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source: palm/trunk/SCRIPTS/subjob @ 1091

Last change on this file since 1091 was 1091, checked in by raasch, 11 years ago
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1	#!/bin/ksh
2
3	# subjob - script for automatic generation and submission of batch-job files
4	# for various batch queuing systems
5
6	#--------------------------------------------------------------------------------#
7	# This file is part of PALM.
8	#
9	# PALM is free software: you can redistribute it and/or modify it under the terms
10	# of the GNU General Public License as published by the Free Software Foundation,
11	# either version 3 of the License, or (at your option) any later version.
12	#
13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
16	#
17	# You should have received a copy of the GNU General Public License along with
18	# PALM. If not, see <http://www.gnu.org/licenses/>.
19	#
20	# Copyright 1997-2012 Leibniz University Hannover
21	#--------------------------------------------------------------------------------#
22	#
23	# Current revisions:
24	# ------------------
25	#
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: subjob 1091 2013-02-02 07:09:11Z raasch $
30	#
31	# 2013-02-02 07:06:13Z raasch
32	# adjustments for Kyushu-University computing center (lckyut)
33	# old changelog messages removed
34	#
35	# 1046 2012-11-09 14:38:45Z maronga
36	# code put under GPL (PALM 3.9)
37	#
38	# 08/07/94 - Siggi - first version finished
39	# 29/06/94 - Siggi - script development started
40	#--------------------------------------------------------------------------------#
41	# subjob - script for automatic generation and submission of batch-job files
42	# for various batch queuing systems
43	#--------------------------------------------------------------------------------#
44
45
46	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
47	delete_dayfile=false
48	email_notification=none
49	group_number=none
50	locat=normal
51	no_default_queue=none
52	no_submit=false
53	job_catalog="~/job_queue"
54	job_name=none
55	local_user=$LOGNAME
56	node_usage=shared
57	numprocs=0
58	punkte="..........................................................."
59	submcom=qsub
60	queue=default
61	remote_host=none
62	remote_user=""
63	verify=true
64
65	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
66	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
67	typeset -L20 spalte1
68	typeset -R40 spalte2
69	typeset -L60 spalte3
70
71
72
73	# FEHLERBEHANDLUNG
74	# BEI EXIT:
75	trap 'if [[ $locat != normal ]]
76	then
77	case $locat in
78	(option) printf "\n --> available optios can be displayed"
79	printf " by typing:"
80	printf "\n \"subjob ?\" \n";;
81	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
82	(*) printf "\n +++ unknown error"
83	printf "\n please inform S. Raasch!\n"
84	esac
85	[[ -f $job_to_send ]] && rm $job_to_send
86	printf "\n\n+++ SUBJOB killed \n\n"
87	fi' exit
88
89
90	# BEI TERMINAL-BREAK:
91	trap '[[ -f $job_to_send ]] && rm $job_to_send
92	printf "\n\n+++ SUBJOB killed \n\n"
93	exit
94	' 2
95
96
97
98
99	# LOKALEN HOSTNAMEN FESTSTELLEN
100	local_host=$(hostname)
101
102
103
104	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
105	# UEBERHAUPT ZULAESSIG IST
106	# Note: One of the entries for "lck" or "lckordi" always has to be
107	# comment out, because the hostname (node*) is same for both machines
108	case $local_host in
109	(atmos) local_addres=172.20.25.35; local_host=lcide;;
110	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
111	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
112	(bd1) local_addres=130.73.232.64; local_host=lcsgib;;
113	(bd2) local_addres=130.73.232.65; local_host=lcsgib;;
114	(bd3) local_addres=130.73.232.66; local_host=lcsgib;;
115	(bd4) local_addres=130.73.232.67; local_host=lcsgib;;
116	(b01*\|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;;
117	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
118	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
119	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
120	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
121	(climate*) local_addres=165.132.26.68; local_host=lcyon;;
122	(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
123	(cs*) local_addres=136.172.44.131; local_host=nech;;
124	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
125	(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
126	(node*) local_addres=165.132.26.61 local_host=lck;;
127	# (node*) local_addres=210.219.61.8 local_host=lckordi;;
128	(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
129	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
130	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
131	(gfdl3.yonsei.ac.kr) local_addres=165.132.26.56; local_host=decalpha;;
132	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
133	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
134	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxe6;;
135	(hd1) local_addres=130.75.4.104; local_host=lcsgih;;
136	(hd2) local_addres=130.75.4.105; local_host=lcsgih;;
137	(hd3) local_addres=130.75.4.106; local_host=lcsgih;;
138	(hd4) local_addres=130.75.4.107; local_host=lcsgih;;
139	(hicegate0) local_addres=130.75.4.101; local_host=lcsgih;;
140	(h01*\|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;;
141	(hicegate2) local_addres=130.75.4.103; local_host=lcsgih;;
142	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
143	(inferno) local_addres=130.75.105.5; local_host=lcmuk;;
144	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
145	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
146	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
147	(login*) local_addres=118.128.66.223; local_host=lckiaps;;
