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source: palm/trunk/SCRIPTS/mrun @ 210

Last change on this file since 210 was 210, checked in by raasch, 15 years ago
updates in dvr routines for new dvr version
Property svn:keywords set to `Id Rev`
File size: 151.9 KB

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1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 210 2008-11-06 08:54:02Z raasch $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
117	# + netcdf/dvrp-options are read from configuration
118	# file, host identifier (local_host) is read from
119	# config file, code related to ftp filetransfer
120	# removed (incl. option -f)
121	# 19/06/07 - Siggi - time limit for cdata jobs increased
122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
123	# if new option -Y (coupling) is given,
124	# output of executables to aout_output removed,
125	# messages are immediately written to stdout instead
126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
128	# variables out to the nodes in coupled mode -disabled-
129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
131	# environment variables out to the nodes in coupled mode
132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
133	# suggestions
134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
135	# argument -g group_number, admit all sla* node_usage
136	# queues
137	# 30/10/07 - Marcus - further adjustments for queues on lctit
138	# 14/02/08 - Bjoern - link of restart files with long file name possible
139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
140	# true, mrun tries "ln -f" on local output and resorts
141	# to "cp" or "cp -r" on error
142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
143	# which allows the user to choose his own job catalog
144	# by setting job_catalog in the configuration file
145	# (default is ~/job_queue),
146	# workaround for mpiexec with -env option,
147	# adjustments for lcxt4 (Bergen Center for Computational
148	# Science)
149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
150	# true, mrun tries "ln -f" on local input and resorts
151	# to "cp" or "cp -r" on error
152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
153	# 14/07/08 - Siggi - adjustments for lcsgih
154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
158	# argument
159
160	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
161
162	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
163	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
164	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
165
166	AddFilenames=""
167	additional_conditions=""
168	add_source_path=""
169	afname=""
170	archive_save=true
171	archive_system=none
172	compiler_name=""
173	cond1=""
174	cond2=""
175	config_file=.mrun.config
176	coupled_dist=""
177	coupled_mode="mpi1"
178	cpp_opts=""
179	cpp_options=""
180	cpumax=0
181	cpurest=0
182	delete_temporary_catalog=true
183	do_batch=false
184	do_compile=true
185	do_remote=false
186	do_stagein=true
187	do_stageout=true
188	do_trace=false
189	email_notification=""
190	exclude=""
191	executable=""
192	execution_error=false
193	fimm=false
194	fname=test
195	fromhost=""
196	global_revision=""
197	group_number=none
198	host=""
199	host_file=""
200	hp=""
201	ignore_archive_error=false
202	input_list=""
203	interpreted_config_file=""
204	job_catalog="~/job_queue"
205	job_on_file=""
206	keep_data_from_previous_run=false
207	link_local_input=false
208	link_local_output=false
209	localhost_realname=$(hostname)
210	local_compile=false
211	locat=normal
212	mainprog=""
213	makefile=""
214	mc=$0
215	while [[ $(echo $mc \| grep -c "/") != 0 ]]
216	do
217	mc=`echo $mc \| cut -f2- -d"/"`
218	done
219	module_files=""
220	mrun_script_name=$mc
221	netcdf_inc=""
222	netcdf_lib=""
223	netcdf_support=false
224	node_usage=default
225	numprocs=""
226	numprocs_atmos=0
227	numprocs_ocean=0
228	OOPT=""
229	openmp=false
230	output_list=""
231	package_list=""
232	punkte="..........................................................."
233	queue=none
234	read_from_config=""
235	restart_run=false
236	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
237	if [[ $return_addres = 130.75.105.158 ]]
238	then
239	return_addres=172.20.25.41
240	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
241	fi
242	# if [[ $return_addres = 210.117.65.1 ]]
243	# if [[ $(nslookup `hostname` 2>&1 \| grep -c 210.117.65.1) = 1 ]]
244	# then
245	# [[ $localhost_realname = gfdl3.yonsei.ac.kr ]] && return_addres=165.132.26.56
246	# fi
247	return_password=""
248	return_username=$LOGNAME
249	remotecall=false
250	remote_username=""
251	run_coupled_model=false
252	run_mode=""
253	scirocco=false
254	store_on_archive_system=true
255	striche=" ----------------------------------------------------------------------------"
256	silent=false
257	source_list=""
258	source_path=SOURCE
259	tasks_per_node=""
260	threads_per_task=1
261	tmpcreate=false
262	tmp_data_catalog=""
263	transfer_problems=false
264	usern=$LOGNAME
265	working_directory=`pwd`
266	TOPT=""
267	XOPT=""
268	zeit=$( date \| cut -c 12-19 )
269
270	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
271	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
272
273	typeset -R30 calltime
274	typeset -L20 spalte1
275	typeset -L40 spalte2
276	typeset -L60 spalte3
277	typeset -L35 string1=`date`
278	typeset -L12 string2=$usern
279	typeset -L12 string3=$localhost_realname
280	typeset -L12 string4
281	typeset -L12 string5
282	typeset -L30 version="MRUN 2.0 Rev$Rev: 210 $"
283
284
285
286	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
287	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
288
289	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
290	# EXPORTIERT WERDEN
291	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
292	export group_number input_list memory numprocs output_list queue run_mode
293
294
295
296	# FEHLERBEHANDLUNG
297	# BEI EXIT:
298	trap 'rm -rf $working_directory/tmp_mrun
299	if [[ $locat != localhost ]]
300	then
301	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
302	# then
303	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
304	#MRUN-calls on $localhost
305	#
306	#date and time user localhost remotehost termination mrun-command
307	#--------------------------------------------------------------------------------------------------------------------
308	#%STATEND%
309	# chmod 666 ${mrun_path}/statistik/mrun_statistik
310	# fi
311	#
312	# # EINTRAG IN DIE STATISTIK-DATEI
313	# string4=$host
314	# string5=$locat
315	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
316	# then
317	# if [[ $do_batch = true ]]
318	# then
319	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
320	# else
321	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
322	# fi
323	# fi
324	echo " " > /dev/null
325	fi
326
327	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
328	then
329
330	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
331	(( i = 0 ))
332	while (( i < iec ))
333	do
334	(( i = i + 1 ))
335	printf "\n *** Execution of ERROR-command:\n"
336	printf " >>> ${err_command[$i]}\n"
337	eval ${err_command[$i]}
338	done
339	if [[ -n $interpreted_config_file ]] then
340	rm -rf $interpreted_config_file
341	fi
342	if [[ -n .mrun_environment ]] then
343	rm -rf .mrun_environment
344	fi
345	if [[ $tmpcreate = true ]]
346	then
347	printf "\n *** Contents of \"$TEMPDIR\":\n"
348	ls -al; cd
349	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
350	fi
351	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
352	then
353	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
354	fi
355	printf "\n\n+++ MRUN killed \n\n"
356	elif [[ $locat != control_c ]]
357	then
358	printf "\n\n --> all actions finished\n\n"
359	printf " Bye, bye $usern !!\n\n"
360	fi' exit
361
362
363	# BEI TERMINAL-BREAK:
364	trap 'rm -rf $working_directory/tmp_mrun
365	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
366	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
367	then
368	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
369	fi
370	printf "\n+++ MRUN killed by \"^C\" \n\n"
371	locat=control_c
372	exit
373	' 2
374
375
376	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
377	# BEEN SET
378	if [[ "$PALM_BIN" = "" ]]
379	then
380	printf "\n +++ environment variable PALM_BIN has not been set"
381	printf "\n please set it to the directory where the PALM scripts are located"
382	locat=palm_bin; exit
383	fi
384	export PATH=$PALM_BIN:$PATH
385
386
387
388	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
389	# FUER FOLGEJOBS BENOETIGT WIRD
390	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:Y: option
391	do
392	case $option in
393	(a) afname=$OPTARG;;
394	(A) store_on_archive_system=false; mc="$mc -A";;
395	(b) do_batch=true; mc="$mc -b";;
396	(B) delete_temporary_catalog=false; mc="$mc -B";;
397	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
398	(C) restart_run=true; mc="$mc -C";;
399	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
400	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
401	(F) job_on_file="-D"; mc="$mc -F";;
402	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
403	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
404	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
405	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
406	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
407	(I) ignore_archive_error=true; mc="$mc -I";;
408	(k) keep_data_from_previous_run=true; mc="$mc -k";;
409	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
410	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
411	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
412	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
413	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
414	(O) use_openmp=true; mc="$mc -O";;
415	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
416	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
417	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
418	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
419	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
420	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
421	(S) read_from_config=false; mc="$mc -S";;
422	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
423	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
424	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
425	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
426	(v) silent=true; mc="$mc -v";;
427	(x) do_trace=true;set -x; mc="$mc -x";;
428	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
429	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
430	(\?) printf "\n +++ unknown option $OPTARG \n"
431	printf "\n --> type \"$0 ?\" for available options \n"
432	locat=parameter;exit;;
433	esac
434	done
435
436
437	# EVTL. POSITIONSPARAMETER EINLESEN
438	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
439	shift OPTIND-1
440
441
442	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
443	if [[ "$1" = "?" ]]
444	then
445	(printf "\n *** mrun can be called as follows:\n"
446	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -Y.. <modus>\n"
447	printf "\n Description of available options:\n"
448	printf "\n Option Description Default-Value"
449	printf "\n -a base name of input files equiv. -d"
450	printf "\n -A no archiving when using file-attribute fl"
451	printf "\n -b batch-job on local machine ---"
452	printf "\n -B do not delete temporary directory at end ---"
453	printf "\n -c configuration file .mrun.config"
454	printf "\n -d base name of files attached to program test"
455	printf "\n -D preprocessor(cpp)-directives \"\" "
456	printf "\n -F create remote job file only ---"
457	printf "\n -h execution host $localhost_realname"
458	printf "\n -i INPUT control list \"\" "
459	printf "\n -I archiving errors of previous batch-jobs"
460	printf "\n will be ignored"
461	printf "\n -k keep data from previous run"
462	printf "\n -K additional conditions for controling"
463	printf "\n usage of conditional code and"
464	printf "\n env-variables in configuration file \"\" "
465	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
466	printf "\n -M Makefile name Makefile"
467	printf "\n -n node usage (shared/not_shared) depending on -h"
468	printf "\n -o OUTPUT control list \"\" "
469	printf "\n -O use OpenMP ---"
470	printf "\n -p software package list \"\" "
471	printf "\n -q queue \"$queue\" "
472	printf "\n -r run control list (combines -i -o) \"\" "
473	printf "\n -s filenames of routines to be compiled \"\" "
474	printf "\n must end with .f, .f90, .F, or .c !"
475	printf "\n use \"..\" for more than one file and wildcards"
476	printf "\n -s TEST compiles all files with w-permit"
477	printf "\n -S config file interpreted by shellscript ---"
478	printf "\n -t allowed cpu-time in seconds (batch) 0"
479	printf "\n -T tasks per node depending on -h"
480	printf "\n -u username on remote machine \"\" "
481	printf "\n -v no prompt for confirmation ---"
482	printf "\n -x tracing of mrun for debug purposes ---"
483	printf "\n -X # of processors (on parallel machines) 1"
484	printf "\n -Y run coupled model, \"#1 #2\" with"
485	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
486	printf "\n "
487	printf "\n Possible values of positional parameter <modus>:"
488	printf "\n \"?\" - this outline \n\n") \| more
489	exit
490	elif [[ "$1" != "" ]]
491	then
492	printf "\n +++ positional parameter $1 unknown \n"
493	locat=parameter; exit
494	fi
495
496
497
498	# KURZE STARTMELDUNG
499	printf "\n*** $version "
500	printf "\n will be executed. Please wait ..."
501
502
503
504	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
505	if [[ ! -f $config_file ]]
506	then
507	printf "\n\n +++ configuration file: "
508	printf "\n $config_file"
509	printf "\n does not exist"
510	locat=connect; exit
511	fi
512
513
514	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
515	line=""
516	grep "%host_identifier" $config_file > tmp_mrun
517	while read line
518	do
519	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
520	then
521	HOSTNAME=`echo $line \| cut -d" " -s -f2`
522	host_identifier=`echo $line \| cut -d" " -s -f3`
523	if [[ $localhost_realname = $HOSTNAME ]]
524	then
525	localhost=$host_identifier
526	break
527	fi
528	fi
529	done < tmp_mrun
530
531	if [[ "$localhost" = "" ]]
532	then
533	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
534	printf "\n for local host \"$localhost_realname\"."
535	printf "\n Please add line"
536	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
537	printf "\n to the configuration file."
