.109; local_host=lcmuk;;
	251	(hababai) local_address=130.75.105.108; local_host=lcmuk;;
	252	(hayaka*) local_address=133.5.4.33; local_host=lckyuh;;
	253	(hexagon.bccs.uib.no) local_address=129.177.20.113; local_host=lcxe6;;
	254	(hx*) local_address=133.3.51.11; local_host=lckyoto;;
	255	(inferno) local_address=130.75.105.5; local_host=lcmuk;;
	256	(irifi) local_address=130.75.105.104; local_host=lcmuk;;
[2365]	257	# (i*) local_address=129.187.11.197; local_host=ibmmuc;;
[1468]	258	(jaboticaba) local_address=150.163.25.181; local_host=lcbr;;
[2365]	259	(kea*) local_address=172.27.80.109; local_host=lckeal;;
[1468]	260	(sno) local_address=130.75.105.113; local_host=lcmuk;;
[2147]	261	(kuma) local_address=130.75.105.115; local_host=lcmuk;;
[1468]	262	(levanto) local_address=130.75.105.45; local_host=lcmuk;;
[1940]	263	(login*) local_address=118.128.66.201; local_host=lckiaps;;
[2365]	264	# (login*) local_address=129.187.11.197; local_host=ibmmuc;;
	265	(lm*) local_address=129.187.11.197; local_host=ibmmuc;;
	266	(lx*) local_address=129.187.20.240; local_host=lclrz;;
	267	(mpp2*) local_address=129.187.20.105; local_host=lclrz;;
[1468]	268	(maestro) local_address=130.75.105.2; local_host=lcmuk;;
	269	(meller) local_address=134.106.74.155; local_host=lcfor;;
	270	(meteo-login*) local_address=193.166.211.144;local_host=lcxt5m;;
[1620]	271	(mlogin1\|m1) local_address=136.172.50.13; local_host=lcbullhh;;
[1468]	272	(hexagon*) local_address=129.177.20.113; local_host=lcxe6;;
	273	(nobel*) local_address=150.183.5.101; local_host=ibms;;
[1866]	274	(ocean) local_address="ocean"; local_host=lcocean;;
[1468]	275	(orkan) local_address=130.75.105.3; local_host=lcmuk;;
	276	(ostria) local_address=130.75.105.106; local_host=lcmuk;;
	277	(paesano) local_address=130.75.105.46; local_host=lcmuk;;
	278	(pcj*) local_address=172.31.120.1; local_host=lckyut;;
	279	(pingui) local_address=134.106.74.118; local_host=lcfor;;
	280	(quanero) local_address=130.75.105.107; local_host=lcmuk;;
	281	(rte*) local_address=133.5.185.60; local_host=lcrte;;
[1866]	282	(schultzl-Latitude-E6540) local_address="schultzl-Latitude-E6540"; local_host=lcsch;;
[1468]	283	(shiokaze-lx) local_address=134.106.74.123; local_host=lcfor;;
	284	(sisu-login*) local_address=86.50.166.21; local_host=lccrayf;;
	285	(solano) local_address=130.75.105.110; local_host=lcmuk;;
	286	(sugoka*) local_address=172.31.120.1; local_host=lckyut;;
[1866]	287	(tc*) local_address="ocean"; local_host=lcocean;;
[1468]	288	(t2a*) local_address=10.1.6.165; local_host=lctit;;
[2365]	289	(uc1n*) local_address=129.13.82.89; local_host=lcbwuni;;
[1468]	290	(urban*) local_address=147.46.30.151 local_host=lcsb;;
	291	(vinessa) local_address=130.75.105.112; local_host=lcmuk;;
	292	(vorias) local_address=172.20.25.43; local_host=lcmuk;;
	293	(*.cc.kyushu-u.ac.jp) local_address=133.5.4.129; local_host=ibmku;;
[2295]	294	(*.cluster) local_address=192.168.1.254; local_host=lcgeohu;;
[1]	295	(*) printf "\n +++ \"$local_host\" unknown";
[1255]	296	printf "\n please contact the PALM group at IMUK";
[1]	297	locat=parameter; exit;;
	298	esac
	299
	300
	301
[1289]	302	# BY DEFAULT, THE REMOTE HOST IS THE LOCAL HOST
[1]	303	remote_host=$local_host
	304
	305
	306
	307
[1289]	308	# READ THE SHELLSCRIPT-OPTIONS
[1094]	309	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
[1]	310	do
	311	case $option in
	312	(c) job_catalog=$OPTARG;;
	313	(d) delete_dayfile=true;;
	314	(D) no_submit=true;;
[352]	315	(e) email_notification=$OPTARG;;
[125]	316	(g) group_number=$OPTARG;;
[1]	317	(h) remote_host=$OPTARG;;
	318	(m) memory=$OPTARG;;
	319	(n) job_name=$OPTARG;;
	320	(N) node_usage=$OPTARG;;
	321	(O) threads_per_task=$OPTARG;;
[1094]	322	(P) scp_port=$OPTARG;;
[1]	323	(q) no_default_queue=$OPTARG;;
	324	(t) cputime=$OPTARG;;
	325	(T) tasks_per_node=$OPTARG;;
	326	(u) remote_user=$OPTARG;;
	327	(v) verify=false;;
	328	(X) numprocs=$OPTARG;;
	329	(\?) printf "\n +++ Option $OPTARG unknown \n";
	330	locat=option; exit;;
	331	esac
	332	done
	333
	334
[1289]	335	# GET THE NAME OF THE JOBFILE AS NEXT ARGUMENT
[1103]	336	(( to_shift = $OPTIND - 1 ))
	337	shift $to_shift; file_to_send=$1
[1]	338
	339
[1289]	340	# OUTPUT OF SHORT DESCRIPTION OF SCRIPT-OPTIONS
[1]	341	if [ "$1" = "?" ]
	342	then
	343	(printf "\n *** subjob can be called as follows:\n"
	344	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
	345	printf "\n Description of available options:\n"
	346	printf "\n Option Description Default-Value"
	347	printf "\n -c job-input- and output-catalog ~/job_queue"
	348	printf "\n -d no job-protocol will be created ---"
	349	printf "\n -D only the job-file will be created ---"
	350	printf "\n -h execution host, available hosts: $remote_host"
[1289]	351	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, lc...,"
[2266]	352	printf "\n lckiaps, lctit"
[1]	353	printf "\n -m memory demand per process in MByte ---"
	354	printf "\n -n jobname <jobdatei>"
	355	printf "\n -O threads per task (for OpenMP usage) 1"
[1094]	356	printf "\n -P ssh/scp port default port"
[1]	357	printf "\n -q job-queue to be used default"
	358	printf "\n -t allowed cpu-time in seconds ---"
	359	printf "\n -T tasks per node (on parallel hosts) ---"
	360	printf "\n -u username on execution host from .netrc"
	361	printf "\n -v no prompt for confirmation ---"
	362	printf "\n -X # of processors (on parallel hosts) 1"
	363	printf "\n "
	364	printf "\n The only possible positional parameter is <jobfile>:"
	365	printf "\n The complete NQS-job must be provided here."