148	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
149	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
150	(hexagon*) local_addres=129.177.20.113; local_host=lcxe6;;
151	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
152	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
153	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
154	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
155	(pingui) local_addres=134.106.74.118; local_host=lcfor;;
156	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
157	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
158	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
159	(solano) local_addres=130.75.105.110; local_host=lcmuk;;
160	(sugoka*) local_addres=172.31.120.1; local_host=lckyut;;
161	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
162	(sx-*) local_addres=172.16.1.131; local_host=necriam;;
163	(r1*) local_addres=130.75.4.102; local_host=lcsgih;;
164	(r2*) local_addres=130.73.232.102; local_host=lcsgib;;
165	(t2a*) local_addres=10.1.6.165; local_host=lctit;;
166	(urban*) local_addres=147.46.30.151 local_host=lcsb;;
167	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
168	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
169	(*) printf "\n +++ \"$local_host\" unknown";
170	printf "\n please inform S. Raasch!";
171	locat=parameter; exit;;
172	esac
173
174
175
176	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
177	remote_host=$local_host
178
179
180
181
182	# PROZEDUROPTIONEN EINLESEN
183	while getopts :c:dDe:g:h:m:n:N:O:q:t:T:u:vX: option
184	do
185	case $option in
186	(c) job_catalog=$OPTARG;;
187	(d) delete_dayfile=true;;
188	(D) no_submit=true;;
189	(e) email_notification=$OPTARG;;
190	(g) group_number=$OPTARG;;
191	(h) remote_host=$OPTARG;;
192	(m) memory=$OPTARG;;
193	(n) job_name=$OPTARG;;
194	(N) node_usage=$OPTARG;;
195	(O) threads_per_task=$OPTARG;;
196	(q) no_default_queue=$OPTARG;;
197	(t) cputime=$OPTARG;;
198	(T) tasks_per_node=$OPTARG;;
199	(u) remote_user=$OPTARG;;
200	(v) verify=false;;
201	(X) numprocs=$OPTARG;;
202	(\?) printf "\n +++ Option $OPTARG unknown \n";
203	locat=option; exit;;
204	esac
205	done
206
207
208	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
209	shift OPTIND-1; file_to_send=$1
210
211
212	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
213	if [ "$1" = "?" ]
214	then
215	(printf "\n *** subjob can be called as follows:\n"
216	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
217	printf "\n Description of available options:\n"
218	printf "\n Option Description Default-Value"
219	printf "\n -c job-input- and output-catalog ~/job_queue"
220	printf "\n -d no job-protocol will be created ---"
221	printf "\n -D only the job-file will be created ---"
222	printf "\n -h execution host, available hosts: $remote_host"
223	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, ibmy, lc...,"
224	printf "\n lckiaps, lctit, nech, necriam, unics"
225	printf "\n -m memory demand per process in MByte ---"
226	printf "\n -n jobname <jobdatei>"
227	printf "\n -O threads per task (for OpenMP usage) 1"
228	printf "\n -q job-queue to be used default"
229	printf "\n -t allowed cpu-time in seconds ---"
230	printf "\n -T tasks per node (on parallel hosts) ---"
231	printf "\n -u username on execution host from .netrc"
232	printf "\n -v no prompt for confirmation ---"
233	printf "\n -X # of processors (on parallel hosts) 1"
234	printf "\n "
235	printf "\n The only possible positional parameter is <jobfile>:"
236	printf "\n The complete NQS-job must be provided here."
237	printf "\n <jobfile>=? creates this outline\n\n") \| more
238	exit
239	fi
240
241
242
243	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
244	if [[ "$file_to_send" = "" ]]
245	then
246	printf "\n +++ job-file missing"
247	locat=parameter; exit
248	else
249	if [[ -f $file_to_send ]]
250	then
251	true
252	else
253	printf "\n +++ job-file: "
254	printf "\n $file_to_send"
255	printf "\n does not exist"
256	locat=parameter; exit
257	fi
258	fi
259
260
261
262	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
263	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
264	if [[ $job_name = none ]]
265	then
266	job_name=$file_to_send
267	fi
268	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
269	then
270	printf "\n +++ job-file name: "
271	printf "\n $job_name"
272	printf "\n must not contain \"/\"-characters"
273	locat=parameter; exit
274	fi
275
276
277
278
279	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
280	# ODER WENN HOST NICHT ANGEGEBEN WURDE
281	if [[ $remote_host = none ]]
282	then
283	printf "\n +++ host missing"
284	locat=option; exit
285	else
286	case $remote_host in
287	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
288	(ibmh) queue=no_class; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
289	(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
290	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
291	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
292	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
293	(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
294	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
295	(lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;;
296	(lcsgih) queue=smallq; remote_addres=130.75.4.101; submcom=/opt/moab/bin/msub;;
297	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
298	(lckiaps) remote_addres=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
299	(lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;;
300	(lckyut) remote_addres=133.5.4.37; submcom=/usr/bin/pjsub;;
301	(lcsb) remote_addres=147.46.30.151; submcom=/usr/torque/bin/qsub;;
302	(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
303	(lcxe6) remote_addres=129.177.20.113; submcom=/opt/torque/2.5.10/bin/qsub;;