538	locat=localhost; exit
539	fi
540
541
542	# HOSTSPEZIFISCHE VARIABLEN SETZEN
543	case $localhost_realname in
544	(breg-en0\|berni-en0) archive_system=tivoli;;
545	(cs*) archive_system=ut;;
546	(fimm.bccs.uib.no) fimm=true;;
547	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
548	(hreg-en0\|hanni-en0) archive_system=tivoli;;
549	(scirocco) scirocco=true;;
550	esac
551
552
553
554	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
555	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
556	[[ "$afname" = "" ]] && afname=$fname
557
558
559	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
560	if [[ "$run_mode" != "" ]]
561	then
562	input_list="$input_list $run_mode"
563	output_list="$output_list $run_mode"
564	fi
565
566
567	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
568	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
569	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
570	# STARTET)
571	if [[ "$fromhost" = "" ]]
572	then
573	fromhost=$localhost
574	fi
575
576
577	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
578	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
579	then
580	source_list=TEST
581	local_compile=true
582	host=$localhost
583	fi
584
585
586	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
587	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
588	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
589	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
590	if [[ -n $host && "$host" != $localhost ]]
591	then
592	do_batch=true
593	do_remote=true
594	case $host in
595	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|neck\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4) true;;
596	(*) printf "\n"
597	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
598	printf "\n is not available"
599	locat=nqs; (( iec = 0 )); exit;;
600	esac
601	else
602	host=$localhost
603	fi
604
605
606	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
607	if [[ -n $additional_conditions ]]
608	then
609	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
610	cond1=`echo $additional_conditions \| cut -d" " -f1`
611	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
612	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
613	if [[ -n $dummy ]]
614	then
615	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
616	locat=options; exit
617	fi
618	fi
619
620
621	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
622	if [[ $run_coupled_model = true ]]
623	then
624
625	if [[ -n $coupled_dist ]]
626	then
627
628	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
629	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
630
631	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
632	then
633
634	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
635	printf "\n PEs (total) : $numprocs"
636	printf "\n PEs (atmosphere): $numprocs_atmos"
637	printf "\n PEs (ocean) : $numprocs_ocean"
638	locat=coupling; exit
639
640	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
641	# THIS SHOULD BE REMOVED IN FUTURE
642	elif (( $numprocs_ocean != $numprocs_atmos ))
643	then
644
645	printf "\n +++ currently only 1:1 topologies are supported"
646	printf "\n PEs (total) : $numprocs"
647	printf "\n PEs (atmosphere): $numprocs_atmos"
648	printf "\n PEs (ocean) : $numprocs_ocean"
649	(( numprocs_atmos = $numprocs / 2 ))
650	(( numprocs_ocean = $numprocs / 2 ))
651	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
652
653	fi
654
655	else
656
657	(( numprocs_ocean = $numprocs / 2 ))
658	(( numprocs_atmos = $numprocs / 2 ))
659
660	fi
661	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
662
663	# GET coupled_mode FROM THE CONFIG FILE
664	line=""
665	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
666	while read line
667	do
668	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
669	then
670	coupled_mode="mpi2"
671	fi
672	done < tmp_mrun
673
674	fi
675
676
677	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
678	# ARCHIVIERUNG FEHLGESCHLAGEN IST
679	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
680	then
681	if [[ $ignore_archive_error = false ]]
682	then
683	printf "\n +++ data archiving of previous run failed"
684	printf "\n see directory \~/job_queue on remote machine"
685	locat=archive; exit
686	else
687	printf "\n +++ warning: data archiving in a previous run failed"
688	printf "\n MRUN continues, trying to get backup copy"
689	fi
690	fi
691
692
693
694	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
695	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
696	if [[ "$read_from_config" = false ]]
697	then
698
699	[[ $silent = false ]] && printf "\n Reading the configuration file... "
700	while read zeile
701	do
702	[[ $silent = false ]] && printf "."
703
704
705	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
706	# ERSETZEN
707	eval zeile=\"$zeile\"
708
709
710	# INTERPRETATION DER ZEILE
711	if [[ "$(echo $zeile)" = "" ]]
712	then
713	# LEERZEILE, KEINE AKTION
714	continue
715
716	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
717	then
718
719	# ZEILE IST KOMMENTARZEILE
720	true
721
722	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
723	then
724
725	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
726	zeile=$(echo $zeile \| cut -c2-)
727	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
728	var=`echo $zeile \| cut -d" " -f1`
729	value=`echo $zeile \| cut -d" " -s -f2`
730	for_host=`echo $zeile \| cut -d" " -s -f3`
731	for_cond1=`echo $zeile \| cut -d" " -s -f4`
732	for_cond2=`echo $zeile \| cut -d" " -s -f5`
733
734	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
735	then
736
737	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
738	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
739	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
740
741
742	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
743	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
744	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
745	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
746	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
747	# KONFIGURATIONSDATEI
748	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
749	then
750	eval $var=\$value
751
752	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
753	if [[ $do_trace = true ]]
754	then
755	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
756	fi
757	fi
758
759	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
760	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
761	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
762	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
763	if [[ $var = host ]]
764	then
765	if [[ -n $host && "$host" != $localhost ]]
766	then
767	do_batch=true
768	do_remote=true
769	case $host in
770	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|neck\|unics\|lcxt4) true;;
771	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
772	printf "\n is not available"
773	locat=nqs; exit;;
774	esac
775	else
776	host=$localhost
777	fi
778	fi
779
780	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
781	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
782	# DEN PROGRAMMEN BENOETIGT WERDEN
783	export $var
784	fi
785
786
787
788
789	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
790	then
791
792	# ZEILE DEFINIERT ERROR-KOMMANDO
793	(( iec = iec + 1 ))
794	zeile=$(echo $zeile \| cut -c4-)
795	err_command[$iec]="$zeile"
796
797	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
798	then
799
800	# ZEILE DEFINIERT INPUT-KOMMANDO
801	(( iic = iic + 1 ))
802	zeile=$(echo $zeile \| cut -c4-)
803	in_command[$iic]="$zeile"
804
805	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
806	then
807
808	# ZEILE DEFINIERT OUTPUT-KOMMANDO
809	(( ioc = ioc + 1 ))
810	zeile=$(echo $zeile \| cut -c4-)
811	out_command[$ioc]="$zeile"
812
813	else
814
815	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
816	# s2a: in/out - Feld
817	# s2b: loc - Feld (optional)
818	# s2c: tr/ar - Feld (optional)
819	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
820	s1=`echo $zeile \| cut -d" " -f1`
821	s2=`echo $zeile \| cut -d" " -s -f2`
822	s2a=$(echo $s2 \| cut -d":" -f1)
823	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
824	then
825	s2b=""
826	s2c=""
827	else
828	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
829	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
830	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
831	fi
832	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
833	s3=`echo $zeile \| cut -d" " -f3`
834	s4=`echo $zeile \| cut -d" " -s -f4`
835	s5=`echo $zeile \| cut -d" " -s -f5`
836	s6=`echo $zeile \| cut -d" " -s -f6`
837
838
839	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
840	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
841	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
842	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
843	# HANDEN SEIN MUSS (D.H. s2b = loc)
844	IFSALT="$IFS"; IFS="$IFS:"
845	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
846	then
847	found=false
848	for actual in $input_list
849	do
850	for formal in $s3
851	do
852	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
853	done
854	done
855	if [[ $found = true ]]
856	then
857	(( iin = iin + 1 ))
858	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
859	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
860	extin[$iin]=$s6
861	fi
862	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
863	then
864	found=false
865	for actual in $output_list
866	do
867	for formal in $s3
868	do
869	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
870	done
871	done
872	if [[ $found = true ]]
873	then
874	(( iout = iout + 1 ))
875	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
876	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
877	fi
878	elif [[ "$s2a" != in && "$s2a" != out ]]
879	then
880	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
881	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
882	locat=connect; exit
883	fi
884	IFS="$IFSALT"
885	fi
886	done < $config_file
887
888	else
889
890
891	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
892	[[ $silent = false ]] && printf "..."
893	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
894	export interpreted_config_file=.icf.$RANDOM
895
896
897
898	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
899	# VERFUEGUNG STELLEN
900	cat > .mrun_environment << %%END%%
901	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
902	config_file = '$config_file', do_remote = '$do_remote',
903	do_trace = '$do_trace', host = '$host',
904	input_list = '$input_list', icf = '$interpreted_config_file',
905	localhost = '$localhost', output_list = '$output_list' /
906
907	%%END%%
908
909	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
910	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
911	mrun_memory=$memory
912	mrun_group_number=$group_number
913	mrun_cpumax=$cpumax
914	mrun_numprocs=$numprocs
915
916	if [[ $localhost_realname = "gate" ]]
917	then
918	interpret_config_gate.x
919	else
920	interpret_config.x
921	fi
922	rm .mrun_environment
923
924
925	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
926	chmod u+x $interpreted_config_file
927	export PATH=$PATH:.
928	. $interpreted_config_file
929	rm $interpreted_config_file
930
931
932	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
933	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
934	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
935	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
936	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
937
938	fi
939
940
941	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
942	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
943	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
944	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
945	if [[ "$SOURCES_COMPLETE" = "" ]]
946	then
947
948	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
949	# VEREINBART WURDE
950	source_path=""
951	line=""
952	grep "%source_path" $config_file > tmp_mrun
953	while read line
954	do
955	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
956	then
957	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
958	then
959	global_source_path=`echo $line \| cut -d" " -f2`
960	fi
961	fi
962	done < tmp_mrun
963
964	line=""
965	found=false
966	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
967	while read line
968	do
969	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
970	then
971	if [[ $found = true ]]
972	then
973	printf "\n\n +++ more than one source path found in configuration file"
974	printf "\n for local host \"$localhost\" "
975	locat=source_path; exit
976	fi
977	source_path=`echo $line \| cut -d" " -f2`
978	found=true
979	fi
980	done < tmp_mrun
981	rm tmp_mrun
982
983	if [[ "$source_path" = "" ]]
984	then
985	if [[ "$global_source_path" != "" ]]
986	then
987	source_path=$global_source_path
988	else
989	printf "\n\n +++ no source path found in configuration file"
990	printf "\n for local host \"$localhost\" "
991	locat=source_path; exit
992	fi
993	fi
994	eval source_path=$source_path
995
996	if [[ ! -d $source_path ]]
997	then
998	printf "\n\n +++ source path \"$source_path\" on local host"
999	printf "\n \"$localhost\" does not exist"
1000	locat=source_path; exit
1001	fi
1002
1003	fi
1004
1005
1006	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1007	# DURCH OPTION -G MITGETEILT)
1008	if [[ "$global_revision" = "" ]]
1009	then
1010	global_revision=`svnversion $source_path 2>/dev/null`
1011	global_revision="Rev: $global_revision"
1012	fi
1013
1014
1015	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1016	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1017	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1018	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1019	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1020	if [[ -n $host && "$host" != $localhost ]]
1021	then
1022	do_batch=true
1023	do_remote=true
1024	case $host in
1025	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|neck\|unics\|lcxt4) true;;
1026	(*) printf "\n"
1027	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1028	printf "\n is not available"
1029	locat=nqs; (( iec = 0 )); exit;;
1030	esac
1031	else
1032	host=$localhost
1033	fi
1034
1035
1036	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1037	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1038	then
1039
1040	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1041	if [[ ! -n $numprocs ]]
1042	then
1043	printf "\n"
1044	printf "\n +++ option \"-K parallel\" requires additional specification"
1045	printf "\n of the number of processors to be used by"
1046	printf "\n mrun-option \"-X\" or by environment-variable"
1047	printf "\n \"numprocs\" in the configuration file"
1048	locat=numprocs; (( iec = 0 )); exit
1049	fi
1050
1051	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1052	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1053	# GESAMTPROZESSORANZAHL IST
1054	if [[ $host = nech \|\| $host = neck \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1055	then
1056	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1057	(( ival = $tasks_per_node ))
1058	(( pes = numprocs ))
1059	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1060	# then
1061	# (( pes = pes - 1 ))
1062	# fi
1063	(( ii = pes / ival ))
1064	if (( pes - ii * ival > 0 ))
1065	then
1066	printf "\n"
1067	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1068	printf "\n divisor of the total number of processors (option \"-X\")"
1069	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1070	locat=tasks_per_node; (( iec = 0 )); exit
