[1] | 1 | #!/bin/ksh |
---|
[1090] | 2 | |
---|
| 3 | # subjob - script for automatic generation and submission of batch-job files |
---|
| 4 | # for various batch queuing systems |
---|
| 5 | |
---|
[1046] | 6 | #--------------------------------------------------------------------------------# |
---|
| 7 | # This file is part of PALM. |
---|
| 8 | # |
---|
| 9 | # PALM is free software: you can redistribute it and/or modify it under the terms |
---|
| 10 | # of the GNU General Public License as published by the Free Software Foundation, |
---|
| 11 | # either version 3 of the License, or (at your option) any later version. |
---|
| 12 | # |
---|
| 13 | # PALM is distributed in the hope that it will be useful, but WITHOUT ANY |
---|
| 14 | # WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR |
---|
| 15 | # A PARTICULAR PURPOSE. See the GNU General Public License for more details. |
---|
| 16 | # |
---|
| 17 | # You should have received a copy of the GNU General Public License along with |
---|
| 18 | # PALM. If not, see <http://www.gnu.org/licenses/>. |
---|
| 19 | # |
---|
| 20 | # Copyright 1997-2012 Leibniz University Hannover |
---|
| 21 | #--------------------------------------------------------------------------------# |
---|
| 22 | # |
---|
| 23 | # Current revisions: |
---|
[1090] | 24 | # ------------------ |
---|
| 25 | # adjustments for Kyushu-University computing center (lckyut) |
---|
| 26 | # old changelog messages removed |
---|
[1046] | 27 | # |
---|
| 28 | # Former revisions: |
---|
| 29 | # ----------------- |
---|
[169] | 30 | # $Id: subjob 1090 2013-02-02 07:06:13Z raasch $ |
---|
[1047] | 31 | # |
---|
| 32 | # 1046 2012-11-09 14:38:45Z maronga |
---|
| 33 | # code put under GPL (PALM 3.9) |
---|
| 34 | # |
---|
[1090] | 35 | # 08/07/94 - Siggi - first version finished |
---|
| 36 | # 29/06/94 - Siggi - script development started |
---|
| 37 | #--------------------------------------------------------------------------------# |
---|
| 38 | # subjob - script for automatic generation and submission of batch-job files |
---|
| 39 | # for various batch queuing systems |
---|
| 40 | #--------------------------------------------------------------------------------# |
---|
[1] | 41 | |
---|
| 42 | |
---|
| 43 | # VARIABLENVEREINBARUNGEN + DEFAULTWERTE |
---|
[352] | 44 | delete_dayfile=false |
---|
[799] | 45 | email_notification=none |
---|
[122] | 46 | group_number=none |
---|
[1] | 47 | locat=normal |
---|
| 48 | no_default_queue=none |
---|
| 49 | no_submit=false |
---|
| 50 | job_catalog="~/job_queue" |
---|
| 51 | job_name=none |
---|
| 52 | local_user=$LOGNAME |
---|
| 53 | node_usage=shared |
---|
[475] | 54 | numprocs=0 |
---|
[1] | 55 | punkte="..........................................................." |
---|
| 56 | submcom=qsub |
---|
| 57 | queue=default |
---|
| 58 | remote_host=none |
---|
| 59 | remote_user="" |
---|
| 60 | verify=true |
---|
| 61 | |
---|
| 62 | typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden |
---|
[696] | 63 | typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1 |
---|
[1] | 64 | typeset -L20 spalte1 |
---|
| 65 | typeset -R40 spalte2 |
---|
| 66 | typeset -L60 spalte3 |
---|
| 67 | |
---|
| 68 | |
---|
| 69 | |
---|
| 70 | # FEHLERBEHANDLUNG |
---|
| 71 | # BEI EXIT: |
---|
| 72 | trap 'if [[ $locat != normal ]] |
---|
| 73 | then |
---|
| 74 | case $locat in |
---|
| 75 | (option) printf "\n --> available optios can be displayed" |
---|
| 76 | printf " by typing:" |
---|
| 77 | printf "\n \"subjob ?\" \n";; |
---|
| 78 | (ftpcopy|parameter|scp|verify) printf "\n";; |
---|
| 79 | (*) printf "\n +++ unknown error" |
---|
| 80 | printf "\n please inform S. Raasch!\n" |
---|
| 81 | esac |
---|
| 82 | [[ -f $job_to_send ]] && rm $job_to_send |
---|
| 83 | printf "\n\n+++ SUBJOB killed \n\n" |
---|
| 84 | fi' exit |
---|
| 85 | |
---|
| 86 | |
---|
| 87 | # BEI TERMINAL-BREAK: |
---|
| 88 | trap '[[ -f $job_to_send ]] && rm $job_to_send |
---|
| 89 | printf "\n\n+++ SUBJOB killed \n\n" |
---|
| 90 | exit |
---|
| 91 | ' 2 |
---|
| 92 | |
---|
| 93 | |
---|
| 94 | |
---|
| 95 | |
---|
| 96 | # LOKALEN HOSTNAMEN FESTSTELLEN |
---|
| 97 | local_host=$(hostname) |
---|
| 98 | |
---|
| 99 | |
---|
| 100 | |
---|
| 101 | # HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST |
---|
| 102 | # UEBERHAUPT ZULAESSIG IST |
---|
[717] | 103 | # Note: One of the entries for "lck" or "lckordi" always has to be |
---|
| 104 | # comment out, because the hostname (node*) is same for both machines |
---|
[1] | 105 | case $local_host in |
---|
| 106 | (atmos) local_addres=172.20.25.35; local_host=lcide;; |
---|
[102] | 107 | (autan) local_addres=130.75.105.57; local_host=lcmuk;; |
---|
[5] | 108 | (bora) local_addres=130.75.105.103; local_host=lcmuk;; |
---|
[400] | 109 | (bd1) local_addres=130.73.232.64; local_host=lcsgib;; |
---|
| 110 | (bd2) local_addres=130.73.232.65; local_host=lcsgib;; |
---|
| 111 | (bd3) local_addres=130.73.232.66; local_host=lcsgib;; |
---|
| 112 | (bd4) local_addres=130.73.232.67; local_host=lcsgib;; |
---|
| 113 | (b01*|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;; |
---|
[291] | 114 | (bicegate2) local_addres=130.73.232.103; local_host=lcsgib;; |
---|
[749] | 115 | (blizzard1) local_addres=136.172.40.15; local_host=ibmh;; |
---|
[12] | 116 | (breva) local_addres=130.75.105.98; local_host=lcmuk;; |
---|
[372] | 117 | (caurus) local_addres=130.75.105.19; local_host=lcmuk;; |
---|
[693] | 118 | (climate*) local_addres=165.132.26.68; local_host=lcyon;; |
---|
[108] | 119 | (compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;; |
---|
[1] | 120 | (cs*) local_addres=136.172.44.131; local_host=nech;; |
---|
[5] | 121 | (elephanta) local_addres=130.75.105.6; local_host=lcmuk;; |
---|
[108] | 122 | (fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;; |
---|
[367] | 123 | (node*) local_addres=165.132.26.61 local_host=lck;; |
---|
[717] | 124 | # (node*) local_addres=210.219.61.8 local_host=lckordi;; |
---|
[693] | 125 | (gaia*) local_addres=150.183.146.24; local_host=ibmkisti;; |
---|
[101] | 126 | (gallego) local_addres=130.75.105.10; local_host=lcmuk;; |
---|
[1] | 127 | (gfdl5) local_addres=165.132.26.58; local_host=ibmy;; |
---|
| 128 | (gfdl3.yonsei.ac.kr) local_addres=165.132.26.56; local_host=decalpha;; |
---|
[5] | 129 | (gregale) local_addres=130.75.105.109; local_host=lcmuk;; |
---|
| 130 | (hababai) local_addres=130.75.105.108; local_host=lcmuk;; |
---|
[892] | 131 | (hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxe6;; |
---|
[400] | 132 | (hd1) local_addres=130.75.4.104; local_host=lcsgih;; |
---|
| 133 | (hd2) local_addres=130.75.4.105; local_host=lcsgih;; |
---|
| 134 | (hd3) local_addres=130.75.4.106; local_host=lcsgih;; |
---|
| 135 | (hd4) local_addres=130.75.4.107; local_host=lcsgih;; |
---|
[739] | 136 | (hicegate0) local_addres=130.75.4.101; local_host=lcsgih;; |
---|
[292] | 137 | (h01*|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;; |
---|
[210] | 138 | (hicegate2) local_addres=130.75.4.103; local_host=lcsgih;; |
---|
[440] | 139 | (hx*) local_addres=133.3.51.11; local_host=lckyoto;; |
---|
[749] | 140 | (inferno) local_addres=130.75.105.5; local_host=lcmuk;; |
---|
[5] | 141 | (irifi) local_addres=130.75.105.104; local_host=lcmuk;; |
---|
[407] | 142 | (sno) local_addres=130.75.105.113; local_host=lcmuk;; |
---|
[5] | 143 | (levanto) local_addres=130.75.105.45; local_host=lcmuk;; |
---|
[1040] | 144 | (login*) local_addres=118.128.66.223; local_host=lckiaps;; |
---|
[5] | 145 | (maestro) local_addres=130.75.105.2; local_host=lcmuk;; |