	366	printf "\n <jobfile>=? creates this outline\n\n") \| more
	367	exit
	368	fi
	369
	370
	371
[1289]	372	# CHECK, IF JOB-FILE HAS BEEN GIVEN AS ARGUMENT AND IF THE FILE ITSELF EXISTS
[1]	373	if [[ "$file_to_send" = "" ]]
	374	then
	375	printf "\n +++ job-file missing"
	376	locat=parameter; exit
	377	else
	378	if [[ -f $file_to_send ]]
	379	then
	380	true
	381	else
	382	printf "\n +++ job-file: "
	383	printf "\n $file_to_send"
	384	printf "\n does not exist"
	385	locat=parameter; exit
	386	fi
	387	fi
	388
	389
	390
[1289]	391	# IF NO JOBNAME HAS BEEN GIVEN, JOBNAME IS SET TO THE NAME OF THE JOB-FILE,
	392	# PROVIDED THAT THE JOB-FILE NAME DOES NOT CONTAIN ANY PATH
[1]	393	if [[ $job_name = none ]]
	394	then
	395	job_name=$file_to_send
	396	fi
	397	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
	398	then
	399	printf "\n +++ job-file name: "
	400	printf "\n $job_name"
	401	printf "\n must not contain \"/\"-characters"
	402	locat=parameter; exit
	403	fi
	404
	405
	406
	407
[1289]	408	# SET HOST-SPECIFIC QUANTITIES, OR TERMINATE IN CASE OF UNKNOWN HOST,
	409	# OR IF NO HOST HAS BEEN GIVEN
[1]	410	if [[ $remote_host = none ]]
	411	then
	412	printf "\n +++ host missing"
	413	locat=option; exit
	414	else
	415	case $remote_host in
[1468]	416	(ibm) queue=p690_standard; remote_address=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	417	(ibmh) queue=cluster; remote_address=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	418	(ibmkisti) queue=class.32plus; remote_address=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	419	(ibmku) queue=s4; remote_address=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
	420	(ibms) queue=p_normal; remote_address=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[2365]	421	(ibmmuc) remote_address=129.187.11.197; submcom=/usr/bin/llsubmit;;
	422	(lcbwuni) queue=develop; remote_address=129.13.82.89; submcom=/opt/moab/bin/msub;;
[1620]	423	(lcbullhh) queue=compute; remote_address=136.172.50.13; submcom=/usr/bin/sbatch;;
[2134]	424	(lccrayb) queue=mpp1testq; remote_address=130.73.233.1; submcom="/opt/moab/default/bin/msub -E";;
	425	(lccrayh) queue=mpp1testq; remote_address=130.75.4.1; submcom="/opt/moab/default/bin/msub -E";;
[1468]	426	(lccrayf) queue=small; remote_address=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
[2257]	427	(lceddy) remote_address=eddy.hpc.uni-oldenburg.de; submcom=sbatch;;
[2295]	428	(lcgeohu) remote_address=cirrus.geo.hu-berlin.de; submcom=sbatch;;
[1468]	429	(lckyoto) remote_address=133.3.51.11; submcom=/thin/local/bin/qsub;;
	430	(lck) remote_address=165.132.26.61; submcom=/usr/torque/bin/qsub;;
[2365]	431	(lckeal) queue=ivy; remote_address=172.27.80.109; submcom=/usr/bin/sbatch;;
[1940]	432	(lckiaps) remote_address=118.128.66.201; submcom=/opt/pbs/default/bin/qsub;;
[1468]	433	(lckordi) remote_address=210.219.61.8; submcom=/usr/torque/bin/qsub;;
	434	(lckyuh) remote_address=133.5.4.33; submcom=/usr/bin/pjsub;;
	435	(lckyut) remote_address=133.5.4.37; submcom=/usr/bin/pjsub;;
[2365]	436	(lclrz) remote_address=129.187.20.240; submcom=/usr/bin/sbatch;;
[1866]	437	(lcocean) remote_address="ocean"; submcom=qsub;;
[1468]	438	(lcsb) remote_address=147.46.30.151; submcom=/usr/torque/bin/qsub;;
	439	(lctit) queue=S; remote_address=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
	440	(lcxe6) remote_address=129.177.20.113; submcom=/opt/torque/default/bin/qsub;;
	441	(lcxt5m) remote_address=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
	442	(lcyon) remote_address=165.132.26.68; submcom=/usr/torque/bin/qsub;;
[251]	443	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
	444	locat=parameter; exit;;
[1]	445	esac
	446	fi
	447
	448
[1289]	449	# CHECK, IF A VALID QUEUE HAS BEEN GIVEN
[1]	450	if [[ $no_default_queue != none ]]
	451	then
	452	error=false
	453	ndq=$no_default_queue
	454	case $remote_host in
	455	(ibm) case $ndq in
	456	(p690_express\|p690_standard\|p690_long) error=false;;
	457	(*) error=true;;
	458	esac;;
	459	(ibmh) case $ndq in
[1184]	460	(cluster\|express) error=false;;
[1]	461	(*) error=true;;
	462	esac;;
[693]	463	(ibmkisti) case $ndq in
	464	(class.32plus\|class.1-2\|class.2-32) error=false;;
	465	(*) error=true;;
	466	esac;;
[622]	467	(ibmku) case $ndq in
	468	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
	469	(*) error=true;;
	470	esac;;
[1]	471	(ibms) case $ndq in
	472	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
	473	(*) error=true;;
	474	esac;;
[2365]	475	(ibmmuc*) case $ndq in
	476	(test\|micro\|general\|large\|fat\|fattest\|special\|tmp1\|tmp2) error=false;;
	477	(*) error=true;;
	478	esac;;
[1620]	479	(lcbullhh) case $ndq in
[2147]	480	(compute\|compute2\|shared) error=false;;
[1620]	481	(*) error=true;;
	482	esac;;
[2365]	483	(lcbwuni) case $ndq in
	484	(develop\|singlenode\|multinode\|verylong\|fat) error=false;;
	485	(*) error=true;;
	486	esac;;
[1224]	487	(lccrayb) case $ndq in
[1480]	488	(dataq\|mpp1q\|mpp1testq\|mpp2q\|mpp2testq\|smp1q\|smp1testq\|specialm1q) error=false;;
[1224]	489	(*) error=true;;
	490	esac;;
[1274]	491	(lccrayh) case $ndq in
[1575]	492	(dataq\|mpp1q\|mpp1testq\|mpp2q\|mpp2testq\|smp1q\|smp1testq\|specialm1q) error=false;;
[1274]	493	(*) error=true;;
	494	esac;;
[1197]	495	(lccrayf) case $ndq in
	496	(usup\|test*\|small\|large) error=false;;
	497	(*) error=true;;
	498	esac;;
[2257]	499	(lceddy) case $ndq in
	500	(eddy.p\|cfdh.p\|cfdl.p\|carl.p\|mpcs.p\|mpcl.p\|mpcb.p\|all_nodes.p) error=false;;
[1099]	501	(*) error=true;;
	502	esac;;
[1040]	503	(lckiaps) case $ndq in
[1940]	504	(express\|normal\|normal20\|quickq) error=false;;
[1040]	505	(*) error=true;;
	506	esac;;
[440]	507	(lckyoto) case $ndq in
	508	(eh\|ph) error=false;;
	509	(*) error=true;;
	510	esac;;
[1099]	511	(lckyuh) case $ndq in
	512	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
	513	(*) error=true;;
	514	esac;;
[1090]	515	(lckyut) case $ndq in
	516	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
	517	(*) error=true;;
	518	esac;;
[2365]	519	(lclrz) case $ndq in
	520	(mpp1\|mpp2\|iuv2\|myri) error=false;;
	521	(*) error=true;;
	522	esac;;
[1]	523	(lctit) case $ndq in
[635]	524	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