304	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
305	(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
306	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
307	(necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";;
308	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
309	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
310	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
311	locat=parameter; exit;;
312	esac
313	fi
314
315
316	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
317	if [[ $no_default_queue != none ]]
318	then
319	error=false
320	ndq=$no_default_queue
321	case $remote_host in
322	(ibm) case $ndq in
323	(p690_express\|p690_standard\|p690_long) error=false;;
324	(*) error=true;;
325	esac;;
326	(ibmh) case $ndq in
327	(no_class) error=false;;
328	(*) error=true;;
329	esac;;
330	(ibmkisti) case $ndq in
331	(class.32plus\|class.1-2\|class.2-32) error=false;;
332	(*) error=true;;
333	esac;;
334	(ibmku) case $ndq in
335	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
336	(*) error=true;;
337	esac;;
338	(ibms) case $ndq in
339	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
340	(*) error=true;;
341	esac;;
342	(ibmy) case $ndq in
343	(parallel) error=false;;
344	(*) error=true;;
345	esac;;
346	(lckiaps) case $ndq in
347	(express\|normal) error=false;;
348	(*) error=true;;
349	esac;;
350	(lckyoto) case $ndq in
351	(eh\|ph) error=false;;
352	(*) error=true;;
353	esac;;
354	(lckyut) case $ndq in
355	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
356	(*) error=true;;
357	esac;;
358	(lcsgib\|lcsgih) case $ndq in
359	(testq\|serialq\|smallq\|mediumq\|bigq\|workq\|dataq\|permq\|special1q) error=false;;
360	(*) error=true;;
361	esac;;
362	(lctit) case $ndq in
363	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
364	(*) error=true;;
365	esac;;
366	(t3eb) case $ndq in
367	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
368	(*) error=true;;
369	esac;;
370	(necriam) case $ndq in
371	(SP\|SS\|P6) error=false;;
372	(*) error=true;;
373	esac;;
374	(t3eh) case $ndq in
375	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
376	(*) error=true;;
377	esac;;
378	(t3ej2\|t3ej5) case $ndq in
379	(low\|normal\|high) error=false;;
380	(*) error=true;;
381	esac;;
382	(t3es) case $ndq in
383	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
384	(*) error=true;;
385	esac;;
386	(unics) case $ndq in
387	(unics\|ht) error=false;;
388	(*) error=true;;
389	esac;;
390	esac
391	if [[ $error = true ]]
392	then
393	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
394	locat=parameter; exit
395	else
396	queue=$no_default_queue
397	fi
398	fi
399
400
401
402	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
403	# AUFTEILEN
404	done=false
405	while [[ $done = false ]]
406	do
407	if (( $cputime <= 0 ))
408	then
409	printf "\n +++ wrong cpu-time or cpu-time missing"
410	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
411	printf "\n >>> "
412	read cputime 1>/dev/null 2>&1
413	else
414	done=true
415	fi
416	done
417	if [[ $remote_host = nech ]]
418	then
419	if (( tasks_per_node != 0 ))
420	then
421	(( cputime = cputime * tasks_per_node ))
422	elif [[ $numprocs != 0 ]]
423	then
424	(( cputime = cputime * numprocs ))
425	fi
426	fi
427	(( stunden = cputime / 3600 ))
428	(( resttime = cputime - stunden * 3600 ))
429	(( minuten = resttime / 60 ))
430	(( sekunden = resttime - minuten * 60 ))
431	timestring=${stunden}:${minuten}:${sekunden}
432
433
434
435	# PRUEFEN DER KERNSPEICHERANFORDERUNG
436	done=false
437	while [[ $done = false ]]
438	do
439	if (( memory <= 0 ))
440	then
441	printf "\n +++ wrong memory demand or memory demand missing"
442	printf "\n >>> Please type memory in MByte per process as INTEGER:"
443	printf "\n >>> "
444	read memory 1>/dev/null 2>&1
445	else
446	done=true
447	fi
448	done
449
450	if [[ $remote_host = nech \|\| $remote_host = necriam ]]
451	then
452	if (( tasks_per_node != 0 ))
453	then
454	(( Memory = memory * tasks_per_node / 1000 ))
455	elif [[ $numprocs != 0 ]]
456	then
457	(( Memory = memory * numprocs / 1000 ))
458	else
459	(( Memory = memory / 1000 ))
460	fi
461	elif [[ $remote_host = lctit ]]
462	then
463	(( Memory = memory * tasks_per_node / 1000 ))
464	fi
465
466
467	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
468	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
469	then
470	(( memory = memory * threads_per_task ))
471	fi
472
473
474	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
475	if (( tasks_per_node != 0 ))
476	then
477	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
478	fi
479
480	# Calculate number of processes per node
481	(( processes_per_node = tasks_per_node * threads_per_task ))
482
483	# Calculate number of MPI tasks
484	(( mpi_tasks = numprocs / threads_per_task ))
485
486
487	# HEADER-AUSGABE
488	if [[ $verify = true ]]
489	then
490	printf "\n\n"
491	printf "#--------------------------------------------------------------# \n"
492	spalte1=SUBJOB;spalte2=$(date)
493	printf "\| $spalte1$spalte2 \| \n"
494	printf "\| \| \n"
495	printf "\| values of parameters/options: \| \n"
496	spalte1=local_host$punkte; spalte2=$punkte$local_host
497	printf "\| $spalte1$spalte2 \| \n"
498	spalte1=remote_host$punkte; spalte2=$punkte$remote_host
499	printf "\| $spalte1$spalte2 \| \n"
500	spalte1=queue$punkte; spalte2=$punkte$queue
501	printf "\| $spalte1$spalte2 \| \n"
502	spalte1=memory$punkte; spalte2="$punkte$memory mb"
503	printf "\| $spalte1$spalte2 \| \n"
504	spalte1=cputime$punkte; spalte2="$punkte$cputime sec"
505	printf "\| $spalte1$spalte2 \| \n"
506	spalte1=job_name$punkte; spalte2="$punkte$job_name"
507	printf "\| $spalte1$spalte2 \| \n"
508	printf "#--------------------------------------------------------------# \n\n"
509
510
511	# KONTROLLABFRAGE, OB ALLES O.K.