---|
[437] | 146 | (meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;; |
---|
[892] | 147 | (hexagon*) local_addres=129.177.20.113; local_host=lcxe6;; |
---|
[1] | 148 | (nobel*) local_addres=150.183.5.101; local_host=ibms;; |
---|
[5] | 149 | (orkan) local_addres=130.75.105.3; local_host=lcmuk;; |
---|
| 150 | (ostria) local_addres=130.75.105.106; local_host=lcmuk;; |
---|
[205] | 151 | (paesano) local_addres=130.75.105.46; local_host=lcmuk;; |
---|
[789] | 152 | (pingui) local_addres=134.106.74.118; local_host=lcfor;; |
---|
[5] | 153 | (quanero) local_addres=130.75.105.107; local_host=lcmuk;; |
---|
[622] | 154 | (rte*) local_addres=133.5.185.60; local_host=lcrte;; |
---|
[1] | 155 | (scirocco) local_addres=172.20.25.41; local_host=lcmuk;; |
---|
[799] | 156 | (solano) local_addres=130.75.105.110; local_host=lcmuk;; |
---|
[1090] | 157 | (sugoka*) local_addres=172.31.120.1; local_host=lckyut;; |
---|
[1] | 158 | (sun1|sun2) local_addres=130.75.6.1; local_host=unics;; |
---|
[259] | 159 | (sx-*) local_addres=172.16.1.131; local_host=necriam;; |
---|
[181] | 160 | (r1*) local_addres=130.75.4.102; local_host=lcsgih;; |
---|
[196] | 161 | (r2*) local_addres=130.73.232.102; local_host=lcsgib;; |
---|
[635] | 162 | (t2a*) local_addres=10.1.6.165; local_host=lctit;; |
---|
[1021] | 163 | (urban*) local_addres=147.46.30.151 local_host=lcsb;; |
---|
[1] | 164 | (vorias) local_addres=172.20.25.43; local_host=lcmuk;; |
---|
[622] | 165 | (*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;; |
---|
[1] | 166 | (*) printf "\n +++ \"$local_host\" unknown"; |
---|
| 167 | printf "\n please inform S. Raasch!"; |
---|
| 168 | locat=parameter; exit;; |
---|
| 169 | esac |
---|
| 170 | |
---|
| 171 | |
---|
| 172 | |
---|
| 173 | # REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN |
---|
| 174 | remote_host=$local_host |
---|
| 175 | |
---|
| 176 | |
---|
| 177 | |
---|
| 178 | |
---|
| 179 | # PROZEDUROPTIONEN EINLESEN |
---|
[352] | 180 | while getopts :c:dDe:g:h:m:n:N:O:q:t:T:u:vX: option |
---|
[1] | 181 | do |
---|
| 182 | case $option in |
---|
| 183 | (c) job_catalog=$OPTARG;; |
---|
| 184 | (d) delete_dayfile=true;; |
---|
| 185 | (D) no_submit=true;; |
---|
[352] | 186 | (e) email_notification=$OPTARG;; |
---|
[125] | 187 | (g) group_number=$OPTARG;; |
---|
[1] | 188 | (h) remote_host=$OPTARG;; |
---|
| 189 | (m) memory=$OPTARG;; |
---|
| 190 | (n) job_name=$OPTARG;; |
---|
| 191 | (N) node_usage=$OPTARG;; |
---|
| 192 | (O) threads_per_task=$OPTARG;; |
---|
| 193 | (q) no_default_queue=$OPTARG;; |
---|
| 194 | (t) cputime=$OPTARG;; |
---|
| 195 | (T) tasks_per_node=$OPTARG;; |
---|
| 196 | (u) remote_user=$OPTARG;; |
---|
| 197 | (v) verify=false;; |
---|
| 198 | (X) numprocs=$OPTARG;; |
---|
| 199 | (\?) printf "\n +++ Option $OPTARG unknown \n"; |
---|
| 200 | locat=option; exit;; |
---|
| 201 | esac |
---|
| 202 | done |
---|
| 203 | |
---|
| 204 | |
---|
| 205 | # JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN |
---|
| 206 | shift OPTIND-1; file_to_send=$1 |
---|
| 207 | |
---|
| 208 | |
---|
| 209 | # KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN |
---|
| 210 | if [ "$1" = "?" ] |
---|
| 211 | then |
---|
| 212 | (printf "\n *** subjob can be called as follows:\n" |
---|
| 213 | printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n" |
---|
| 214 | printf "\n Description of available options:\n" |
---|
| 215 | printf "\n Option Description Default-Value" |
---|
| 216 | printf "\n -c job-input- and output-catalog ~/job_queue" |
---|
| 217 | printf "\n -d no job-protocol will be created ---" |
---|
| 218 | printf "\n -D only the job-file will be created ---" |
---|
| 219 | printf "\n -h execution host, available hosts: $remote_host" |
---|
[693] | 220 | printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, ibmy, lc...," |
---|
[1040] | 221 | printf "\n lckiaps, lctit, nech, necriam, unics" |
---|
[1] | 222 | printf "\n -m memory demand per process in MByte ---" |
---|
| 223 | printf "\n -n jobname <jobdatei>" |
---|
| 224 | printf "\n -O threads per task (for OpenMP usage) 1" |
---|
| 225 | printf "\n -q job-queue to be used default" |
---|
| 226 | printf "\n -t allowed cpu-time in seconds ---" |
---|
| 227 | printf "\n -T tasks per node (on parallel hosts) ---" |
---|
| 228 | printf "\n -u username on execution host from .netrc" |
---|
| 229 | printf "\n -v no prompt for confirmation ---" |
---|
| 230 | printf "\n -X # of processors (on parallel hosts) 1" |
---|
| 231 | printf "\n " |
---|
| 232 | printf "\n The only possible positional parameter is <jobfile>:" |
---|
| 233 | printf "\n The complete NQS-job must be provided here." |
---|
| 234 | printf "\n <jobfile>=? creates this outline\n\n") | more |
---|
| 235 | exit |
---|
| 236 | fi |
---|
| 237 | |
---|
| 238 | |
---|
| 239 | |
---|
| 240 | # PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT |
---|
| 241 | if [[ "$file_to_send" = "" ]] |
---|
| 242 | then |
---|
| 243 | printf "\n +++ job-file missing" |
---|
| 244 | locat=parameter; exit |
---|
| 245 | else |
---|
| 246 | if [[ -f $file_to_send ]] |
---|
| 247 | then |
---|
| 248 | true |
---|
| 249 | else |
---|
| 250 | printf "\n +++ job-file: " |
---|
| 251 | printf "\n $file_to_send" |
---|
| 252 | printf "\n does not exist" |
---|
| 253 | locat=parameter; exit |
---|
| 254 | fi |
---|
| 255 | fi |
---|
| 256 | |
---|
| 257 | |
---|
| 258 | |
---|
| 259 | # FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME |
---|
| 260 | # GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE |
---|
| 261 | if [[ $job_name = none ]] |
---|
| 262 | then |
---|
| 263 | job_name=$file_to_send |
---|
| 264 | fi |
---|
| 265 | if [[ $(echo $job_name | grep -c "/") != 0 ]] |
---|
| 266 | then |
---|
| 267 | printf "\n +++ job-file name: " |
---|
| 268 | printf "\n $job_name" |
---|
| 269 | printf "\n must not contain \"/\"-characters" |
---|
| 270 | locat=parameter; exit |
---|
| 271 | fi |
---|
| 272 | |
---|
| 273 | |
---|
| 274 | |
---|
| 275 | |
---|
| 276 | # HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST |
---|
| 277 | # ODER WENN HOST NICHT ANGEGEBEN WURDE |
---|
| 278 | if [[ $remote_host = none ]] |
---|
| 279 | then |
---|
| 280 | printf "\n +++ host missing" |
---|
| 281 | locat=option; exit |
---|
| 282 | else |
---|
| 283 | case $remote_host in |
---|
[251] | 284 | (ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;; |
---|
[312] | 285 | (ibmh) queue=no_class; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;; |
---|
[693] | 286 | (ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;; |
---|
[622] | 287 | (ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;; |
---|
[251] | 288 | (ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;; |
---|
| 289 | (ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;; |
---|
| 290 | (lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;; |
---|
[440] | 291 | (lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;; |
---|
[540] | 292 | (lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;; |
---|
| 293 | (lcsgih) queue=smallq; remote_addres=130.75.4.101; submcom=/opt/moab/bin/msub;; |
---|
[367] | 294 | (lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;; |
---|
[1040] | 295 | (lckiaps) remote_addres=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;; |
---|
[717] | 296 | (lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;; |
---|
[1090] | 297 | (lckyut) remote_addres=133.5.4.37; submcom=/usr/bin/pjsub;; |
---|
[1021] | 298 | (lcsb) remote_addres=147.46.30.151; submcom=/usr/torque/bin/qsub;; |
---|