[1]	525	(*) error=true;;
	526	esac;;
	527	(t3eb) case $ndq in
	528	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
	529	(*) error=true;;
	530	esac;;
	531	(t3eh) case $ndq in
	532	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
	533	(*) error=true;;
	534	esac;;
	535	(t3ej2\|t3ej5) case $ndq in
	536	(low\|normal\|high) error=false;;
	537	(*) error=true;;
	538	esac;;
	539	(t3es) case $ndq in
	540	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
	541	(*) error=true;;
	542	esac;;
	543	esac
	544	if [[ $error = true ]]
	545	then
	546	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
	547	locat=parameter; exit
	548	else
	549	queue=$no_default_queue
	550	fi
	551	fi
	552
	553
	554
[1289]	555	# CHECK THE CPU-TIME
	556	# SPLIT TIME INTO HOURS, MINUTES, AND SECONDS
[1]	557	done=false
	558	while [[ $done = false ]]
	559	do
	560	if (( $cputime <= 0 ))
	561	then
	562	printf "\n +++ wrong cpu-time or cpu-time missing"
	563	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
	564	printf "\n >>> "
	565	read cputime 1>/dev/null 2>&1
	566	else
	567	done=true
	568	fi
	569	done
	570	(( stunden = cputime / 3600 ))
	571	(( resttime = cputime - stunden * 3600 ))
	572	(( minuten = resttime / 60 ))
	573	(( sekunden = resttime - minuten * 60 ))
	574	timestring=${stunden}:${minuten}:${sekunden}
	575
	576
	577
[1289]	578	# CHECK THE MEMORY DEMAND
[1]	579	done=false
	580	while [[ $done = false ]]
	581	do
	582	if (( memory <= 0 ))
	583	then
	584	printf "\n +++ wrong memory demand or memory demand missing"
	585	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	586	printf "\n >>> "
	587	read memory 1>/dev/null 2>&1
	588	else
	589	done=true
	590	fi
	591	done
	592
[2266]	593	if [[ $remote_host = lctit ]]
[1]	594	then
[635]	595	(( Memory = memory * tasks_per_node / 1000 ))
[1]	596	fi
	597
	598
[1289]	599	# MEMORY DEMAND IN CASE OF OPENMP-USAGE ON IBM-SYSTEMS
[1]	600	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	601	then
	602	(( memory = memory * threads_per_task ))
	603	fi
	604
	605
[1289]	606	# CALCULATE NUMBER OF REQUIRED NODES
[1]	607	if (( tasks_per_node != 0 ))
	608	then
[1279]	609	(( nodes = ( numprocs - 1 ) / ( tasks_per_node * threads_per_task ) + 1 ))
[1]	610	fi
	611
[1094]	612
[1289]	613	# CALCULATE NUMBER OF PROCESSES PER NODE
[622]	614	(( processes_per_node = tasks_per_node * threads_per_task ))
[1]	615
[1094]	616
[1289]	617	# CALCULATE NUMBER OF MPI TASKS
[696]	618	(( mpi_tasks = numprocs / threads_per_task ))
[1]	619
[696]	620
[1289]	621	# SET PORT NUMBER OPTION FOR CALLS OF ssh/scp, subjob AND batch_scp SCRIPTS
[1094]	622	if [[ "$scp_port" != "" ]]
	623	then
	624	PORTOPT="-P $scp_port"
	625	SSH_PORTOPT="-p $scp_port"
	626	fi
	627
	628
[1289]	629	# HEADER-OUTPUT
[1]	630	if [[ $verify = true ]]
	631	then
	632	printf "\n\n"
	633	printf "#--------------------------------------------------------------# \n"
	634	spalte1=SUBJOB;spalte2=$(date)
[1103]	635	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
[1]	636	printf "\| \| \n"
	637	printf "\| values of parameters/options: \| \n"
[1103]	638	spalte1=$(echo local_host$punkte \| cut -c-20)
	639	spalte2=$punkte$local_host
	640	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	641	spalte1=$(echo remote_host$punkte \| cut -c-20)
	642	spalte2=$punkte$remote_host
	643	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	644	spalte1=$(echo queue$punkte \| cut -c-20)
	645	spalte2=$punkte$queue
	646	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	647	spalte1=$(echo memory$punkte \| cut -c-20)
	648	spalte2="$punkte$memory mb"
	649	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	650	spalte1=$(echo cputime$punkte \| cut -c-20)
	651	spalte2="$punkte$cputime sec"
	652	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
	653	spalte1=$(echo job_name$punkte \| cut -c-20)
	654	spalte2="$punkte$job_name"
	655	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
[1]	656	printf "#--------------------------------------------------------------# \n\n"
	657
	658
[1289]	659	# QUERY CHECK
[1]	660	antwort="dummy"
	661	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
	662	do
	663	read antwort?" >>> continue (y/n) ? "
	664	done
	665	if [[ $antwort = n \|\| $antwort = N ]]
	666	then
	667	locat=verify; exit
	668	fi
	669	printf "\n"
	670	fi
	671
[1289]	672	# GENERATE RANDOM IDENTIFIER, AND DETERMINE THE JOBNAME ON THE TARGET HOST
	673	identifier=$RANDOM
	674	job_on_remhost=${job_name}_${identifier}_$local_host
	675	job_to_send=job_to_send_$identifier
[1]	676	if [[ $delete_dayfile = false ]]
	677	then
[1289]	678	remote_dayfile=${local_host}_${job_name}_result_$identifier
[1]	679	local_dayfile=${remote_host}_${job_name}
	680	else
	681	remote_dayfile=/dev/null
	682	fi
	683
	684
[1289]	685	# GENERATE THE BATCH-JOB SCRIPTS (FOR QUEUEING-SYSTEMS qsub/msub/LoadLeveler)
[1]	686	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
	687	then
	688
[1289]	689	# GENERAL LOADLEVELER SETTINGS
[622]	690	execute_in_shell="#!/bin/ksh"
	691	use_shell="# @ shell = /bin/ksh"
	692	consumable_memory="ConsumableMemory($memory mb)"
	693	class="# @ class = $queue"
	694	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
	695	network_to_use="# @ network.mpi = sn_all,shared,us"
	696	data_limit="# @ data_limit = 1.76gb"
	697	image_size="# @ image_size = 50"
[693]	698	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
[312]	699
[693]	700	if [[ $email_notification = none ]]
	701	then
	702	notify_user=""
	703	else
	704	notify_user="# @ notify_user = $email_notification"
	705	if [[ $delete_dayfile = true ]]
	706	then
	707	notification='# @ notification = never'
	708	fi
	709	fi
[622]	710
[312]	711	if [[ $remote_host = ibmh ]]
[1]	712	then
[312]	713	data_limit=""
	714	network_to_use=""
[1184]	715	class="# @ class = $queue"
[312]	716	environment=""
[814]	717	rset="# @ rset = RSET_MCM_AFFINITY"
	718	task_affinity="# @ task_affinity = core(1)"
[693]	719	elif [[ $remote_host = ibmkisti ]]
	720	then
	721	network_to_use="# @ network.MPI = sn_all,shared,US"
	722	wall_clock_limit="# @ wall_clock_limit = $timestring"
[696]	723	if [[ $threads_per_task = 1 ]]
	724	then
	725	rset="# @ rset = RSET_MCM_AFFINITY"
	726	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