512	antwort="dummy"
513	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
514	do
515	read antwort?" >>> continue (y/n) ? "
516	done
517	if [[ $antwort = n \|\| $antwort = N ]]
518	then
519	locat=verify; exit
520	fi
521	printf "\n"
522	fi
523
524
525
526	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
527	kennung=$RANDOM
528	job_on_remhost=${job_name}_${kennung}_$local_host
529	job_to_send=job_to_send_$kennung
530	if [[ $delete_dayfile = false ]]
531	then
532	remote_dayfile=${local_host}_${job_name}_result_$kennung
533	local_dayfile=${remote_host}_${job_name}
534	else
535	remote_dayfile=/dev/null
536	fi
537
538
539
540	# Generate the batch job scripts (qsub/msub/LoadLeveler)
541	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
542	then
543
544	# General LoadLeveler settings
545	execute_in_shell="#!/bin/ksh"
546	use_shell="# @ shell = /bin/ksh"
547	consumable_memory="ConsumableMemory($memory mb)"
548	class="# @ class = $queue"
549	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
550	network_to_use="# @ network.mpi = sn_all,shared,us"
551	data_limit="# @ data_limit = 1.76gb"
552	image_size="# @ image_size = 50"
553	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
554
555	if [[ $email_notification = none ]]
556	then
557	notify_user=""
558	else
559	notify_user="# @ notify_user = $email_notification"
560	if [[ $delete_dayfile = true ]]
561	then
562	notification='# @ notification = never'
563	fi
564	fi
565
566	if [[ $remote_host = ibmh ]]
567	then
568	data_limit=""
569	network_to_use=""
570	class=""
571	environment=""
572	rset="# @ rset = RSET_MCM_AFFINITY"
573	task_affinity="# @ task_affinity = core(1)"
574	elif [[ $remote_host = ibmkisti ]]
575	then
576	network_to_use="# @ network.MPI = sn_all,shared,US"
577	wall_clock_limit="# @ wall_clock_limit = $timestring"
578	if [[ $threads_per_task = 1 ]]
579	then
580	rset="# @ rset = RSET_MCM_AFFINITY"
581	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
582	fi
583	environment=""
584	use_shell=""
585	data_limit=""
586	image_size=""
587	elif [[ $remote_host = ibmku ]]
588	then
589	execute_in_shell="#!/usr/bin/ksh"
590	use_shell="# @ shell = /usr/bin/ksh"
591	consumable_memory=""
592	environment=""
593	network_to_use="# @ network.mpi = sn_all,shared,us"
594	data_limit=""
595	image_size=""
596	elif [[ $remote_host = ibms ]]
597	then
598	network_to_use="# @ network.mpi = csss,shared,us"
599	elif [[ $remote_host = ibmy ]]
600	then
601	consumable_memory=""
602	network_to_use=""
603	fi
604
605	cat > $job_to_send << %%END%%
606	$execute_in_shell
607	$use_shell
608
609	# @ job_type = parallel
610	# @ job_name = $job_name
611	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
612	# @ output = $remote_dayfile
613	# @ error = $remote_dayfile
614	$wall_clock_limit
615	$image_size
616	$class
617	$environment
618	$network_to_use
619	$data_limit
620	$rset
621	$mcm_affinity_options
622	$task_affinity
623	$notification
624	$notify_user
625
626	%%END%%
627
628	if (( nodes > 0 ))
629	then
630
631	if [[ $remote_host != ibmkisti ]]
632	then
633
634	cat >> $job_to_send << %%END%%
635	# @ node = $nodes
636	# @ tasks_per_node = $processes_per_node
637	# @ node_usage = $node_usage
638	# @ queue
639
640	%%END%%
641
642	else
643
644	cat >> $job_to_send << %%END%%
645	# @ total_tasks = $mpi_tasks
646	# @ blocking = unlimited
647	# @ queue
648
649	%%END%%
650
651	fi
652
653	else
654
655	if [[ $remote_host != ibmy ]]
656	then
657
658	cat >> $job_to_send << %%END%%
659	# @ blocking = unlimited
660	# @ total_tasks = $numprocs
661	# @ node_usage = $node_usage
662	# @ queue
663
664	%%END%%
665
666	else
667
668	cat >> $job_to_send << %%END%%
669	# @ node = 1
670	# @ total_tasks = $numprocs
671	# @ queue
672
673	%%END%%
674
675	fi
676
677	fi
678
679	# workaround because of silly job filter on ibmkisti
680	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
681	then
682	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
683	fi
684
685	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
686	then
687
688	cat > $job_to_send << %%END%%
689	#!/bin/ksh
690
691	# @ job_type = serial
692	# @ node_usage = $node_usage
693	# @ job_name = palm
694	# @ wall_clock_limit = ${timestring},$timestring
695	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
696	# @ output = $remote_dayfile
697	# @ error = $remote_dayfile
698	$class
699	$notification
700
701	# @ queue
702
703	%%END%%
704
705	elif [[ $remote_host = lcfimm ]]
706	then
707
708	if [[ $numprocs != 0 ]]
709	then
710	cat > $job_to_send << %%END%%
711	#!/bin/ksh
712	#PBS -N $job_name
713	#PBS -A $project_account
714	#PBS -l walltime=$timestring
715	#PBS -l nodes=${nodes}:ppn=$processes_per_node
716	#PBS -l pmem=${memory}mb
717	#PBS -m abe
718	#PBS -o $remote_dayfile
719	#PBS -j oe
720	mpd &
721
722	%%END%%
723
724	else
725	cat > $job_to_send << %%END%%
726	#!/bin/ksh
727	#PBS -N $job_name
728	#PBS -A $project_account
729	#PBS -l walltime=$timestring