[635] | 299 | (lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;; |
---|
[892] | 300 | (lcxe6) remote_addres=129.177.20.113; submcom=/opt/torque/2.5.10/bin/qsub;; |
---|
[437] | 301 | (lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;; |
---|
[693] | 302 | (lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;; |
---|
[251] | 303 | (nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";; |
---|
| 304 | (necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";; |
---|
| 305 | (vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;; |
---|
| 306 | (unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;; |
---|
| 307 | (*) printf "\n +++ hostname \"$remote_host\" not allowed"; |
---|
| 308 | locat=parameter; exit;; |
---|
[1] | 309 | esac |
---|
| 310 | fi |
---|
| 311 | |
---|
| 312 | |
---|
| 313 | # EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST |
---|
| 314 | if [[ $no_default_queue != none ]] |
---|
| 315 | then |
---|
| 316 | error=false |
---|
| 317 | ndq=$no_default_queue |
---|
| 318 | case $remote_host in |
---|
| 319 | (ibm) case $ndq in |
---|
| 320 | (p690_express|p690_standard|p690_long) error=false;; |
---|
| 321 | (*) error=true;; |
---|
| 322 | esac;; |
---|
| 323 | (ibmh) case $ndq in |
---|
[312] | 324 | (no_class) error=false;; |
---|
[1] | 325 | (*) error=true;; |
---|
| 326 | esac;; |
---|
[693] | 327 | (ibmkisti) case $ndq in |
---|
| 328 | (class.32plus|class.1-2|class.2-32) error=false;; |
---|
| 329 | (*) error=true;; |
---|
| 330 | esac;; |
---|
[622] | 331 | (ibmku) case $ndq in |
---|
| 332 | (sdbg1|sdbg2|sdbg4|s4|s16|s32|s32-s) error=false;; |
---|
| 333 | (*) error=true;; |
---|
| 334 | esac;; |
---|
[1] | 335 | (ibms) case $ndq in |
---|
| 336 | (express|normal|p_express|p_normal|p_normal_1.3|p_normal_1.7|grand) error=false;; |
---|
| 337 | (*) error=true;; |
---|
| 338 | esac;; |
---|
| 339 | (ibmy) case $ndq in |
---|
| 340 | (parallel) error=false;; |
---|
| 341 | (*) error=true;; |
---|
| 342 | esac;; |
---|
[1040] | 343 | (lckiaps) case $ndq in |
---|
| 344 | (express|normal) error=false;; |
---|
| 345 | (*) error=true;; |
---|
| 346 | esac;; |
---|
[440] | 347 | (lckyoto) case $ndq in |
---|
| 348 | (eh|ph) error=false;; |
---|
| 349 | (*) error=true;; |
---|
| 350 | esac;; |
---|
[1090] | 351 | (lckyut) case $ndq in |
---|
| 352 | (cx-dbg|cx-single|cx-small|cx-middle|cx-large) error=false;; |
---|
| 353 | (*) error=true;; |
---|
| 354 | esac;; |
---|
[191] | 355 | (lcsgib|lcsgih) case $ndq in |
---|
[416] | 356 | (testq|serialq|smallq|mediumq|bigq|workq|dataq|permq|special1q) error=false;; |
---|
[191] | 357 | (*) error=true;; |
---|
| 358 | esac;; |
---|
[1] | 359 | (lctit) case $ndq in |
---|
[635] | 360 | (G|L128|L256|L512H|S|S96|V) error=false;; |
---|
[1] | 361 | (*) error=true;; |
---|
| 362 | esac;; |
---|
| 363 | (t3eb) case $ndq in |
---|
| 364 | (berte|p50|p100|p392|forfree|p25himem) error=false;; |
---|
| 365 | (*) error=true;; |
---|
| 366 | esac;; |
---|
[251] | 367 | (necriam) case $ndq in |
---|
[253] | 368 | (SP|SS|P6) error=false;; |
---|
[251] | 369 | (*) error=true;; |
---|
| 370 | esac;; |
---|
[1] | 371 | (t3eh) case $ndq in |
---|
| 372 | (para_t3e|em|k|l|lm|comp_t3e|c|p|ht) error=false;; |
---|
| 373 | (*) error=true;; |
---|
| 374 | esac;; |
---|
| 375 | (t3ej2|t3ej5) case $ndq in |
---|
| 376 | (low|normal|high) error=false;; |
---|
| 377 | (*) error=true;; |
---|
| 378 | esac;; |
---|
| 379 | (t3es) case $ndq in |
---|
| 380 | (batch|serial-4|pe4|p48|pe16|pe32|pe64|pe128) error=false;; |
---|
| 381 | (*) error=true;; |
---|
| 382 | esac;; |
---|
| 383 | (unics) case $ndq in |
---|
| 384 | (unics|ht) error=false;; |
---|
| 385 | (*) error=true;; |
---|
| 386 | esac;; |
---|
| 387 | esac |
---|
| 388 | if [[ $error = true ]] |
---|
| 389 | then |
---|
| 390 | printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed" |
---|
| 391 | locat=parameter; exit |
---|
| 392 | else |
---|
| 393 | queue=$no_default_queue |
---|
| 394 | fi |
---|
| 395 | fi |
---|
| 396 | |
---|
| 397 | |
---|
| 398 | |
---|
| 399 | # PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN |
---|
| 400 | # AUFTEILEN |
---|
| 401 | done=false |
---|
| 402 | while [[ $done = false ]] |
---|
| 403 | do |
---|
| 404 | if (( $cputime <= 0 )) |
---|
| 405 | then |
---|
| 406 | printf "\n +++ wrong cpu-time or cpu-time missing" |
---|
| 407 | printf "\n >>> Please type cpu-time in seconds as INTEGER:" |
---|
| 408 | printf "\n >>> " |
---|
| 409 | read cputime 1>/dev/null 2>&1 |
---|
| 410 | else |
---|
| 411 | done=true |
---|
| 412 | fi |
---|
| 413 | done |
---|
| 414 | if [[ $remote_host = nech ]] |
---|
| 415 | then |
---|
| 416 | if (( tasks_per_node != 0 )) |
---|
| 417 | then |
---|
| 418 | (( cputime = cputime * tasks_per_node )) |
---|
| 419 | elif [[ $numprocs != 0 ]] |
---|
| 420 | then |
---|
| 421 | (( cputime = cputime * numprocs )) |
---|
| 422 | fi |
---|
| 423 | fi |
---|
| 424 | (( stunden = cputime / 3600 )) |
---|
| 425 | (( resttime = cputime - stunden * 3600 )) |
---|
| 426 | (( minuten = resttime / 60 )) |
---|
| 427 | (( sekunden = resttime - minuten * 60 )) |
---|
| 428 | timestring=${stunden}:${minuten}:${sekunden} |
---|
| 429 | |
---|
| 430 | |
---|
| 431 | |
---|
| 432 | # PRUEFEN DER KERNSPEICHERANFORDERUNG |
---|
| 433 | done=false |
---|
| 434 | while [[ $done = false ]] |
---|
| 435 | do |
---|
| 436 | if (( memory <= 0 )) |
---|
| 437 | then |
---|
| 438 | printf "\n +++ wrong memory demand or memory demand missing" |
---|
| 439 | printf "\n >>> Please type memory in MByte per process as INTEGER:" |
---|
| 440 | printf "\n >>> " |
---|
| 441 | read memory 1>/dev/null 2>&1 |
---|
| 442 | else |
---|
| 443 | done=true |
---|
| 444 | fi |
---|
| 445 | done |
---|
| 446 | |
---|
[251] | 447 | if [[ $remote_host = nech || $remote_host = necriam ]] |
---|
[1] | 448 | then |
---|
| 449 | if (( tasks_per_node != 0 )) |
---|
| 450 | then |
---|
| 451 | (( Memory = memory * tasks_per_node / 1000 )) |
---|
| 452 | elif [[ $numprocs != 0 ]] |
---|
| 453 | then |
---|
| 454 | (( Memory = memory * numprocs / 1000 )) |
---|
| 455 | else |
---|
| 456 | (( Memory = memory / 1000 )) |
---|
| 457 | fi |
---|
[635] | 458 | elif [[ $remote_host = lctit ]] |
---|
| 459 | then |
---|
| 460 | (( Memory = memory * tasks_per_node / 1000 )) |
---|
[1] | 461 | fi |
---|
| 462 | |
---|
| 463 | |
---|
| 464 | # SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG |
---|
| 465 | if [[ $(echo $remote_host | cut -c1-3) = ibm ]] |
---|
| 466 | then |
---|
| 467 | (( memory = memory * threads_per_task )) |
---|
| 468 | fi |
---|
| 469 | |
---|
| 470 | |
---|
| 471 | # BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN |
---|
| 472 | if (( tasks_per_node != 0 )) |
---|
| 473 | then |
---|
[622] | 474 | (( nodes = numprocs / ( tasks_per_node * threads_per_task ) )) |
---|
[1] | 475 | fi |
---|
| 476 | |
---|
[622] | 477 | # Calculate number of processes per node |
---|
| 478 | (( processes_per_node = tasks_per_node * threads_per_task )) |
---|
[1] | 479 | |
---|
[696] | 480 | # Calculate number of MPI tasks |
---|
| 481 | (( mpi_tasks = numprocs / threads_per_task )) |
---|
[1] | 482 | |
---|
[696] | 483 | |
---|
[1] | 484 | # HEADER-AUSGABE |
---|
| 485 | if [[ $verify = true ]] |
---|
| 486 | then |
---|
| 487 | printf "\n\n" |
---|
| 488 | printf "#--------------------------------------------------------------# \n" |
---|
| 489 | spalte1=SUBJOB;spalte2=$(date) |
---|
| 490 | printf "| $spalte1$spalte2 | \n" |
---|
| 491 | printf "| | \n" |
---|
| 492 | printf "| values of parameters/options: | \n" |