	727	fi
[693]	728	environment=""
	729	use_shell=""
	730	data_limit=""
	731	image_size=""
[622]	732	elif [[ $remote_host = ibmku ]]
	733	then
	734	execute_in_shell="#!/usr/bin/ksh"
	735	use_shell="# @ shell = /usr/bin/ksh"
	736	consumable_memory=""
	737	environment=""
	738	network_to_use="# @ network.mpi = sn_all,shared,us"
	739	data_limit=""
	740	image_size=""
	741	elif [[ $remote_host = ibms ]]
	742	then
	743	network_to_use="# @ network.mpi = csss,shared,us"
[1]	744	fi
	745
	746	cat > $job_to_send << %%END%%
[622]	747	$execute_in_shell
	748	$use_shell
[1]	749
	750	# @ job_type = parallel
[693]	751	# @ job_name = $job_name
[1]	752	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
	753	# @ output = $remote_dayfile
	754	# @ error = $remote_dayfile
[693]	755	$wall_clock_limit
[622]	756	$image_size
[312]	757	$class
	758	$environment
[1]	759	$network_to_use
	760	$data_limit
[693]	761	$rset
	762	$mcm_affinity_options
[814]	763	$task_affinity
[1]	764	$notification
[693]	765	$notify_user
[1]	766
	767	%%END%%
	768
	769	if (( nodes > 0 ))
	770	then
	771
[2365]	772	if [[ $remote_host == ibmmuc* ]]
[693]	773	then
[2365]	774	cat > $job_to_send << %%END%%
[693]	775
[2365]	776	#!/bin/bash
	777	# @ job_type = parallel
	778	# @ job_name = $job_name
	779	# @ output = $remote_dayfile
	780	# @ error = $remote_dayfile
	781	# @ wall_clock_limit = $timestring
	782	$class
	783	$mcm_affinity_options
	784	$task_affinity
	785	$notify_user
	786	# @ network.MPI = sn_all,not_shared,us
	787	# @ notification = always
	788	# @ energy_policy_tag = table_kit_ifu
	789	# @ minimize_time_to_solution = yes
	790	# @ node = $nodes
	791	# @ total_tasks = $numprocs
	792	# @ node_topology = island
	793	# @ island_count = 1,2
	794	# @ environment = LD_LIBRARY_PATH=/lrz/sys/libraries/netcdf/4.2.1.1_impi4/lib:/lrz/sys/libraries/hdf5/1.8.15/ibmmpi/lib:/lrz/sys/libraries/fftw/3.3.3/avx/lib/
	795	# @ queue
	796
	797	%%END%%
	798
	799	elif [[ $remote_host != ibmkisti ]]
	800	then
	801
[693]	802	cat >> $job_to_send << %%END%%
[1]	803	# @ node = $nodes
[622]	804	# @ tasks_per_node = $processes_per_node
[1]	805	# @ node_usage = $node_usage
	806	# @ queue
	807
	808	%%END%%
	809
[693]	810	else
	811
	812	cat >> $job_to_send << %%END%%
[696]	813	# @ total_tasks = $mpi_tasks
[693]	814	# @ blocking = unlimited
	815	# @ queue
	816
	817	%%END%%
	818
	819	fi
	820
[1]	821	else
	822
[1289]	823	cat >> $job_to_send << %%END%%
[1]	824	# @ blocking = unlimited
	825	# @ total_tasks = $numprocs
	826	# @ node_usage = $node_usage
	827	# @ queue
	828
	829	%%END%%
	830
	831	fi
	832
[1289]	833	# WORKAROUND BECAUSE OF SILLY JOB FILTER ON ibmkisti
[696]	834	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
	835	then
	836	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
	837	fi
	838
[1]	839	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
	840	then
	841
	842	cat > $job_to_send << %%END%%
	843	#!/bin/ksh
	844
	845	# @ job_type = serial
	846	# @ node_usage = $node_usage
	847	# @ job_name = palm
	848	# @ wall_clock_limit = ${timestring},$timestring
	849	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
	850	# @ output = $remote_dayfile
	851	# @ error = $remote_dayfile
[312]	852	$class
[1]	853	$notification
	854
	855	# @ queue
	856
	857	%%END%%
	858
[1620]	859	elif [[ $remote_host = lcbullhh ]]
	860	then
	861	if [[ $numprocs != 0 ]]
	862	then
	863	cat > $job_to_send << %%END%%
	864	#!/bin/bash -l
	865	#SBATCH -J $job_name
	866	#SBATCH -t $timestring
	867	#SBATCH -N $nodes
	868	#SBATCH --ntasks-per-node=$processes_per_node
	869	#SBATCH -p $queue
	870	#SBATCH -o $remote_dayfile
	871	#SBATCH -e $remote_dayfile
	872	#SBATCH -A $project_account
	873
	874	$init_cmds
	875	$module_calls
	876
	877	%%END%%
	878
	879	else
	880	cat > $job_to_send << %%END%%
	881	#!/bin/bash -l
	882	#SBATCH -J $job_name
	883	#SBATCH -t $timestring
	884	#SBATCH -l ncpus=1
	885	#SBATCH -l pmem=${memory}mb
	886	#SBATCH -m abe
	887	#SBATCH -o $remote_dayfile
	888	#SBATCH -e $remote_dayfile
	889	#SBATCH -A $project_account
	890
	891	$init_cmds
	892	$module_calls
	893
	894	%%END%%
	895
	896	fi
	897
[1274]	898	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
[1224]	899	then
	900
[1480]	901	if [[ "$feature" != "" ]]
	902	then
	903	featuredir="#PBS -l feature=$feature"
	904	fi
	905
[1224]	906	if [[ $numprocs != 0 ]]
	907	then
	908	cat > $job_to_send << %%END%%
[1255]	909	#!/bin/bash
[1224]	910	#PBS -N $job_name
	911	#PBS -l walltime=$timestring
[1264]	912	#PBS -l nodes=$nodes:ppn=$processes_per_node
[1224]	913	#PBS -o $remote_dayfile
	914	#PBS -j oe
	915	#PBS -q $queue
[1480]	916	$featuredir
[1224]	917
[1701]	918	$init_cmds
[1224]	919	$module_calls
	920
	921	%%END%%
	922
	923	else
	924
	925	continue
	926
	927	fi
	928
[1197]	929	elif [[ $remote_host = lccrayf ]]
	930	then
	931
	932	if [[ $numprocs != 0 ]]
	933	then
	934	cat > $job_to_send << %%END%%
	935	#!/bin/bash -l
	936	#SBATCH -J $job_name
	937	#SBATCH -t $timestring
	938	#SBATCH -N $nodes
	939	#SBATCH --ntasks-per-node=$processes_per_node
	940	#SBATCH -p $queue
	941	#SBATCH -o $remote_dayfile
	942	#SBATCH -e $remote_dayfile
	943
	944	$init_cmds
	945	$module_calls
	946
	947	%%END%%
	948
	949	else
	950	cat > $job_to_send << %%END%%
	951	#!/bin/bash -l
	952	#SBATCH -J $job_name
	953	#SBATCH -t $timestring
	954	#SBATCH -l ncpus=1
	955	#SBATCH -l pmem=${memory}mb
	956	#SBATCH -m abe
	957	#SBATCH -o $remote_dayfile
	958	#SBATCH -e $remote_dayfile
	959
	960	$init_cmds
	961	$module_calls
	962
	963	%%END%%
	964
	965	fi
	966
[2257]	967
	968
	969	elif [[ $remote_host = lceddy ]]
[1099]	970	then
[2257]	971	cat > $job_to_send << %%END%%
[1099]	972	#!/bin/bash
[2257]	973	#SBATCH -J $job_name
	974	#SBATCH -t $timestring
	975	#SBATCH -n $numprocs
	976	#SBATCH -N $nodes
	977	#SBATCH --cpus-per-task 1
	978	#SBATCH -p $queue
	979	#SBATCH -o $remote_dayfile
	980	#SBATCH -e $remote_dayfile
	981	#SBATCH --mem-per-cpu $memory
	982	#SBATCH --exclusive
[1099]	983
[2257]	984	module load PALMDependencies/.gcc
	985
	986	$init_cmds
	987	$module_calls
	988
[1099]	989	%%END%%
	990
[1021]	991	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
[368]	992	then
	993
	994	if [[ $numprocs != 0 ]]
	995	then
	996	cat > $job_to_send << %%END%%