1071	fi
1072	fi
1073
1074	# IBMY HAT NUR EINEN KNOTEN
1075	if [[ $host = ibmy ]]
1076	then
1077	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1078	then
1079	printf "\n"
1080	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1081	printf "\n total number of processors (option \"-X\")"
1082	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1083	locat=tasks_per_node; (( iec = 0 )); exit
1084	fi
1085	fi
1086
1087	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1088	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1089	if [[ $use_openmp = true ]]
1090	then
1091	threads_per_task=$tasks_per_node
1092	tasks_per_node=1
1093	fi
1094	OOPT="-O $threads_per_task"
1095	TOPT="-T $tasks_per_node"
1096
1097	# GESAMTZAHL DER KNOTEN BESTIMMEN
1098	if [[ "$tasks_per_node" != "" ]]
1099	then
1100	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1101	fi
1102
1103	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1104	# SETZEN
1105	if [[ $node_usage = default ]]
1106	then
1107	if [[ $host = ibms ]]
1108	then
1109	node_usage=shared
1110	elif [[ $host = lctit ]]
1111	then
1112	node_usage=sla3
1113	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1114	then
1115	node_usage=singlejob
1116	else
1117	node_usage=not_shared
1118	fi
1119	fi
1120
1121	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]]
1122	then
1123	printf "\n"
1124	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1125	printf "\n \"shared\" or \"not_shared\""
1126	locat=tasks_per_node; (( iec = 0 )); exit
1127	fi
1128
1129	fi
1130
1131	# PRUEFEN, OB HOSTFILE EXISTIERT
1132	if [[ -n $hostfile ]]
1133	then
1134	if [[ ! -f $hostfile ]]
1135	then
1136	printf "\n"
1137	printf "\n +++ hostfile \"$hostfile\" does not exist"
1138	locat=hostfile; exit
1139	fi
1140	fi
1141
1142	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1143	if [[ $host = ibmy && $do_remote = false ]]
1144	then
1145	if [[ ! -f $HOME/.rhosts ]]
1146	then
1147	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1148	printf "\n\n *** file:"
1149	printf "\n $HOME/.rhosts"
1150	printf "\n was created\n"
1151	fi
1152	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1153	then
1154	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1155	printf "\n\n *** file:"
1156	printf "\n $HOME/.rhosts"
1157	printf "\n was extended by the name of the current host\n"
1158	fi
1159	fi
1160
1161
1162
1163	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1164	if [[ $queue = none ]]
1165	then
1166	case $host in
1167	(ibmb) if [[ $node_usage = shared ]]
1168	then
1169	queue=cshare
1170	else
1171	queue=csolo
1172	fi;;
1173	(ibmh) if [[ $node_usage = shared ]]
1174	then
1175	queue=cshare
1176	else
1177	queue=csolo
1178	fi;;
1179	(ibmy) queue=parallel;;
1180	(lcsgib) queue=bigq;;
1181	(lcsgih) queue=bigq;;
1182	(lctit) queue=sla3;;
1183	(nech) queue=none;;
1184	(neck) queue=P;;
1185	(unics) queue=unics;;
1186	esac
1187	fi
1188
1189
1190	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1191	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1192	# ERMITTELN
1193	(( i = 0 ))
1194	while (( i < iin ))
1195	do
1196	(( i = i + 1 ))
1197	(( maxcycle = 0 ))
1198
1199	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1200	if [[ "${actionin[$i]}" = di ]]
1201	then
1202	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1203	# REM-MASCHINE AUSWERTEN
1204	eval filename=${pathin[$i]}/${endin[$i]}
1205	else
1206	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1207	# REM-MASCHINE AUSWERTEN
1208	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1209	fi
1210
1211	# PRUEFEN AUF VORHANDENSEIN
1212	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1213	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1214	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1215	then
1216	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1217	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1218	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1219	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1220	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1221	if [[ "${transin[$i]}" != "locopt" ]]
1222	then
1223	printf "\n\n +++ INPUT-file: "
1224	if [[ "${extin[$i]}" = "" ]]
1225	then
1226	printf "\n $filename"
1227	else
1228	printf "\n $filename.${extin[$i]}"
1229	fi
1230	printf "\n does not exist\n"
1231	locat=input; exit
1232	else
1233	transin[$i]="unavailable"
1234	fi
1235	else
1236
1237	# ZYKLUSNUMMER FESTSTELLEN
1238	ls -1 -d $filename > filelist 2>/dev/null
1239	ls -1 -d $filename.* >> filelist 2>/dev/null
1240	while read zeile
1241	do
1242	cycle=$(print $zeile \| cut -f2 -d".")
1243	if [[ "$cycle" = "$zeile" ]]
1244	then
1245	(( icycle = 0 ))
1246	elif [[ "$cycle" = "${extin[$i]}" ]]
1247	then
1248	(( icycle = 0 ))
1249	else
1250	(( icycle = $cycle ))
1251	fi
1252	if (( icycle > maxcycle ))
1253	then
1254	(( maxcycle = icycle ))
1255	file_to_be_used=$zeile
1256	fi
1257	done <filelist
1258	rm filelist
1259
1260	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1261	if (( maxcycle > 0 ))
1262	then
1263	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1264	then
1265	filename=${filename}.$maxcycle.${extin[$i]}
1266	else
1267	filename=${filename}.$maxcycle
1268	fi
1269	else
1270	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1271	then
1272	filename=${filename}.${extin[$i]}
1273	fi
1274	fi
1275
1276	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1277	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1278	absnamein[$i]=$filename
1279	if (( maxcycle > 0 ))
1280	then
1281	if [[ "${actionin[$i]}" = di ]]
1282	then
1283	frelin[$i]=${endin[$i]}.$maxcycle
1284	else
1285	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1286	fi
1287	else
1288	if [[ "${actionin[$i]}" = di ]]
1289	then
1290	frelin[$i]=${endin[$i]}
1291	else
1292	frelin[$i]=${afname}${endin[$i]}
1293	fi
1294	fi
1295
1296	fi
1297	done
1298
1299
1300	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1301	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1302	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1303	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1304	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1305	(( i = 0 ))
1306	while (( i < iout ))
1307	do
1308	(( i = i + 1 ))
1309	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1310	then
1311	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = trpe ]]
1312	then
1313	actionout[$i]=""
1314	elif [[ "${actionout[$i]}" = tra ]]
1315	then
1316	actionout[$i]=a
1317	fi
1318	(( maxcycle = 0 ))
1319	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1320	eval catalogname=${pathout[$i]}
1321	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1322	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1323	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1324	then
1325
1326	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1327	if cat /dev/null > $filename
1328	then
1329	rm $filename
1330	else
1331
1332	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1333	if [[ ! -d $catalogname ]]
1334	then
1335	if mkdir -p $catalogname
1336	then
1337	printf "\n\n *** directory:"
1338	printf "\n $catalogname"
1339	printf "\n was created\n"
1340	else
1341	printf "\n\n +++ OUTPUT-file:"
1342	printf "\n $filename"
1343	printf "\n cannot be created, because directory does not exist"
1344	printf "\n and cannot be created either"
1345	printf "\n"
1346	locat=output ; exit
1347	fi 2>/dev/null
1348	else
1349	printf "\n\n +++ OUTPUT-file:"
1350	printf "\n $filename"
1351	printf "\n cannot be created, although directory exists"
1352	printf "\n"
1353	locat=output ; exit
1354	fi
1355	fi 2>/dev/null
1356	else
1357
1358	# ZYKLUSNUMMER FESTSTELLEN
1359	ls -1 -d $filename > filelist 2>/dev/null
1360	ls -1 -d $filename.* >> filelist 2>/dev/null
1361	while read zeile
1362	do
1363	cycle=$(print $zeile \| cut -f2 -d".")
1364	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1365	then
1366	(( icycle = 1 ))
1367	else
1368	(( icycle = $cycle + 1 ))
1369	fi
1370	if (( icycle > maxcycle ))
1371	then
1372	(( maxcycle = icycle ))
1373	fi
1374	done <filelist
1375	rm filelist
1376	fi
1377
1378	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1379	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1380	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1381	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1382	if [[ "${actionout[$i]}" != a ]]
1383	then
1384	if (( maxcycle > 0 ))
1385	then
1386	filename=${filename}.$maxcycle
1387	if cat /dev/null > $filename
1388	then
1389	rm $filename
1390	else
1391	printf "\n +++ OUTPUT-file:"
1392	printf "\n $filename"
1393	printf "\n cannot be created"
1394	locat=output ; exit
1395	fi
1396	fi
1397	else
1398	(( maxcycle = maxcycle - 1 ))
1399	if (( maxcycle > 0 ))
1400	then
1401	filename=${filename}.$maxcycle
1402	fi
1403	fi
1404
1405	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1406	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1407	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1408	pathout[$i]=$filename
1409	if (( maxcycle > 0 ))
1410	then
1411	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1412	else
1413	frelout[$i]=${fname}${endout[$i]}
1414	fi
1415
1416	fi
1417	done
1418
1419
1420	# DAS DVRP-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1421	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1422	then
1423	if [[ "$dvrp_inc" = "" ]]
1424	then
1425	printf "\n\n +++ no value for \"dvrp_inc\" given in configuration file"
1426	printf "\n This is required for the dvrp_graphics package.\n"
1427	locat=dvrp; exit
1428	fi
1429	if [[ "$dvrp_lib" = "" ]]
1430	then
1431	printf "\n\n +++ no value for \"dvrp_lib\" given in configuration file"
1432	printf "\n This is required for the dvrp_graphics package.\n"
1433	locat=dvrp; exit
1434	fi
1435	fi
1436
1437
1438	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1439	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1440	# UEBERSETZT ZU WERDEN)
1441	if [[ "$mainprog" = "" && "$executable" = "" ]]
1442	then
1443	printf "\n +++ neither main program nor executable defined"
1444	locat=source; exit
1445	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1446	then
1447	printf "\n +++ main program as well as executable defined"
1448	locat=source; exit
1449	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1450	then
1451	do_compile=false
1452	fi
1453
1454
1455	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1456	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1457	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1458	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1459	then
1460	rm -rf SOURCES_FOR_RUN_$fname
1461	mkdir SOURCES_FOR_RUN_$fname
1462	fi
1463
1464
1465	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1466	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1467	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1468	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1469	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1470	then
1471
1472	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1473	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1474
1475
1476	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1477	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1478	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1479	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1480	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1481	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1482	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1483	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1484	# GESAMMELT
1485	if [[ "$source_list" = WRITE_PERMIT ]]
1486	then
1487
1488	source_list=""
1489	cd $source_path
1490
1491
1492	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1493	Names=$(ls -1 *.f90 2>&1)
1494	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1495	Names=$(ls -1 *.F90 2>&1)
1496	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1497	Names=$(ls -1 *.F 2>&1)
1498	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1499	Names=$(ls -1 *.f 2>&1)
1500	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1501	Names=$(ls -1 *.c 2>&1)
1502	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1503
1504
1505	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1506	for dateiname in $Filenames
1507	do
1508	if [[ -w $dateiname ]]
1509	then
1510	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1511	then
1512	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1513	source_list=$source_list"$dateiname "
1514	fi
1515	fi
1516	done
1517
1518	cd - > /dev/null
1519
1520
1521	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1522	then
1523
1524	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1525	source_list=""
1526	cd $source_path
1527
1528
1529	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1530	if [[ ! -d .svn ]]
1531	then
1532	printf "\n\n +++ source directory"
1533	printf "\n \"$source_path\" "
1534	printf "\n is not under control of \"subversion\"."
1535	printf "\n Please do not use mrun-option \"-s LOCALLY MODIFIED\"\n"
1536	fi
1537
1538
1539	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1540	Filenames=""
1541	svn status > tmp_mrun
1542	while read line
1543	do
1544	firstc=`echo $line \| cut -c1`
1545	if [[ $firstc = M \|\| $firstc = "?" ]]
1546	then
1547	Name=`echo "$line" \| cut -c8-`
1548	extension=`echo $Name \| cut -d. -f2`
1549	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1550	then
1551	Filenames="$Filenames "$Name
1552	fi
1553	fi
1554	done < tmp_mrun
1555
1556
1557	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1558	for dateiname in $Filenames
1559	do
1560	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1561	source_list=$source_list"$dateiname "
1562	done
1563
1564	cd - > /dev/null
1565
1566
1567	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1568	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1569	# VORHANDEN
1570	elif [[ "$source_list" != "" && $restart_run != true ]]
1571	then
1572
1573	cd $source_path
1574
1575	for filename in $source_list
1576	do
1577
1578	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1579	if [[ $(print $filename \| grep -c "/") != 0 ]]
1580	then
1581	printf "\n +++ source code file: $filename"
1582	printf "\n must not contain (\"/\") "
1583	locat=source; exit
1584	fi
1585
1586	if [[ ! -f $filename ]]
1587	then
1588	printf "\n +++ source code file: $filename"
1589	printf "\n does not exist"
1590	locat=source; exit
1591	else
1592	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1593	fi
1594
1595	done
1596
1597	cd - > /dev/null
1598
1599	fi
1600
1601
1602	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1603	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1604	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1605	if [[ $restart_run != true ]]
1606	then
1607
1608	if [[ ! -f "$source_path/$mainprog" ]]
1609	then
1610	printf "\n\n +++ main program: $mainprog"
1611	printf "\n does not exist in source directory"
1612	printf "\n \"$source_path\"\n"
1613	locat=source; exit
1614	else
1615	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1616	then
1617	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1618	source_list=${mainprog}" $source_list"
1619	fi
1620	fi
1621	fi
1622
1623
1624	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1625	if [[ $restart_run != true && "$add_source_path" != "" ]]
1626	then
1627
1628	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1629	if [[ ! -d $add_source_path ]]
1630	then
1631	printf "\n\n +++ WARNING: additional source code directory"
1632	printf "\n \"$add_source_path\" "
1633	printf "\n does not exist or is not a directory."