730	#PBS -l ncpus=1
731	#PBS -l pmem=${memory}mb
732	#PBS -m abe
733	#PBS -o $remote_dayfile
734	#PBS -j oe
735
736	%%END%%
737
738	fi
739
740	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
741	then
742
743	if [[ $numprocs != 0 ]]
744	then
745	cat > $job_to_send << %%END%%
746	#!/bin/ksh
747	#PBS -N $job_name
748	#PBS -l walltime=$timestring
749	#PBS -l ncpus=$numprocs
750	#PBS -l pmem=${memory}mb
751	#PBS -o $remote_dayfile
752	#PBS -l nodes=$nodes:ppn=${processes_per_node}
753	#PBS -j oe
754
755	mpd &
756
757	%%END%%
758
759	else
760	cat > $job_to_send << %%END%%
761	#!/bin/ksh
762	#PBS -N $job_name
763	#PBS -l walltime=$timestring
764	#PBS -l ncpus=1
765	#PBS -l pmem=${memory}mb
766	#PBS -o $remote_dayfile
767	#PBS -j oe
768
769	%%END%%
770
771	fi
772
773	elif [[ $remote_host = lckiaps ]]
774	then
775
776	if [[ $numprocs != 0 ]]
777	then
778	cat > $job_to_send << %%END%%
779	#!/bin/ksh
780	#PBS -N $job_name
781	#PBS -l walltime=$timestring
782	#PBS -l select=1:ncpus=$numprocs
783	#PBS -l pmem=${memory}mb
784	#PBS -q $queue
785	#PBS -o $remote_dayfile
786	#PBS -j oe
787	#PBS -V
788
789	%%END%%
790
791	else
792	cat > $job_to_send << %%END%%
793	#!/bin/ksh
794	#PBS -N $job_name
795	#PBS -l walltime=$timestring
796	#PBS -l ncpus=1
797	#PBS -l pmem=${memory}mb
798	#PBS -o $remote_dayfile
799	#PBS -j oe
800
801	%%END%%
802
803	fi
804
805	elif [[ $remote_host = lcyon ]]
806	then
807
808	if [[ $numprocs != 0 ]]
809	then
810	cat > $job_to_send << %%END%%
811	#!/bin/ksh
812	#PBS -N $job_name
813	#PBS -l walltime=$timestring
814	#PBS -l ncpus=$numprocs
815	#PBS -l pmem=${memory}mb
816	#PBS -o $remote_dayfile
817	#PBS -j oe
818
819	%%END%%
820
821	else
822	cat > $job_to_send << %%END%%
823	#!/bin/ksh
824	#PBS -N $job_name
825	#PBS -l walltime=$timestring
826	#PBS -l ncpus=1
827	#PBS -l pmem=${memory}mb
828	#PBS -o $remote_dayfile
829	#PBS -j oe
830
831	%%END%%
832
833	fi
834
835	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
836	then
837
838	if [[ "$sgi_feature" != "" ]]
839	then
840	feature_directive="#PBS -l feature=$sgi_feature"
841	else
842	feature_directive=""
843	fi
844
845	if [[ $queue = dataq \|\| $queue = permq ]]
846	then
847	feature_directive="#PBS -l feature=data"
848	fi
849
850	if [[ $queue = testq \|\| $queue = mediumq \|\| $queue = bigq \|\| $queue = workq \|\| $queue = dataq \|\| $queue = permq \|\| $queue = serialq \|\| $queue = special1q ]]
851	then
852	queue_directive="#PBS -q $queue"
853	else
854	queue_directive=""
855	fi
856
857	if [[ $email_notification = none ]]
858	then
859	email_directive=""
860	else
861	email_directive="#PBS -M $email_notification"
862	fi
863
864	if [[ $numprocs != 0 ]]
865	then
866	cat > $job_to_send << %%END%%
867	#!/bin/bash
868	#PBS -N $job_name
869	#PBS -l walltime=$timestring
870	#PBS -l nodes=$nodes:ppn=${processes_per_node}
871	#PBS -l naccesspolicy=$node_usage
872	#PBS -o $remote_dayfile
873	#PBS -j oe
874	$feature_directive
875	$queue_directive
876	$email_directive
877
878	eval \`/sw/swdist/bin/modulesinit\`
879	#. /usr/share/modules/init/bash
880	$init_cmds
881	$module_calls
882
883	echo ld_library_path=\$LD_LIBRARY_PATH
884
885	%%END%%
886
887	else
888	cat > $job_to_send << %%END%%
889	#PBS -S /bin/bash
890	#PBS -N $job_name
891	#PBS -l walltime=$timestring
892	#PBS -l ncpus=1
893	#PBS -o $remote_dayfile
894	#PBS -j oe
895	$queue_directive
896	$email_directive
897
898	eval \`/sw/swdist/bin/modulesinit\`
899	#. /usr/share/modules/init/bash
900	$init_cmds
901	$module_calls
902
903	%%END%%
904
905	fi
906
907	elif [[ $remote_host = lcxe6 ]]
908	then
909
910	if [[ $numprocs != 0 ]]
911	then
912	cat > $job_to_send << %%END%%
913	#!/bin/ksh
914	#PBS -S /bin/ksh
915	#PBS -N $job_name
916	#PBS -A $project_account
917	#PBS -j oe
918	#PBS -l walltime=$timestring
919	#PBS -l mppwidth=${numprocs}
920	#PBS -l mppnppn=${processes_per_node}
921	#PBS -m abe
922	#PBS -o $remote_dayfile
923	$email_directive
924
925	$init_cmds
926	$module_calls
927
928	%%END%%
929
930	else
931	cat > $job_to_send << %%END%%
932	#!/bin/ksh
933	#PBS -S /bin/ksh
934	#PBS -N $job_name
935	#PBS -A $project_account
936	#PBS -j oe
937	#PBS -l walltime=$timestring
938	#PBS -l ncpus=1
939	#PBS -l pmem=${memory}mb
940	#PBS -m abe
941	$email_directive
942	#PBS -o $remote_dayfile
943
944	$init_cmds
945	$module_calls
946
947	%%END%%
948
949	fi
950
951	elif [[ $remote_host = lckyoto ]]
952	then
953
954	cat > $job_to_send << %%END%%
955	#!/bin/ksh
956	# @\$-o $remote_dayfile
957	# @\$-eo -oi
958	# @\$-lP 16
959	# @\$-lp 1
960	# @\$-lm 28gb -llm unlimited -ls unlimited
961	# @\$-q $queue
962	# @\$-Pvn abs_pack
963	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
964	#. /thin/local/etc/setprofile/intel-11.0.sh
965	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
966	. ~/.myprofile
967	#. /home2/t/t51254/palm/current_version/myprofile
968	#. /thin/apps/pgi/mpi.sh
969	#
970	env
971	#
972	set -x