	997	#!/bin/ksh
	998	#PBS -N $job_name
	999	#PBS -l walltime=$timestring
	1000	#PBS -l ncpus=$numprocs
	1001	#PBS -l pmem=${memory}mb
	1002	#PBS -o $remote_dayfile
[1021]	1003	#PBS -l nodes=$nodes:ppn=${processes_per_node}
[368]	1004	#PBS -j oe
	1005
	1006	mpd &
	1007
	1008	%%END%%
	1009
	1010	else
	1011	cat > $job_to_send << %%END%%
	1012	#!/bin/ksh
	1013	#PBS -N $job_name
	1014	#PBS -l walltime=$timestring
	1015	#PBS -l ncpus=1
	1016	#PBS -l pmem=${memory}mb
	1017	#PBS -o $remote_dayfile
	1018	#PBS -j oe
	1019
	1020	%%END%%
	1021
	1022	fi
	1023
[2295]	1024	elif [[ $remote_host = lcgeohu ]]
	1025	then
	1026
	1027	if [[ $email_notification = none ]]
	1028	then
	1029	notify_user=""
	1030	else
	1031	notify_user="#SBATCH --mail-type=ALL"
	1032	fi
	1033
	1034	if [[ $numprocs != 0 ]]
	1035	then
	1036	cat > $job_to_send << %%END%%
	1037	#!/bin/bash
	1038	#SBATCH --job-name=$job_name
	1039	#SBATCH --ntasks=$processes_per_node
	1040	#SBATCH --time=$timestring
	1041	#SBATCH --output=$remote_dayfile
	1042	#SBATCH --error=$remote_dayfile
	1043	#SBATCH --qos=short
	1044	$notify_user
	1045
	1046	$init_cmds
	1047	$module_calls
	1048
	1049	%%END%%
	1050
	1051	else
	1052	cat > $job_to_send << %%END%%
	1053	#!/bin/bash
	1054	#SBATCH --job-name=$job_name
	1055	#SBATCH --ntasks=$processes_per_node
	1056	#SBATCH --output=$remote_dayfile
	1057	#SBATCH --error=$remote_dayfile
	1058	#SBATCH -l ncpus=1
	1059
	1060	$init_cmds
	1061	$module_calls
	1062
	1063	%%END%%
	1064
	1065	fi
	1066
[1040]	1067	elif [[ $remote_host = lckiaps ]]
	1068	then
	1069
	1070	if [[ $numprocs != 0 ]]
	1071	then
	1072	cat > $job_to_send << %%END%%
[1940]	1073	#!/bin/bash
[1040]	1074	#PBS -N $job_name
	1075	#PBS -l walltime=$timestring
	1076	#PBS -l select=1:ncpus=$numprocs
	1077	#PBS -l pmem=${memory}mb
	1078	#PBS -q $queue
	1079	#PBS -o $remote_dayfile
	1080	#PBS -j oe
	1081	#PBS -V
	1082
	1083	%%END%%
	1084
	1085	else
	1086	cat > $job_to_send << %%END%%
[1940]	1087	#!/bin/bash
[1040]	1088	#PBS -N $job_name
	1089	#PBS -l walltime=$timestring
	1090	#PBS -l ncpus=1
	1091	#PBS -l pmem=${memory}mb
	1092	#PBS -o $remote_dayfile
	1093	#PBS -j oe
	1094
	1095	%%END%%
	1096
	1097	fi
	1098
[693]	1099	elif [[ $remote_host = lcyon ]]
	1100	then
	1101
	1102	if [[ $numprocs != 0 ]]
	1103	then
	1104	cat > $job_to_send << %%END%%
	1105	#!/bin/ksh
	1106	#PBS -N $job_name
	1107	#PBS -l walltime=$timestring
	1108	#PBS -l ncpus=$numprocs
	1109	#PBS -l pmem=${memory}mb
	1110	#PBS -o $remote_dayfile
	1111	#PBS -j oe
	1112
	1113	%%END%%
	1114
	1115	else
	1116	cat > $job_to_send << %%END%%
	1117	#!/bin/ksh
	1118	#PBS -N $job_name
	1119	#PBS -l walltime=$timestring
	1120	#PBS -l ncpus=1
	1121	#PBS -l pmem=${memory}mb
	1122	#PBS -o $remote_dayfile
	1123	#PBS -j oe
	1124
	1125	%%END%%
	1126
	1127	fi
	1128
[892]	1129	elif [[ $remote_host = lcxe6 ]]
[164]	1130	then
	1131
	1132	if [[ $numprocs != 0 ]]
	1133	then
	1134	cat > $job_to_send << %%END%%
[799]	1135	#!/bin/ksh
[164]	1136	#PBS -S /bin/ksh
	1137	#PBS -N $job_name
[552]	1138	#PBS -A $project_account
[206]	1139	#PBS -j oe
[164]	1140	#PBS -l walltime=$timestring
	1141	#PBS -l mppwidth=${numprocs}
[622]	1142	#PBS -l mppnppn=${processes_per_node}
[164]	1143	#PBS -m abe
	1144	#PBS -o $remote_dayfile
[492]	1145	$email_directive
[164]	1146
[892]	1147	$init_cmds
[493]	1148	$module_calls
[343]	1149
[164]	1150	%%END%%
	1151
[108]	1152	else
	1153	cat > $job_to_send << %%END%%
	1154	#!/bin/ksh
[168]	1155	#PBS -S /bin/ksh
[108]	1156	#PBS -N $job_name
[552]	1157	#PBS -A $project_account
[206]	1158	#PBS -j oe
[108]	1159	#PBS -l walltime=$timestring
	1160	#PBS -l ncpus=1
	1161	#PBS -l pmem=${memory}mb
	1162	#PBS -m abe
[492]	1163	$email_directive
[108]	1164	#PBS -o $remote_dayfile
	1165
[892]	1166	$init_cmds
[493]	1167	$module_calls
[343]	1168
[108]	1169	%%END%%
	1170
	1171	fi
	1172
[440]	1173	elif [[ $remote_host = lckyoto ]]
[437]	1174	then
	1175
[440]	1176	cat > $job_to_send << %%END%%
[799]	1177	#!/bin/ksh
[440]	1178	# @\$-o $remote_dayfile
	1179	# @\$-eo -oi
	1180	# @\$-lP 16
[799]	1181	# @\$-lp 1
[440]	1182	# @\$-lm 28gb -llm unlimited -ls unlimited
	1183	# @\$-q $queue
	1184	# @\$-Pvn abs_pack
	1185	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
	1186	#. /thin/local/etc/setprofile/intel-11.0.sh
	1187	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
	1188	. ~/.myprofile
	1189	#. /home2/t/t51254/palm/current_version/myprofile
	1190	#. /thin/apps/pgi/mpi.sh
	1191	#
	1192	env
	1193	#
	1194	set -x
	1195
	1196	%%END%%
	1197
	1198	elif [[ $remote_host = lcxt5m ]]
	1199	then
	1200
[437]	1201	if [[ $numprocs != 0 ]]
	1202	then
	1203	cat > $job_to_send << %%END%%
[799]	1204	#!/bin/ksh
[437]	1205	#PBS -S /bin/ksh
	1206	#PBS -N $job_name
	1207	#PBS -j oe
	1208	#PBS -l walltime=$timestring
	1209	#PBS -l mppwidth=${numprocs}
[622]	1210	#PBS -l mppnppn=${processes_per_node}
[437]	1211	#PBS -m abe
	1212	#PBS -o $remote_dayfile
	1213
[892]	1214	$init_cmds
[493]	1215	$module_calls
[437]	1216
	1217	%%END%%
	1218
	1219	else
	1220	cat > $job_to_send << %%END%%
	1221	#!/bin/ksh
	1222	#PBS -S /bin/ksh
	1223	#PBS -N $job_name
	1224	#PBS -j oe
	1225	#PBS -l walltime=$timestring
	1226	#PBS -l ncpus=1
	1227	#PBS -l pmem=${memory}mb
	1228	#PBS -m abe
	1229	#PBS -o $remote_dayfile
	1230
[892]	1231	$init_cmds
[493]	1232	$module_calls
[437]	1233
	1234	%%END%%
	1235
	1236	fi
	1237
[1099]	1238	elif [[ $remote_host = lckyuh ]]
	1239	then
	1240	cat > $job_to_send << %%END%%
	1241	#!/bin/bash
	1242	#PJM -L "rscgrp=$queue"
	1243	#PJM -L "node=$nodes"
	1244	#PJM --mpi "proc=$numprocs"
	1245	#PJM -L "elapse=$timestring"
	1246	#PJM -o $remote_dayfile
	1247	#PJM -j
	1248	#PJM -X
	1249	#PJM --no-stging
	1250
	1251	export LANG=en_US.UTF-8
	1252	%%END%%
	1253
[1090]	1254	elif [[ $remote_host = lckyut ]]
	1255	then
	1256	cat > $job_to_send << %%END%%
	1257	#!/bin/bash
[1099]	1258	#PJM -L "rscgrp=$queue"
[1090]	1259	#PJM -L "vnode=$numprocs"
	1260	#PJM -L "vnode-core=1"
	1261	#PJM -L "elapse=$timestring"
	1262	#PJM --mpi proc=$numprocs
	1263	#PJM -o $remote_dayfile
	1264	#PJM -j
[1099]	1265	#PJM -X
	1266	#PJM --no-stging
[1090]	1267
	1268	export LANG=en_US.UTF-8
	1269	%%END%%
	1270
[1866]	1271	elif [[ $remote_host = lcocean ]]