---|
| 493 | spalte1=local_host$punkte; spalte2=$punkte$local_host |
---|
| 494 | printf "| $spalte1$spalte2 | \n" |
---|
| 495 | spalte1=remote_host$punkte; spalte2=$punkte$remote_host |
---|
| 496 | printf "| $spalte1$spalte2 | \n" |
---|
| 497 | spalte1=queue$punkte; spalte2=$punkte$queue |
---|
| 498 | printf "| $spalte1$spalte2 | \n" |
---|
| 499 | spalte1=memory$punkte; spalte2="$punkte$memory mb" |
---|
| 500 | printf "| $spalte1$spalte2 | \n" |
---|
| 501 | spalte1=cputime$punkte; spalte2="$punkte$cputime sec" |
---|
| 502 | printf "| $spalte1$spalte2 | \n" |
---|
| 503 | spalte1=job_name$punkte; spalte2="$punkte$job_name" |
---|
| 504 | printf "| $spalte1$spalte2 | \n" |
---|
| 505 | printf "#--------------------------------------------------------------# \n\n" |
---|
| 506 | |
---|
| 507 | |
---|
| 508 | # KONTROLLABFRAGE, OB ALLES O.K. |
---|
| 509 | antwort="dummy" |
---|
| 510 | while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]] |
---|
| 511 | do |
---|
| 512 | read antwort?" >>> continue (y/n) ? " |
---|
| 513 | done |
---|
| 514 | if [[ $antwort = n || $antwort = N ]] |
---|
| 515 | then |
---|
| 516 | locat=verify; exit |
---|
| 517 | fi |
---|
| 518 | printf "\n" |
---|
| 519 | fi |
---|
| 520 | |
---|
| 521 | |
---|
| 522 | |
---|
| 523 | # ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN |
---|
| 524 | kennung=$RANDOM |
---|
| 525 | job_on_remhost=${job_name}_${kennung}_$local_host |
---|
| 526 | job_to_send=job_to_send_$kennung |
---|
| 527 | if [[ $delete_dayfile = false ]] |
---|
| 528 | then |
---|
| 529 | remote_dayfile=${local_host}_${job_name}_result_$kennung |
---|
| 530 | local_dayfile=${remote_host}_${job_name} |
---|
| 531 | else |
---|
| 532 | remote_dayfile=/dev/null |
---|
| 533 | fi |
---|
| 534 | |
---|
| 535 | |
---|
| 536 | |
---|
[622] | 537 | # Generate the batch job scripts (qsub/msub/LoadLeveler) |
---|
[1] | 538 | if [[ $(echo $remote_host | cut -c1-3) = ibm && $numprocs != 0 ]] |
---|
| 539 | then |
---|
| 540 | |
---|
[622] | 541 | # General LoadLeveler settings |
---|
| 542 | execute_in_shell="#!/bin/ksh" |
---|
| 543 | use_shell="# @ shell = /bin/ksh" |
---|
| 544 | consumable_memory="ConsumableMemory($memory mb)" |
---|
| 545 | class="# @ class = $queue" |
---|
| 546 | environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes" |
---|
| 547 | network_to_use="# @ network.mpi = sn_all,shared,us" |
---|
| 548 | data_limit="# @ data_limit = 1.76gb" |
---|
| 549 | image_size="# @ image_size = 50" |
---|
[693] | 550 | wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring" |
---|
[312] | 551 | |
---|
[693] | 552 | if [[ $email_notification = none ]] |
---|
| 553 | then |
---|
| 554 | notify_user="" |
---|
| 555 | else |
---|
| 556 | notify_user="# @ notify_user = $email_notification" |
---|
| 557 | if [[ $delete_dayfile = true ]] |
---|
| 558 | then |
---|
| 559 | notification='# @ notification = never' |
---|
| 560 | fi |
---|
| 561 | fi |
---|
[622] | 562 | |
---|
[312] | 563 | if [[ $remote_host = ibmh ]] |
---|
[1] | 564 | then |
---|
[312] | 565 | data_limit="" |
---|
| 566 | network_to_use="" |
---|
| 567 | class="" |
---|
| 568 | environment="" |
---|
[814] | 569 | rset="# @ rset = RSET_MCM_AFFINITY" |
---|
| 570 | task_affinity="# @ task_affinity = core(1)" |
---|
[693] | 571 | elif [[ $remote_host = ibmkisti ]] |
---|
| 572 | then |
---|
| 573 | network_to_use="# @ network.MPI = sn_all,shared,US" |
---|
| 574 | wall_clock_limit="# @ wall_clock_limit = $timestring" |
---|
[696] | 575 | if [[ $threads_per_task = 1 ]] |
---|
| 576 | then |
---|
| 577 | rset="# @ rset = RSET_MCM_AFFINITY" |
---|
| 578 | mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute" |
---|
| 579 | fi |
---|
[693] | 580 | environment="" |
---|
| 581 | use_shell="" |
---|
| 582 | data_limit="" |
---|
| 583 | image_size="" |
---|
[622] | 584 | elif [[ $remote_host = ibmku ]] |
---|
| 585 | then |
---|
| 586 | execute_in_shell="#!/usr/bin/ksh" |
---|
| 587 | use_shell="# @ shell = /usr/bin/ksh" |
---|
| 588 | consumable_memory="" |
---|
| 589 | environment="" |
---|
| 590 | network_to_use="# @ network.mpi = sn_all,shared,us" |
---|
| 591 | data_limit="" |
---|
| 592 | image_size="" |
---|
| 593 | elif [[ $remote_host = ibms ]] |
---|
| 594 | then |
---|
| 595 | network_to_use="# @ network.mpi = csss,shared,us" |
---|
| 596 | elif [[ $remote_host = ibmy ]] |
---|
| 597 | then |
---|
| 598 | consumable_memory="" |
---|
| 599 | network_to_use="" |
---|
[1] | 600 | fi |
---|
| 601 | |
---|
| 602 | cat > $job_to_send << %%END%% |
---|
[622] | 603 | $execute_in_shell |
---|
| 604 | $use_shell |
---|
[1] | 605 | |
---|
| 606 | # @ job_type = parallel |
---|
[693] | 607 | # @ job_name = $job_name |
---|
[1] | 608 | # @ resources = ConsumableCpus($threads_per_task) $consumable_memory |
---|
| 609 | # @ output = $remote_dayfile |
---|
| 610 | # @ error = $remote_dayfile |
---|
[693] | 611 | $wall_clock_limit |
---|
[622] | 612 | $image_size |
---|
[312] | 613 | $class |
---|
| 614 | $environment |
---|
[1] | 615 | $network_to_use |
---|
| 616 | $data_limit |
---|
[693] | 617 | $rset |
---|
| 618 | $mcm_affinity_options |
---|
[814] | 619 | $task_affinity |
---|
[1] | 620 | $notification |
---|
[693] | 621 | $notify_user |
---|
[1] | 622 | |
---|
| 623 | %%END%% |
---|
| 624 | |
---|
| 625 | if (( nodes > 0 )) |
---|
| 626 | then |
---|
| 627 | |
---|
[693] | 628 | if [[ $remote_host != ibmkisti ]] |
---|
| 629 | then |
---|
| 630 | |
---|
| 631 | cat >> $job_to_send << %%END%% |
---|
[1] | 632 | # @ node = $nodes |
---|
[622] | 633 | # @ tasks_per_node = $processes_per_node |
---|
[1] | 634 | # @ node_usage = $node_usage |
---|
| 635 | # @ queue |
---|
| 636 | |
---|
| 637 | %%END%% |
---|
| 638 | |
---|
[693] | 639 | else |
---|
| 640 | |
---|
| 641 | cat >> $job_to_send << %%END%% |
---|
[696] | 642 | # @ total_tasks = $mpi_tasks |
---|
[693] | 643 | # @ blocking = unlimited |
---|
| 644 | # @ queue |
---|
| 645 | |
---|
| 646 | %%END%% |
---|
| 647 | |
---|
| 648 | fi |
---|
| 649 | |
---|
[1] | 650 | else |
---|
| 651 | |
---|
| 652 | if [[ $remote_host != ibmy ]] |
---|
| 653 | then |
---|
| 654 | |
---|
| 655 | cat >> $job_to_send << %%END%% |
---|
| 656 | # @ blocking = unlimited |
---|
| 657 | # @ total_tasks = $numprocs |
---|
| 658 | # @ node_usage = $node_usage |
---|
| 659 | # @ queue |
---|
| 660 | |
---|
| 661 | %%END%% |
---|
| 662 | |
---|
| 663 | else |
---|
| 664 | |
---|
| 665 | cat >> $job_to_send << %%END%% |
---|
| 666 | # @ node = 1 |
---|
| 667 | # @ total_tasks = $numprocs |
---|
| 668 | # @ queue |
---|
| 669 | |
---|
| 670 | %%END%% |
---|
| 671 | |
---|
| 672 | fi |
---|
| 673 | |
---|
| 674 | fi |
---|
| 675 | |
---|
[696] | 676 | # workaround because of silly job filter on ibmkisti |
---|
| 677 | if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]] |
---|
| 678 | then |
---|
| 679 | echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send |
---|
| 680 | fi |
---|
| 681 | |
---|
[1] | 682 | elif [[ $(echo $remote_host | cut -c1-3) = ibm && $numprocs = 0 ]] |
---|
| 683 | then |
---|
| 684 | |
---|
| 685 | cat > $job_to_send << %%END%% |
---|
| 686 | #!/bin/ksh |
---|
| 687 | |
---|
| 688 | # @ job_type = serial |
---|
| 689 | # @ node_usage = $node_usage |
---|
| 690 | # @ job_name = palm |
---|
| 691 | # @ wall_clock_limit = ${timestring},$timestring |
---|
| 692 | # @ resources = ConsumableCpus(1) ConsumableMemory(1 gb) |
---|
| 693 | # @ output = $remote_dayfile |
---|
| 694 | # @ error = $remote_dayfile |
---|
[312] | 695 | $class |
---|
[1] | 696 | $notification |