973
974	%%END%%
975
976	elif [[ $remote_host = lcxt5m ]]
977	then
978
979	if [[ $numprocs != 0 ]]
980	then
981	cat > $job_to_send << %%END%%
982	#!/bin/ksh
983	#PBS -S /bin/ksh
984	#PBS -N $job_name
985	#PBS -j oe
986	#PBS -l walltime=$timestring
987	#PBS -l mppwidth=${numprocs}
988	#PBS -l mppnppn=${processes_per_node}
989	#PBS -m abe
990	#PBS -o $remote_dayfile
991
992	$init_cmds
993	$module_calls
994
995	%%END%%
996
997	else
998	cat > $job_to_send << %%END%%
999	#!/bin/ksh
1000	#PBS -S /bin/ksh
1001	#PBS -N $job_name
1002	#PBS -j oe
1003	#PBS -l walltime=$timestring
1004	#PBS -l ncpus=1
1005	#PBS -l pmem=${memory}mb
1006	#PBS -m abe
1007	#PBS -o $remote_dayfile
1008
1009	$init_cmds
1010	$module_calls
1011
1012	%%END%%
1013
1014	fi
1015
1016	elif [[ $remote_host = lckyut ]]
1017	then
1018	cat > $job_to_send << %%END%%
1019	#!/bin/bash
1020	#PJM -L "vnode=$numprocs"
1021	#PJM -L "vnode-core=1"
1022	#PJM -L "rscgrp=$queue"
1023	#PJM --no-stging
1024	#PJM -L "elapse=$timestring"
1025	#PJM --mpi proc=$numprocs
1026	#PJM -o $remote_dayfile
1027	#PJM -j
1028
1029	export LANG=en_US.UTF-8
1030	%%END%%
1031
1032	elif [[ $remote_host = nech ]]
1033	then
1034
1035	if (( nodes > 1 ))
1036	then
1037	cat > $job_to_send << %%END%%
1038	#!/bin/ksh
1039	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1040	#PBS -l ${qsubmem}=${Memory}gb
1041	#PBS -b $nodes
1042	#PBS -o $remote_dayfile
1043	#PBS -N palm
1044	#PBS -j o
1045	#PBS -T mpisx
1046
1047	%%END%%
1048
1049	elif [[ $numprocs != 0 ]]
1050	then
1051	cat > $job_to_send << %%END%%
1052	#!/bin/ksh
1053	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1054	#PBS -l ${qsubmem}=${Memory}gb
1055	#PBS -o $remote_dayfile
1056	#PBS -N palm
1057	#PBS -j o
1058
1059	%%END%%
1060
1061	else
1062	cat > $job_to_send << %%END%%
1063	#!/bin/ksh
1064	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1065	#PBS -o $remote_dayfile
1066	#PBS -j o
1067
1068	%%END%%
1069
1070	fi
1071
1072	elif [[ $remote_host = necriam ]]
1073	then
1074
1075	if (( nodes > 1 ))
1076	then
1077	cat > $job_to_send << %%END%%
1078	#!/bin/ksh
1079	#PBS -b $nodes
1080	#PBS -o $remote_dayfile
1081	#PBS -N $job_name
1082	#PBS -j o
1083	#PBS -v MPIPROGINV=YES
1084
1085	%%END%%
1086
1087	elif [[ $numprocs != 0 ]]
1088	then
1089	cat > $job_to_send << %%END%%
1090	#!/bin/ksh
1091	#PBS -q ${queue}
1092	#PBS -o $remote_dayfile
1093	#PBS -N $job_name
1094	#PBS -j o
1095	#PBS -v MPIPROGINV=YES
1096
1097	%%END%%
1098
1099	else
1100	cat > $job_to_send << %%END%%
1101	#!/bin/ksh
1102	#PBS -o $remote_dayfile
1103	#PBS -j o
1104
1105	%%END%%
1106
1107	fi
1108
1109	elif [[ $remote_host = lctit ]]
1110	then
1111	cat > $job_to_send << %%END%%
1112	#!/bin/ksh
1113	$init_cmds
1114	$module_calls
1115
1116	%%END%%
1117
1118	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
1119	if [[ $tasks_per_node != $processes_per_node ]]
1120	then
1121	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -q $queue "
1122	else
1123	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -q $queue "
1124	fi
1125
1126	else
1127
1128	cat > $job_to_send << %%END%%
1129	# @\$-q ${queue}
1130	# @\$-l${qsubtime} $timestring
1131	# @\$-l${qsubmem} ${memory}mb
1132	# @\$-o $remote_dayfile
1133	# @\$-eo
1134
1135	%%END%%
1136
1137	fi
1138
1139
1140	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
1141	# BEI EXIT VERANLASSEN
1142	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
1143	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
1144	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1145	then
1146	echo "set +vx" >> $job_to_send
1147	echo "trap '" >> $job_to_send
1148	echo "set +vx" >> $job_to_send
1149	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-5) = lcsgi \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lckiaps \|\| $remote_host = lckyut ]]
1150	then
1151	if [[ $remote_host = ibmh ]]
1152	then
1153	return_queue=c1
1154	elif [[ $remote_host = ibmkisti ]]
1155	then
1156	return_queue=class.1-2
1157	elif [[ $remote_host = ibmku ]]
1158	then
1159	return_queue=sdbg2
1160	elif [[ $remote_host = ibms ]]
1161	then
1162	return_queue=p_normal
1163	elif [[ $remote_host = ibmy ]]
1164	then
1165	return_queue=serial
1166	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
1167	then
1168	return_queue=serialq
1169	elif [[ $remote_host = necriam ]]
1170	then
1171	return_queue=SP
1172	elif [[ $remote_host = lckiaps ]]
1173	then
1174	return_queue=express
1175	elif [[ $remote_host = lckyut ]]
1176	then
1177	return_queue=cx-single
1178	else
1179	return_queue=unknown
1180	fi
1181
1182	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1183	then
1184
1185	if [[ $remote_host = ibmku ]]
1186	then
1187	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1188	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1189	else
1190	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1191	fi
1192	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