	1272	then
	1273	cat > $job_to_send << %%END%%
	1274	#!/bin/bash
	1275	#$ -cwd
	1276	#$ -V
	1277	#$ -N $job_name
	1278	#$ -pe orte $numprocs
	1279	#$ -o $remote_dayfile
	1280	#$ -j y
	1281	#$ -R y
	1282	$init_cmds
	1283	$module_calls
	1284
	1285	%%END%%
	1286
[1]	1287	elif [[ $remote_host = lctit ]]
	1288	then
	1289	cat > $job_to_send << %%END%%
[635]	1290	#!/bin/ksh
[892]	1291	$init_cmds
[678]	1292	$module_calls
	1293
[1]	1294	%%END%%
	1295
[1289]	1296	# SET OPTIONS FOR SUBMIT-COMMAND
[678]	1297	if [[ $tasks_per_node != $processes_per_node ]]
	1298	then
[1378]	1299	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -et 1 -q $queue "
[678]	1300	else
[1378]	1301	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -et 1 -q $queue "
[678]	1302	fi
[1]	1303
[2365]	1304	elif [[ $remote_host = lclrz ]]
	1305	then
	1306	cat > $job_to_send << %%END%%
	1307	#!/bin/bash
	1308	#SBATCH -J $job_name
	1309	#SBATCH -t $timestring
	1310	#SBATCH -N $nodes
	1311	#SBATCH --ntasks-per-node=$processes_per_node
	1312	#SBATCH --get-user-env
	1313	#SBATCH -o $remote_dayfile
	1314	#SBATCH -e $remote_dayfile
	1315	#SBATCH --mail-user=${email_notification}
	1316	#SBATCH --clusters=$queue
	1317
	1318	$init_cmds
	1319
	1320	$module_calls
	1321
	1322	%%END%%
	1323
	1324	elif [[ $remote_host = lckea* ]]
	1325	then
	1326	keal_tasks_per_core=1
	1327
	1328	if [[ $queue = haswell \|\| $queue = ivy* ]]
	1329	then
	1330	if (( tasks_per_node > 20 ))
	1331	then
	1332	keal_tasks_per_core=2
	1333	fi
	1334	fi
	1335
	1336	cat > $job_to_send << %%END%%
	1337	#!/bin/bash
	1338	#SBATCH -J $job_name
	1339	#SBATCH -t $timestring
	1340	#SBATCH -N $nodes
	1341	#SBATCH --ntasks-per-node=$processes_per_node
	1342	#SBATCH --ntasks-per-core=$keal_tasks_per_core
	1343	#SBATCH --mem-per-cpu=${memory}mb
	1344	#SBATCH --get-user-env
	1345	#SBATCH -o $remote_dayfile
	1346	#SBATCH -e $remote_dayfile
	1347	#SBATCH --mail-user=${email_notification}
	1348	#SBATCH --mail-type=ALL
	1349	#SBATCH --partition=$queue
	1350
	1351	export MV2_ENABLE_AFFINITY=0
	1352
	1353	$init_cmds
	1354
	1355	$module_calls
	1356
	1357	%%END%%
	1358
	1359	elif [[ $remote_host=lcbwuni ]]
	1360	then
	1361	if [[ $email_notification = none ]]
	1362	then
	1363	email_directive=""
	1364	else
	1365	email_directive="#PBS -M $email_notification"
	1366	fi
	1367	cat > $job_to_send << %%END%%
	1368	#!/bin/ksh
	1369	#PBS -N $job_name
	1370	#PBS -l walltime=$timestring
	1371	#PBS -l nodes=${nodes}:ppn=$processes_per_node
	1372	#PBS -l pmem=${memory}mb
	1373	#PBS -m abe
	1374	#PBS -o $remote_dayfile
	1375	#PBS -j oe
	1376	#PBS -q $queue
	1377	$email_directive
	1378	%%END%%
	1379
[1]	1380	else
	1381
	1382	cat > $job_to_send << %%END%%
	1383	# @\$-q ${queue}
	1384	# @\$-l${qsubtime} $timestring
	1385	# @\$-l${qsubmem} ${memory}mb
	1386	# @\$-o $remote_dayfile
	1387	# @\$-eo
	1388
	1389	%%END%%
	1390
	1391	fi
	1392
	1393
[1289]	1394	# IN CASE OF JOBS EXECUTING ON REMOTE-HOSTS, THE TRANSFER OF THE DAYFILES
	1395	# TO THE LOCAL HOSTS WILL BE INITIATED BY TRAP ON EXIT
	1396	# NO TRANSFER POSSIBLE ON IBM IN SEOUL
[1]	1397	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
	1398	then
	1399	echo "set +vx" >> $job_to_send
	1400	echo "trap '" >> $job_to_send
	1401	echo "set +vx" >> $job_to_send
[2295]	1402	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $remote_host = lcbullhh \|\| $remote_host = lccrayb \|\| $remote_host = lccrayh \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* \|\| $remote_host = lcxe6 \|\| $remote_host = lcocean \|\| $remote_host = lcgeohu ]]
[1]	1403	then
[622]	1404	if [[ $remote_host = ibmh ]]
[1]	1405	then
	1406	return_queue=c1
[693]	1407	elif [[ $remote_host = ibmkisti ]]
	1408	then
	1409	return_queue=class.1-2
[622]	1410	elif [[ $remote_host = ibmku ]]
	1411	then
	1412	return_queue=sdbg2
[1]	1413	elif [[ $remote_host = ibms ]]
	1414	then
	1415	return_queue=p_normal
[1620]	1416	elif [[ $remote_host = lcbullhh ]]
	1417	then
	1418	return_queue=shared
[1274]	1419	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
[1255]	1420	then
	1421	return_queue=dataq
[1468]	1422	elif [[ $remote_host = lcxe6 ]]
	1423	then
	1424	return_queue=debug
[1040]	1425	elif [[ $remote_host = lckiaps ]]
	1426	then
	1427	return_queue=express
[1099]	1428	elif [[ $remote_host = lckyuh ]]
	1429	then
	1430	return_queue=cx-single
[1090]	1431	elif [[ $remote_host = lckyut ]]
	1432	then
	1433	return_queue=cx-single
[1]	1434	else
	1435	return_queue=unknown
	1436	fi
	1437
	1438	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1439	then
	1440
[622]	1441	if [[ $remote_host = ibmku ]]
	1442	then
[1289]	1443	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
	1444	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
[622]	1445	else
[1289]	1446	echo "echo \"#!/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
[622]	1447	fi
[1289]	1448	echo "echo \"# @ job_type = serial\" >> scpjob.$identifier" >> $job_to_send
	1449	echo "echo \"# @ job_name = transfer\" >> scpjob.$identifier" >> $job_to_send
	1450	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$identifier" >> $job_to_send
	1451	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$identifier " >> $job_to_send
	1452	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
	1453	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
[312]	1454	if [[ $host != "ibmh" ]]
	1455	then
[1289]	1456	echo "echo \"# @ class = $return_queue\" >> scpjob.$identifier" >> $job_to_send
[312]	1457	fi
[1289]	1458	echo "echo \"# @ image_size = 10\" >> scpjob.$identifier" >> $job_to_send
	1459	echo "echo \"# @ notification = never\" >> scpjob.$identifier" >> $job_to_send
[1]	1460
[1289]	1461	echo "echo \"# @ queue\" >> scpjob.$identifier" >> $job_to_send
	1462	echo "echo \" \" >> scpjob.$identifier" >> $job_to_send
[1]	1463
[1289]	1464	echo "echo \"set -x\" >> scpjob.$identifier" >> $job_to_send
[1468]	1465	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$identifier" >> $job_to_send
[622]	1466	if [[ $remote_host = ibmku ]]
	1467	then
[1289]	1468	echo "echo \"rm scpjob.$identifier\" >> scpjob.$identifier" >> $job_to_send
[622]	1469	fi
[1289]	1470	echo "echo \"exit\" >> scpjob.$identifier" >> $job_to_send
[1]	1471