---|
| 697 | |
---|
| 698 | # @ queue |
---|
| 699 | |
---|
| 700 | %%END%% |
---|
| 701 | |
---|
[108] | 702 | elif [[ $remote_host = lcfimm ]] |
---|
| 703 | then |
---|
| 704 | |
---|
| 705 | if [[ $numprocs != 0 ]] |
---|
| 706 | then |
---|
| 707 | cat > $job_to_send << %%END%% |
---|
| 708 | #!/bin/ksh |
---|
| 709 | #PBS -N $job_name |
---|
[552] | 710 | #PBS -A $project_account |
---|
[108] | 711 | #PBS -l walltime=$timestring |
---|
[622] | 712 | #PBS -l nodes=${nodes}:ppn=$processes_per_node |
---|
[108] | 713 | #PBS -l pmem=${memory}mb |
---|
| 714 | #PBS -m abe |
---|
| 715 | #PBS -o $remote_dayfile |
---|
| 716 | #PBS -j oe |
---|
| 717 | mpd & |
---|
| 718 | |
---|
| 719 | %%END%% |
---|
| 720 | |
---|
[168] | 721 | else |
---|
| 722 | cat > $job_to_send << %%END%% |
---|
| 723 | #!/bin/ksh |
---|
| 724 | #PBS -N $job_name |
---|
[552] | 725 | #PBS -A $project_account |
---|
[168] | 726 | #PBS -l walltime=$timestring |
---|
| 727 | #PBS -l ncpus=1 |
---|
| 728 | #PBS -l pmem=${memory}mb |
---|
| 729 | #PBS -m abe |
---|
| 730 | #PBS -o $remote_dayfile |
---|
| 731 | #PBS -j oe |
---|
| 732 | |
---|
| 733 | %%END%% |
---|
| 734 | |
---|
| 735 | fi |
---|
| 736 | |
---|
[1021] | 737 | elif [[ $remote_host = lck || $remote_host = lckordi || $remote_host = lcsb ]] |
---|
[368] | 738 | then |
---|
| 739 | |
---|
| 740 | if [[ $numprocs != 0 ]] |
---|
| 741 | then |
---|
| 742 | cat > $job_to_send << %%END%% |
---|
| 743 | #!/bin/ksh |
---|
| 744 | #PBS -N $job_name |
---|
| 745 | #PBS -l walltime=$timestring |
---|
| 746 | #PBS -l ncpus=$numprocs |
---|
| 747 | #PBS -l pmem=${memory}mb |
---|
| 748 | #PBS -o $remote_dayfile |
---|
[1021] | 749 | #PBS -l nodes=$nodes:ppn=${processes_per_node} |
---|
[368] | 750 | #PBS -j oe |
---|
| 751 | |
---|
| 752 | mpd & |
---|
| 753 | |
---|
| 754 | %%END%% |
---|
| 755 | |
---|
| 756 | else |
---|
| 757 | cat > $job_to_send << %%END%% |
---|
| 758 | #!/bin/ksh |
---|
| 759 | #PBS -N $job_name |
---|
| 760 | #PBS -l walltime=$timestring |
---|
| 761 | #PBS -l ncpus=1 |
---|
| 762 | #PBS -l pmem=${memory}mb |
---|
| 763 | #PBS -o $remote_dayfile |
---|
| 764 | #PBS -j oe |
---|
| 765 | |
---|
| 766 | %%END%% |
---|
| 767 | |
---|
| 768 | fi |
---|
| 769 | |
---|
[1040] | 770 | elif [[ $remote_host = lckiaps ]] |
---|
| 771 | then |
---|
| 772 | |
---|
| 773 | if [[ $numprocs != 0 ]] |
---|
| 774 | then |
---|
| 775 | cat > $job_to_send << %%END%% |
---|
| 776 | #!/bin/ksh |
---|
| 777 | #PBS -N $job_name |
---|
| 778 | #PBS -l walltime=$timestring |
---|
| 779 | #PBS -l select=1:ncpus=$numprocs |
---|
| 780 | #PBS -l pmem=${memory}mb |
---|
| 781 | #PBS -q $queue |
---|
| 782 | #PBS -o $remote_dayfile |
---|
| 783 | #PBS -j oe |
---|
| 784 | #PBS -V |
---|
| 785 | |
---|
| 786 | %%END%% |
---|
| 787 | |
---|
| 788 | else |
---|
| 789 | cat > $job_to_send << %%END%% |
---|
| 790 | #!/bin/ksh |
---|
| 791 | #PBS -N $job_name |
---|
| 792 | #PBS -l walltime=$timestring |
---|
| 793 | #PBS -l ncpus=1 |
---|
| 794 | #PBS -l pmem=${memory}mb |
---|
| 795 | #PBS -o $remote_dayfile |
---|
| 796 | #PBS -j oe |
---|
| 797 | |
---|
| 798 | %%END%% |
---|
| 799 | |
---|
| 800 | fi |
---|
| 801 | |
---|
[693] | 802 | elif [[ $remote_host = lcyon ]] |
---|
| 803 | then |
---|
| 804 | |
---|
| 805 | if [[ $numprocs != 0 ]] |
---|
| 806 | then |
---|
| 807 | cat > $job_to_send << %%END%% |
---|
| 808 | #!/bin/ksh |
---|
| 809 | #PBS -N $job_name |
---|
| 810 | #PBS -l walltime=$timestring |
---|
| 811 | #PBS -l ncpus=$numprocs |
---|
| 812 | #PBS -l pmem=${memory}mb |
---|
| 813 | #PBS -o $remote_dayfile |
---|
| 814 | #PBS -j oe |
---|
| 815 | |
---|
| 816 | %%END%% |
---|
| 817 | |
---|
| 818 | else |
---|
| 819 | cat > $job_to_send << %%END%% |
---|
| 820 | #!/bin/ksh |
---|
| 821 | #PBS -N $job_name |
---|
| 822 | #PBS -l walltime=$timestring |
---|
| 823 | #PBS -l ncpus=1 |
---|
| 824 | #PBS -l pmem=${memory}mb |
---|
| 825 | #PBS -o $remote_dayfile |
---|
| 826 | #PBS -j oe |
---|
| 827 | |
---|
| 828 | %%END%% |
---|
| 829 | |
---|
| 830 | fi |
---|
| 831 | |
---|
[181] | 832 | elif [[ $remote_host = lcsgih || $remote_host = lcsgib ]] |
---|
[179] | 833 | then |
---|
| 834 | |
---|
[376] | 835 | if [[ "$sgi_feature" != "" ]] |
---|
| 836 | then |
---|
| 837 | feature_directive="#PBS -l feature=$sgi_feature" |
---|
| 838 | else |
---|
| 839 | feature_directive="" |
---|
| 840 | fi |
---|
[799] | 841 | |
---|
[416] | 842 | if [[ $queue = dataq || $queue = permq ]] |
---|
[399] | 843 | then |
---|
| 844 | feature_directive="#PBS -l feature=data" |
---|
| 845 | fi |
---|
[376] | 846 | |
---|
[789] | 847 | if [[ $queue = testq || $queue = mediumq || $queue = bigq || $queue = workq || $queue = dataq || $queue = permq || $queue = serialq || $queue = special1q ]] |
---|
[191] | 848 | then |
---|
| 849 | queue_directive="#PBS -q $queue" |
---|
| 850 | else |
---|
| 851 | queue_directive="" |
---|
| 852 | fi |
---|
| 853 | |
---|
[352] | 854 | if [[ $email_notification = none ]] |
---|
| 855 | then |
---|
| 856 | email_directive="" |
---|
| 857 | else |
---|
| 858 | email_directive="#PBS -M $email_notification" |
---|
| 859 | fi |
---|
| 860 | |
---|
[179] | 861 | if [[ $numprocs != 0 ]] |
---|
| 862 | then |
---|
| 863 | cat > $job_to_send << %%END%% |
---|
[181] | 864 | #!/bin/bash |
---|
[179] | 865 | #PBS -N $job_name |
---|
| 866 | #PBS -l walltime=$timestring |
---|
[622] | 867 | #PBS -l nodes=$nodes:ppn=${processes_per_node} |
---|
[181] | 868 | #PBS -l naccesspolicy=$node_usage |
---|
[179] | 869 | #PBS -o $remote_dayfile |
---|
| 870 | #PBS -j oe |
---|
[376] | 871 | $feature_directive |
---|
[191] | 872 | $queue_directive |
---|
[352] | 873 | $email_directive |
---|
[179] | 874 | |
---|
[622] | 875 | eval \`/sw/swdist/bin/modulesinit\` |
---|
| 876 | #. /usr/share/modules/init/bash |
---|
[892] | 877 | $init_cmds |
---|
[493] | 878 | $module_calls |
---|
[374] | 879 | |
---|
[181] | 880 | echo ld_library_path=\$LD_LIBRARY_PATH |
---|
[179] | 881 | |
---|
| 882 | %%END%% |
---|
| 883 | |
---|
| 884 | else |
---|
| 885 | cat > $job_to_send << %%END%% |
---|
| 886 | #PBS -S /bin/bash |
---|
| 887 | #PBS -N $job_name |
---|
| 888 | #PBS -l walltime=$timestring |
---|
| 889 | #PBS -l ncpus=1 |
---|
| 890 | #PBS -o $remote_dayfile |
---|
[475] | 891 | #PBS -j oe |
---|
[400] | 892 | $queue_directive |
---|
| 893 | $email_directive |
---|
[179] | 894 | |
---|
[622] | 895 | eval \`/sw/swdist/bin/modulesinit\` |
---|
| 896 | #. /usr/share/modules/init/bash |
---|
[892] | 897 | $init_cmds |
---|
[493] | 898 | $module_calls |
---|
[475] | 899 | |
---|
[179] | 900 | %%END%% |
---|
| 901 | |
---|
| 902 | fi |
---|
| 903 | |
---|
[892] | 904 | elif [[ $remote_host = lcxe6 ]] |
---|
[164] | 905 | then |
---|
| 906 | |
---|
| 907 | if [[ $numprocs != 0 ]] |
---|
| 908 | then |
---|
| 909 | cat > $job_to_send << %%END%% |
---|
[799] | 910 | #!/bin/ksh |
---|
[164] | 911 | #PBS -S /bin/ksh |
---|
| 912 | #PBS -N $job_name |
---|
[552] | 913 | #PBS -A $project_account |
---|
[206] | 914 | #PBS -j oe |
---|
[164] | 915 | #PBS -l walltime=$timestring |
---|
| 916 | #PBS -l mppwidth=${numprocs} |
---|
[622] | 917 | #PBS -l mppnppn=${processes_per_node} |
---|
[164] | 918 | #PBS -m abe |
---|
| 919 | #PBS -o $remote_dayfile |
---|
[492] | 920 | $email_directive |
---|
[164] | 921 | |
---|
[892] | 922 | $init_cmds |
---|
[493] | 923 | $module_calls |
---|
[343] | 924 | |
---|
[164] | 925 | %%END%% |
---|
| 926 | |
---|
[108] | 927 | else |
---|
| 928 | cat > $job_to_send << %%END%% |
---|
| 929 | #!/bin/ksh |
---|
[168] | 930 | #PBS -S /bin/ksh |