1634	printf "\n No source code will be used from this directory!\n"
1635	add_source_path=""
1636	sleep 3
1637	else
1638
1639	cd $add_source_path
1640
1641	Names=$(ls -1 *.f90 2>&1)
1642	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1643	Names=$(ls -1 *.F90 2>&1)
1644	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1645	Names=$(ls -1 *.F 2>&1)
1646	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1647	Names=$(ls -1 *.f 2>&1)
1648	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1649	Names=$(ls -1 *.c 2>&1)
1650	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1651
1652	cd - > /dev/null
1653	cd SOURCES_FOR_RUN_$fname
1654
1655	for dateiname in $AddFilenames
1656	do
1657	if [[ -f $dateiname ]]
1658	then
1659	printf "\n +++ source code file \"$dateiname\" found in additional"
1660	printf "\n source code directory \"$add_source_path\" "
1661	printf "\n as well as in directory \"$source_path\"."
1662	locat=source; exit
1663	fi
1664
1665	cp $add_source_path/$dateiname .
1666	source_list="$source_list $dateiname"
1667
1668	# Default User-Interface von der Liste entfernen, falls Datei
1669	# ein User-Interface enthaelt
1670	if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1671	then
1672	if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1673	then
1674	rm -rf user_interface.f90
1675	source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1676	printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1677	printf "\n since a user-interface is found in file"
1678	printf "\n \"$add_source_path/$dateiname\" \n"
1679	sleep 3
1680	else
1681	printf "\n\n *** user-interface file \"$dateiname\" "
1682	printf "\n added to the files to be translated \n"
1683	sleep 3
1684	fi
1685	fi
1686	done
1687
1688	cd - > /dev/null
1689	fi
1690	fi
1691
1692
1693	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1694	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1695	if [[ $restart_run != true && -n $package_list ]]
1696	then
1697
1698	cd $source_path
1699
1700	for package in $package_list
1701	do
1702
1703	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1704
1705	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1706	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1707	# LIEFERT
1708	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1709
1710
1711	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1712	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1713	for source_list_name in $package_source_list
1714	do
1715	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1716	then
1717
1718	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1719	ending=`echo $source_list_name \| cut -f2 -d.`
1720	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1721	then
1722	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1723	source_list="$source_list $source_list_name"
1724	fi
1725	fi
1726	done
1727	done
1728
1729	cd - > /dev/null
1730	fi
1731
1732
1733	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1734	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1735	if [[ "$restart_run" != true ]]
1736	then
1737	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1738	if [[ ! -f $makefile ]]
1739	then
1740	printf "\n +++ file \"$makefile\" does not exist"
1741	locat=make; exit
1742	else
1743	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1744	fi
1745	fi
1746
1747	fi # do_compile=true
1748
1749
1750	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1751	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1752	if [[ $do_compile = true ]]
1753	then
1754
1755	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1756	# ZUSAMMENSETZEN
1757	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1758	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1759	then
1760	cpp_options="${cpp_options},-D__ibm=__ibm"
1761	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1762	then
1763	cpp_options="$cpp_options -D__nec"
1764	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1765	then
1766	cpp_options="$cpp_options -D__lc"
1767	else
1768	cpp_options="$cpp_options -D__$localhost"
1769	fi
1770
1771	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1772	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1773	then
1774	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1775	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1776	else
1777	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1778	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1779	fi
1780
1781	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1782	if [[ -n $package_list ]]
1783	then
1784	for package in $package_list
1785	do
1786	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1787	then
1788	if [[ $package != "dvrp_graphics+1PE" ]]
1789	then
1790	cpp_options="${cpp_options},-D__$package=__$package"
1791	else
1792	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1793	export use_seperate_pe_for_dvrp_output=true
1794	fi
1795	else
1796	if [[ $package != "dvrp_graphics+1PE" ]]
1797	then
1798	cpp_options="$cpp_options -D__$package"
1799	else
1800	cpp_options="$cpp_options -D__dvrp_graphics"
1801	export use_seperate_pe_for_dvrp_output=true
1802	fi
1803	fi
1804	done
1805	fi
1806
1807	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1808	if [[ -n $cpp_opts ]]
1809	then
1810	for popts in $cpp_opts
1811	do
1812	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1813	then
1814	cpp_options="${cpp_options},-D__$popts=__$popts"
1815	else
1816	cpp_options="$cpp_options -D__$popts"
1817	fi
1818	done
1819	fi
1820
1821	else
1822
1823
1824	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1825	if [[ $do_remote = false ]]
1826	then
1827	if [[ ! -f $executable ]]
1828	then
1829	printf "\n +++ executable file: $executable"
1830	printf "\n does not exist"
1831	locat=executable; exit
1832	fi
1833	fi
1834	fi
1835
1836
1837	# JOBMODUS FESTSTELLEN
1838	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1839	then
1840	jobmo=BATCH
1841	else
1842	jobmo=INTERACTIVE
1843	fi
1844
1845
1846	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1847	# DURCH BENUTZER ANDERWEITIG VEREINBART
1848	if [[ "$compiler_name" = "" ]]
1849	then
1850
1851	printf "\n +++ no compiler specified for \"$localhost $cond1 $cond2\""
1852	locat=compiler_name; exit
1853
1854	fi
1855
1856
1857	# COMPILER AUF NECK UEBERSCHREIBEN
1858	[[ $localhost = neck ]] && compiler_name=mpif90
1859
1860
1861
1862	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1863	kennung=$RANDOM
1864	if [[ "$tmp_user_catalog" = "" ]]
1865	then
1866	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1867	then
1868	tmp_user_catalog=$TMPDIR
1869	elif [[ $localhost = nech ]]
1870	then
1871	tmp_user_catalog=$WRKSHR
1872	else
1873	tmp_user_catalog=/tmp
1874	fi
1875	fi
1876	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1877
1878
1879	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1880	# BESTIMMEN
1881	if [[ "$tmp_data_catalog" = "" ]]
1882	then
1883	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1884	then
1885	tmp_data_catalog=$WORK/mrun_restart_data
1886	elif [[ $localhost = nech ]]
1887	then
1888	tmp_data_catalog=$WRKSHR/mrun_restart_data
1889	else
1890	tmp_data_catalog=/tmp/mrun_restart_data
1891	fi
1892	fi
1893
1894
1895	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1896	# ERSETZEN
1897	if [[ $do_remote = false && $do_compile = true ]]
1898	then
1899	eval fopts=\"$fopts\"
1900	eval lopts=\"$lopts\"
1901	fi
1902
1903
1904
1905	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1906	fopts="$fopts $netcdf_inc $dvrp_inc"
1907	lopts="$lopts $netcdf_lib $dvrp_lib"
1908	ROPTS="$ropts"
1909	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 ) && -n $numprocs ]]
1910	then
1911	XOPT="-X $numprocs"
1912	fi
1913
1914
1915
1916	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1917	# GRAMM BENOETIGT
1918	done=false
1919	while [[ $done = false ]]
1920	do
1921	cputime=$cpumax
1922	if (( $cputime == 0 ))
1923	then
1924	printf "\n +++ cpu-time is undefined"
1925	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1926	printf "\n >>> "
1927	read cputime 1>/dev/null 2>&1
1928	else
1929	done=true
1930	fi
1931	cpumax=$cputime
1932	done
1933
1934	(( minuten = cputime / 60 ))
1935	(( sekunden = cputime - minuten * 60 ))
1936
1937
1938	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1939	if [[ $do_batch = true ]]
1940	then
1941	done=false
1942	while [[ $done = false ]]
1943	do
1944	if (( memory == 0 ))
1945	then
1946	printf "\n +++ memory demand is undefined"
1947	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1948	printf "\n >>> "
1949	read memory 1>/dev/null 2>&1
1950	else
1951	done=true
1952	fi
1953	done
1954	fi
1955
1956
1957	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1958	if [[ $do_remote = true && -z $remote_username ]]
1959	then
1960	while [[ -z $remote_username ]]
1961	do
1962	printf "\n +++ username on remote host \"$host\" is undefined"
1963	printf "\n >>> Please type username:"
1964	printf "\n >>> "
1965	read remote_username
1966	done
1967	mc="$mc -u$remote_username"
1968	fi
1969
1970	###########################################################################
1971	# HEADER-AUSGABE
1972	###########################################################################
1973
1974
1975	calltime=$(date)
1976	printf "\n"
1977	# [[ $silent = false ]] && clear
1978	printf "#--------------------------------------------------------------# \n"
1979	printf "\| $version$calltime \| \n"
1980	printf "\| \| \n"
1981	spalte1="called on:"; spalte2=$localhost_realname
1982	printf "\| $spalte1$spalte2 \| \n"
1983	if [[ $local_compile = false ]]
1984	then
1985	if [[ $do_remote = true ]]
1986	then
1987	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
1988	else
1989	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
1990	fi
1991	else
1992	spalte1="compiling test only!"; spalte2=""
1993	fi
1994	printf "\| $spalte1$spalte2 \| \n"
1995	if [[ -n $numprocs ]]
1996	then
1997	spalte1="number of PEs:"; spalte2=$numprocs
1998	printf "\| $spalte1$spalte2 \| \n"
1999	fi
2000	if [[ -n $tasks_per_node ]]
2001	then
2002	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2003	printf "\| $spalte1$spalte2 \| \n"
2004	fi
2005	if [[ $threads_per_task != 1 ]]
2006	then
2007	spalte1="threads per task:"; spalte2="$threads_per_task"
2008	printf "\| $spalte1$spalte2 \| \n"
2009	fi
2010	printf "\| \| \n"
2011	if [[ $do_compile = true ]]
2012	then
2013	spalte1=cpp-directives:; spalte2=$cpp_options
2014	printf "\| $spalte1$spalte2 \| \n"
2015	zeile=$(echo "$cpp_options" \| cut -c41-)
2016	while [[ "$zeile" != "" ]]
2017	do
2018	spalte1=""
2019	spalte2=$zeile
2020	printf "\| $spalte1$spalte2 \| \n"
2021	zeile=$(echo "$zeile" \| cut -c41-)
2022	done
2023
2024	spalte1=compiler-options:; spalte2="$fopts"
2025	printf "\| $spalte1$spalte2 \| \n"
2026	zeile=$(echo "$fopts" \| cut -c41-)
2027	while [[ "$zeile" != "" ]]
2028	do
2029	spalte1=""
2030	spalte2=$zeile
2031	printf "\| $spalte1$spalte2 \| \n"
2032	zeile=$(echo "$zeile" \| cut -c41-)
2033	done
2034
2035	spalte1=linker-options:; spalte2=$lopts
2036	printf "\| $spalte1$spalte2 \| \n"
2037	zeile=$(echo "$lopts" \| cut -c41-)
2038	while [[ "$zeile" != "" ]]
2039	do
2040	spalte1=""
2041	spalte2=$zeile
2042	printf "\| $spalte1$spalte2 \| \n"
2043	zeile=$(echo "$zeile" \| cut -c41-)
2044	done
2045
2046	spalte1="main program":; spalte2=$mainprog
2047	printf "\| $spalte1$spalte2 \| \n"
2048	else
2049	spalte1=executable:; spalte2=$executable
2050	printf "\| $spalte1$spalte2 \| \n"
2051	fi
2052	printf "\| \| \n"
2053	spalte1="base name of files":; spalte2=$fname
2054	printf "\| $spalte1$spalte2 \| \n"
2055	if [[ $fname != $afname ]]
2056	then
2057	spalte1="base name of input files":; spalte2=$afname
2058	printf "\| $spalte1$spalte2 \| \n"
2059	fi
2060	spalte1="INPUT control list":; spalte2=$input_list
2061	printf "\| $spalte1$spalte2 \| \n"
2062	spalte1="OUTPUT control list":; spalte2=$output_list
2063	printf "\| $spalte1$spalte2 \| \n"
2064
2065	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2066	then
2067	spalte1="memory demand / PE":; spalte2="$memory MB"
2068	printf "\| $spalte1$spalte2 \| \n"
2069	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2070	printf "\| $spalte1$spalte2 \| \n"
2071	fi
2072
2073	if [[ $do_compile = true ]]
2074	then
2075	printf "\| \| \n"
2076	printf "\| Files to be compiled: \| \n"
2077	zeile=$source_list
2078	while [[ "$zeile" != "" ]]
2079	do
2080	spalte3=$zeile
2081	printf "\| $spalte3 \| \n"
2082	zeile=$(echo "$zeile" \| cut -c61-)
2083	done
2084	fi
2085	printf "#--------------------------------------------------------------#"
2086
2087
2088
2089	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2090	if [[ $do_trace = true ]]
2091	then
2092	(( i = 0 ))
2093	while (( i < iin ))
2094	do
2095	(( i = i + 1 ))
2096	if (( i == 1 ))
2097	then
2098	printf "\n\n >>> INPUT-file assignments:\n"
2099	fi
2100	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2101	done
2102	(( i = 0 ))
2103	while (( i < iout ))
2104	do
2105	(( i = i + 1 ))
2106	if (( i == 1 ))
2107	then
2108	printf "\n\n >>> OUTPUT-file assignments:\n"
2109	fi
2110	printf "\n ${localout[$i]} : ${pathout[$i]}"
2111	done
2112	(( i = 0 ))
2113	while (( i < iic ))
2114	do
2115	(( i = i + 1 ))
2116	if (( i == 1 ))
2117	then
2118	printf "\n\n >>> INPUT-commands:\n"
2119	fi
2120	printf "\n ${in_command[$i]}"
2121	done
2122	(( i = 0 ))
2123	while (( i < ioc ))
2124	do
2125	(( i = i + 1 ))
2126	if (( i == 1 ))
2127	then
2128	printf "\n\n >>> OUTPUT-commands:\n"
2129	fi
2130	printf "\n ${out_command[$i]}"
2131	done
2132	fi
2133
2134
2135	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2136	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2137	then
2138	antwort=dummy
2139	printf "\n\n"
2140	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2141	do
2142	printf " >>> everything o.k. (y/n) ? "
2143	read antwort
2144	done
2145	if [[ $antwort = n \|\| $antwort = N ]]
2146	then
2147	locat=user_abort; (( iec = 0 )); exit
2148	fi
2149	if [[ $do_batch = true ]]
2150	then
2151	printf " >>> batch-job will be created and submitted"
2152	else
2153	if [[ $local_compile = false ]]
2154	then
2155	printf " >>> MRUN will now continue to execute on this machine"
2156	else
2157	printf " >>> a test compilation will now be carried out on this machine"
2158	fi
2159	fi
2160	fi
2161
2162
2163
2164
2165	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2166	# CHENDE AKTIONEN DURCHGEFUEHRT
2167	if [[ $do_batch = false ]]
2168	then
2169
2170
2171	# TEMPORAEREN KATALOG ERZEUGEN
2172	mkdir -p $TEMPDIR
2173	chmod go+rx $TEMPDIR
2174	tmpcreate=true
2175
2176
2177	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2178	# TEMPORAERES VERZEICHNIS KOPIEREN
2179	if [[ $do_compile = true ]]
2180	then
2181
2182	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2183	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2184	if [[ $localhost = nech ]]
2185	then
2186	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2187	if mkdir -p $TEMPDIR_COMPILE
2188	then
2189	printf "\n *** \"$TEMPDIR_COMPILE\" "
2190	printf "\n is generated as temporary directory for cross compiling\n"
2191	else
2192	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2193	printf "\n needed for cross compilation failed"
2194	locat=compile
2195	exit
2196	fi
2197	else
2198	TEMPDIR_COMPILE=$TEMPDIR
2199	fi
2200
2201
2202	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2203	line=""
2204	grep "%depository_path" $config_file > tmp_mrun
2205	while read line
2206	do
2207	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2208	then
2209	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2210	then
2211	global_depository_path=`echo $line \| cut -d" " -s -f2`
2212	fi
2213	fi
2214	done < tmp_mrun
2215
2216	line=""
2217	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2218	while read line
2219	do
2220	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2221	then
2222	local_depository_path=`echo $line \| cut -d" " -s -f2`
2223	fi
2224	done < tmp_mrun
2225
2226	if [[ "$local_depository_path" = "" ]]
2227	then
2228	if [[ "$global_depository_path" != "" ]]
2229	then
2230	local_depository_path=$global_depository_path
2231	else
2232	printf "\n\n +++ no depository path found in configuration file"
2233	printf "\n for local host \"$localhost\" "
2234	printf "\n please set \"\%depository_path\" in configuration file\n"
2235	locat=config_file; exit
2236	fi
2237	fi
2238	eval local_depository_path=$local_depository_path
2239
2240	basename=`print $mainprog \| cut -f1 -d"."`
2241	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2242	if [[ ! -f $make_depository ]]
2243	then
2244	printf "\n"
2245	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2246	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2247	else
2248	cp $make_depository $TEMPDIR_COMPILE
2249	cd $TEMPDIR_COMPILE
2250	tar -xf $make_depository > /dev/null 2>&1
2251	cd - > /dev/null
2252	fi
2253
2254	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2255
2256	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2257	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2258	# MAKEFILE EINTRAGEN
2259	cd $TEMPDIR_COMPILE
2260	interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2261	if [[ "$interface_file" != "" ]]
2262	then
2263	interface_file=`echo $interface_file \| cut -d"." -f1`
2264	mv Makefile Makefile_old
2265	sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2266	fi
2267	cd - > /dev/null
2268	else
2269	cp $executable ${TEMPDIR}/a.out
2270	fi
2271
2272
2273	# WECHSEL IN TEMPORAEREN KATALOG
2274	cd $TEMPDIR
2275	printf "\n *** changed to temporary directory: $TEMPDIR"
2276
2277
2278	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2279	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2280	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2281	# ERMITTELN
2282	(( i = 0 ))
2283	while (( i < iout ))
2284	do
2285	(( i = i + 1 ))
2286	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2287	then
2288	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2289	else
2290	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2291	fi
2292	done
2293
2294
2295	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2296	if [[ $do_compile = true ]]
2297	then
2298
2299
2300	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2301	printf "\n\n\n *** compilation starts \n$striche\n"
2302	printf " *** compilation with make using following options:\n"
2303	printf " compilername: $compiler_name\n"
2304	printf " options: $fopts\n"
2305	printf " preprocessor-directives: $cpp_options \n"
2306	printf " linker-options: $lopts \n"
2307	printf " source code files: $source_list \n"
2308
2309	if [[ $localhost = nech ]]
2310	then
2311	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2312	cp $TEMPDIR_COMPILE/a.out .
2313	[[ $? != 0 ]] && compile_error=true
2314	rm -rf $TEMPDIR_COMPILE
2315	elif [[ $localhost = lcsgib ]]
2316	then
2317	printf " compiler is called via ssh on \"bicegate\" \n"
2318	ssh 130.73.232.102 -l $usern ". /usr/share/modules/init/bash; module load mpt; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2319	[[ ! -f a.out ]] && compile_error=true
2320	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2321	elif [[ $localhost = lcsgih ]]
2322	then
2323	printf " compiler is called via ssh on \"hicegate\" \n"
2324	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load mpt; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2325	# ssh 130.75.4.102 -l $usern ". /usr/share/modules/init/bash; module load mvapich2; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2326	# print ". /usr/share/modules/init/bash; module load mpt; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" " \| ssh ${usern}@130.75.4.102 2>&1
2327	[[ ! -f a.out ]] && compile_error=true
2328	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2329	else
2330	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2331	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2332	fi
2333
2334	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2335	then
2336	printf "\n +++ error occured while compiling or linking"
2337	locat=compile
2338
2339	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2340	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2341	# then
2342	exit
2343	# else
2344	# locat=normal
2345	# fi
2346	else
2347	printf "$striche\n *** compilation finished \n"
2348	fi
2349	fi
2350
2351
2352	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2353	if [[ $local_compile = true ]]
2354	then
2355	cd $HOME
2356	rm -rf $TEMPDIR
2357	locat=local_compile; exit
2358	fi
2359
2360
2361	# BEREITSTELLEN DER INPUT-DATEIEN
2362	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2363	(( i = 0 ))
2364	while (( i < iin ))
2365	do
2366	(( i = i + 1 ))
2367	if (( i == 1 ))
2368	then
2369	printf "\n\n *** providing INPUT-files:\n$striche"
2370	fi
2371
2372
2373	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2374	if [[ "${transin[$i]}" = unavailable ]]
2375	then
2376	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2377	then
2378	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2379	printf "\n is not available!"
2380	else
2381	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2382	printf "\n is not available!"
2383	fi
2384	continue
2385	fi
2386
2387	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2388	files_for_pes=false; datentyp=file
2389	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2390	then
2391	files_for_pes=true; datentyp=directory
2392	actionin[$i]=""
2393	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2394	then
2395	actionin[$i]=""
2396	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2397	then
2398	files_for_pes=true; datentyp=directory
2399	actionin[$i]="ar"
2400	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2401	then
2402	actionin[$i]="ar"
2403	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2404	then
2405	files_for_pes=true; datentyp=directory
2406	actionin[$i]="fl"
2407	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2408	then
2409	actionin[$i]="fl"
2410	fi
2411
2412	if [[ $files_for_pes = true ]]
2413	then
2414	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2415	else
2416	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2417	fi
2418
2419	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2420	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2421	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2422	# SERVER ZU HOLEN
2423	if [[ "${actionin[$i]}" = fl ]]
2424	then
2425	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2426	if [[ $files_for_pes = false ]]
2427	then
2428	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2429	then
2430	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2431	got_tmp[$i]=true
2432	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2433	then
2434	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2435	printf "\n *** trying to use backup copy in \"$WORK\" "
2436	cp $WORK/${frelin[$i]} ${localin[$i]}
2437	else
2438	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2439	printf "\n or \"$tmp_data_catalog\" does not exist!"
2440	printf "\n *** trying to get copy from archive"
2441	actionin[$i]=ar
2442	fi
2443	else
2444	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2445	then
2446	mkdir ${localin[$i]}
2447	cd $tmp_data_catalog/${frelin[$i]}
2448	for file in $(ls *)
2449	do
2450	ln $file $TEMPDIR/${localin[$i]}
2451	done
2452	cd $TEMPDIR
2453	got_tmp[$i]=true
2454	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2455	then
2456	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2457	printf "\n *** trying to use backup copy in \"$WORK\" "
2458	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2459	else
2460	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2461	printf "\n or \"$tmp_data_catalog\" does not exist!"
2462	printf "\n *** trying to get copy from archive"
2463	actionin[$i]=ar
2464	fi
2465	fi
2466	fi
2467
2468
2469	# DATEI LIEGT AUF ARCHIV-SERVER
2470	if [[ "${actionin[$i]}" = ar ]]
2471	then
2472
2473	if [[ $files_for_pes = false ]]
2474	then
2475	printf "\n file will be restored from archive-system ($archive_system)!"
2476	else
2477	printf "\n directory will be restored from archive-system ($archive_system)!"
2478	fi
2479
2480	file_restored=false
2481
2482	if [[ $archive_system = asterix ]]
2483	then
2484	do_stagein=true
2485	(( stagein_anz = 0 ))
2486	while [[ $do_stagein = true ]]
2487	do
2488	if [[ $files_for_pes = false ]]
2489	then
2490	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2491	else
2492	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2493	fi
2494	cat STAGEIN_OUTPUT
2495	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2496	then
2497	file_restored=true
2498	do_stagein=false
2499	else
2500	(( stagein_anz = stagein_anz + 1 ))
2501	if (( stagein_anz == 10 ))
2502	then
2503	printf "\n +++ stagein stoped after 10 tries"
2504	locat=stage
2505	exit
2506	fi
2507	printf "\n +++ restoring from archive failed, trying again:"
2508	sleep 900
2509	fi
2510	done
2511	elif [[ $archive_system = DMF ]]
2512	then
2513	if [[ $files_for_pes = false ]]
2514	then
2515	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2516	locat=DMF
2517	exit
2518	else
2519	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2520	cp -r $ARCHIVE/${frelin[$i]} $PWD
2521	file_restored=true
2522	fi
2523	elif [[ $archive_system = tivoli ]]
2524	then
2525	if [[ $files_for_pes = false ]]
2526	then
2527	if [[ $localhost = ibmh ]]
2528	then
2529	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2530	else
2531	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2532	fi
2533	else
2534	(( inode = 0 ))
2535	while (( inode < nodes ))
2536	do
2537	if [[ $localhost = ibmh ]]
2538	then
2539	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2540	else
2541	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2542	fi
2543	(( inode = inode + 1 ))
2544	done
2545	fi
2546	file_restored=true
2547	elif [[ $archive_system = ut ]]
2548	then
2549	if [[ $files_for_pes = false ]]
2550	then
2551	cp $UT/${frelin[$i]} .
2552	else
2553	(( inode = 0 ))
2554	while (( inode < nodes ))
2555	do
2556	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2557	(( inode = inode + 1 ))
2558	done
2559	fi
2560	file_restored=true
2561	else
2562	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2563	locat=rearchive
2564	exit
2565	fi
2566
2567	if [[ $file_restored = true ]]
2568	then
2569
2570	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2571	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2572	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2573	if [[ $files_for_pes = false ]]
2574	then
2575	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2576	else
2577	mkdir $tmp_data_catalog/${frelin[$i]}
2578	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2579	fi
2580	got_tmp[$i]=true
2581
2582	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2583	mv ${frelin[$i]} ${localin[$i]}
2584
2585	fi
2586	fi
2587
2588
2589	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2590	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2591	then
2592
2593	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2594	then
2595
2596	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2597	printf "\n file will be provided for $numprocs processors"
2598	mkdir ${localin[$i]}
2599	ival=$numprocs
2600	(( ii = 0 ))
2601	while (( ii <= ival-1 ))
2602	do
2603	if (( ii < 10 ))
2604	then
2605	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2606	elif (( ii < 100 ))
2607	then
2608	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2609	elif (( ii < 1000 ))
2610	then
2611	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2612	else
2613	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2614	fi
2615	(( ii = ii + 1 ))
2616	done
2617
2618	else
2619
2620	if [[ $files_for_pes = true ]]
2621	then
2622
2623	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2624	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2625	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2626	# PER MOVE UMBENANNT WERDEN
2627	printf "\n providing $numprocs files for the respective processors"
2628	mkdir ${localin[$i]}
2629	if [[ $link_local_input = true ]]
2630	then
2631	printf " using ln -f\n"
2632	cd ${absnamein[$i]}
2633	for file in $(ls *)
2634	do
2635	ln -f $file ${localin[$i]}
2636	done
2637	cd $TEMPDIR
2638	fi
2639	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2640	if [[ ! -f "${localin[$i]}/_0000" ]]
2641	then
2642	if [[ $link_local_input = true ]]
2643	then
2644	printf " ln failed for .../_0000, using cp...\n"
2645	fi
2646	cp -r ${absnamein[$i]}/* ${localin[$i]}
2647	fi
2648
2649	else
2650	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2651	if [[ $link_local_input = true ]]
2652	then
2653	printf " using ln -f\n"
2654	ln -f ${absnamein[$i]} ${localin[$i]}
2655	fi
2656	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2657	if [[ ! -f "${localin[$i]}" ]]
2658	then
2659	if [[ $link_local_input = true ]]
2660	then
2661	printf " ln failed, using cp...\n"
2662	fi
2663	cp ${absnamein[$i]} ${localin[$i]}
2664	fi
2665	fi
2666	fi
2667	fi
2668
2669	done
2670	if (( i != 0 ))
2671	then
2672	printf "\n$striche\n *** all INPUT-files provided \n"
2673	fi
2674
2675
2676	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2677	# LESEN VON PALM)
2678	cat > ENVPAR << %%END%%
2679	&envpar run_identifier = '$fname', host = '$localhost',
2680	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2681	maximum_cpu_time_allowed = ${cpumax}.,
2682	revision = '$global_revision' /
2683
2684	%%END%%
2685
2686
2687	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2688	(( i = 0 ))
2689	while (( i < iic ))
2690	do
2691	(( i = i + 1 ))
2692	if (( i == 1 ))
2693	then
2694	printf "\n\n *** execution of INPUT-commands:\n$striche"
2695	fi
2696	printf "\n >>> ${in_command[$i]}"
2697	eval ${in_command[$i]}
2698	if (( i == iic ))
2699	then
2700	printf "\n$striche\n"
2701	fi
2702	done
2703
2704
2705	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2706	cpurest=${cpumax}.
2707
2708
2709	# PROGRAMMSTART
2710	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2711	PATH=$PATH:$TEMPDIR
2712
2713	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2714	then
2715	if [[ "$ENVIRONMENT" = BATCH ]]
2716	then
2717	printf "\n +++ debug is allowed in interactive mode only"
2718	locat=debug
2719	exit
2720	fi
2721	if [[ $localhost = decalpha ]]
2722	then
2723	dxladebug a.out
2724	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2725	then
2726
2727	# SETUP THE IBM MPI ENVIRONMENT
2728	export MP_SHARED_MEMORY=yes
2729	export AIXTHREADS_SCOPE=S
2730	export OMP_NUM_THREADS=$threads_per_task
2731	export AUTHSTATE=files
2732	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2733
2734	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2735	export MP_ADAPTER_USE=shared
2736	export MP_CPU_USE=multiple
2737	export MP_TIMEOUT=1200
2738
2739	unset MP_TASK_AFFINITY
2740
2741	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2742	#(( ii = 1 ))
2743	#while (( ii <= $numprocs ))
2744	#do
2745	# echo $localhost_realname >> hostfile
2746	# (( ii = ii + 1 ))
2747	#done
2748	#export MP_HOSTFILE=hostfile
2749
2750	if [[ "$LOADLBATCH" = yes ]]
2751	then
2752	totalview poe a.out $ROPTS
2753	else
2754	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2755	export TVDSVRLAUNCHCMD=ssh
2756	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2757	fi
2758	else
2759	printf "\n +++ no debug available on \"$localhost\" "
2760	printf "\n or not implemented in mrun so far"
2761	locat=debug
2762	exit
2763	fi
2764	else
2765	if [[ -n $numprocs ]]
2766	then
2767
2768	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2769	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2770	then
2771	# SETUP THE IBM MPI ENVIRONMENT
2772	export MP_SHARED_MEMORY=yes
2773	export AIXTHREAD_SCOPE=S
2774	export OMP_NUM_THREADS=$threads_per_task
2775	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
2776	export AUTHSTATE=files
2777	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2778	# export MP_PRINTENV=yes
2779
2780	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
2781	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
2782	export MP_WAIT_MODE=poll
2783	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
2784	# export MP_EAGER_LIMIT=65535
2785
2786	# # TESTWEISE FUER TURBOMPI (JAN 05)
2787	# export MPJ_MTAB=128
2788	# export MPJ_ALLTOALL=1
2789	# export MPJ_ALLTOALLV=1
2790
2791	if [[ "$LOADLBATCH" = yes ]]
2792	then
2793	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
2794	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
2795	then
2796	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
2797	else
2798	poe ./a.out $ROPTS
2799	fi
2800	else
2801	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
2802	then
2803	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
2804	elif [[ $localhost = ibmy ]]
2805	then
2806	if [[ -f $hostfile ]]
2807	then
2808	cp $hostfile hostfile
2809	else
2810	(( ii = 1 ))
2811	while (( ii <= $numprocs ))
2812	do
2813	echo $localhost_realname >> hostfile
2814	(( ii = ii + 1 ))
2815	done
2816	fi
2817	export MP_HOSTFILE=hostfile
2818	./a.out -procs $tasks_per_node $ROPTS
2819	else
2820	if [[ "$host_file" = "" ]]
2821	then
2822	printf "\n +++ no hostfile given in configuration file"
2823	locat=config_file
2824	exit
2825	else
2826	eval host_file=$host_file
2827	fi
2828	export MP_HOSTFILE=$host_file
2829	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
2830	fi
2831	fi
2832	elif [[ $host = nech \|\| $host = neck ]]
2833	then
2834	(( ii = nodes ))
2835	if [[ $ii = 1 ]]
2836	then
2837	export F_ERRCNT=0 # acceptable number of errors before program is stopped
2838	export MPIPROGINF=YES
2839	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
2840	echo "*** execution on single node with mpirun"
2841	mpirun -np $numprocs ./a.out $ROPTS
2842	else
2843	(( i = 0 ))
2844	while (( i < ii ))
2845	do
2846	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
2847	(( i = i + 1 ))
2848	done
2849
2850	echo "#!/bin/sh" > mpi_exec_shell
2851	echo " " >> mpi_exec_shell
2852	echo "set -u" >> mpi_exec_shell
2853	echo "F_ERRCNT=0" >> mpi_exec_shell
2854	echo "MPIPROGINV=YES" >> mpi_exec_shell
2855	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
2856	echo "cpurest=$cpurest" >> mpi_exec_shell
2857	echo "fname=$fname" >> mpi_exec_shell
2858	echo "localhost=$localhost" >> mpi_exec_shell
2859	echo "return_addres=$return_addres" >> mpi_exec_shell
2860	echo "return_username=$return_username" >> mpi_exec_shell
2861	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
2862	echo "write_binary=$write_binary" >> mpi_exec_shell
2863	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2864	echo " " >> mpi_exec_shell
2865	echo "export F_ERRCNT" >> mpi_exec_shell
2866	echo "export MPIPROGINV" >> mpi_exec_shell
2867	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
2868	echo "export cpurest" >> mpi_exec_shell
2869	echo "export fname" >> mpi_exec_shell
2870	echo "export localhost" >> mpi_exec_shell
2871	echo "export return_addres" >> mpi_exec_shell
2872	echo "export return_username" >> mpi_exec_shell
2873	echo "export tasks_per_node" >> mpi_exec_shell
2874	echo "export write_binary" >> mpi_exec_shell
2875	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2876	echo " " >> mpi_exec_shell
2877	echo "exec ./a.out" >> mpi_exec_shell
2878
2879	chmod u+x mpi_exec_shell
2880	export MPIPROGINF=YES
2881	mpirun -f multinode_config &
2882	wait
2883
2884	fi
2885	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
2886	then
2887
2888	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
2889	# DOES NOT EXIST
2890	if [[ $host != lcsgih && $host != lcsgib ]]
2891	then
2892	if [[ -f $hostfile ]]
2893	then
2894	cp $hostfile hostfile
2895	else
2896	(( ii = 1 ))
2897	while (( ii <= $numprocs / $threads_per_task ))
2898	do
2899	echo $localhost_realname >> hostfile
2900	(( ii = ii + 1 ))
2901	done
2902	fi
2903	eval zeile=\"`head -n $ii hostfile`\"
2904	printf "\n *** running on: $zeile"
2905	fi
2906
2907	(( ii = $numprocs / $threads_per_task ))
2908	export OMP_NUM_THREADS=$threads_per_task
2909	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
2910	if [[ $threads_per_task != 1 ]]
2911	then
2912	printf "\n threads per task: $threads_per_task"
2913	fi
2914	if [[ $run_coupled_model = false ]]
2915	then
2916	printf "\n\n"
2917	if [[ $host = lcsgih \|\| $host = lcsgib ]]
2918	then
2919	# ulimit -s 300000 # A too large stack size causes problems
2920	# export MV2_NUM_PORTS=2
2921	# export MV2_CPU_MAPPING=0:1:2:3
2922	# mpiexec ./a.out $ROPTS
2923	# export MPI_LAUNCH_TIMEOUT=360
2924	mpiexec_mpt -np $ii ./a.out $ROPTS
2925	elif [[ $host = lcxt4 ]]
2926	then
2927	aprun -n $ii -N $tasks_per_node a.out $ROPTS
2928	else
2929	echo "no_coupling" > runfile_atmos
2930	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
2931	fi
2932	else
2933
2934	# currently there is no full MPI-2 support on ICE and XT4
2935	(( iia = $numprocs_atmos / $threads_per_task ))
2936	(( iio = $numprocs_ocean / $threads_per_task ))
2937	printf "\n coupled run ($iia atmosphere, $iio ocean)"
2938	printf "\n using $coupled_mode coupling"
2939	printf "\n\n"
2940
2941	if [[ $coupled_mode = "mpi2" ]]
2942	then
2943	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
2944	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
2945	if [[ $host = lcsgih \|\| $host = lcsgib ]]
2946	then
2947
2948	mpiexec_mpt -np $iia ./palm $ROPTS < runfile_atmos &
2949	mpiexec_mpt -np $iio ./palm $ROPTS < runfile_ocean &
2950
2951	elif [[ $host = lcxt4 ]]
2952	then
2953
2954	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
2955	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
2956
2957	else
2958	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
2959	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
2960	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
2961	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
2962	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
2963	fi
2964	wait
2965
2966	else
2967
2968	echo "coupled_run $iia $iio" > runfile_atmos
2969	if [[ $host = lcsgih \|\| $host = lcsgib ]]
2970	then
2971
2972	mpiexec_mpt -np $ii a.out $ROPTS < runfile_atmos
2973
2974	elif [[ $host = lcxt4 ]]
2975	then
2976
2977	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
2978
2979	fi
2980	wait
2981	fi
2982
2983	# if [[ $scirocco = true ]]
2984	# then
2985	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
2986	# else
2987	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
2988	# fi
2989	fi
2990	elif [[ $host = decalpha ]]
2991	then
2992	dmpirun -np $numprocs a.out $ROPTS
2993	elif [[ $host = lctit ]]
2994	then
2995	export runfile=runfile.$kennung
2996
2997	echo "cd $PWD" > $runfile
2998	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
2999	echo "export cpurest=$cpurest" >> $runfile
3000	echo "export fname=$fname" >> $runfile
3001	echo "export localhost=$localhost" >> $runfile
3002	echo "export return_addres=$return_addres" >> $runfile
3003	echo "export return_username=$return_username" >> $runfile
3004	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3005	echo "export write_binary=$write_binary" >> $runfile
3006	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3007	echo "./a.out" >> $runfile
3008	chmod u+x $runfile
3009
3010	if [[ "$QUEUE" = interactive ]]
3011	then
3012	mpirun -np $numprocs a.out $ROPTS
3013	else
3014	(( mem_tsubame = $memory / 1024.0 ))
3015	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3016	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3017	/n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3018	fi
3019
3020	rm $runfile
3021	else
3022	mpprun -n $numprocs a.out $ROPTS
3023	fi
3024	[[ $? != 0 ]] && execution_error=true
3025
3026
3027	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3028	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3029	then
3030	apprentice
3031	fi
3032	else
3033	a.out $ROPTS
3034	fi
3035	fi
3036	if [[ $? != 0 \|\| $execution_error = true ]]
3037	then
3038
3039	# ABBRUCH BEI LAUFZEITFEHLER
3040	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3041	printf "\n +++ runtime error occured"
3042	locat=execution
3043	exit
3044	else
3045	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3046	printf "\n$striche\n *** execution finished \n"
3047	fi
3048
3049
3050
3051	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3052	(( i = 0 ))
3053	while (( i < ioc ))
3054	do
3055	(( i = i + 1 ))
3056	if (( i == 1 ))
3057	then
3058	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3059	fi
3060	printf "\n >>> ${out_command[$i]}"
3061	eval ${out_command[$i]}
3062	if (( i == ioc ))
3063	then
3064	printf "\n$striche\n"
3065	fi
3066	done
3067
3068
3069	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3070	if [[ $do_trace = true ]]
3071	then
3072	printf "\n\n"
3073	ls -al
3074	fi
3075
3076
3077
3078	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3079	(( i = 0 ))
3080	while (( i < iout ))
3081	do
3082	(( i = i + 1 ))
3083	if (( i == 1 ))
3084	then
3085	printf "\n\n *** saving OUTPUT-files:\n$striche"
3086	fi
3087
3088	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3089	files_for_pes=false; filetyp=file
3090	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3091	then
3092	files_for_pes=true; filetyp=directory
3093	actionout[$i]=""
3094	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3095	then
3096	actionout[$i]=""
3097	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3098	then
3099	files_for_pes=true; filetyp=directory
3100	actionout[$i]="ar"
3101	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3102	then
3103	actionout[$i]="ar"
3104	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3105	then
3106	files_for_pes=true; filetyp=directory
3107	actionout[$i]="fl"
3108	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3109	then
3110	actionout[$i]="fl"
3111	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3112	then
3113	files_for_pes=true; filetyp=directory
3114	actionout[$i]="tr"
3115	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3116	then
3117	actionout[$i]="tr"
3118	fi
3119
3120	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3121	then
3122	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3123	elif [[ ! -f ${localout[$i]}/_0000 && $files_for_pes = true ]]
3124	then
3125	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3126	else
3127
3128
3129	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3130	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3131	# REMOTE-RECHNUNGEN
3132	if [[ "${actionout[$i]}" = tr ]]
3133	then
3134	if [[ $localhost != $fromhost ]]
3135	then
3136	if [[ $files_for_pes = false ]]
3137	then
3138	cps=""
3139	cst=""
3140	else
3141	cps=-c
3142	cst="/"
3143	fi
3144	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3145	then
3146
3147	# TRANSFER IN EIGENSTAENDIGEM JOB
3148	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3149	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3150	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3151	if [[ $files_for_pes = false ]]
3152	then
3153	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3154	else
3155	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3156	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3157	fi
3158
3159	echo "set -x" > transfer_${localout[$i]}
3160	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3161
3162	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3163	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3164	printf "\n or higher cycle\n"
3165	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3166
3167	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3168
3169	if [[ $localhost = nech ]]
3170	then
3171	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3172	else
3173	if [[ "$LOGNAME" = b323013 ]]
3174	then
3175	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3176	else
3177	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3178	fi
3179	fi
3180
3181	else
3182
3183	# TRANSFER INNERHALB DIESES JOBS
3184	transfer_failed=false
3185	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3186	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3187	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3188	[[ $? != 0 ]] && transfer_failed=true
3189
3190	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3191	# LOKALER MASCHINE ANLEGEN
3192	if [[ $transfer_failed = true ]]
3193	then
3194	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3195	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3196
3197	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3198	# ANLEGEN.
3199	eval local_catalog=${pathout[$i]}
3200	if [[ ! -d $local_catalog ]]
3201	then
3202	printf " *** local directory does not exist. Trying to create:\n"
3203	printf " $local_catalog \n"
3204	mkdir -p $local_catalog
3205	fi
3206	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3207	transfer_problems=true
3208	fi
3209	fi
3210	else
3211
3212	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3213	actionout[$i]=""
3214	fi
3215	fi
3216
3217
3218	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3219	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3220	# REMOTE-RECHNUNGEN
3221	if [[ "${actionout[$i]}" = tra ]]
3222	then
3223	if [[ $localhost != $fromhost ]]
3224	then
3225	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3226	then
3227
3228	# TRANSFER IN EIGENSTAENDIGEM JOB
3229	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3230	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3231	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3232	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3233
3234	echo "set -x" > transfer_${localout[$i]}
3235	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3236
3237	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3238	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3239	printf "\n or higher cycle\n"
3240	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3241
3242	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3243
3244	if [[ $localhost = nech ]]
3245	then
3246	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3247	else
3248	if [[ $LOGNAME = b323013 ]]
3249	then
3250	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3251	else
3252	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3253	fi
3254	fi
3255
3256	else
3257
3258	# TRANSFER INNERHALB DIESES JOBS
3259	transfer_failed=false
3260	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3261	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3262	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3263	[[ $? != 0 ]] && transfer_failed=true
3264
3265	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3266	# LOKALER MASCHINE ANLEGEN
3267	if [[ $transfer_failed = true ]]
3268	then
3269	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3270	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3271
3272	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3273	# ANLEGEN
3274	eval local_catalog=${pathout[$i]}
3275	if [[ ! -d $local_catalog ]]
3276	then
3277	printf " *** local directory does not exist. Trying to create:\n"
3278	printf " $local_catalog \n"
3279	mkdir -p $local_catalog
3280	fi
3281
3282	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3283	transfer_problems=true
3284	fi
3285	fi
3286	else
3287
3288	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3289	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3290	actionout[$i]=a
3291	fi
3292	fi
3293
3294
3295	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3296	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3297	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3298	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3299	if [[ "${actionout[$i]}" = fl ]]
3300	then
3301	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3302	chmod g+rx $tmp_data_catalog
3303	if [[ $files_for_pes = false ]]
3304	then
3305	printf "\n >>> OUTPUT: ${localout[$i]} to"
3306	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3307	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3308	else
3309	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3310	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3311	mkdir $tmp_data_catalog/${frelout[$i]}
3312	cd ${localout[$i]}
3313	for file in $(ls *)
3314	do
3315	ln -f $file $tmp_data_catalog/${frelout[$i]}
3316	done
3317	cd $TEMPDIR
3318	fi
3319
3320
3321	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3322	if [[ $store_on_archive_system = true ]]
3323	then
3324
3325	if [[ $archive_system = asterix ]]
3326	then
3327	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3328	if [[ $files_for_pes = false ]]
3329	then
3330	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3331	else
3332	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3333	fi
3334	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3335	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3336	echo "then" >> archive_${frelout[$i]}
3337	echo " do_stageout=false" >> archive_${frelout[$i]}
3338	echo "else" >> archive_${frelout[$i]}
3339	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3340	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3341	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3342	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3343	if [[ $files_for_pes = false ]]
3344	then
3345	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3346	else
3347	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3348	fi
3349	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3350	echo "fi" >> archive_${frelout[$i]}
3351	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3352	elif [[ $archive_system = DMF ]]
3353	then
3354	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3355	if [[ $files_for_pes = false ]]
3356	then
3357	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3358	locat=DMF
3359	exit
3360	else
3361	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3362	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3363	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3364	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3365	fi
3366	elif [[ $archive_system = tivoli ]]
3367	then
3368	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3369	if [[ $files_for_pes = false ]]
3370	then
3371	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3372	echo "set -x" >> archive_${frelout[$i]}
3373	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3374	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3375	else
3376
3377	echo "set -x" >> archive_${frelout[$i]}
3378	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3379	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3380	cd $tmp_data_catalog
3381	all_files=`ls -1 ${frelout[$i]}/*`
3382	cd - > /dev/null
3383	(( inode = 0 ))
3384	(( tp1 = tasks_per_node + 1 ))
3385	while (( inode < nodes ))
3386	do
3387	# echo "*** all_files = \"$all_files\" "
3388	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3389	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3390	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3391	# echo "*** files = \"$files\" "
3392	# echo "*** all_files = \"$all_files\" "
3393	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3394	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3395	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3396	(( inode = inode + 1 ))
3397	done
3398	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3399	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3400	fi
3401	elif [[ $archive_system = ut ]]
3402	then
3403	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3404	if [[ $files_for_pes = false ]]
3405	then
3406	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3407	echo "set -x" >> archive_${frelout[$i]}
3408	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3409	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3410	else
3411
3412	echo "set -x" >> archive_${frelout[$i]}
3413	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3414	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3415	cd $tmp_data_catalog
3416	all_files=`ls -1 ${frelout[$i]}/*`
3417	cd - > /dev/null
3418	(( inode = 0 ))
3419	(( tp1 = tasks_per_node + 1 ))
3420	while (( inode < nodes ))
3421	do
3422	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3423	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3424	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3425	(( inode = inode + 1 ))
3426	done
3427	fi
3428	elif [[ $archive_system = none ]]
3429	then
3430	printf " +++ archiving on $localhost not available!\n"
3431	fi
3432
3433	if [[ $archive_system != none ]]
3434	then
3435	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
3436	then
3437	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3438	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3439	elif [[ $localhost = nech ]]
3440	then
3441	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3442	fi
3443	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3444	fi
3445	else
3446	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
3447	fi
3448
3449
3450	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3451	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3452	if [[ $files_for_pes = false ]]
3453	then
3454	cat /dev/null > ${pathout[$i]}
3455	else
3456	mkdir -p ${pathout[$i]}
3457	fi
3458
3459	fi
3460
3461
3462	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3463	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3464	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3465	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3466	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3467	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3468	if [[ "${actionout[$i]}" = ar ]]
3469	then
3470	if [[ $files_for_pes = false ]]
3471	then
3472	printf "\n >>> OUTPUT: ${localout[$i]} to"
3473	printf "\n ${pathout[$i]}"
3474	printf "\n File will be copied to archive-system ($archive_system) !\n"
3475	else
3476	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3477	printf "\n ${pathout[$i]}"
3478	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3479	fi
3480	mv ${localout[$i]} ${frelout[$i]}
3481
3482	file_saved=false
3483
3484	if [[ $archive_system = asterix ]]
3485	then
3486	do_stageout=true
3487	(( stageout_anz = 0 ))
3488	while [[ $do_stageout = true ]]
3489	do
3490	if [[ $files_for_pes = false ]]
3491	then
3492	stageout ${frelout[$i]} > STAGE_OUTPUT
3493	else
3494	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3495	fi
3496	cat STAGE_OUTPUT
3497	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3498	then
3499	file_saved=true
3500	do_stageout=false
3501	else
3502	if [[ $files_for_pes = false ]]
3503	then
3504	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3505	else
3506	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3507	fi
3508	(( stageout_anz = stageout_anz + 1 ))
3509	if (( stageout_anz == 10 ))
3510	then
3511	printf "\n +++ stoped after 10 unsuccessful tries!"
3512	archive_save=false
3513	do_stageout=false
3514	else
3515	printf "\n *** new try to store on archive after 15 min:"
3516	sleep 900
3517	fi
3518	fi
3519	done
3520	elif [[ $archive_system = DMF ]]
3521	then
3522	if [[ $files_for_pes = false ]]
3523	then
3524	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3525	locat=DMF
3526	exit
3527	else
3528	rm -rf $ARCHIVE/${frelout[$i]}
3529	cp -r ${frelout[$i]} $ARCHIVE
3530	fi
3531	file_saved=true
3532	elif [[ $archive_system = tivoli ]]
3533	then
3534	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3535	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3536	# GELEGT WERDEN
3537	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3538	chmod g+rx $tmp_data_catalog
3539	if [[ $files_for_pes = false ]]
3540	then
3541	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3542	else
3543	mkdir $tmp_data_catalog/${frelout[$i]}
3544	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3545	fi
3546
3547	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3548	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3549	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3550	if [[ $files_for_pes = false ]]
3551	then
3552	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3553	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3554	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3555	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3556	else
3557	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3558	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3559	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3560	fi
3561
3562	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3563	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3564	file_saved=true
3565
3566	elif [[ $archive_system = ut ]]
3567	then
3568	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3569	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3570	# GELEGT WERDEN
3571	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3572	chmod g+rx $tmp_data_catalog
3573	if [[ $files_for_pes = false ]]
3574	then
3575	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3576	else
3577	mkdir $tmp_data_catalog/${frelout[$i]}
3578	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3579	fi
3580
3581	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3582	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3583	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3584	if [[ $files_for_pes = false ]]
3585	then
3586	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3587	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3588	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3589	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3590	else
3591	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3592	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3593	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3594	fi
3595
3596	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3597	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3598	file_saved=true
3599
3600	else
3601	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3602	archive_save=false
3603	fi
3604	if [[ $file_saved = true ]]
3605	then
3606	if [[ $files_for_pes = false ]]
3607	then
3608	cat /dev/null > ${pathout[$i]}
3609	else
3610	mkdir -p ${pathout[$i]}
3611	fi
3612	fi
3613	fi
3614
3615	# APPEND AUF LOKALER MASCHINE
3616	if [[ "${actionout[$i]}" = "a" ]]
3617	then
3618	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3619	cat ${localout[$i]} >> ${pathout[$i]}
3620	fi
3621
3622	# KOPIEREN AUF LOKALER MASCHINE
3623	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3624	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3625	then
3626
3627	# KOPIEREN AUF EINPROZESSORMASCHINE
3628	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3629	then
3630	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3631	if [[ $link_local_output = true ]]
3632	then
3633	printf " using ln -f\n"
3634	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3635	fi
3636	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3637	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
3638	then
3639	if [[ $link_local_output = true ]]
3640	then
3641	printf " ln failed, using cp...\n"
3642	fi
3643	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3644	fi
3645	else
3646	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
3647	if [[ $link_local_output = true ]]
3648	then
3649	printf " using ln -f\n"
3650	ln -f ${localout[$i]} ${pathout[$i]}
3651	fi
3652	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3653	if [[ ! -f "${pathout[$i]}" ]]
3654	then
3655	if [[ $link_local_output = true ]]
3656	then
3657	printf " ln failed, using cp...\n"
3658	fi
3659	cp ${localout[$i]} ${pathout[$i]}
3660	fi
3661	fi
3662
3663	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
3664	then
3665
3666	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3667	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
3668	# WIRD DANN KOPIERT
3669	# PER MOVE UMBENANNT WERDEN
3670	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
3671	if [[ $link_local_output = true ]]
3672	then
3673	printf " using ln -f\n"
3674	mkdir ${pathout[$i]}
3675	cd ${localout[$i]}
3676	for file in $(ls *)
3677	do
3678	ln -f $file ${pathout[$i]}
3679	done
3680	cd $TEMPDIR
3681	fi
3682	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
3683	if [[ ! -f "${pathout[$i]}/_0000" ]]
3684	then
3685	if [[ $link_local_output = true ]]
3686	then
3687	printf " ln failed for .../_0000, using cp...\n"
3688	fi
3689	cp -r ${localout[$i]} ${pathout[$i]}
3690	fi
3691
3692	fi
3693	fi
3694	done
3695	if (( i != 0 ))
3696	then
3697	if [[ $transfer_problems = true ]]
3698	then
3699	printf "\n$striche\n *** OUTPUT-files saved"
3700	printf "\n +++ WARNING: some data transfers failed! \n"
3701	else
3702	printf "\n$striche\n *** all OUTPUT-files saved \n"
3703	fi
3704	fi
3705
3706
3707	# EVENTUELL FOLGEJOB STARTEN
3708	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
3709	if [[ -f CONTINUE_RUN ]]
3710	then
3711
3712	if [[ $archive_save = true ]]
3713	then
3714
3715	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
3716	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
3717	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
3718	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
3719	# HANDEN
3720	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
3721	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
3722	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
3723	if [[ $(echo $mc \| grep -c "#") != 0 ]]
3724	then
3725	mc=`echo $mc \| sed 's/#/f/g'`
3726	fi
3727
3728
3729	# JOB STARTEN
3730	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
3731	echo " $mc"
3732	printf "\n$striche\n"
3733	if [[ $localhost != $fromhost ]]
3734	then
3735
3736	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
3737	then
3738	echo "*** ssh will be used to initiate restart-runs!"
3739	echo " return_addres=\"$return_addres\" "
3740	echo " return_username=\"$return_username\" "
3741	if [[ $return_addres = 172.20.25.41 ]]
3742	then
3743	# WORKAROUND AUF SCIROCCO AM TIT
3744	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
3745	else
3746	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3747	fi
3748	else
3749	printf "\n +++ no restart mechanism available for host \"$localhost\" "
3750	locat=restart; exit
3751	fi
3752
3753	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
3754	# DER AKTUELLE JOB ENDET
3755	sleep 30
3756
3757	else
3758
3759	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
3760	# RUFEN WERDEN, AUSSER AUF lcfimm
3761	cd $LOCAL_PWD
3762	if [[ $localhost = lcfimm ]]
3763	then
3764	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3765	else
3766	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
3767	fi
3768	cd - > /dev/null
3769	fi
3770	printf "\n$striche\n *** restart-run initiated \n"
3771
3772
3773	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
3774	# GEHOLT WORDEN SIND, LOESCHEN
3775	(( i = 0 ))
3776	while (( i < iin ))
3777	do
3778	(( i = i + 1 ))
3779	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
3780	then
3781	rm -r $tmp_data_catalog/${frelin[$i]}
3782	fi
3783	done
3784
3785	else
3786
3787	printf "\n +++ no restart-run possible, since errors occured"
3788	printf "\n during the archive process"
3789	fi
3790
3791	fi
3792
3793
3794
3795	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
3796	if [[ "$email_notification" != "" ]]
3797	then
3798
3799	if [[ $localhost != $fromhost ]]
3800	then
3801	if [[ -f CONTINUE_RUN ]]
3802	then
3803	echo "PALM restart run necessary" > email_text
3804	echo "description header of actual run:" >> email_text
3805	cat CONTINUE_RUN >> email_text
3806	echo "mrun-command to restart:" >> email_text
3807	echo "$mc" >> email_text
3808	else
3809	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
3810	fi
3811	mail $email_notification < email_text
3812	printf "\n *** email notification sent to \"$email_notification\" "
3813	fi
3814	fi
3815
3816
3817
3818	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
3819	cd $HOME
3820	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
3821
3822	else
3823
3824
3825	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
3826	# CHENDE AKTIONEN DURCHGEFUEHRT
3827
3828	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
3829	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
3830	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
3831	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
3832	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
3833	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
3834	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
3835	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
3836	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
3837	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
3838	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
3839	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
3840	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
3841	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
3842	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
3843	if [[ $use_openmp = true ]]
3844	then
3845	mrun_com=${mrun_com}" -O"
3846	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
3847	else
3848	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
3849	fi
3850	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
3851	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
3852	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
3853	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
3854	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
3855	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
3856	if [[ $do_remote = true ]]
3857	then
3858	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
3859	fi
3860
3861
3862	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
3863	jobfile=jobfile.$RANDOM
3864
3865
3866	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
3867	echo "mkdir $TEMPDIR" >> $jobfile
3868	echo "cd $TEMPDIR" >> $jobfile
3869
3870
3871	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
3872	if [[ $do_trace = true ]]
3873	then
3874	echo "set -x" >> $jobfile
3875	else
3876	echo "set +vx" >> $jobfile
3877	fi
3878
3879
3880	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
3881	# DATEI FUER DEN JOB
3882	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
3883	then
3884
3885	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
3886	# KOPIEREN
3887	if [[ $restart_run != true ]]
3888	then
3889	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
3890	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
3891	fi
3892
3893	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
3894	echo "set -x" >> $jobfile
3895	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
3896	echo "export SOURCES_COMPLETE=true" >> $jobfile
3897
3898	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
3899	# ARBEITSVERZEICHNIS VERSCHIEBEN
3900	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
3901	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
3902	echo "execute_mrun=true" >> $jobfile
3903	echo " " >> $jobfile
3904
3905	else
3906
3907	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
3908	# SOWIE GEGEBENENFALLS DES MAKEFILES
3909	if [[ $do_compile = true ]]
3910	then
3911
3912	source_catalog=SOURCES_FOR_RUN_$fname
3913
3914	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
3915	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
3916	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
3917	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
3918	echo "export SOURCES_COMPLETE=true" >> $jobfile
3919	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
3920
3921	for filename in $source_list
3922	do
3923	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3924	echo "cat > $filename << \"%END%\"" >> $jobfile
3925	cat $source_catalog/$filename >> $jobfile
3926	echo " " >> $jobfile
3927	echo "%END%" >> $jobfile
3928	echo " " >> $jobfile
3929	done
3930
3931	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3932	echo "cat > Makefile << \"%END%\"" >> $jobfile
3933	cat $source_catalog/Makefile >> $jobfile
3934	echo " " >> $jobfile
3935	echo "%END%" >> $jobfile
3936	echo " " >> $jobfile
3937
3938	echo "cd - > /dev/null" >> $jobfile
3939
3940	fi
3941
3942
3943	# ABSPEICHERN DER KONFIGURATIONSDATEI
3944	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3945	echo "cat > $config_file << \"%END%\"" >> $jobfile
3946	cat $config_file >> $jobfile
3947	echo "%END%" >> $jobfile
3948	echo " " >> $jobfile
3949
3950
3951	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
3952	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3953	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
3954	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
3955	echo "%END%" >> $jobfile
3956	if [[ $host = lctit ]]
3957	then
3958	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
3959	echo "mv mrun_new $mrun_script_name" >> $jobfile
3960	fi
3961	echo "chmod u+x $mrun_script_name" >> $jobfile
3962	echo "execute_mrun=true" >> $jobfile
3963	echo " " >> $jobfile
3964
3965	fi
3966
3967
3968	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
3969	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
3970	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
3971	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
3972	if [[ $do_remote = true ]]
3973	then
3974	(( i = 0 ))
3975	while (( i < iin ))
3976	do
3977	(( i = i + 1 ))
3978	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
3979	if [[ "${transin[$i]}" = job ]]
3980	then
3981	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
3982	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
3983	echo " " >> $jobfile
3984	echo "%END%" >> $jobfile
3985	else
3986	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
3987	fi
3988
3989	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
3990	echo "if [[ \$? = 1 ]]" >> $jobfile
3991	echo "then" >> $jobfile
3992	echo " echo \" \" " >> $jobfile
3993	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
3994	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
3995	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
3996	echo " execute_mrun=false" >> $jobfile
3997	echo "fi" >> $jobfile
3998	done
3999	fi
4000
4001	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4002	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4003	echo "LOCAL_PWD=$working_directory" >> $jobfile
4004	echo "export LOCAL_PWD" >> $jobfile
4005
4006	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4007	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4008	echo "export LOCAL_MRUN_PATH" >> $jobfile
4009
4010	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4011	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4012	then
4013	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4014	fi
4015
4016	# MRUN AUF ZIELRECHNER AUFRUFEN
4017	echo "set -x" >> $jobfile
4018	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4019
4020	echo 'ls -al; echo `pwd`' >> $jobfile
4021	echo "cd \$HOME" >> $jobfile
4022	echo "rm -rf $TEMPDIR" >> $jobfile
4023
4024
4025
4026
4027	# JOB PER SUBJOB STARTEN
4028	if [[ $silent = false ]]
4029	then
4030	printf "\n "
4031	else
4032	printf "\n\n"
4033	fi
4034
4035	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog $jobfile
4036	rm -rf $jobfile
4037
4038
4039	fi # ENDE REMOTE-TEIL
4040
4041
4042
4043	# ENDE DER PROZEDUR

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