[1620]	1472	elif [[ $remote_host = lcbullhh ]]
	1473	then
	1474	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
	1475	echo "#!/bin/bash" >> $job_to_send
	1476	echo "#SBATCH --job-name=job_protocol_transfer" >> $job_to_send
	1477	echo "#SBATCH -t 00:20:00" >> $job_to_send
	1478	echo "#SBATCH -N 1" >> $job_to_send
	1479	echo "#SBATCH -n 1" >> $job_to_send
	1480	echo "#SBATCH -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1481	echo "#SBATCH -o $remote_dayfile" >> $job_to_send
	1482	echo "#SBATCH -e $remote_dayfile" >> $job_to_send
	1483	echo "#SBATCH -A $project_account" >> $job_to_send
	1484	echo "#SBATCH -p $return_queue" >> $job_to_send
	1485	echo " " >> $job_to_send
	1486	echo "set -x" >> $job_to_send
	1487	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1488	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1489	echo "%%END%%" >> $job_to_send
	1490
[1099]	1491	elif [[ $remote_host = lckyuh ]]
	1492	then
[1289]	1493	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
[1099]	1494	echo "#!/bin/bash" >> $job_to_send
	1495	echo "#PJM -L \"node=1\"" >> $job_to_send
	1496	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
	1497	echo "#PJM --no-stging" >> $job_to_send
	1498	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
	1499	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1500	echo "#PJM -j" >> $job_to_send
	1501	echo " " >> $job_to_send
	1502	echo "export LANG=en_US.UTF-8" >> $job_to_send
	1503	echo "set -x" >> $job_to_send
[1468]	1504	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1099]	1505	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1506	echo "%%END%%" >> $job_to_send
	1507
[1090]	1508	elif [[ $remote_host = lckyut ]]
	1509	then
[1289]	1510	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
[1090]	1511	echo "#!/bin/bash" >> $job_to_send
	1512	echo "#PJM -L \"vnode=1\"" >> $job_to_send
	1513	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
	1514	echo "#PJM --no-stging" >> $job_to_send
	1515	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
	1516	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1517	echo "#PJM -j" >> $job_to_send
	1518	echo " " >> $job_to_send
	1519	echo "export LANG=en_US.UTF-8" >> $job_to_send
	1520	echo "set -x" >> $job_to_send
[1468]	1521	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1090]	1522	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1523	echo "%%END%%" >> $job_to_send
	1524
[1274]	1525	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
[1255]	1526	then
[1289]	1527	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
[1255]	1528	echo "#!/bin/bash" >> $job_to_send
	1529	echo "#PBS -N job_protocol_transfer" >> $job_to_send
	1530	echo "#PBS -l walltime=00:30:00" >> $job_to_send
[1262]	1531	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
[1255]	1532	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1533	echo "#PBS -j oe" >> $job_to_send
	1534	echo " " >> $job_to_send
	1535	echo "set -x" >> $job_to_send
[1468]	1536	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1255]	1537	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1538	echo "%%END%%" >> $job_to_send
	1539
[1866]	1540	elif [[ $remote_host = lcocean ]]
	1541	then
	1542	echo "cat > scpjob.${identifier}.tmp << %%END%%" >> $job_to_send
	1543	echo "#!/bin/bash" >> $job_to_send
	1544	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
	1545	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
	1546	echo "SGEPREFIX -cwd" >> $job_to_send
	1547	echo "SGEPREFIX -j y" >> $job_to_send
	1548	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$identifier" >> $job_to_send
	1549	echo " " >> $job_to_send
	1550	echo "set -x" >> $job_to_send
	1551	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
	1552	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
	1553	echo "" >> $job_to_send
	1554	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1555	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1556	echo "rm -f scpjob.${identifier}" >> $job_to_send
	1557	echo "%%END%%" >> $job_to_send
	1558	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${identifier}.tmp > scpjob.${identifier}" >> $job_to_send
	1559	echo "rm -f scpjob.${identifier}.tmp" >> $job_to_send
	1560
[1468]	1561	elif [[ $remote_host = lcxe6 ]]
	1562	then
	1563	echo "cat > scpjob.${identifier} << %%END%%" >> $job_to_send
	1564	echo "#!/bin/ksh" >> $job_to_send
	1565	echo "#PBS -N job_protocol_transfer" >> $job_to_send
	1566	echo "#PBS -l walltime=00:30:00" >> $job_to_send
	1567	echo "#PBS -A $project_account" >> $job_to_send
	1568	echo "#PBS -l mppwidth=1" >> $job_to_send
	1569	echo "#PBS -l mppnppn=1" >> $job_to_send
	1570	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1571	echo "#PBS -j oe" >> $job_to_send
	1572	echo " " >> $job_to_send
	1573	echo "set -x" >> $job_to_send
	1574	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1575	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1576	echo "%%END%%" >> $job_to_send
[2295]	1577
	1578	elif [[ $remote_host = lcgeohu ]]
	1579	then
	1580	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
	1581	echo "#!/bin/bash" >> $job_to_send
	1582	echo "#SBATCH --job-name=job_protocol_transfer" >> $job_to_send
	1583	echo "#SBATCH -t 00:20:00" >> $job_to_send
	1584	echo "#SBATCH -N 1" >> $job_to_send
	1585	echo "#SBATCH -n 1" >> $job_to_send
	1586	echo "#SBATCH -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1587	echo "#SBATCH -o $remote_dayfile" >> $job_to_send
	1588	echo "#SBATCH -e $remote_dayfile" >> $job_to_send
	1589	echo " " >> $job_to_send
	1590	echo "set -x" >> $job_to_send
	1591	echo "sbatch scpjob.$identifier" >> $job_to_send
	1592	echo "%%END%%" >> $job_to_send
	1593
[1]	1594	else
	1595
[1289]	1596	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
[1]	1597	echo "# @\\\$-q $return_queue" >> $job_to_send
	1598	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
	1599	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
	1600	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
	1601	then
	1602	echo "# @\$-l mpp_p=0" >> $job_to_send
	1603	fi
	1604	echo '# @\$-lF 10mb' >> $job_to_send
	1605	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
	1606	echo '# @\\\$-eo' >> $job_to_send