1193	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
1194	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
1195	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
1196	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1197	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1198	if [[ $host != "ibmh" ]]
1199	then
1200	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
1201	fi
1202	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
1203	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
1204
1205	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
1206	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
1207
1208	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
1209	echo "echo \"batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
1210	if [[ $remote_host = ibmku ]]
1211	then
1212	echo "echo \"rm scpjob.$kennung\" >> scpjob.$kennung" >> $job_to_send
1213	fi
1214	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
1215
1216	elif [[ $remote_host = nech ]]
1217	then
1218	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1219	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1220	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1221	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1222	echo "#PBS -j o" >> $job_to_send
1223	echo " " >> $job_to_send
1224	echo "set -x" >> $job_to_send
1225	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1226	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1227	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1228	echo "%%END%%" >> $job_to_send
1229
1230	elif [[ $remote_host = necriam ]]
1231	then
1232	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1233	echo "#PBS -q $return_queue" >> $job_to_send
1234	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1235	echo "#PBS -j o" >> $job_to_send
1236	echo " " >> $job_to_send
1237	echo "set -x" >> $job_to_send
1238	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1239	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1240	echo "%%END%%" >> $job_to_send
1241
1242	elif [[ $remote_host = lckyut ]]
1243	then
1244	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1245	echo "#!/bin/bash" >> $job_to_send
1246	echo "#PJM -L \"vnode=1\"" >> $job_to_send
1247	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1248	echo "#PJM --no-stging" >> $job_to_send
1249	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1250	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1251	echo "#PJM -j" >> $job_to_send
1252	echo " " >> $job_to_send
1253	echo "export LANG=en_US.UTF-8" >> $job_to_send
1254	echo "set -x" >> $job_to_send
1255	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1256	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1257	echo "%%END%%" >> $job_to_send
1258
1259	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1260	then
1261	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1262	echo "#!/bin/bash" >> $job_to_send
1263	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1264	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1265	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1266	echo "#PBS -l feature=data" >> $job_to_send
1267	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1268	echo "#PBS -j oe" >> $job_to_send
1269	echo " " >> $job_to_send
1270	echo ". /usr/share/modules/init/bash" >> $job_to_send
1271	echo "set -x" >> $job_to_send
1272	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1273	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1274	echo "%%END%%" >> $job_to_send
1275
1276	else
1277
1278	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1279	echo "# @\\\$-q $return_queue" >> $job_to_send
1280	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1281	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1282	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1283	then
1284	echo "# @\$-l mpp_p=0" >> $job_to_send
1285	fi
1286	echo '# @\$-lF 10mb' >> $job_to_send
1287	# echo '# @\$-o /dev/null' >> $job_to_send
1288	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1289	echo '# @\\\$-eo' >> $job_to_send
1290	echo " " >> $job_to_send
1291	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1292	then
1293	echo "set +vx" >> $job_to_send
1294	echo ". .profile" >> $job_to_send
1295	fi
1296	echo "set -x" >> $job_to_send
1297	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1298	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1299	echo "%%END%%" >> $job_to_send
1300	fi
1301
1302	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1303	then
1304	echo "llsubmit scpjob.$kennung" >> $job_to_send
1305	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1306	then
1307	echo "rm -rf \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1308	echo "chmod u+x scpjob.$kennung" >> $job_to_send
1309	echo "msub scpjob.$kennung" >> $job_to_send
1310	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1311	then
1312	echo "qsub -J n scpjob.$kennung" >> $job_to_send
1313	elif [[ $remote_host = t3es ]]
1314	then
1315	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
1316	elif [[ $remote_host = lckiaps ]]
1317	then
1318	echo "mv scpjob.$kennung $job_catalog" >> $job_to_send
1319	echo "ssh ${remote_username}@${remote_addres} \"$submcom ${job_catalog}/scpjob.$kennung\" " >> $job_to_send
1320	echo "rm ${job_catalog}/scpjob.$kennung" >> $job_to_send
1321	elif [[ $remote_host = lckyut ]]
1322	then
1323	echo "scp -P 22 scpjob.$kennung ${remote_username}@${remote_addres}:job_queue" >> $job_to_send
1324	echo "ssh -p 22 ${remote_username}@${remote_addres} \"cd job_queue; $submcom scpjob.$kennung; rm scpjob.$kennung\" " >> $job_to_send
1325	else
1326	echo "$submcom scpjob.$kennung" >> $job_to_send
1327	fi
1328	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
1329	then
1330	echo "rm scpjob.$kennung" >> $job_to_send
1331	fi
1332	if [[ $remote_host = nech ]]
1333	then
1334	echo "cd -" >> $job_to_send
1335	fi
1336	else
1337	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1338	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1339	fi
1340	echo "set -x" >> $job_to_send
1341	echo " ' exit" >> $job_to_send
1342	echo "set -x" >> $job_to_send
1343	fi
1344
1345
1346
1347	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
1348	cat $file_to_send >> $job_to_send
1349
1350	if [[ $remote_host = ibm ]]
1351	then
1352	echo " " >> $job_to_send
1353	echo "exit" >> $job_to_send
1354	fi
1355
1356	# remove job file
1357	if [[ $remote_host = lctit \|\| $remote_host = ibmku ]]
1358	then
1359	echo " " >> $job_to_send
1360	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1361	fi
1362
1363
1364
1365	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
1366	if [[ -z $remote_user ]]
1367	then
1368	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
1369	then
1370	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
1371	fi
1372	fi
1373
1374
1375
1376	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
1377	if [[ $no_submit = false ]]
1378	then
1379	if [[ $remote_host != $local_host ]]
1380	then
1381	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1382	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
1383	then
1384	job_catalog_save=$job_catalog
1385	job_catalog=job_queue
1386	elif [[ $remote_host = nech ]]
1387	then
1388	job_catalog_save=$job_catalog
1389	job_catalog=/hpf/b/${remote_user}/job_queue
1390	fi
1391	if [[ $local_host = decalpha ]]
1392	then
1393	# VERWENDUNG VON SCP AUF DECALPHA FRAGT FEHLERHAFTERWEISE
1394	# PASSWORT AB
1395	/bin/scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1396	elif [[ $remote_host = nech ]]
1397	then
1398	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
1399	# TRANSFERIERT WERDEN
1400	scp $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1401	else
1402	scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1403	fi
1404	if [[ $? = 1 ]]
1405	then
1406	locat=scp; exit
1407	fi
1408	if [[ $remote_host = ibms ]]
1409	then
1410	job_catalog=$job_catalog_save
1411	fi
1412	[[ $verify = true ]] && printf "\n >>> finished\n"
1413	else
1414	eval job_catalog=$job_catalog
1415	cp $job_to_send ${job_catalog}/$job_on_remhost
1416	fi
1417
1418
1419
1420	# NQS- BZW. LOADLEVELER-JOB STARTEN
1421	if [[ $remote_host != $local_host ]]
1422	then
1423	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1424
1425	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi && $prio = true ]]
1426	then
1427	printf "\n >>> submit with HLRN qos-feature hiprio...\n"
1428	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost"
1429	elif [[ $remote_host = ibmku ]]
1430	then
1431	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1432	else
1433	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1434	fi
1435
1436	[[ $verify = true ]] && printf " >>> o.k.\n"
1437	else
1438	cd $job_catalog
1439	if [[ $(echo $local_host \| cut -c1-5) = lcsgi \|\| $(echo $local_host \| cut -c1-3) = ibm ]]
1440	then
1441	eval $submcom $job_on_remhost
1442	elif [[ $local_host = lcfimm \|\| $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyut ]]
1443	then
1444	chmod u+x $job_on_remhost
1445	echo "$submcom $job_on_remhost"
1446	eval $submcom $job_on_remhost
1447	elif [[ $local_host = nech ]]
1448	then
1449	if [[ $queue = default ]]
1450	then
1451	eval $submcom $job_on_remhost
1452	else
1453	eval $submcom -q $queue $job_on_remhost
1454	fi
1455	else
1456	qsub $job_on_remhost
1457	fi
1458
1459	# Jobfile must not be deleted on lctit/ibmku!! This will be done
1460	# only at the end of the job.
1461	if [[ $local_host != lctit && $local_host != ibmku ]]
1462	then
1463	rm $job_on_remhost
1464	fi
1465	cd - > /dev/null
1466	fi
1467	fi
1468
1469
1470
1471	# ABSCHLUSSARBEITEN
1472
1473	if [[ $no_submit = false ]]
1474	then
1475	rm $job_to_send
1476	fi
1477	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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