---|
[108] | 931 | #PBS -N $job_name |
---|
[552] | 932 | #PBS -A $project_account |
---|
[206] | 933 | #PBS -j oe |
---|
[108] | 934 | #PBS -l walltime=$timestring |
---|
| 935 | #PBS -l ncpus=1 |
---|
| 936 | #PBS -l pmem=${memory}mb |
---|
| 937 | #PBS -m abe |
---|
[492] | 938 | $email_directive |
---|
[108] | 939 | #PBS -o $remote_dayfile |
---|
| 940 | |
---|
[892] | 941 | $init_cmds |
---|
[493] | 942 | $module_calls |
---|
[343] | 943 | |
---|
[108] | 944 | %%END%% |
---|
| 945 | |
---|
| 946 | fi |
---|
| 947 | |
---|
[440] | 948 | elif [[ $remote_host = lckyoto ]] |
---|
[437] | 949 | then |
---|
| 950 | |
---|
[440] | 951 | cat > $job_to_send << %%END%% |
---|
[799] | 952 | #!/bin/ksh |
---|
[440] | 953 | # @\$-o $remote_dayfile |
---|
| 954 | # @\$-eo -oi |
---|
| 955 | # @\$-lP 16 |
---|
[799] | 956 | # @\$-lp 1 |
---|
[440] | 957 | # @\$-lm 28gb -llm unlimited -ls unlimited |
---|
| 958 | # @\$-q $queue |
---|
| 959 | # @\$-Pvn abs_pack |
---|
| 960 | ##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack |
---|
| 961 | #. /thin/local/etc/setprofile/intel-11.0.sh |
---|
| 962 | #. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh |
---|
| 963 | . ~/.myprofile |
---|
| 964 | #. /home2/t/t51254/palm/current_version/myprofile |
---|
| 965 | #. /thin/apps/pgi/mpi.sh |
---|
| 966 | # |
---|
| 967 | env |
---|
| 968 | # |
---|
| 969 | set -x |
---|
| 970 | |
---|
| 971 | %%END%% |
---|
| 972 | |
---|
| 973 | elif [[ $remote_host = lcxt5m ]] |
---|
| 974 | then |
---|
| 975 | |
---|
[437] | 976 | if [[ $numprocs != 0 ]] |
---|
| 977 | then |
---|
| 978 | cat > $job_to_send << %%END%% |
---|
[799] | 979 | #!/bin/ksh |
---|
[437] | 980 | #PBS -S /bin/ksh |
---|
| 981 | #PBS -N $job_name |
---|
| 982 | #PBS -j oe |
---|
| 983 | #PBS -l walltime=$timestring |
---|
| 984 | #PBS -l mppwidth=${numprocs} |
---|
[622] | 985 | #PBS -l mppnppn=${processes_per_node} |
---|
[437] | 986 | #PBS -m abe |
---|
| 987 | #PBS -o $remote_dayfile |
---|
| 988 | |
---|
[892] | 989 | $init_cmds |
---|
[493] | 990 | $module_calls |
---|
[437] | 991 | |
---|
| 992 | %%END%% |
---|
| 993 | |
---|
| 994 | else |
---|
| 995 | cat > $job_to_send << %%END%% |
---|
| 996 | #!/bin/ksh |
---|
| 997 | #PBS -S /bin/ksh |
---|
| 998 | #PBS -N $job_name |
---|
| 999 | #PBS -j oe |
---|
| 1000 | #PBS -l walltime=$timestring |
---|
| 1001 | #PBS -l ncpus=1 |
---|
| 1002 | #PBS -l pmem=${memory}mb |
---|
| 1003 | #PBS -m abe |
---|
| 1004 | #PBS -o $remote_dayfile |
---|
| 1005 | |
---|
[892] | 1006 | $init_cmds |
---|
[493] | 1007 | $module_calls |
---|
[437] | 1008 | |
---|
| 1009 | %%END%% |
---|
| 1010 | |
---|
| 1011 | fi |
---|
| 1012 | |
---|
[1090] | 1013 | elif [[ $remote_host = lckyut ]] |
---|
| 1014 | then |
---|
| 1015 | cat > $job_to_send << %%END%% |
---|
| 1016 | #!/bin/bash |
---|
| 1017 | #PJM -L "vnode=$numprocs" |
---|
| 1018 | #PJM -L "vnode-core=1" |
---|
| 1019 | #PJM -L "rscgrp=$queue" |
---|
| 1020 | #PJM --no-stging |
---|
| 1021 | #PJM -L "elapse=$timestring" |
---|
| 1022 | #PJM --mpi proc=$numprocs |
---|
| 1023 | #PJM -o $remote_dayfile |
---|
| 1024 | #PJM -j |
---|
| 1025 | |
---|
| 1026 | export LANG=en_US.UTF-8 |
---|
| 1027 | %%END%% |
---|
| 1028 | |
---|
[1] | 1029 | elif [[ $remote_host = nech ]] |
---|
| 1030 | then |
---|
| 1031 | |
---|
| 1032 | if (( nodes > 1 )) |
---|
| 1033 | then |
---|
| 1034 | cat > $job_to_send << %%END%% |
---|
| 1035 | #!/bin/ksh |
---|
[622] | 1036 | #PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime |
---|
[1] | 1037 | #PBS -l ${qsubmem}=${Memory}gb |
---|
| 1038 | #PBS -b $nodes |
---|
| 1039 | #PBS -o $remote_dayfile |
---|
| 1040 | #PBS -N palm |
---|
| 1041 | #PBS -j o |
---|
| 1042 | #PBS -T mpisx |
---|
| 1043 | |
---|
| 1044 | %%END%% |
---|
| 1045 | |
---|
| 1046 | elif [[ $numprocs != 0 ]] |
---|
| 1047 | then |
---|
| 1048 | cat > $job_to_send << %%END%% |
---|
| 1049 | #!/bin/ksh |
---|
[622] | 1050 | #PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime |
---|
[1] | 1051 | #PBS -l ${qsubmem}=${Memory}gb |
---|
| 1052 | #PBS -o $remote_dayfile |
---|
| 1053 | #PBS -N palm |
---|
| 1054 | #PBS -j o |
---|
| 1055 | |
---|
| 1056 | %%END%% |
---|
| 1057 | |
---|
| 1058 | else |
---|
| 1059 | cat > $job_to_send << %%END%% |
---|
| 1060 | #!/bin/ksh |
---|
| 1061 | #PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime |
---|
| 1062 | #PBS -o $remote_dayfile |
---|
| 1063 | #PBS -j o |
---|
| 1064 | |
---|
| 1065 | %%END%% |
---|
| 1066 | |
---|
| 1067 | fi |
---|
| 1068 | |
---|
[251] | 1069 | elif [[ $remote_host = necriam ]] |
---|
[35] | 1070 | then |
---|
| 1071 | |
---|
| 1072 | if (( nodes > 1 )) |
---|
| 1073 | then |
---|
| 1074 | cat > $job_to_send << %%END%% |
---|
| 1075 | #!/bin/ksh |
---|
| 1076 | #PBS -b $nodes |
---|
| 1077 | #PBS -o $remote_dayfile |
---|
[253] | 1078 | #PBS -N $job_name |
---|
[35] | 1079 | #PBS -j o |
---|
[251] | 1080 | #PBS -v MPIPROGINV=YES |
---|
[35] | 1081 | |
---|
| 1082 | %%END%% |
---|
| 1083 | |
---|
| 1084 | elif [[ $numprocs != 0 ]] |
---|
| 1085 | then |
---|
| 1086 | cat > $job_to_send << %%END%% |
---|
| 1087 | #!/bin/ksh |
---|
| 1088 | #PBS -q ${queue} |
---|
| 1089 | #PBS -o $remote_dayfile |
---|
[253] | 1090 | #PBS -N $job_name |
---|
[35] | 1091 | #PBS -j o |
---|
[251] | 1092 | #PBS -v MPIPROGINV=YES |
---|
[35] | 1093 | |
---|
| 1094 | %%END%% |
---|
| 1095 | |
---|
| 1096 | else |
---|
| 1097 | cat > $job_to_send << %%END%% |
---|
| 1098 | #!/bin/ksh |
---|
| 1099 | #PBS -o $remote_dayfile |
---|
| 1100 | #PBS -j o |
---|
| 1101 | |
---|
| 1102 | %%END%% |
---|
| 1103 | |
---|
| 1104 | fi |
---|
| 1105 | |
---|
[1] | 1106 | elif [[ $remote_host = lctit ]] |
---|
| 1107 | then |
---|
| 1108 | cat > $job_to_send << %%END%% |
---|
[635] | 1109 | #!/bin/ksh |
---|
[892] | 1110 | $init_cmds |
---|
[678] | 1111 | $module_calls |
---|
| 1112 | |
---|
[1] | 1113 | %%END%% |
---|
| 1114 | |
---|
| 1115 | # OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN |
---|
[678] | 1116 | if [[ $tasks_per_node != $processes_per_node ]] |
---|
| 1117 | then |
---|
| 1118 | submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -q $queue " |
---|
| 1119 | else |
---|
| 1120 | submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -q $queue " |
---|
| 1121 | fi |
---|
[1] | 1122 | |
---|
| 1123 | else |
---|
| 1124 | |
---|
| 1125 | cat > $job_to_send << %%END%% |
---|
| 1126 | # @\$-q ${queue} |
---|
| 1127 | # @\$-l${qsubtime} $timestring |
---|
| 1128 | # @\$-l${qsubmem} ${memory}mb |
---|
| 1129 | # @\$-o $remote_dayfile |
---|
| 1130 | # @\$-eo |
---|
| 1131 | |
---|
| 1132 | %%END%% |
---|
| 1133 | |
---|
| 1134 | fi |
---|
| 1135 | |
---|
| 1136 | |
---|
| 1137 | # BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP |
---|
| 1138 | # BEI EXIT VERANLASSEN |
---|
| 1139 | # VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT |
---|
| 1140 | # AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH |
---|
| 1141 | if [[ $delete_dayfile = false && $remote_host != $local_host ]] |
---|
| 1142 | then |
---|
| 1143 | echo "set +vx" >> $job_to_send |
---|
| 1144 | echo "trap '" >> $job_to_send |
---|
| 1145 | echo "set +vx" >> $job_to_send |
---|
[1090] | 1146 | if [[ $(echo $remote_host | cut -c1-3) = ibm || $(echo $remote_host | cut -c1-5) = lcsgi || $(echo $remote_host | cut -c1-3) = nec || $remote_host = lckiaps || $remote_host = lckyut ]] |
---|
[1] | 1147 | then |
---|
[622] | 1148 | if [[ $remote_host = ibmh ]] |
---|
[1] | 1149 | then |
---|
| 1150 | return_queue=c1 |
---|
[693] | 1151 | elif [[ $remote_host = ibmkisti ]] |
---|
| 1152 | then |
---|
| 1153 | return_queue=class.1-2 |
---|
[622] | 1154 | elif [[ $remote_host = ibmku ]] |
---|
| 1155 | then |
---|
| 1156 | return_queue=sdbg2 |
---|
[1] | 1157 | elif [[ $remote_host = ibms ]] |
---|
| 1158 | then |
---|
| 1159 | return_queue=p_normal |
---|
| 1160 | elif [[ $remote_host = ibmy ]] |
---|
| 1161 | then |
---|
| 1162 | return_queue=serial |
---|
[325] | 1163 | elif [[ $remote_host = lcsgih || $remote_host = lcsgib ]] |
---|
| 1164 | then |
---|
[326] | 1165 | return_queue=serialq |
---|
[251] | 1166 | elif [[ $remote_host = necriam ]] |
---|
[1] | 1167 | then |
---|
[253] | 1168 | return_queue=SP |
---|
[1040] | 1169 | elif [[ $remote_host = lckiaps ]] |
---|
| 1170 | then |
---|
| 1171 | return_queue=express |
---|
[1090] | 1172 | elif [[ $remote_host = lckyut ]] |
---|
| 1173 | then |
---|
| 1174 | return_queue=cx-single |
---|
[1] | 1175 | else |
---|
| 1176 | return_queue=unknown |
---|
| 1177 | fi |
---|
| 1178 | |
---|
| 1179 | if [[ $(echo $remote_host | cut -c1-3) = ibm ]] |
---|
| 1180 | then |
---|
| 1181 | |
---|
[622] | 1182 | if [[ $remote_host = ibmku ]] |
---|
| 1183 | then |
---|
| 1184 | echo "echo \"#!/usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1185 | echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1186 | else |
---|
| 1187 | echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1188 | fi |
---|
[1] | 1189 | echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1190 | echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1191 | echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1192 | echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send |
---|
| 1193 | echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1194 | echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send |
---|
[312] | 1195 | if [[ $host != "ibmh" ]] |
---|
| 1196 | then |
---|
| 1197 | echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1198 | fi |
---|
[1] | 1199 | echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1200 | echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1201 | |
---|
| 1202 | echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1203 | echo "echo \" \" >> scpjob.$kennung" >> $job_to_send |
---|
| 1204 | |
---|
| 1205 | echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1206 | echo "echo \"batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send |
---|
[622] | 1207 | if [[ $remote_host = ibmku ]] |
---|
| 1208 | then |
---|
| 1209 | echo "echo \"rm scpjob.$kennung\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1210 | fi |
---|
[1] | 1211 | echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1212 | |
---|
| 1213 | elif [[ $remote_host = nech ]] |
---|
| 1214 | then |
---|
| 1215 | echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send |
---|
| 1216 | echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send |
---|
| 1217 | echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send |
---|
| 1218 | echo "#PBS -o last_job_transfer_protocol" >> $job_to_send |
---|
| 1219 | echo "#PBS -j o" >> $job_to_send |
---|
| 1220 | echo " " >> $job_to_send |
---|
| 1221 | echo "set -x" >> $job_to_send |
---|
| 1222 | echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send |
---|
| 1223 | echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send |
---|
| 1224 | echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send |
---|
| 1225 | echo "%%END%%" >> $job_to_send |
---|
| 1226 | |
---|
[251] | 1227 | elif [[ $remote_host = necriam ]] |
---|
[35] | 1228 | then |
---|
| 1229 | echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send |
---|
| 1230 | echo "#PBS -q $return_queue" >> $job_to_send |
---|
| 1231 | echo "#PBS -o last_job_transfer_protocol" >> $job_to_send |
---|
| 1232 | echo "#PBS -j o" >> $job_to_send |
---|
| 1233 | echo " " >> $job_to_send |
---|
| 1234 | echo "set -x" >> $job_to_send |
---|
| 1235 | echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send |
---|
| 1236 | echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send |
---|
| 1237 | echo "%%END%%" >> $job_to_send |
---|
| 1238 | |
---|
[1090] | 1239 | elif [[ $remote_host = lckyut ]] |
---|
| 1240 | then |
---|
| 1241 | echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send |
---|
| 1242 | echo "#!/bin/bash" >> $job_to_send |
---|
| 1243 | echo "#PJM -L \"vnode=1\"" >> $job_to_send |
---|
| 1244 | echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send |
---|
| 1245 | echo "#PJM --no-stging" >> $job_to_send |
---|
| 1246 | echo "#PJM -L \"elapse=30:00\"" >> $job_to_send |
---|
| 1247 | echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send |
---|
| 1248 | echo "#PJM -j" >> $job_to_send |
---|
| 1249 | echo " " >> $job_to_send |
---|
| 1250 | echo "export LANG=en_US.UTF-8" >> $job_to_send |
---|
| 1251 | echo "set -x" >> $job_to_send |
---|
| 1252 | echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send |
---|
| 1253 | echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send |
---|
| 1254 | echo "%%END%%" >> $job_to_send |
---|
| 1255 | |
---|
[181] | 1256 | elif [[ $(echo $remote_host | cut -c1-5) = lcsgi ]] |
---|
| 1257 | then |
---|
| 1258 | echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send |
---|
| 1259 | echo "#!/bin/bash" >> $job_to_send |
---|
| 1260 | echo "#PBS -N job_protocol_transfer" >> $job_to_send |
---|
[325] | 1261 | echo "#PBS -l walltime=00:30:00" >> $job_to_send |
---|
[181] | 1262 | echo "#PBS -l nodes=1:ppn=1" >> $job_to_send |
---|
[366] | 1263 | echo "#PBS -l feature=data" >> $job_to_send |
---|
[181] | 1264 | echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send |
---|
| 1265 | echo "#PBS -j oe" >> $job_to_send |
---|
| 1266 | echo " " >> $job_to_send |
---|
| 1267 | echo ". /usr/share/modules/init/bash" >> $job_to_send |
---|
| 1268 | echo "set -x" >> $job_to_send |
---|
| 1269 | echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send |
---|
| 1270 | echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send |
---|
| 1271 | echo "%%END%%" >> $job_to_send |
---|
| 1272 | |
---|
[1] | 1273 | else |
---|
| 1274 | |
---|
| 1275 | echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send |
---|
| 1276 | echo "# @\\\$-q $return_queue" >> $job_to_send |
---|
| 1277 | echo "# @\\\$-l${qsubtime} 10" >> $job_to_send |
---|
| 1278 | echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send |
---|
| 1279 | if [[ $remote_host = t3ej2 || $remote_host = t3ej5 || $remote_host = t3es ]] |
---|
| 1280 | then |
---|
| 1281 | echo "# @\$-l mpp_p=0" >> $job_to_send |
---|
| 1282 | fi |
---|
| 1283 | echo '# @\$-lF 10mb' >> $job_to_send |
---|
| 1284 | # echo '# @\$-o /dev/null' >> $job_to_send |
---|
| 1285 | echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send |
---|
| 1286 | echo '# @\\\$-eo' >> $job_to_send |
---|
| 1287 | echo " " >> $job_to_send |
---|
| 1288 | if [[ $remote_host = t3ej2 || $remote_host = t3ej5 ]] |
---|
| 1289 | then |
---|
| 1290 | echo "set +vx" >> $job_to_send |
---|
| 1291 | echo ". .profile" >> $job_to_send |
---|
| 1292 | fi |
---|
| 1293 | echo "set -x" >> $job_to_send |
---|
| 1294 | echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send |
---|
| 1295 | echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send |
---|
| 1296 | echo "%%END%%" >> $job_to_send |
---|
| 1297 | fi |
---|
| 1298 | |
---|
| 1299 | if [[ $(echo $remote_host | cut -c1-3) = ibm ]] |
---|
| 1300 | then |
---|
| 1301 | echo "llsubmit scpjob.$kennung" >> $job_to_send |
---|
[181] | 1302 | elif [[ $(echo $remote_host | cut -c1-5) = lcsgi ]] |
---|
| 1303 | then |
---|
[748] | 1304 | echo "rm -rf \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send |
---|
| 1305 | echo "chmod u+x scpjob.$kennung" >> $job_to_send |
---|
| 1306 | echo "msub scpjob.$kennung" >> $job_to_send |
---|
[1] | 1307 | elif [[ $remote_host = t3eb || $remote_host = t3eh || $remote_host = t3ej2 || $remote_host = t3ej5 ]] |
---|
| 1308 | then |
---|
| 1309 | echo "qsub -J n scpjob.$kennung" >> $job_to_send |
---|
| 1310 | elif [[ $remote_host = t3es ]] |
---|
| 1311 | then |
---|
| 1312 | echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send |
---|
[1043] | 1313 | elif [[ $remote_host = lckiaps ]] |
---|
| 1314 | then |
---|
| 1315 | echo "mv scpjob.$kennung $job_catalog" >> $job_to_send |
---|
| 1316 | echo "ssh ${remote_username}@${remote_addres} \"$submcom ${job_catalog}/scpjob.$kennung\" " >> $job_to_send |
---|
| 1317 | echo "rm ${job_catalog}/scpjob.$kennung" >> $job_to_send |
---|
[1090] | 1318 | elif [[ $remote_host = lckyut ]] |
---|
| 1319 | then |
---|
| 1320 | echo "scp -P 22 scpjob.$kennung ${remote_username}@${remote_addres}:job_queue" >> $job_to_send |
---|
| 1321 | echo "ssh -p 22 ${remote_username}@${remote_addres} \"cd job_queue; $submcom scpjob.$kennung; rm scpjob.$kennung\" " >> $job_to_send |
---|
[1] | 1322 | else |
---|
[1040] | 1323 | echo "$submcom scpjob.$kennung" >> $job_to_send |
---|
[1] | 1324 | fi |
---|
[1043] | 1325 | if [[ $remote_host != ibmku && $remote_host != lckiaps ]] |
---|
[622] | 1326 | then |
---|
| 1327 | echo "rm scpjob.$kennung" >> $job_to_send |
---|
| 1328 | fi |
---|
[1] | 1329 | if [[ $remote_host = nech ]] |
---|
| 1330 | then |
---|
| 1331 | echo "cd -" >> $job_to_send |
---|
| 1332 | fi |
---|
| 1333 | else |
---|
| 1334 | # echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send |
---|
| 1335 | echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send |
---|
| 1336 | fi |
---|
| 1337 | echo "set -x" >> $job_to_send |
---|
| 1338 | echo " ' exit" >> $job_to_send |
---|
| 1339 | echo "set -x" >> $job_to_send |
---|
| 1340 | fi |
---|
| 1341 | |
---|
| 1342 | |
---|
| 1343 | |
---|
| 1344 | # EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN |
---|
| 1345 | cat $file_to_send >> $job_to_send |
---|
[69] | 1346 | |
---|
[1] | 1347 | if [[ $remote_host = ibm ]] |
---|
| 1348 | then |
---|
| 1349 | echo " " >> $job_to_send |
---|
| 1350 | echo "exit" >> $job_to_send |
---|
| 1351 | fi |
---|
[635] | 1352 | |
---|
| 1353 | # remove job file |
---|
[622] | 1354 | if [[ $remote_host = lctit || $remote_host = ibmku ]] |
---|
[69] | 1355 | then |
---|
| 1356 | echo " " >> $job_to_send |
---|
| 1357 | echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send |
---|
| 1358 | fi |
---|
[1] | 1359 | |
---|
| 1360 | |
---|
| 1361 | |
---|
| 1362 | # USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN |
---|
| 1363 | if [[ -z $remote_user ]] |
---|
| 1364 | then |
---|
| 1365 | if [[ $remote_host = t3eb || $remote_host = t3eh || $remote_host = t3ej2 || $remote_host = t3ej5 || $remote_host = t3es || $remote_host = vpp ]] |
---|
| 1366 | then |
---|
| 1367 | grep $remote_addres ~/.netrc | read dum dum dum remote_user dum dum |
---|
| 1368 | fi |
---|
| 1369 | fi |
---|
| 1370 | |
---|
| 1371 | |
---|
| 1372 | |
---|
| 1373 | # JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN |
---|
| 1374 | if [[ $no_submit = false ]] |
---|
| 1375 | then |
---|
| 1376 | if [[ $remote_host != $local_host ]] |
---|
| 1377 | then |
---|
| 1378 | [[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..." |
---|
[82] | 1379 | if [[ $remote_host = ibms || $remote_host = ibmy ]] # ssh on ibms cannot handle "~/" |
---|
[1] | 1380 | then |
---|
[82] | 1381 | job_catalog_save=$job_catalog |
---|
| 1382 | job_catalog=job_queue |
---|
| 1383 | elif [[ $remote_host = nech ]] |
---|
| 1384 | then |
---|
| 1385 | job_catalog_save=$job_catalog |
---|
| 1386 | job_catalog=/hpf/b/${remote_user}/job_queue |
---|
| 1387 | fi |
---|
| 1388 | if [[ $local_host = decalpha ]] |
---|
| 1389 | then |
---|
| 1390 | # VERWENDUNG VON SCP AUF DECALPHA FRAGT FEHLERHAFTERWEISE |
---|
| 1391 | # PASSWORT AB |
---|
| 1392 | /bin/scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost |
---|
| 1393 | elif [[ $remote_host = nech ]] |
---|
| 1394 | then |
---|
| 1395 | # DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ |
---|
| 1396 | # TRANSFERIERT WERDEN |
---|
| 1397 | scp $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost |
---|
[1] | 1398 | else |
---|
[82] | 1399 | scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost |
---|
[1] | 1400 | fi |
---|
[82] | 1401 | if [[ $? = 1 ]] |
---|
| 1402 | then |
---|
| 1403 | locat=scp; exit |
---|
| 1404 | fi |
---|
| 1405 | if [[ $remote_host = ibms ]] |
---|
| 1406 | then |
---|
| 1407 | job_catalog=$job_catalog_save |
---|
| 1408 | fi |
---|
[1] | 1409 | [[ $verify = true ]] && printf "\n >>> finished\n" |
---|
| 1410 | else |
---|
| 1411 | eval job_catalog=$job_catalog |
---|
| 1412 | cp $job_to_send ${job_catalog}/$job_on_remhost |
---|
| 1413 | fi |
---|
| 1414 | |
---|
| 1415 | |
---|
| 1416 | |
---|
| 1417 | # NQS- BZW. LOADLEVELER-JOB STARTEN |
---|
| 1418 | if [[ $remote_host != $local_host ]] |
---|
| 1419 | then |
---|
| 1420 | [[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n" |
---|
[635] | 1421 | |
---|
| 1422 | if [[ $(echo $remote_host | cut -c1-5) = lcsgi && $prio = true ]] |
---|
[1] | 1423 | then |
---|
[635] | 1424 | printf "\n >>> submit with HLRN qos-feature hiprio...\n" |
---|
| 1425 | ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost" |
---|
| 1426 | elif [[ $remote_host = ibmku ]] |
---|
| 1427 | then |
---|
| 1428 | ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost" |
---|
[1] | 1429 | else |
---|
[635] | 1430 | ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost" |
---|
[82] | 1431 | fi |
---|
[1] | 1432 | |
---|
| 1433 | [[ $verify = true ]] && printf " >>> o.k.\n" |
---|
| 1434 | else |
---|
| 1435 | cd $job_catalog |
---|
[210] | 1436 | if [[ $(echo $local_host | cut -c1-5) = lcsgi || $(echo $local_host | cut -c1-3) = ibm ]] |
---|
[1] | 1437 | then |
---|
| 1438 | eval $submcom $job_on_remhost |
---|
[1090] | 1439 | elif [[ $local_host = lcfimm || $local_host = lctit || $localhost = lcxe6 || $localhost = lck || $localhost = lckordi || $localhost = lcyon || $localhost = lcsb || $localhost = lckyut ]] |
---|
[108] | 1440 | then |
---|
[635] | 1441 | chmod u+x $job_on_remhost |
---|
| 1442 | echo "$submcom $job_on_remhost" |
---|
[108] | 1443 | eval $submcom $job_on_remhost |
---|
[1] | 1444 | elif [[ $local_host = nech ]] |
---|
| 1445 | then |
---|
| 1446 | if [[ $queue = default ]] |
---|
| 1447 | then |
---|
[799] | 1448 | eval $submcom $job_on_remhost |
---|
[1] | 1449 | else |
---|
[799] | 1450 | eval $submcom -q $queue $job_on_remhost |
---|
[1] | 1451 | fi |
---|
| 1452 | else |
---|
| 1453 | qsub $job_on_remhost |
---|
| 1454 | fi |
---|
[622] | 1455 | |
---|
| 1456 | # Jobfile must not be deleted on lctit/ibmku!! This will be done |
---|
| 1457 | # only at the end of the job. |
---|
| 1458 | if [[ $local_host != lctit && $local_host != ibmku ]] |
---|
| 1459 | then |
---|
| 1460 | rm $job_on_remhost |
---|
| 1461 | fi |
---|
[1] | 1462 | cd - > /dev/null |
---|
| 1463 | fi |
---|
| 1464 | fi |
---|
| 1465 | |
---|
| 1466 | |
---|
| 1467 | |
---|
| 1468 | # ABSCHLUSSARBEITEN |
---|
| 1469 | |
---|
| 1470 | if [[ $no_submit = false ]] |
---|
| 1471 | then |
---|
| 1472 | rm $job_to_send |
---|
| 1473 | fi |
---|
| 1474 | [[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n" |
---|