	1607	echo " " >> $job_to_send
	1608	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1609	then
	1610	echo "set +vx" >> $job_to_send
	1611	echo ". .profile" >> $job_to_send
	1612	fi
	1613	echo "set -x" >> $job_to_send
[1468]	1614	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
[1]	1615	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1616	echo "%%END%%" >> $job_to_send
[1620]	1617
[1]	1618	fi
	1619
	1620	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1621	then
[1289]	1622	echo "llsubmit scpjob.$identifier" >> $job_to_send
[1620]	1623	elif [[ $remote_host = lcbullhh ]]
	1624	then
	1625	echo "sbatch scpjob.$identifier" >> $job_to_send
[1274]	1626	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
[1255]	1627	then
[2134]	1628	echo "msub -E -q $return_queue scpjob.$identifier" >> $job_to_send
[1]	1629	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1630	then
[1289]	1631	echo "qsub -J n scpjob.$identifier" >> $job_to_send
[1]	1632	elif [[ $remote_host = t3es ]]
	1633	then
[1289]	1634	echo "qsub -J n -s /bin/ksh scpjob.$identifier" >> $job_to_send
[1043]	1635	elif [[ $remote_host = lckiaps ]]
	1636	then
[1289]	1637	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
[1468]	1638	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"$submcom ${job_catalog}/scpjob.$identifier\" " >> $job_to_send
[1289]	1639	echo "rm ${job_catalog}/scpjob.$identifier" >> $job_to_send
[1099]	1640	elif [[ $remote_host = lckyu* ]]
[1090]	1641	then
[1468]	1642	echo "scp $PORTOPT scpjob.$identifier ${remote_username}@${remote_address}:job_queue" >> $job_to_send
	1643	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"cd job_queue; $submcom scpjob.$identifier; rm scpjob.$identifier\" " >> $job_to_send
[2257]	1644	elif [[ $remote_host = lcocean ]]
[1099]	1645	then
[1289]	1646	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
[1468]	1647	echo "/usr/bin/ssh ${remote_username}@${remote_address} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$identifier\" " >> $job_to_send
[1]	1648	else
[1289]	1649	echo "$submcom scpjob.$identifier" >> $job_to_send
[1]	1650	fi
[1043]	1651	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
[622]	1652	then
[1289]	1653	echo "rm scpjob.$identifier" >> $job_to_send
[622]	1654	fi
[1]	1655	else
[1468]	1656	# echo "ftpcopy -d $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1289]	1657	# ??? funktioniert das ÃŒberhaupt noch ???
[1468]	1658	echo "nohup ftpcopy -d -w 15 $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
[1]	1659	fi
	1660	echo "set -x" >> $job_to_send
	1661	echo " ' exit" >> $job_to_send
	1662	echo "set -x" >> $job_to_send
	1663	fi
	1664
	1665
[1289]	1666	# APPEND THE JOB-FILE (CREATE BY mrun) TO THE JOB-DIRECTIVES GENERATED ABOVE
[1]	1667	cat $file_to_send >> $job_to_send
[69]	1668
[1]	1669	if [[ $remote_host = ibm ]]
	1670	then
	1671	echo " " >> $job_to_send
	1672	echo "exit" >> $job_to_send
	1673	fi
[635]	1674
[1289]	1675	# REMOVE JOB-FILE
[2257]	1676	if [[ $remote_host = lctit \|\| $remote_host = ibmku ]]
[69]	1677	then
	1678	echo " " >> $job_to_send
	1679	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
	1680	fi
[1]	1681
	1682
[1289]	1683	# TRANSFER JOB TO THE TARGET HOST (JOB-DIRECTORY)
[1]	1684	if [[ $no_submit = false ]]
	1685	then
	1686	if [[ $remote_host != $local_host ]]
	1687	then
	1688	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
[1289]	1689	if [[ $remote_host = ibms ]] # ssh on ibms cannot handle "~/"
[1]	1690	then
[82]	1691	job_catalog_save=$job_catalog
	1692	job_catalog=job_queue
[2295]	1693	elif [[ $remote_host = lcgeohu ]]
	1694	then
	1695	job_catalog_save=$job_catalog
	1696	job_catalog=/home/${remote_user}/job_queue
[82]	1697	fi
[2266]	1698	scp $ssh_key $PORTOPT $job_to_send ${remote_user}@${remote_address}:${job_catalog}/$job_on_remhost
[82]	1699	if [[ $? = 1 ]]
	1700	then
	1701	locat=scp; exit
	1702	fi
[2295]	1703	if [[ $remote_host = ibms \|\| $remote_host = lcgeohu ]]
[82]	1704	then
	1705	job_catalog=$job_catalog_save
	1706	fi
[1]	1707	[[ $verify = true ]] && printf "\n >>> finished\n"
	1708	else
	1709	eval job_catalog=$job_catalog
	1710	cp $job_to_send ${job_catalog}/$job_on_remhost
	1711	fi
	1712
	1713
	1714
[1289]	1715	# START NQS- / LOADLEVELER-JOB
[1]	1716	if [[ $remote_host != $local_host ]]
	1717	then
	1718	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
[635]	1719
[1289]	1720	if [[ $remote_host = ibmku ]]
[1]	1721	then
[1468]	1722	ssh $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
[2295]	1723	elif [[ $remote_host = lcgeohu ]]
	1724	then
	1725	ssh $ssh_key $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
[1]	1726	else
[1944]	1727	ssh $ssh_key $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
[82]	1728	fi
[1]	1729
	1730	[[ $verify = true ]] && printf " >>> o.k.\n"
	1731	else
	1732	cd $job_catalog
[2295]	1733	if [[ $(echo $local_host \| cut -c1-3) = ibm \|\| $(echo $local_host \| cut -c1-6) = lccray \|\| $local_host = lceddy \|\| $local_host = lcgeohu ]]
[1]	1734	then
	1735	eval $submcom $job_on_remhost
[2184]	1736	elif [[ $local_host = lctit \|\| $local_host = lcxe6 \|\| $local_host = lck \|\| $local_host = lckordi \|\| $local_host = lcyon \|\| $local_host = lcsb \|\| $local_host = lckyu* ]]
[108]	1737	then
[635]	1738	chmod u+x $job_on_remhost
[108]	1739	eval $submcom $job_on_remhost
[1620]	1740	elif [[ $local_host = lcbullhh ]]
	1741	then
	1742	if [[ $queue = default ]]
	1743	then
	1744	eval $submcom $job_on_remhost
	1745	fi
[2365]	1746	elif [[ $local_host = lclrz \|\| $local_host = lckea* ]]
	1747	then
	1748	eval $submcom $job_on_remhost
	1749	elif [[ $local_host = lcbwuni ]]
	1750	then
	1751	msub -q $queue $job_on_remhost
[1]	1752	else
	1753	qsub $job_on_remhost
	1754	fi
[622]	1755
[2257]	1756	# JOBFILE MUST NOT BE DELETED ON lctit/ibmku. THIS WILL BE DONE
[1289]	1757	# AT THE END OF THE JOB
[2295]	1758	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcgeohu ]]
[622]	1759	then
	1760	rm $job_on_remhost
	1761	fi
[1]	1762	cd - > /dev/null
	1763	fi
	1764	fi
	1765
[1289]	1766	# FINAL ACTIONS
[1]	1767	if [[ $no_submit = false ]]
	1768	then
[1099]	1769	rm -f $job_to_send
[1]	1770	fi
[1266]	1771	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |